BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9313
(356 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/333 (58%), Positives = 240/333 (72%), Gaps = 28/333 (8%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY DA+
Sbjct: 31 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 90
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVS LPK M Q+++E LF YG IITS
Sbjct: 91 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITS 150
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G+ +S+G+GF+RF++ IEAE A++ LNG P GASEPIT
Sbjct: 151 RILVDQ---------VTGS-----VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEPIT 196
Query: 203 VKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHH-SARFKFAPLTADLLNNSM 261
VKFAN+P+ + QA + R + PLHH + RF+F+P+T D + N
Sbjct: 197 VKFANNPSQKT--------GQALLTHLYQTTARRYTGPLHHQTQRFRFSPITIDSVTN-- 246
Query: 262 LPPKSLHG---SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFV 318
L SL G +GWCIFVYNL+PE +++VLWQLFGPFGAV NVKV+RD T KCKGFGFV
Sbjct: 247 LAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFV 306
Query: 319 CMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
MTNYDEA AI SLNGY LGDR+LQVSFKT K
Sbjct: 307 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 339
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 87/225 (38%), Gaps = 68/225 (30%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ-SLGYGFVNYYRT 78
S + +++NL V+ +P+TM Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 114 SSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKR 173
Query: 79 EDAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL--------------------- 115
+AE AI LNG K S I V +A S+ +A L
Sbjct: 174 IEAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALLTHLYQTTARRYTGPLHHQTQR 233
Query: 116 -----------------------------YVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
+V L + L LF P+G + ++
Sbjct: 234 FRFSPITIDSVTNLAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKV-- 291
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+R F + KG GFV + EA A+ LNG
Sbjct: 292 -------IRDFTTNK------CKGFGFVTMTNYDEAAMAIASLNG 323
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 383 bits (984), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/342 (56%), Positives = 238/342 (69%), Gaps = 36/342 (10%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ ++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY D
Sbjct: 28 EADDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPND 87
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
A++AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVS LPK M Q+++E LF YG II
Sbjct: 88 ADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRII 147
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D ++ +S+G+GF+RF++ IEAE A++ LNG P GASEP
Sbjct: 148 TSRILVD---------------QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGASEP 192
Query: 201 ITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHH-SARF-------KFAPL 252
ITVKFAN+P+ + QA + R + PLHH + RF +F+P+
Sbjct: 193 ITVKFANNPSQKT--------GQALLTHLYQTTARRYTGPLHHQTQRFSPLSILPRFSPI 244
Query: 253 TADLLNNSMLPPKSLHG---SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
T D + N L SL G +GWCIFVYNL+PE +++VLWQLFGPFGAV NVKV+RD T
Sbjct: 245 TIDSVTN--LAGVSLTGPTTAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTT 302
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT K
Sbjct: 303 NKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 344
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TM Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 113 SSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 172
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K S I V +A S+ +A L
Sbjct: 173 EAEEAIKGLNGQKPLGASEPITVKFANNPSQKTGQALL 210
>sp|P26378|ELAV4_HUMAN ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2
Length = 380
Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/361 (53%), Positives = 247/361 (68%), Gaps = 56/361 (15%)
Query: 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA 81
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DA
Sbjct: 41 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 82 ERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
E+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IIT
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 160
Query: 142 SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPI 201
SRIL D++ +S+G+GF+RF++ IEAE A++ LNG P GA+EPI
Sbjct: 161 SRILVDQVTG---------------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 205
Query: 202 TVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA-RF------------- 247
TVKFAN+P+ ++ +QA + + + R + PLHH A RF
Sbjct: 206 TVKFANNPSQKS--------SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVK 257
Query: 248 --------------KFAPLTADLLNNSM---LPPKSLHGSGWCIFVYNLAPETEDNVLWQ 290
+F+P+T D + + + +P + G+GWCIFVYNL+P+++++VLWQ
Sbjct: 258 RLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHT--GTGWCIFVYNLSPDSDESVLWQ 315
Query: 291 LFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350
LFGPFGAV NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+
Sbjct: 316 LFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 375
Query: 351 K 351
K
Sbjct: 376 K 376
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 222
>sp|O09032|ELAV4_RAT ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1
Length = 373
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/361 (53%), Positives = 247/361 (68%), Gaps = 56/361 (15%)
Query: 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA 81
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 82 ERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
E+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IIT
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 153
Query: 142 SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPI 201
SRIL D++ +S+G+GF+RF++ IEAE A++ LNG P GA+EPI
Sbjct: 154 SRILVDQVTG---------------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 198
Query: 202 TVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA-RF------------- 247
TVKFAN+P+ ++ +QA + + + R + PLHH A RF
Sbjct: 199 TVKFANNPSQKS--------SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVK 250
Query: 248 --------------KFAPLTADLLNNSM---LPPKSLHGSGWCIFVYNLAPETEDNVLWQ 290
+F+P+T D + + + +P + G+GWCIFVYNL+P+++++VLWQ
Sbjct: 251 RLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHT--GTGWCIFVYNLSPDSDESVLWQ 308
Query: 291 LFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350
LFGPFGAV NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+
Sbjct: 309 LFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 368
Query: 351 K 351
K
Sbjct: 369 K 369
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 178 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 215
>sp|Q61701|ELAV4_MOUSE ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1
Length = 385
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/361 (53%), Positives = 247/361 (68%), Gaps = 56/361 (15%)
Query: 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA 81
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DA
Sbjct: 46 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 82 ERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
E+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IIT
Sbjct: 106 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIIT 165
Query: 142 SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPI 201
SRIL D++ +S+G+GF+RF++ IEAE A++ LNG P GA+EPI
Sbjct: 166 SRILVDQVTG---------------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 210
Query: 202 TVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA-RF------------- 247
TVKFAN+P+ ++ +QA + + + R + PLHH A RF
Sbjct: 211 TVKFANNPSQKS--------SQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVK 262
Query: 248 --------------KFAPLTADLLNNSM---LPPKSLHGSGWCIFVYNLAPETEDNVLWQ 290
+F+P+T D + + + +P + G+GWCIFVYNL+P+++++VLWQ
Sbjct: 263 RLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHT--GTGWCIFVYNLSPDSDESVLWQ 320
Query: 291 LFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350
LFGPFGAV NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+
Sbjct: 321 LFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 380
Query: 351 K 351
K
Sbjct: 381 K 381
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 227
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 189/335 (56%), Positives = 239/335 (71%), Gaps = 26/335 (7%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +
Sbjct: 60 SNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK 119
Query: 80 DAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
DAE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG I
Sbjct: 120 DAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRI 179
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
ITSRIL D ++ +S+G+GF+RF++ IEAE A++ LNG P GA+E
Sbjct: 180 ITSRILVD---------------QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPPGATE 224
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA-RF-KFAPLTADLL 257
PITVKFAN+P+ + + + + R + PL A RF +F+P+T D +
Sbjct: 225 PITVKFANNPSQKVN--------HTILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDGM 276
Query: 258 NN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFG 316
+ + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+RD T KCKGFG
Sbjct: 277 TSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG 336
Query: 317 FVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
FV MTNYDEA AI SLNGY LGDR+LQVSFKT K
Sbjct: 337 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 371
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/346 (55%), Positives = 240/346 (69%), Gaps = 38/346 (10%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D++ IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 153 TSRILVDQVTG---------------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 201 ITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA-RF------------ 247
ITVKFAN+P+ + QA + + + R + PL A RF
Sbjct: 198 ITVKFANNPSQKTN--------QAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGV 249
Query: 248 -KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVR 305
+F+P+T D + + H G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+R
Sbjct: 250 KRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIR 309
Query: 306 DPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
D T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 310 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL----------YVSGLPKHMTQE 127
+AE AI LNG K + I V +A S+ +A L Y L + +
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 237
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S + D M S
Sbjct: 238 RLDNLLNMAYGVKRFSPMTIDGMTS 262
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/346 (55%), Positives = 240/346 (69%), Gaps = 38/346 (10%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D++ IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 153 TSRILVDQVTG---------------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 201 ITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA-RF------------ 247
ITVKFAN+P+ + QA + + + R + PL A RF
Sbjct: 198 ITVKFANNPSQKTN--------QAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGV 249
Query: 248 -KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVR 305
+F+P+T D + + H G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+R
Sbjct: 250 KRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIR 309
Query: 306 DPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
D T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 310 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 13/145 (8%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL----------YVSGLPKHMTQE 127
+AE AI LNG K + I V +A S+ +A L Y L + +
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 237
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S + D M S
Sbjct: 238 RLDNLLNMAYGVKRFSPMTIDGMTS 262
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 377 bits (969), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/347 (55%), Positives = 240/347 (69%), Gaps = 39/347 (11%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D++ IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 153 TSRILVDQVTG---------------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 201 ITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA-RF------------ 247
ITVKFAN+P+ + QA + + + R + PL A RF
Sbjct: 198 ITVKFANNPSQKTN--------QAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGV 249
Query: 248 --KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVV 304
+F+P+T D + + H G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+
Sbjct: 250 KSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVI 309
Query: 305 RDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
RD T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 310 RDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 356
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAIL 215
>sp|Q8CH84|ELAV2_RAT ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1
Length = 359
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/346 (55%), Positives = 239/346 (69%), Gaps = 38/346 (10%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLI NY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D++ IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 153 TSRILVDQVTG---------------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 201 ITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA-RF------------ 247
ITVKFAN+P+ + QA + + + R + PL A RF
Sbjct: 198 ITVKFANNPSQKTN--------QAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGV 249
Query: 248 -KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVR 305
+F+P+T D + + H G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+R
Sbjct: 250 KRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIR 309
Query: 306 DPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
D T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 310 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
>sp|Q7SZT7|ELAV4_XENLA ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1
Length = 400
Score = 369 bits (947), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/376 (51%), Positives = 246/376 (65%), Gaps = 71/376 (18%)
Query: 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA---------------- 65
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T
Sbjct: 46 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKW 105
Query: 66 -------------QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKR 112
QSLGYGFVNY +DAE+AI LNGL+LQ K+IKVSYARPSS +I+
Sbjct: 106 KPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 165
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
ANLYVSGLPK MTQ++LE LF YG IITSRIL D++ +S+G+G
Sbjct: 166 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG---------------VSRGVG 210
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAA 232
F+RF++ IEAE A++ LNG P GA+EPITVKFAN+P+ + +QA + + +
Sbjct: 211 FIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKT--------SQALLSQLYQS 262
Query: 233 AMRHFGNPLHHSA-RFK-------------FAPLTADLLNNSM---LPPKSLHGSGWCIF 275
R + PLHH A RF+ F+P+T D + + + +P + G+GWCIF
Sbjct: 263 PNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT--GTGWCIF 320
Query: 276 VYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335
VYNL+P+++++VLWQLFGPFGAV NVKV+RD T KCKGFGFV MTNYDEA AI SLNG
Sbjct: 321 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 380
Query: 336 YALGDRLLQVSFKTHK 351
Y LGDR+LQVSFKT+K
Sbjct: 381 YRLGDRVLQVSFKTNK 396
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 159 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 218
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVS------GLPKHMTQE- 127
+AE AI LNG K + I V +A S+ +A LY S G H Q
Sbjct: 219 EAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQSPNRRYPGPLHHQAQRF 278
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S I D M S
Sbjct: 279 RLDNLLNMAYGVKRFSPITIDGMTS 303
>sp|A4QNI8|ELAV4_XENTR ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1
Length = 400
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/376 (51%), Positives = 246/376 (65%), Gaps = 71/376 (18%)
Query: 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA---------------- 65
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T
Sbjct: 46 TDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKW 105
Query: 66 -------------QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKR 112
QSLGYGFVNY +DAE+AI LNGL+LQ K+IKVSYARPSS +I+
Sbjct: 106 KPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 165
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
ANLYVSGLPK MTQ++LE LF YG IITSRIL D++ +S+G+G
Sbjct: 166 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG---------------VSRGVG 210
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAA 232
F+RF++ IEAE A++ LNG P GA+EPITVKFAN+P+ + +QA + + +
Sbjct: 211 FIRFDKRIEAEEAIKGLNGQKPSGAAEPITVKFANNPSQKT--------SQALLSQLYQS 262
Query: 233 AMRHFGNPLHHSA-RFK-------------FAPLTADLLNNSM---LPPKSLHGSGWCIF 275
R + PLHH A RF+ F+P+T D + + + +P + G+GWCIF
Sbjct: 263 PNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHT--GTGWCIF 320
Query: 276 VYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335
VYNL+P+++++VLWQLFGPFGAV NVKV+RD T KCKGFGFV MTNYDEA AI SLNG
Sbjct: 321 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 380
Query: 336 YALGDRLLQVSFKTHK 351
Y LGDR+LQVSFKT+K
Sbjct: 381 YRLGDRVLQVSFKTNK 396
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 13/145 (8%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 159 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 218
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVS------GLPKHMTQE- 127
+AE AI LNG K + I V +A S+ +A LY S G H Q
Sbjct: 219 EAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQSPNRRYPGPLHHQAQRF 278
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S I D M S
Sbjct: 279 RLDNLLNMAYGVKRFSPITIDGMTS 303
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/353 (53%), Positives = 241/353 (68%), Gaps = 25/353 (7%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT-AQS 67
NT ++ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QS
Sbjct: 48 NTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQS 107
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQE 127
LGYGFVNY +DAE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ+
Sbjct: 108 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 167
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
+LE LF YG IITSRIL D ++ +S+G+GF+RF++ IEAE A++
Sbjct: 168 ELEQLFSQYGRIITSRILVD---------------QVTGVSRGVGFIRFDKRIEAEEAIK 212
Query: 188 ELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRH---FAAAMRHFG-----N 239
LNG P GA+EPITVKFAN+P+ + + Q+ R+ A + F N
Sbjct: 213 GLNGQKPPGATEPITVKFANNPSQKVNHTILSQLYQSPNRRYPGPLAQQAQRFRLDNLLN 272
Query: 240 PLHHSARFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAV 298
+ + +F+P+ D + + + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV
Sbjct: 273 MAYGGIKSRFSPMAIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMFGPFGAV 332
Query: 299 QNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT K
Sbjct: 333 TNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 385
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3
Length = 367
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/352 (52%), Positives = 238/352 (67%), Gaps = 46/352 (13%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQ+E + LF S+G++ESCKL+RDK T QSLGYGFVNY DA+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVSGLPK M+Q+++E LF YG IITS
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D ++ +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 155 RILVD---------------QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 203 VKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHH-SARF-------------- 247
VKFAN+P+ + QA + ++ R + PLHH + RF
Sbjct: 200 VKFANNPSQKT--------GQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKS 251
Query: 248 ------KFAPLTADLLNN--SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQ 299
+F+P+ D ++ + G+GWCIFVYNL+PE +++VLWQLFGPFGAV
Sbjct: 252 PLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVT 311
Query: 300 NVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LG+R+LQVSFKT K
Sbjct: 312 NVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TM+Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLK 92
+AE AI LNG K
Sbjct: 178 EAEEAIKGLNGQK 190
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 365 bits (937), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/328 (55%), Positives = 229/328 (69%), Gaps = 27/328 (8%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NLIVNY+PQ MTQEEL+ LFSS+GEVES KLIRDK SLGYGFVNY +DAERAI
Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIS 79
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP+ MTQ+D+E++F +G II SR+L
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
D+ +S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA
Sbjct: 140 DQTTG---------------LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Query: 207 NSPAGRAKALAANLNAQAAAMRH-FAAAMRHFGNPLHHSA-RFKFAPLTADLLNN-SMLP 263
+P N N A + + + R FG P+HH A RF+F+P+ D ++ S +
Sbjct: 185 ANP---------NQNKNMALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGISGVN 235
Query: 264 PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY 323
SGWCIF+YNL + ++ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY
Sbjct: 236 VPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 324 DEAVFAIQSLNGYALGDRLLQVSFKTHK 351
+EA AI SLNGY LGD++LQVSFKT+K
Sbjct: 296 EEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 45/68 (66%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+++NL ++ +P+TMTQ++++ +FS G + + +++ D+TT S G F+ + + +AE A
Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163
Query: 85 IIELNGLK 92
I NG K
Sbjct: 164 ITSFNGHK 171
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 17/104 (16%)
Query: 103 ARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTP 162
A + I R NL V+ LP++MTQE+L +LF G + +++++ DK+A ++
Sbjct: 10 AEDCRDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSL-------- 61
Query: 163 EIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
G GFV + +AE A+ LNG + S+ I V +A
Sbjct: 62 -------GYGFVNYVTAKDAERAISTLNGLRLQ--SKTIKVSYA 96
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1
Length = 367
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 186/353 (52%), Positives = 237/353 (67%), Gaps = 46/353 (13%)
Query: 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA 81
++ +NLIVNY+PQ MTQ+E + LF S+G++ESCKL+RDK T QSLGYGFVNY DA
Sbjct: 34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 82 ERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
++AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVSGLPK M+Q+++E LF YG IIT
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIIT 153
Query: 142 SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPI 201
SRIL D+ +S+G+GF+RF++ IEAE A++ LNG P GA+EPI
Sbjct: 154 SRILLDQATG---------------VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPI 198
Query: 202 TVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHH-SARF------------- 247
TVKFAN+P+ + QA + ++ R + PLHH + RF
Sbjct: 199 TVKFANNPSQKT--------GQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVK 250
Query: 248 -------KFAPLTADLLNN--SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAV 298
+F+P+ D ++ + G+GWCIFVYNL+PE +++VLWQLFGPFGAV
Sbjct: 251 SPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAV 310
Query: 299 QNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LG+R+LQVSFKT K
Sbjct: 311 TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 48/73 (65%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TM+Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLK 92
+AE AI LNG K
Sbjct: 178 EAEEAIKGLNGQK 190
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2
Length = 326
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/330 (55%), Positives = 231/330 (70%), Gaps = 31/330 (9%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK SLGYGFVNY +DAERAI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP+ MTQ+D+E++F +G II SR+L
Sbjct: 80 TLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLV 139
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
D+ +S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA
Sbjct: 140 DQTTG---------------LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFA 184
Query: 207 NSPAGRAKALAANLNAQAAAMRH-FAAAMRHFGNPLHHSA-RFKFAPLTADLLNNSMLPP 264
+P N N A + + + R FG P+HH A RF+F+P+ D + S L
Sbjct: 185 ANP---------NQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHM--SGLSG 233
Query: 265 KSLHG---SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMT 321
++ G SGWCIF+YNL + ++ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MT
Sbjct: 234 VNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMT 293
Query: 322 NYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
NY+EA AI SLNGY LGD++LQVSFKT+K
Sbjct: 294 NYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 45/68 (66%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+++NL ++ +P+TMTQ++++ +FS G + + +++ D+TT S G F+ + + +AE A
Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEA 163
Query: 85 IIELNGLK 92
I NG K
Sbjct: 164 ITSFNGHK 171
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 17/97 (17%)
Query: 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISK 169
I R NL V+ LP++MTQ++L +LF G + +++++ DK+A S
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGH---------------SL 61
Query: 170 GIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
G GFV + +AE A+ LNG + S+ I V +A
Sbjct: 62 GYGFVNYVTAKDAERAINTLNGLRLQ--SKTIKVSYA 96
>sp|Q6GLB5|ELAV1_XENTR ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1
Length = 326
Score = 362 bits (929), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 181/328 (55%), Positives = 228/328 (69%), Gaps = 27/328 (8%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK SLGYGFVNY +DAERAI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
LNGL+LQ+K+IKVS ARPSSE+IK ANLY+SGLP+ MTQ+D+E++F P+G II SR+L
Sbjct: 80 TLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLV 139
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
D+ +S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA
Sbjct: 140 DQATG---------------LSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
Query: 207 NSPAGRAKALAANLNAQAAAMRHFA-AAMRHFGNPLHHSA-RFKFAPLTADLLNN-SMLP 263
+P N N A + + R FG P+HH A RF+F+P+ D +++ S +
Sbjct: 185 ANP---------NQNKNMALLSQLCHSPARRFGGPVHHQAQRFRFSPMGVDHMSSISGVN 235
Query: 264 PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY 323
S SGWCIF+YNL + ++ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY
Sbjct: 236 VASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 324 DEAVFAIQSLNGYALGDRLLQVSFKTHK 351
+EA AI SLNGY LGD+ LQV FKT K
Sbjct: 296 EEAAMAIASLNGYRLGDKTLQVFFKTSK 323
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 43/68 (63%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+++NL ++ +P+TMTQ++++ +F G + + +++ D+ T S G F+ + + +AE A
Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEA 163
Query: 85 IIELNGLK 92
I NG K
Sbjct: 164 IASFNGHK 171
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 15/84 (17%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
+ I R NL V+ LP++MTQ++L +LF G + +++++ DK+A ++
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL------------- 61
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
G GFV + +AE A+ LNG
Sbjct: 62 --GYGFVNYLNAKDAERAINTLNG 83
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 36 QTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95
Q + L +F G V + K+IRD T + G+GFV E+A AI LNG +L +
Sbjct: 253 QDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGD 312
Query: 96 KSIKVSYARPSS 107
K+++V + S
Sbjct: 313 KTLQVFFKTSKS 324
>sp|Q1JQ73|ELV1A_XENLA ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-a PE=1 SV=1
Length = 337
Score = 359 bits (921), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 183/339 (53%), Positives = 231/339 (68%), Gaps = 38/339 (11%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK-----------TTAQSLGYGFVNY 75
+NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK + SLGYGFVNY
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNY 79
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+DAERAI LNGL+LQ+K+IKVS+ARPSSE+IK ANLY+SGLP+ MTQ+D+E++F P
Sbjct: 80 LNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDANLYISGLPRTMTQKDVEDMFLP 139
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPE 195
+G II SR+L D+ +S+G+ F+RF++ EAE A+ NG P
Sbjct: 140 FGHIINSRVLVDQATG---------------LSRGVAFIRFDKRSEAEEAIASFNGHKPP 184
Query: 196 GASEPITVKFANSPAGRAKALAANLNAQAAAMRHFA-AAMRHFGNPLHHSA-RFKFAPLT 253
G+SEPITVKFA +P N N A + + R FG P+HH A RF+F+P+
Sbjct: 185 GSSEPITVKFAANP---------NQNKNVALLSQICHSPARRFGGPVHHQAQRFRFSPMG 235
Query: 254 ADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKC 312
D +++ S + S SGWCIFVYNL + ++ +LWQ+FGPFGAV NVKV+RD T KC
Sbjct: 236 VDHMSSISSVNVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKC 295
Query: 313 KGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
KGFGFV MTNY+EA AI SLNGY LGD+ LQVSFKT K
Sbjct: 296 KGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKTSK 334
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 57/103 (55%), Gaps = 14/103 (13%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
+ I R NL V+ LP++MTQ++L +LF G + +++++ DK+A +RS +
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRS--------SSL 66
Query: 168 SK----GIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
SK G GFV + +AE A+ LNG + S+ I V FA
Sbjct: 67 SKGHSLGYGFVNYLNAKDAERAINTLNGLRLQ--SKTIKVSFA 107
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 67/219 (30%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+++NL ++ +P+TMTQ++++ +F G + + +++ D+ T S G F+ + + +AE A
Sbjct: 115 KDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEA 174
Query: 85 IIELNGLKL----------------QNKSI------------------------------ 98
I NG K QNK++
Sbjct: 175 IASFNGHKPPGSSEPITVKFAANPNQNKNVALLSQICHSPARRFGGPVHHQAQRFRFSPM 234
Query: 99 ------KVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASE 152
+S +S A ++V L + + L +F P+G + +++ D ++
Sbjct: 235 GVDHMSSISSVNVASSATSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNK 294
Query: 153 NVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 295 ---------------CKGFGFVTMTNYEEAAMAIASLNG 318
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
+ V + Q + L +F G V + K+IRD T + G+GFV E+A AI L
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 89 NGLKLQNKSIKVSYARPSS 107
NG +L +K+++VS+ S
Sbjct: 317 NGYRLGDKTLQVSFKTSKS 335
>sp|Q5U259|ELV1B_XENLA ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-b PE=1 SV=1
Length = 326
Score = 357 bits (917), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 182/328 (55%), Positives = 230/328 (70%), Gaps = 27/328 (8%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK SLGYGFVNY +DAERAI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
LNGL+LQ+K+IKVS+ARPSSE IK ANLY+SGLP+ MTQ+D+E++F P+G II SR+L
Sbjct: 80 TLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLV 139
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
D+ +S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA
Sbjct: 140 DQATG---------------LSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
Query: 207 NSP-AGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA-RFKFAPLTADLLNN-SMLP 263
+P + AL + + A R FG P+HH A RF+F+P+ D +++ S +
Sbjct: 185 ANPNQSKNMALLSQICHSPA---------RRFGGPVHHQAQRFRFSPMGVDHMSSISSVN 235
Query: 264 PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY 323
S SGWCIF+YNL + ++ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY
Sbjct: 236 VASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNY 295
Query: 324 DEAVFAIQSLNGYALGDRLLQVSFKTHK 351
+EA AI SLNGY LGD+ LQVSFKT K
Sbjct: 296 EEAAMAIASLNGYRLGDKTLQVSFKTSK 323
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 43/68 (63%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+++NL ++ +P+TMTQ++++ +F G + + +++ D+ T S G F+ + + +AE A
Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEA 163
Query: 85 IIELNGLK 92
I NG K
Sbjct: 164 IASFNGHK 171
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 43 LQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102
L +F G V + K+IRD T + G+GFV E+A AI LNG +L +K+++VS+
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 319
Query: 103 ARPSS 107
S
Sbjct: 320 KTSKS 324
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 17/99 (17%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
+ I R NL V+ LP++MTQ++L +LF G + +++++ DK+A ++
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL------------- 61
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
G GFV + +AE A+ LNG + S+ I V FA
Sbjct: 62 --GYGFVNYLNAKDAERAINTLNGLRLQ--SKTIKVSFA 96
>sp|P16914|ELAV_DROME Protein elav OS=Drosophila melanogaster GN=elav PE=2 SV=1
Length = 483
Score = 350 bits (897), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 190/378 (50%), Positives = 247/378 (65%), Gaps = 59/378 (15%)
Query: 9 NTTQSHRSTYQSDVN---EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKT-- 63
NT + S Q+ N E +NLIVNY+PQTMT++E++ LFSSVGE+ES KLIRDK+
Sbjct: 128 NTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQV 187
Query: 64 -----------TAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKR 112
QSLGYGFVNY R +DAE+A+ LNGL+LQNK+IKVS+ARPSS+AIK
Sbjct: 188 YIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKG 247
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
ANLYVSGLPK MTQ++LE +F P+G IITSRIL + A + ++ KG+G
Sbjct: 248 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQN--AGNDTQT------------KGVG 293
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAK----ALAANLNAQAAAMR 228
F+RF++ EA A+ LNGT P ++PI VKF+N+P +K L A LN Q
Sbjct: 294 FIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQL---- 349
Query: 229 HFAAAMRHFGNPLH---HSARFKFAPLTADLLNNSMLP------------PKSLHGSGWC 273
+R G +H + +F+P+ D+L+ MLP S G +
Sbjct: 350 -----VRRIGGAMHTPVNKGLARFSPMAGDMLD-VMLPNGLGAAAAAATTLASGPGGAYP 403
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IF+YNLAPETE+ LWQLFGPFGAVQ+VK+V+DP T +CKG+GFV MTNYDEA AI++L
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 334 NGYALGDRLLQVSFKTHK 351
NGY +G+R+LQVSFKT+K
Sbjct: 464 NGYTMGNRVLQVSFKTNK 481
>sp|P23241|ELAV_DROVI Protein elav OS=Drosophila virilis GN=elav PE=3 SV=1
Length = 519
Score = 350 bits (897), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 185/360 (51%), Positives = 240/360 (66%), Gaps = 56/360 (15%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKT-------------TAQSLGY 70
E +NLIVNY+PQTMT++E++ LFSSVGE+ES KLIRDK+ QSLGY
Sbjct: 182 ETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGY 241
Query: 71 GFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLE 130
GFVNY R +DAE+A+ LNGL+LQNK+IKVS+ARPSS+AIK ANLYVSGLPK MTQ++LE
Sbjct: 242 GFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGANLYVSGLPKTMTQQELE 301
Query: 131 NLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190
+F P+G IITSRIL + A + ++ KG+GF+RF++ EA A+ LN
Sbjct: 302 AIFAPFGAIITSRILQN--AGNDTQT------------KGVGFIRFDKREEATRAIIALN 347
Query: 191 GTIPEGASEPITVKFANSPAGRAK----ALAANLNAQAAAMRHFAAAMRHFGNPLH---H 243
GT P ++PI VKF+N+P +K L A LN Q +R G +H +
Sbjct: 348 GTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQL---------VRRIGGAMHTPVN 398
Query: 244 SARFKFAPLTADLLNNSMLP------------PKSLHGSGWCIFVYNLAPETEDNVLWQL 291
+F+P+ D+L+ MLP S G + IF+YNLAPETE+ LWQL
Sbjct: 399 KGLARFSPMAGDMLD-VMLPNGLGAAAAAATTLASGPGGAYPIFIYNLAPETEEAALWQL 457
Query: 292 FGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
FGPFGAVQ+VK+V+DP T +CKG+GFV MTNYDEA AI++LNGY +G+R+LQVSFKT+K
Sbjct: 458 FGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNK 517
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 173 bits (439), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/189 (45%), Positives = 122/189 (64%), Gaps = 16/189 (8%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NLIVNY+PQ MT EL LF ++G + +C+++RD T S GY FV++ D++RAI
Sbjct: 110 TNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIK 169
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
LNG+ ++NK +KVSYARP E+IK NLYV+ LP+ +T + L+ +F YG I+ IL
Sbjct: 170 SLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILR 229
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
DK+ +G P +G+ FVRFN+ EA+ A+ LN IPEGAS+P+TV+ A
Sbjct: 230 DKL---------TGKP------RGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 274
Query: 207 NSPAGRAKA 215
G+AKA
Sbjct: 275 EE-HGKAKA 282
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 50/96 (52%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+++NL V +P+T+T ++L +F G + ++RDK T + G FV + + E+A+ A
Sbjct: 194 KDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 253
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGL 120
I LN + + S ++ +A Y+S L
Sbjct: 254 ISALNNVIPEGASQPLTVRLAEEHGKAKAQHYMSQL 289
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
+G + V L + D L+ LF G + +++RD +T G+ FV ++ A
Sbjct: 108 NGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRA 167
Query: 330 IQSLNGYALGDRLLQVSF 347
I+SLNG + ++ L+VS+
Sbjct: 168 IKSLNGITVRNKRLKVSY 185
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D+ L +FG +G + ++RD T K +G FV +EA AI +L
Sbjct: 198 LYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 257
Query: 334 N 334
N
Sbjct: 258 N 258
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 136/238 (57%), Gaps = 26/238 (10%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
D N+NLIVNY+PQ MT EL LF ++G + +C+++RD T S GY FV++ D
Sbjct: 121 DQRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMD 180
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
++RAI LNG+ ++NK +KVSYARP E+IK NLYV+ LP+ +T + L+ +F YG+I+
Sbjct: 181 SQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIV 240
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
IL DK+ +G P +G+ FVR+N+ EA+ A+ LN IPEG S+P
Sbjct: 241 QKNILRDKL---------TGRP------RGVAFVRYNKREEAQEAISALNNVIPEGGSQP 285
Query: 201 ITVKFANSPAGRAKAL---------AANLNAQAAAMRHFA-AAMRHFGNPLHHSARFK 248
++V+ A G+AKA +AN H A M H G + RF+
Sbjct: 286 LSVRLAQE-HGKAKAAHFMSQIGVPSANAPPPPPPPPHMAFNNMVHRGRSIKSQQRFQ 342
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V L + D L+ LF G + +++RD +T G+ FV T+ ++ AI+ L
Sbjct: 129 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVL 188
Query: 334 NGYALGDRLLQVSF 347
NG + ++ L+VS+
Sbjct: 189 NGITVRNKRLKVSY 202
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D+ L +FG +G++ ++RD T + +G FV +EA AI +L
Sbjct: 215 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 274
Query: 334 N 334
N
Sbjct: 275 N 275
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 172 bits (435), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/196 (43%), Positives = 125/196 (63%), Gaps = 16/196 (8%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
+D N+NLIVNY+PQ MT EL LF ++G + +C+++RD T S GY FV++
Sbjct: 118 NDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEM 177
Query: 80 DAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
D++RAI LNG+ ++NK +KVSYARP E+IK NLYV+ LP+ +T + L+ +F YG+I
Sbjct: 178 DSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSI 237
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
+ IL DK+ +G P +G+ FVR+N+ EA+ A+ LN IPEG S+
Sbjct: 238 VQKNILRDKL---------TGRP------RGVAFVRYNKREEAQEAISALNNVIPEGGSQ 282
Query: 200 PITVKFANSPAGRAKA 215
P++V+ A G+AKA
Sbjct: 283 PLSVRLAEE-HGKAKA 297
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 253 TADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKC 312
+ DL+N+ P++ S + V L + D L+ LF G + +++RD +T
Sbjct: 113 SDDLMND----PRA---SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYS 165
Query: 313 KGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347
G+ FV T+ ++ AI+ LNG + ++ L+VS+
Sbjct: 166 FGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 200
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D+ L +FG +G++ ++RD T + +G FV +EA AI +L
Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272
Query: 334 N 334
N
Sbjct: 273 N 273
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 82/180 (45%), Positives = 116/180 (64%), Gaps = 15/180 (8%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NLIVNY+PQ MT EL LF + G + +C++++D T S GY FV++ DA+ AI
Sbjct: 85 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 144
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
LNG+ ++NK +KVSYARP E+IK NLYV+ LP+ +T ++LE +F YG I+ IL
Sbjct: 145 SLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILR 204
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
DK+ +G P +G+ FVRFN+ EA+ A+ LN IPEGAS+P+TV+ A
Sbjct: 205 DKL---------TGKP------RGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 249
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+++NL V +P+T+T +EL+ +F G + ++RDK T + G FV + + E+A+ A
Sbjct: 169 KDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEA 228
Query: 85 IIELNGL 91
I LN +
Sbjct: 229 ISALNNV 235
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
+G + V L + D L+ LF G + ++++D +T G+ FV + +A A
Sbjct: 83 NGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNA 142
Query: 330 IQSLNGYALGDRLLQVSF 347
I+SLNG + ++ L+VS+
Sbjct: 143 IKSLNGVTVRNKRLKVSY 160
Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D+ L ++FG +G + ++RD T K +G FV +EA AI +L
Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 232
Query: 334 N 334
N
Sbjct: 233 N 233
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 120/189 (63%), Gaps = 16/189 (8%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NLIVNY+PQ MT EL LF + G + +C++++D T S GY FV++ DA+ AI
Sbjct: 102 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIK 161
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
+NG+ ++NK +KVSYARP E+IK NLYV+ LP+ +T ++LE +F YG I+ IL
Sbjct: 162 TVNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILR 221
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
DK+ +G P +G+ FVRFN+ EA+ A+ LN IPEGAS+P+TV+ A
Sbjct: 222 DKL---------TGRP------RGVAFVRFNKREEAQEAISALNNVIPEGASQPLTVRLA 266
Query: 207 NSPAGRAKA 215
G+ KA
Sbjct: 267 EE-HGKMKA 274
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+++NL V +P+T+T +EL+ +F G + ++RDK T + G FV + + E+A+ A
Sbjct: 186 KDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEA 245
Query: 85 IIELNGL 91
I LN +
Sbjct: 246 ISALNNV 252
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166
++A+ NL V+ LP+ MT +L LFR G I T RI+ D + +G
Sbjct: 96 TQAVNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKD---------YKTG------ 140
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNG 191
S G FV F I+A++A++ +NG
Sbjct: 141 YSFGYAFVDFASEIDAQNAIKTVNG 165
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D+ L ++FG +G + ++RD T + +G FV +EA AI +L
Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISAL 249
Query: 334 N 334
N
Sbjct: 250 N 250
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 42/78 (53%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
+G + V L + D L+ LF G + ++++D +T G+ FV + +A A
Sbjct: 100 NGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNA 159
Query: 330 IQSLNGYALGDRLLQVSF 347
I+++NG + ++ L+VS+
Sbjct: 160 IKTVNGITVRNKRLKVSY 177
>sp|O01671|SXL_MEGSC Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3
Length = 321
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/200 (43%), Positives = 120/200 (60%), Gaps = 19/200 (9%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M N+T S S N +NLIVNY+PQ M EL LF ++G + +C+++RD T
Sbjct: 62 MANSTNS----LNSGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGY 117
Query: 67 SLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQ 126
S GYGFV++ DA RAI LNG+ ++NK IKVS+ARP E ++ NLYV+ L + +T
Sbjct: 118 SYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTNLYVTNLSRSITD 177
Query: 127 EDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAM 186
E LE +F YG I+ IL DK +GTP +G+ F+RFN+ EA+ A+
Sbjct: 178 EQLETIFGKYGQIVQKNILRDKH---------TGTP------RGVAFIRFNKREEAQEAI 222
Query: 187 QELNGTIPEGASEPITVKFA 206
LN IPEG ++P+TV+ A
Sbjct: 223 SALNNVIPEGGTQPLTVRVA 242
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
SG + V L + +D L+ LF G + +++RD +T G+GFV + +A+ A
Sbjct: 76 SGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRA 135
Query: 330 IQSLNGYALGDRLLQVSF 347
I +LNG + ++ ++VSF
Sbjct: 136 INNLNGITVRNKRIKVSF 153
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL+ D L +FG +G + ++RD T +G F+ +EA AI +L
Sbjct: 166 LYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISAL 225
Query: 334 N 334
N
Sbjct: 226 N 226
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/332 (28%), Positives = 145/332 (43%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FSS G + SCK+ D ++ QS GYGFV Y E A++AI +
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183
Query: 88 LNGLKLQNKSIKVS-YAR-----PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
LNG+ L +K + V + R ++ K N+YV L + T +DL+N F YG I +
Sbjct: 184 LNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITS 243
Query: 142 SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPI 201
+ ++ D SKG GFV F +A A++ LNG
Sbjct: 244 AVVMKDGEGK----------------SKGFGFVNFENADDAARAVESLNGH--------- 278
Query: 202 TVKFANSP--AGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
KF + GR AQ + R +R+ N + +F+ + L
Sbjct: 279 --KFDDKEWYVGR---------AQKKSERETELRVRYEQNLKEAADKFQSSNL------- 320
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
+V NL P D L ++F PFG V + KV+RDP KG GFV
Sbjct: 321 ---------------YVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNG-TSKGSGFVA 364
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
+EA A+ L+G + + L V+ K
Sbjct: 365 FATPEEATEAMSQLSGKMIESKPLYVAIAQRK 396
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 108/223 (48%), Gaps = 41/223 (18%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + ++ T ++L++ F G++ S +++D +S G+GFVN+ +DA RA+
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVE 273
Query: 87 ELNGLKLQNKSIKVSYARPSSE------------------AIKRANLYVSGLPKHMTQED 128
LNG K +K V A+ SE + +NLYV L ++ E
Sbjct: 274 SLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEK 333
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L+ +F P+GT+ +S+++ D +GT SKG GFV F EA AM +
Sbjct: 334 LKEIFSPFGTVTSSKVMRDP----------NGT------SKGSGFVAFATPEEATEAMSQ 377
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFA 231
L+G + E S+P+ V A R + L AQ + +R A
Sbjct: 378 LSGKMIE--SKPLYVAIAQ----RKEDRRVRLQAQFSQVRPVA 414
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 18/170 (10%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
N++L V + +T +L F +G V + ++ RD T +SLGYG+VN+ +DA RAI
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
ELN + L K I+V Y+ PS N+++ L + + + L + F +G I++ +
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 154
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+ D SKG GFV++ A+ A+++LNG +
Sbjct: 155 VAVDSSGQ----------------SKGYGFVQYANEESAQKAIEKLNGML 188
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
++V +L D+ L+ FG G V V+V RD T + G+G+V TN +A AIQ
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 333 LNGYALGDRLLQVSFKTHKP 352
LN L + ++V + P
Sbjct: 97 LNYIPLYGKPIRVMYSHRDP 116
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/379 (24%), Positives = 163/379 (43%), Gaps = 73/379 (19%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+S+L V + ++++ L +F+ VG V + ++ RD T +SL Y +VNYY DAERA+
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
LN ++ K+ ++ +++ PS N+++ L K + + L + F +G I++ +
Sbjct: 69 DTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGA------ 197
++ D S SKG GFV + A+ A+ ++NG + G
Sbjct: 129 VVTDDGNS----------------SKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGP 172
Query: 198 -------SEPITVKFAN--------------------------------SPAGRAKALA- 217
+P VKF N G++K
Sbjct: 173 FKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGF 232
Query: 218 ANLNAQAAA---MRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCI 274
AN + AA + + + H G P++ K A+L + G +
Sbjct: 233 ANFESAEAAKNVVENENGKIFH-GKPIYAGRAQKKIEREAELKHTF-----ETKYQGVNL 286
Query: 275 FVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN 334
++ N+ +++ L ++F FG + + V++D + KGFGFVC T DEA A+ +N
Sbjct: 287 YIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMN 346
Query: 335 GYALGDRLLQVSFKTHKPL 353
G +G + L V+ K +
Sbjct: 347 GRMIGTKPLYVALAQRKDI 365
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 109/260 (41%), Gaps = 44/260 (16%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + ++L+ L GE+ + ++ D +S G+GF N+ E A+ +
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVE 246
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKR--------------ANLYVSGLPKHMTQEDLENL 132
NG K I YA + + I+R NLY+ + + + L +
Sbjct: 247 NENGKIFHGKPI---YAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREV 303
Query: 133 FRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192
F +GTI ++ ++ D A+ SKG GFV + EA A+ E+NG
Sbjct: 304 FSQFGTITSAIVMKDDKAT---------------TSKGFGFVCYTAPDEATRAVTEMNGR 348
Query: 193 IPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKF--A 250
+ ++P+ V A R A L Q + F +R P + S F A
Sbjct: 349 MI--GTKPLYVALAQ----RKDIRRAQLEMQ--HQQKFKTGIRQQMPPTYGSGPVFFTPA 400
Query: 251 PLTADLLNNSMLP-PKSLHG 269
P+ ++ M+P P++ +G
Sbjct: 401 PVNPQVVYQQMMPRPRNWNG 420
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q NL + + ++ ++L+ +FS G + S +++D S G+GFV Y ++A RA
Sbjct: 282 QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRA 341
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKRANL 115
+ E+NG + K + V+ A+ + I+RA L
Sbjct: 342 VTEMNGRMIGTKPLYVALAQ--RKDIRRAQL 370
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 146/332 (43%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ S GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A + A + N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG G
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNGKELNGKQ- 260
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
I V A R L + KF + D +
Sbjct: 261 -IYVGRAQKKVERQTEL-----------------------------KRKFEQMKQDRITR 290
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
G ++V NL +D L + F PFG + + KV+ + + KGFGFVC
Sbjct: 291 Y---------QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVC 339
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
++ +EA A+ +NG + + L V+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 129/309 (41%), Gaps = 70/309 (22%)
Query: 39 TQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98
T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+ +N ++ K +
Sbjct: 23 TEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 82
Query: 99 KVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRS 156
++ +++ PS N+++ L K + + L + F +G I++ +++CD+
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG------ 136
Query: 157 FVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKAL 216
SKG GFV F AE A++++NG + K
Sbjct: 137 -----------SKGYGFVHFETQEAAERAIEKMNGML----------------LNDRKVF 169
Query: 217 AANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFV 276
++ A + F N +++
Sbjct: 170 VGRFKSRKEREAELGARAKEFTN----------------------------------VYI 195
Query: 277 YNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY 336
N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +NG
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGK 254
Query: 337 ALGDRLLQV 345
L + + V
Sbjct: 255 ELNGKQIYV 263
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSE---AIKR---------------ANLYVSGLPKHMTQED 128
E+NG +L K I V A+ E +KR NLYV L + E
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L F P+GTI +++++ E R SKG GFV F+ EA A+ E
Sbjct: 310 LRKEFSPFGTITSAKVMM-----EGGR------------SKGFGFVCFSSPEEATKAVTE 352
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
+NG I A++P+ V A R L + A++R
Sbjct: 353 MNGRI--VATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANL 220
+ S G +V F Q +AE A+ +N + +G +P+ + ++ K+ N+
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGNI 101
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 146/332 (43%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ S GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A + A + N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG G
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNGKELNGKQ- 260
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
I V A R L + KF + D +
Sbjct: 261 -IYVGRAQKKVERQTEL-----------------------------KRKFEQMKQDRITR 290
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
G ++V NL +D L + F PFG + + KV+ + + KGFGFVC
Sbjct: 291 Y---------QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVC 339
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
++ +EA A+ +NG + + L V+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 135/321 (42%), Gaps = 70/321 (21%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
+CD+ SKG GFV F AE A++++NG +
Sbjct: 131 VCDENG-----------------SKGYGFVHFETQEAAERAIEKMNGML----------- 162
Query: 205 FANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264
K ++ A + F N
Sbjct: 163 -----LNDRKVFVGRFKSRKEREAELGARAKEFTN------------------------- 192
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV ++
Sbjct: 193 ---------VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242
Query: 325 EAVFAIQSLNGYALGDRLLQV 345
+A A+ +NG L + + V
Sbjct: 243 DAQKAVDEMNGKELNGKQIYV 263
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSE---AIKR---------------ANLYVSGLPKHMTQED 128
E+NG +L K I V A+ E +KR NLYV L + E
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L F P+GTI +++++ E R SKG GFV F+ EA A+ E
Sbjct: 310 LRKEFSPFGTITSAKVMM-----EGGR------------SKGFGFVCFSSPEEATKAVTE 352
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
+NG I A++P+ V A R L + A++R
Sbjct: 353 MNGRI--VATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANL 220
+ S G +V F Q +AE A+ +N + +G +P+ + ++ K+ N+
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGNI 101
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 146/332 (43%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ S GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A + A + N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG G
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNGKELNGKQ- 260
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
I V A R L + KF + D +
Sbjct: 261 -IYVGRAQKKVERQTEL-----------------------------KRKFEQMKQDRITR 290
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
G ++V NL +D L + F PFG + + KV+ + + KGFGFVC
Sbjct: 291 Y---------QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVC 339
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
++ +EA A+ +NG + + L V+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 135/321 (42%), Gaps = 70/321 (21%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
+CD+ SKG GFV F AE A++++NG +
Sbjct: 131 VCDENG-----------------SKGYGFVHFETQEAAERAIEKMNGML----------- 162
Query: 205 FANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264
K ++ A + F N
Sbjct: 163 -----LNDRKVFVGRFKSRKEREAELGARAKEFTN------------------------- 192
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV ++
Sbjct: 193 ---------VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242
Query: 325 EAVFAIQSLNGYALGDRLLQV 345
+A A+ +NG L + + V
Sbjct: 243 DAQKAVDEMNGKELNGKQIYV 263
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSE---AIKR---------------ANLYVSGLPKHMTQED 128
E+NG +L K I V A+ E +KR NLYV L + E
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L F P+GTI +++++ E R SKG GFV F+ EA A+ E
Sbjct: 310 LRKEFSPFGTITSAKVMM-----EGGR------------SKGFGFVCFSSPEEATKAVTE 352
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
+NG I A++P+ V A R L + A++R
Sbjct: 353 MNGRI--VATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANL 220
+ S G +V F Q +AE A+ +N + +G +P+ + ++ K+ N+
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGNI 101
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 145/332 (43%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ S GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A + A + N+Y+ + M E L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG G
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNGKELNGKQ- 260
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
I V A R L + KF + D +
Sbjct: 261 -IYVGRAQKKVERQTEL-----------------------------KRKFEQMKQDRITR 290
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
G ++V NL +D L + F PFG + + KV+ + + KGFGFVC
Sbjct: 291 Y---------QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVC 339
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
++ +EA A+ +NG + + L V+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 70/321 (21%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
+CD+ SKG GFV F AE A++++NG +
Sbjct: 131 VCDENG-----------------SKGYGFVHFETQEAAERAIEKMNGML----------- 162
Query: 205 FANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264
K ++ A + F N
Sbjct: 163 -----LNDRKVFVGRFKSRKEREAELGARAKEFTN------------------------- 192
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+++ N + +D L +LFG FG +VKV+ D ++ K KGFGFV ++
Sbjct: 193 ---------VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242
Query: 325 EAVFAIQSLNGYALGDRLLQV 345
+A A+ +NG L + + V
Sbjct: 243 DAQKAVDEMNGKELNGKQIYV 263
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSE---AIKR---------------ANLYVSGLPKHMTQED 128
E+NG +L K I V A+ E +KR NLYV L + E
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L F P+GTI +++++ E R SKG GFV F+ EA A+ E
Sbjct: 310 LRKEFSPFGTITSAKVMM-----EGGR------------SKGFGFVCFSSPEEATKAVTE 352
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
+NG I A++P+ V A R L + A++R
Sbjct: 353 MNGRI--VATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANL 220
+ S G +V F Q +AE A+ +N + +G +P+ + ++ K+ N+
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGNI 101
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 145/332 (43%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ S GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A + A + N+Y+ + M E L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG G
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNGKELNGKQ- 260
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
I V A R L + KF + D +
Sbjct: 261 -IYVGRAQKKVERQTEL-----------------------------KRKFEQMKQDRITR 290
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
G ++V NL +D L + F PFG + + KV+ + + KGFGFVC
Sbjct: 291 Y---------QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVC 339
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
++ +EA A+ +NG + + L V+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 136/321 (42%), Gaps = 70/321 (21%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
+CD+ SKG GFV F AE A++++NG +
Sbjct: 131 VCDENG-----------------SKGYGFVHFETQEAAERAIEKMNGML----------- 162
Query: 205 FANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264
K ++ A + F N
Sbjct: 163 -----LNDRKVFVGRFKSRKEREAELGARAKEFTN------------------------- 192
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+++ N + +D L +LFG FG +VKV+ D ++ K KGFGFV ++
Sbjct: 193 ---------VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242
Query: 325 EAVFAIQSLNGYALGDRLLQV 345
+A A+ +NG L + + V
Sbjct: 243 DAQKAVDEMNGKELNGKQIYV 263
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 103/220 (46%), Gaps = 38/220 (17%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSE---AIKR---------------ANLYVSGLPKHMTQED 128
E+NG +L K I V A+ E +KR NLYV L + E
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L F P+GTI +++++ E R SKG GFV F+ EA A+ E
Sbjct: 310 LRKEFSPFGTITSAKVMM-----EGGR------------SKGFGFVCFSSPEEATKAVTE 352
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
+NG I A++P+ V A R L + A++R
Sbjct: 353 MNGRI--VATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANL 220
+ S G +V F Q +AE A+ +N + +G +P+ + ++ K+ N+
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQRDPSLRKSGVGNI 101
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 144/332 (43%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ S GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A + A + N+Y+ M E L+ +F YG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ +++ D SKG GFV F +H +A+ A+ E+NG G S
Sbjct: 218 LSVKVMTDDNGK----------------SKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
+ GRA+ + Q R KF + D +
Sbjct: 262 FV---------GRAQ---KKVERQTELKR-------------------KFEQMKQDRITR 290
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
G ++V NL +D L + F PFG + + KV+ + + KGFGFVC
Sbjct: 291 Y---------QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMME--GGRSKGFGFVC 339
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
++ +EA A+ +NG + + L V+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 129/311 (41%), Gaps = 70/311 (22%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + Q +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
+CD+ SKG GFV F AE A+ ++NG +
Sbjct: 131 VCDENG-----------------SKGYGFVHFETQEAAERAIDKMNGML----------- 162
Query: 205 FANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264
K ++ A + F N
Sbjct: 163 -----LNDRKVFVGRFKSRKEREAELGARAKEFTN------------------------- 192
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+++ N + D L ++FG +G +VKV+ D K KGFGFV ++
Sbjct: 193 ---------VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHE 242
Query: 325 EAVFAIQSLNG 335
+A A+ +NG
Sbjct: 243 DAQKAVDEMNG 253
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + M E L+ +F G S K++ D +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSE---AIKR---------------ANLYVSGLPKHMTQED 128
E+NG + KS+ V A+ E +KR NLYV L + E
Sbjct: 250 EMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L F P+GTI +++++ E R SKG GFV F+ EA A+ E
Sbjct: 310 LRKEFLPFGTITSAKVMM-----EGGR------------SKGFGFVCFSSPEEATKAVTE 352
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
+NG I A++P+ V A R L + A++R
Sbjct: 353 MNGRI--VATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 141/311 (45%), Gaps = 68/311 (21%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+++L V + ++T+ L LFSS+G+V S ++ RD T +SLGY +VNY T D ERA+
Sbjct: 54 SASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 113
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
+LN ++ + ++ +++ P+ + N+++ L + + L + F +G I++ +
Sbjct: 114 EDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCK 173
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITV 203
+ D+ + SKG GFV + A++A++ +NG +
Sbjct: 174 VAQDEFGN----------------SKGYGFVHYETAEAAQNAIKHVNGML---------- 207
Query: 204 KFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLP 263
LN + + H A + KF + A+ N
Sbjct: 208 ----------------LNDKKVFVGHHIA---------KKDRQSKFEEMKANFTN----- 237
Query: 264 PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY 323
++V N+ +T + LF FG + + + RD ++ K +GFGFV T++
Sbjct: 238 ----------VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 324 DEAVFAIQSLN 334
D A A+++LN
Sbjct: 288 DNAAAAVEALN 298
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 57/252 (22%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + Q T+EE + LF GE+ S L RD + +S G+GFVN+ ++A A+
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 87 ELNGLKLQNKSIKVSYARPSSE------------AIKRA------NLYVSGLPKHMTQED 128
LN + + + V A+ E I++A NLY+ L + E
Sbjct: 296 ALNDKDFKGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEK 355
Query: 129 LENLFRPYGTIITSRILCD-------------------------------------KMAS 151
L LF YGTI +++++ D K
Sbjct: 356 LRELFSSYGTITSAKVMRDFAPESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNK 415
Query: 152 ENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAG 211
EN + SKG GFV F+ EA A+ E+N + G +P+ V A
Sbjct: 416 ENKAESKKSEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVHG--KPLYVALAQRKDV 473
Query: 212 RAKALAANLNAQ 223
R L A++ A+
Sbjct: 474 RRSQLEASIQAR 485
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L F FG + + KV +D + KG+GFV + A AI+ +
Sbjct: 145 VFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 334 NGYALGDR 341
NG L D+
Sbjct: 204 NGMLLNDK 211
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 311 KCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K KGFGFVC ++ DEA A+ +N + + L V+ K
Sbjct: 431 KSKGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRK 471
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/334 (27%), Positives = 141/334 (42%), Gaps = 66/334 (19%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+ N+ + + + + L FS+ GEV SCK+ D+ S G+GFV++ DA+ AI
Sbjct: 137 SGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDEN-GNSRGFGFVHFKEESDAKDAI 195
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKR--------ANLYVSGLPKHMTQEDLENLFRPYG 137
+NG+ + + V+ P + I + N+YV + T E+ E LF YG
Sbjct: 196 EAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYG 255
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGA 197
I+++ + D G P KG GFV F H A A++ELNG E
Sbjct: 256 EIVSAALEKD----------AEGKP------KGFGFVNFVDHNAAAKAVEELNGK--EFK 297
Query: 198 SEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLL 257
S+ + V A RA+ L Q R L A+F+
Sbjct: 298 SQALYVGRAQKKYERAE----ELKKQYEQYR------------LEKLAKFQ--------- 332
Query: 258 NNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGF 317
G +F+ NL +D L + F P+G + + +V+RD Q KGFGF
Sbjct: 333 -------------GVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRD-QEGNSKGFGF 378
Query: 318 VCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
VC ++ +EA A+ N + + L V+ K
Sbjct: 379 VCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRK 412
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 99/215 (46%), Gaps = 37/215 (17%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + T EE + LFS GE+ S L +D + G+GFVN+ A +A+
Sbjct: 231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKD-AEGKPKGFGFVNFVDHNAAAKAVE 289
Query: 87 ELNGLKLQNKSIKVSYARPS---SEAIKR---------------ANLYVSGLPKHMTQED 128
ELNG + +++++ V A+ +E +K+ NL++ L + E
Sbjct: 290 ELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEK 349
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L+ F PYGTI ++R++ D+ + SKG GFV F+ EA AM E
Sbjct: 350 LKEEFAPYGTITSARVMRDQEGN----------------SKGFGFVCFSSPEEATKAMTE 393
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQ 223
N I G +P+ V A R LA + A+
Sbjct: 394 KNQQIVAG--KPLYVAIAQRKDVRRSQLAQQIQAR 426
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 86/177 (48%), Gaps = 18/177 (10%)
Query: 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA 81
V N++L V + +T+ L +FS +G + S ++ RD T SLGY +VNY E
Sbjct: 45 VENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAG 104
Query: 82 ERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
++AI ELN ++ + ++ ++ P+ N+++ L + + L F +G +
Sbjct: 105 KKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEV 164
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
++ ++ D+ + S+G GFV F + +A+ A++ +NG + G
Sbjct: 165 LSCKVALDENGN----------------SRGFGFVHFKEESDAKDAIEAVNGMLMNG 205
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
++V L P + +L+ +F P G + +++V RD T G+ +V T+Y+ AIQ
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 333 LNGYALGDRLLQVSFKTHKP 352
LN + R ++ + P
Sbjct: 111 LNYAEINGRPCRIMWSERDP 130
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVF 328
GSG IF+ NL P ++ L + F FG V + KV D + +GFGFV +A
Sbjct: 136 GSG-NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKD 193
Query: 329 AIQSLNGYALGDRLLQVSFKTHKP 352
AI+++NG + L+V H P
Sbjct: 194 AIEAVNGMLMNG--LEVYVAMHVP 215
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 136/321 (42%), Gaps = 70/321 (21%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
+CD+ SKG FV F A+ A++++NG +
Sbjct: 131 VCDENG-----------------SKGYAFVHFETQEAADKAIEKMNGML----------- 162
Query: 205 FANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264
K ++ A + F N
Sbjct: 163 -----LNDRKVFVGRFKSRKEREAELGAKAKEFTN------------------------- 192
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+++ N E +D L +LF FG +VKV+RDP K KGFGFV ++
Sbjct: 193 ---------VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFVSYEKHE 242
Query: 325 EAVFAIQSLNGYALGDRLLQV 345
+A A++ +NG + +++ V
Sbjct: 243 DANKAVEEMNGKEISGKIIFV 263
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 152/332 (45%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ +++ D SKG GFV + +H +A A++E+NG E + +
Sbjct: 218 LSVKVMRDPNGK----------------SKGFGFVSYEKHEDANKAVEEMNGK--EISGK 259
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
I V GRA+ + QA R KF L + ++
Sbjct: 260 IIFV-------GRAQK---KVERQAELKR-------------------KFEQLKQERISR 290
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
G +++ NL +D L + F PFG++ + KV+ + + KGFGFVC
Sbjct: 291 Y---------QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVC 339
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
++ +EA A+ +NG +G + L V+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVGSKPLYVALAQRK 371
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 103/224 (45%), Gaps = 38/224 (16%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD +S G+GFV+Y + EDA +A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVE 249
Query: 87 ELNGLKLQNKSIKVSYARPSSE---AIKR---------------ANLYVSGLPKHMTQED 128
E+NG ++ K I V A+ E +KR NLY+ L + E
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEK 309
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L F P+G+I +++++ E+ R SKG GFV F+ EA A+ E
Sbjct: 310 LRKEFSPFGSITSAKVML-----EDGR------------SKGFGFVCFSSPEEATKAVTE 352
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAA 232
+NG I S+P+ V A R L + A MR A
Sbjct: 353 MNGRIV--GSKPLYVALAQRKEERKAHLTNQYMQRVAGMRALPA 394
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 143/332 (43%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ S GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIDK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A + A + N+Y+ + M E L+ F YG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ +++ D S+G GFV F +H +A+ A+ ++NG G +
Sbjct: 218 LSVKVMTDDHGK----------------SRGFGFVSFERHEDAQKAVDDMNGKDLNGKA- 260
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
I V A R L + KF + D +
Sbjct: 261 -IFVGRAQKKVERQTEL-----------------------------KRKFEQMKQDRITR 290
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
G ++V NL +D L + F PFG++ + KV+ + + KGFGFVC
Sbjct: 291 Y---------QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVC 339
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
++ +EA A+ +NG + + L V+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 70/321 (21%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
+CD+ SKG GFV F AE A+ ++NG +
Sbjct: 131 VCDENG-----------------SKGYGFVHFETQEAAERAIDKMNGML----------- 162
Query: 205 FANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264
K ++ A + F N
Sbjct: 163 -----LNDRKVFVGRFKSRKEREAELGARAKEFTN------------------------- 192
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+++ N + +D L + FG +GA +VKV+ D K +GFGFV ++
Sbjct: 193 ---------VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHG-KSRGFGFVSFERHE 242
Query: 325 EAVFAIQSLNGYALGDRLLQV 345
+A A+ +NG L + + V
Sbjct: 243 DAQKAVDDMNGKDLNGKAIFV 263
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 100/220 (45%), Gaps = 38/220 (17%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ F G S K++ D +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSE---AIKR---------------ANLYVSGLPKHMTQED 128
++NG L K+I V A+ E +KR NLYV L + E
Sbjct: 250 DMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDER 309
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L F P+G+I +++++ E R SKG GFV F+ EA A+ E
Sbjct: 310 LRKEFTPFGSITSAKVMM-----EGGR------------SKGFGFVCFSSPEEATKAVTE 352
Query: 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
+NG I A++P+ V A R L + A++R
Sbjct: 353 MNGRI--VATKPLYVALAQRKEERQAHLTNQYMQRMASVR 390
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/311 (25%), Positives = 138/311 (44%), Gaps = 68/311 (21%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+++L V + ++T+ L LFS +G V S ++ RD T +SLGY +VNY T D E+A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
ELN ++ + ++ +++ P+ + N+++ L + + L + F +G I++ +
Sbjct: 120 EELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCK 179
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITV 203
+ D+ + SKG GFV + A A++ +NG +
Sbjct: 180 VAQDENGN----------------SKGYGFVHYETDEAASQAIKHVNGML---------- 213
Query: 204 KFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLP 263
LN + + H H S KF + A+ N
Sbjct: 214 ----------------LNEKKVYVGH------HIPKKDRQS---KFDEMKANFTN----- 243
Query: 264 PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY 323
I+V N+ PE D+ LF +G V + + RD +T K +GFGFV T++
Sbjct: 244 ----------IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSH 293
Query: 324 DEAVFAIQSLN 334
++A A+Q LN
Sbjct: 294 EDASKAVQELN 304
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 85/379 (22%), Positives = 143/379 (37%), Gaps = 110/379 (29%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
N+ + + + + L F++ G + SCK+ +D+ S GYGFV+Y E A +AI
Sbjct: 149 GNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIK 207
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKR--------ANLYVSGLPKHMTQEDLENLFRPYGT 138
+NG+ L K + V + P + + N+YV + +T ++ LF YG
Sbjct: 208 HVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGD 267
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
+ +S + D+ + S+G GFV F H +A A+QELN G
Sbjct: 268 VTSSSLARDQETGK---------------SRGFGFVNFTSHEDASKAVQELNEKEFHG-- 310
Query: 199 EPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLN 258
N GRA+ + + +R A R +++++
Sbjct: 311 -------QNLYVGRAQ----KKHEREEELRKSYEAARQ-----EKASKYQ---------- 344
Query: 259 NSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD------------ 306
G +++ NL E +D L QLF FG + + KV+RD
Sbjct: 345 ------------GVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEPGEEGESK 392
Query: 307 ----------------------PQTYKCKG------------FGFVCMTNYDEAVFAIQS 332
P+ + + FGFVC N D+A A+
Sbjct: 393 EGEESEKNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFANPDDATKAVAE 452
Query: 333 LNGYALGDRLLQVSFKTHK 351
+N + ++ L V+ K
Sbjct: 453 MNQRMVNNKPLYVALAQRK 471
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 21/170 (12%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQT---MTQEELQHLFSSVGEVESCK 57
++ +++Y + QS +E +N YV +T +E + LF G+V S
Sbjct: 213 LLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSS 272
Query: 58 LIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA----------RPSS 107
L RD+ T +S G+GFVN+ EDA +A+ ELN + +++ V A R S
Sbjct: 273 LARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332
Query: 108 EAIKR--------ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKM 149
EA ++ NLY+ L + E L LF +G I +++++ D +
Sbjct: 333 EAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSI 382
Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
++V L P + +L++LF G+V +++V RD T + G+ +V + A++
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 333 LNGYALGDRLLQVSFKTHKP 352
LN + R ++ + P
Sbjct: 122 LNYTLIKGRPCRIMWSQRDP 141
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 142/333 (42%), Gaps = 66/333 (19%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
N+ + + Q++ + L F++ G++ SCK+ D+ +S G+ FV+Y E A+ AI
Sbjct: 134 GNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDEN-GKSRGFAFVHYSTGEAADAAIK 192
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKR--------ANLYVSGLPKHMTQEDLENLFRPYGT 138
+NG+ L +K + V + E + + N+Y+ + +T + E+L +P+G
Sbjct: 193 AVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGP 252
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
I+ + D+ +SKG GFV + H A A+ ELN
Sbjct: 253 TISVALSRDEKG----------------VSKGFGFVNYENHESARKAVDELNEK------ 290
Query: 199 EPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLN 258
V AGRA Q + R H L + A+
Sbjct: 291 ---EVNGKKLYAGRA---------QTKSEREAELKKSHEEKRLENEAK------------ 326
Query: 259 NSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFV 318
+G ++V NL E +D+ L F FG + + KV+RD + +GFGFV
Sbjct: 327 ----------SAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFV 375
Query: 319 CMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
C ++ DEA A+ +NG +G + L V+ K
Sbjct: 376 CYSSPDEATKAVSEMNGKMIGTKPLYVALAQRK 408
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 133/314 (42%), Gaps = 69/314 (21%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
N +++L V + ++T+ L +F+ +G V S ++ RD T +SLGY +VNY D E
Sbjct: 42 NTVSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGE 101
Query: 83 RAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
RA+ LN ++ +S ++ +++ P+ + N+++ L + + + L + F +G I+
Sbjct: 102 RALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL 161
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
+ ++ D EN + S+G FV ++ A+ A++ +NG +
Sbjct: 162 SCKVGTD----ENGK------------SRGFAFVHYSTGEAADAAIKAVNGML------- 198
Query: 201 ITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNS 260
LN + + H H G S K L A N
Sbjct: 199 -------------------LNDKKVYVGH------HVGKKERLS---KVEELRAQFTN-- 228
Query: 261 MLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCM 320
+++ N+ E D L PFG +V + RD + KGFGFV
Sbjct: 229 -------------VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGV-SKGFGFVNY 274
Query: 321 TNYDEAVFAIQSLN 334
N++ A A+ LN
Sbjct: 275 ENHESARKAVDELN 288
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 43/258 (16%)
Query: 8 YNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQS 67
++ + R + ++ Q +N+ + V +T E + L G S L RD+ S
Sbjct: 208 HHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGV-S 266
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE---AIKRA----------- 113
G+GFVNY E A +A+ ELN ++ K + A+ SE +K++
Sbjct: 267 KGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAK 326
Query: 114 ----NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISK 169
NLYV L + L F +GTI +S+++ D SG +S+
Sbjct: 327 SAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDD----------SG------VSR 370
Query: 170 GIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR- 228
G GFV ++ EA A+ E+NG + ++P+ V A R +AL + + AQ A R
Sbjct: 371 GFGFVCYSSPDEATKAVSEMNGKMI--GTKPLYVALAQRKDVRRQALESQI-AQRAQQRM 427
Query: 229 ----HFAAAMRHFGNPLH 242
F + G P++
Sbjct: 428 QYGAGFPGMQGYMGQPMY 445
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 105 bits (262), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 142/333 (42%), Gaps = 66/333 (19%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
N+ + + Q++ + L F++ G++ SCK+ D+ +S G+ FV+Y E A+ AI
Sbjct: 134 GNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDEN-GKSRGFAFVHYSTGEAADAAIK 192
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKR--------ANLYVSGLPKHMTQEDLENLFRPYGT 138
+NG+ L +K + V + E + + N+Y+ + +T + E+L +P+G
Sbjct: 193 AVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGP 252
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
I+ + D+ +SKG GFV + H A A+ ELN
Sbjct: 253 TISVALSRDEKG----------------VSKGFGFVNYENHESARKAVDELNEK------ 290
Query: 199 EPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLN 258
V AGRA Q + R H L + A+
Sbjct: 291 ---EVNGKKLYAGRA---------QTKSEREAELKKSHEEKRLENEAK------------ 326
Query: 259 NSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFV 318
+G ++V NL E +D+ L F FG + + KV+RD + +GFGFV
Sbjct: 327 ----------SAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRD-DSGVSRGFGFV 375
Query: 319 CMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
C ++ DEA A+ +NG +G + L V+ K
Sbjct: 376 CYSSPDEATKAVSEMNGKMIGTKPLYVALAQRK 408
Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 133/314 (42%), Gaps = 69/314 (21%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
N +++L V + ++T+ L +F+ +G V S ++ RD T +SLGY +VNY D E
Sbjct: 42 NTVSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGE 101
Query: 83 RAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
RA+ LN ++ +S ++ +++ P+ + N+++ L + + + L + F +G I+
Sbjct: 102 RALEHLNYSLIKGQSCRIMWSQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDIL 161
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
+ ++ D EN + S+G FV ++ A+ A++ +NG +
Sbjct: 162 SCKVGTD----ENGK------------SRGFAFVHYSTGEAADAAIKAVNGML------- 198
Query: 201 ITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNS 260
LN + + H H G S K L A N
Sbjct: 199 -------------------LNDKKVYVGH------HVGKKERLS---KVEELRAQFTN-- 228
Query: 261 MLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCM 320
+++ N+ E D L PFG +V + RD + KGFGFV
Sbjct: 229 -------------VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGV-SKGFGFVNY 274
Query: 321 TNYDEAVFAIQSLN 334
N++ A A+ LN
Sbjct: 275 ENHESARKAVDELN 288
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 43/258 (16%)
Query: 8 YNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQS 67
++ + R + ++ Q +N+ + V +T E + L G S L RD+ S
Sbjct: 208 HHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGV-S 266
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE---AIKRA----------- 113
G+GFVNY E A +A+ ELN ++ K + A+ SE +K++
Sbjct: 267 KGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAK 326
Query: 114 ----NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISK 169
NLYV L + L F +GTI +S+++ D SG +S+
Sbjct: 327 SAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDD----------SG------VSR 370
Query: 170 GIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR- 228
G GFV ++ EA A+ E+NG + ++P+ V A R +AL + + AQ A R
Sbjct: 371 GFGFVCYSSPDEATKAVSEMNGKMI--GTKPLYVALAQRKDVRRQALESQI-AQRAQQRM 427
Query: 229 ----HFAAAMRHFGNPLH 242
F + G P++
Sbjct: 428 QYGAGFPGMQGYMGQPMY 445
>sp|Q1ZXC2|PAP1B_DICDI Polyadenylate-binding protein 1-B OS=Dictyostelium discoideum
GN=pabpc1B PE=3 SV=1
Length = 814
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/363 (24%), Positives = 149/363 (41%), Gaps = 76/363 (20%)
Query: 43 LQHLFSSVGE--VESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100
L LFS VG + S + RD T +SLGY +VN++ DAERA+ LN + K ++
Sbjct: 200 LNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAERALDTLNYTLVHGKPCRI 259
Query: 101 --SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFV 158
SY P+ N++V L K + L + F +G I++ ++ +K
Sbjct: 260 MWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEK---------- 309
Query: 159 SGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG---------------------- 196
ISKG G+V F + AE A++++NGT+ G
Sbjct: 310 -------GISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVERYKVENKVF 362
Query: 197 ---ASEPITVK-----------------FANSPAGRAKALAA-----NLNAQAAAMRHFA 231
A E IT++ N G++K L +AQ A
Sbjct: 363 FRNADESITIEILQQELSNRFGEIESCILKNDANGKSKGLGLVEFKNQEDAQKILTESGA 422
Query: 232 AAMRHFGNPLHHSA-----RFKFAPLTADLLNNSM--LPPKSLHGSGWCIFVYNLAPETE 284
+ S+ P+T D + + + + +F+ N+ +
Sbjct: 423 LIISTIDGTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESID 482
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+++ + F G + +K+V+D + + KGFGF+ + EA A+ SLNG+ G + +Q
Sbjct: 483 RDLIKEEFAKHGTIIGIKIVQD-ENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQ 541
Query: 345 VSF 347
VSF
Sbjct: 542 VSF 544
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 89/195 (45%), Gaps = 47/195 (24%)
Query: 38 MTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI------------ 85
+ Q+EL + F GE+ESC ++++ +S G G V + EDA++ +
Sbjct: 374 ILQQELSNRF---GEIESC-ILKNDANGKSKGLGLVEFKNQEDAQKILTESGALIISTID 429
Query: 86 -----------IELNGLKLQNKSIKVSYARPSSEAIKRANL--YVSGLPKHMTQEDLENL 132
IE+NG + IK R + K +L +++ + + + ++ ++
Sbjct: 430 GTTTVSSNGGTIEINGKPITIDRIKSKVERFTEYRKKTTDLSLFINNIDESIDRDLIKEE 489
Query: 133 FRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192
F +GTII +I+ D EN R+ KG GF+ F++ EA+ A+ LNG
Sbjct: 490 FAKHGTIIGIKIVQD----ENARN------------KGFGFISFSEIQEAQKALDSLNGF 533
Query: 193 IPEGASEPITVKFAN 207
S+ I V F+N
Sbjct: 534 T--FGSKQIQVSFSN 546
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L +N + +++ ++ ++ F+ G + K+++D+ A++ G+GF+++ ++A++A+ L
Sbjct: 472 LFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDEN-ARNKGFGFISFSEIQEAQKALDSL 530
Query: 89 NGLKLQNKSIKVSYARPSSEAI 110
NG +K I+VS++ + I
Sbjct: 531 NGFTFGSKQIQVSFSNKDNNQI 552
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 139/333 (41%), Gaps = 67/333 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + + + + + FS+ G + SCK+ D+ S GYGFV++ E A +I +
Sbjct: 91 NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDK 149
Query: 88 LNGLKLQNKSIKVSYARPSSEAIKR--------ANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L K + V P E K N+YV + E L+ F PYG I
Sbjct: 150 VNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKI 209
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGAS 198
+ ++ M+ E+ + SKG GFV F AE A+Q LNG + EG S
Sbjct: 210 TSYKV----MSKEDGK------------SKGFGFVAFETTEAAEAAVQALNGKDMGEGKS 253
Query: 199 EPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLN 258
+ V A A R + L R F + H + F
Sbjct: 254 --LYVARAQKKAERQQELK----------RKFEELKQK-----RHESVF----------- 285
Query: 259 NSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFV 318
G ++V NL +D+ L F P+G + + KV+ D + + KGFGFV
Sbjct: 286 ------------GVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEG-RSKGFGFV 332
Query: 319 CMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
C EA A+ LNG +G + L V+ K
Sbjct: 333 CFNAASEATCAVTELNGRVVGSKPLYVALAQRK 365
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/316 (24%), Positives = 136/316 (43%), Gaps = 69/316 (21%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V +PQ + + L FSS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 2 ASLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD 61
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++NK I++ +++ PS N+++ L + + + + + F +G I++ ++
Sbjct: 62 TMNFDLVRNKPIRIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKV 121
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
D+ + SKG GFV F A ++ ++NG +
Sbjct: 122 ATDEKGN----------------SKGYGFVHFETEEAANTSIDKVNGML----------- 154
Query: 205 FANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264
LN + + G + R K A L N
Sbjct: 155 ---------------LNGKKV----------YVGKFIPRKEREKELGEKAKLFTN----- 184
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
++V N + +D L + F P+G + + KV+ + K KGFGFV +
Sbjct: 185 ---------VYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTE 234
Query: 325 EAVFAIQSLNGYALGD 340
A A+Q+LNG +G+
Sbjct: 235 AAEAAVQALNGKDMGE 250
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 38/221 (17%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + E+L+ F G++ S K++ K +S G+GFV + TE AE A+
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQ 241
Query: 87 ELNGLKL-QNKSIKVSYARPSSE---AIKR---------------ANLYVSGLPKHMTQE 127
LNG + + KS+ V+ A+ +E +KR NLYV L + +
Sbjct: 242 ALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDD 301
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
L F PYG I +++++ D+ SKG GFV FN EA A+
Sbjct: 302 RLRIAFSPYGNITSAKVMTDEEGR----------------SKGFGFVCFNAASEATCAVT 345
Query: 188 ELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
ELNG + S+P+ V A R LA+ MR
Sbjct: 346 ELNGRVV--GSKPLYVALAQRKEERKAHLASQYMRHMTGMR 384
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 138/311 (44%), Gaps = 69/311 (22%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+++L V + ++T+ L LFSS+G+V S ++ RD T +SLGY +VNY T ERA+
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
ELN ++ K ++ +++ P+ + N+++ L + + L + F +G I++ +
Sbjct: 101 DELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCK 160
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITV 203
+ D+ +SKG GFV + A +A++ +NG +
Sbjct: 161 VAQDEFG----------------VSKGYGFVHYETAEAANNAIKHVNGML---------- 194
Query: 204 KFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLP 263
LN + + H H S KF + A+ N
Sbjct: 195 ----------------LNDKKVFVGH------HISKKDRQS---KFEEMKANFTN----- 224
Query: 264 PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY 323
I++ N+ PE ED +LF FG + + + RD + K +GFGFV + +
Sbjct: 225 ----------IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEG-KSRGFGFVNFSTH 273
Query: 324 DEAVFAIQSLN 334
+ A A++ +N
Sbjct: 274 ESAQAAVEEMN 284
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 87/383 (22%), Positives = 150/383 (39%), Gaps = 115/383 (30%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
N+ + + + + L F++ G + SCK+ +D+ S GYGFV+Y E A AI
Sbjct: 130 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGV-SKGYGFVHYETAEAANNAIK 188
Query: 87 ELNGLKLQNKSIKVSY-----ARPSS-EAIKR--ANLYVSGLPKHMTQEDLENLFRPYGT 138
+NG+ L +K + V + R S E +K N+Y+ + + E+ LF +G
Sbjct: 189 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE 248
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
I ++ + D S+G GFV F+ H A+ A++E+N E S
Sbjct: 249 ITSATLSRDSEGK----------------SRGFGFVNFSTHESAQAAVEEMNDK--EVRS 290
Query: 199 EPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLN 258
+ + V A R + L + + AA + +++++
Sbjct: 291 QKLYVGRAQKKHEREEEL----------RKQYEAAR------MEKASKYQ---------- 324
Query: 259 NSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD--------PQTY 310
G ++V NL + +D+ L +LFGP+G + + KV+RD P++
Sbjct: 325 ------------GVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESE 372
Query: 311 ------------------------------------------KCKGFGFVCMTNYDEAVF 328
K KGFGFVC ++ DEA
Sbjct: 373 TKESANKENEKAAEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKSKGFGFVCFSSPDEASK 432
Query: 329 AIQSLNGYALGDRLLQVSFKTHK 351
A+ +N + + L V+ K
Sbjct: 433 AVTEMNQRMVNGKPLYVALAQRK 455
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 105/250 (42%), Gaps = 56/250 (22%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + EE + LF GE+ S L RD + +S G+GFVN+ E A+ A+
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKSRGFGFVNFSTHESAQAAVE 281
Query: 87 ELNGLKLQNKSIKVSYA----------RPSSEAIKR--------ANLYVSGLPKHMTQED 128
E+N +++++ + V A R EA + NLYV L + +
Sbjct: 282 EMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDK 341
Query: 129 LENLFRPYGTIITSRILCD----KMASENVRSFVSGTPEIPQI----------------- 167
L LF PYGTI +++++ D + A+ + S E +
Sbjct: 342 LRELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEK 401
Query: 168 --------------SKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRA 213
SKG GFV F+ EA A+ E+N + G +P+ V A R
Sbjct: 402 KEAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNG--KPLYVALAQRKDVRR 459
Query: 214 KALAANLNAQ 223
L A++ A+
Sbjct: 460 SQLEASIQAR 469
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/332 (27%), Positives = 149/332 (44%), Gaps = 66/332 (19%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FSS G + SCK+ D +S GYGFV + + E A+ AI +
Sbjct: 147 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 205
Query: 88 LNGLKLQNKSIKVSY-------ARPSSEAIKR-ANLYVSGLPKHMTQEDLENLFRPYGTI 139
LNG+ L +K + V + AR S A+ N+YV LPK +T ++L+ F YG I
Sbjct: 206 LNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI 265
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ ++ D+ S N RSF GFV F A A++++NG +
Sbjct: 266 SSAVVMKDQ--SGNSRSF--------------GFVNFVSPEAAAVAVEKMNGI--SLGED 307
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
+ V A + R + L R F +RF
Sbjct: 308 VLYVGRAQKKSDREEEL----------RRKFEQ---------ERISRF------------ 336
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
+ L GS +++ NL D L ++F +G V + KV+ + Q +GFGFV
Sbjct: 337 -----EKLQGSN--LYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGL-SRGFGFVA 388
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
+N +EA+ A++ +NG +G + L V+ K
Sbjct: 389 YSNPEEALLAMKEMNGKMIGRKPLYVALAQRK 420
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 19/170 (11%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
NS+L V + ++ + L LF+ V V + ++ RD T +SLGY +VN+ EDA RA+
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAM 116
Query: 86 IELNGLKLQNKSIKV--SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
LN ++++ I++ S PS+ + N+++ L + + L F +GTI++ +
Sbjct: 117 ESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCK 176
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+ D + SKG GFV+F + A+ A+ +LNG +
Sbjct: 177 VAMDVVGR----------------SKGYGFVQFEKEETAQAAIDKLNGML 210
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 35/185 (18%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V +P+ +T +EL+ F G++ S +++D++ S +GFVN+ E A A+
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS-GNSRSFGFVNFVSPEAAAVAVE 297
Query: 87 ELNGLKLQNKSIKVSYARPSS------------------EAIKRANLYVSGLPKHMTQED 128
++NG+ L + V A+ S E ++ +NLY+ L + E
Sbjct: 298 KMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEK 357
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L+ +F YG + + +++ + +S+G GFV ++ EA AM+E
Sbjct: 358 LKEMFSEYGNVTSCKVMMNSQG----------------LSRGFGFVAYSNPEEALLAMKE 401
Query: 189 LNGTI 193
+NG +
Sbjct: 402 MNGKM 406
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q SNL + + ++ E+L+ +FS G V SCK++ + + S G+GFV Y E+A A
Sbjct: 340 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEALLA 398
Query: 85 IIELNGLKLQNKSIKVSYARPSSE 108
+ E+NG + K + V+ A+ E
Sbjct: 399 MKEMNGKMIGRKPLYVALAQRKEE 422
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 263 PPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTN 322
P L G G +F+ NL ++ L++ F FG + + KV D + KG+GFV
Sbjct: 138 PSTRLSGKG-NVFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEK 195
Query: 323 YDEAVFAIQSLNGYALGDR 341
+ A AI LNG L D+
Sbjct: 196 EETAQAAIDKLNGMLLNDK 214
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/311 (24%), Positives = 139/311 (44%), Gaps = 69/311 (22%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+++L V + ++T+ L LFSS+G+V S ++ RD T +SLGY +VNY T D ERA+
Sbjct: 53 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERAL 112
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
+LN ++ K ++ +++ P+ + N+++ L + + L + F +G I++ +
Sbjct: 113 EDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCK 172
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITV 203
+ D+ + SKG GFV + A +A++ +NG +
Sbjct: 173 VAQDEFGN----------------SKGYGFVHYETAEAANNAIKHVNGML---------- 206
Query: 204 KFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLP 263
LN + + H H S KF + A+ N
Sbjct: 207 ----------------LNDKKVFVGH------HISKKDRQS---KFEEMKANFTN----- 236
Query: 264 PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY 323
+++ NL E +D+ ++F FG + + + RD Q K +GFGFV + +
Sbjct: 237 ----------VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRD-QEGKSRGFGFVNFSTH 285
Query: 324 DEAVFAIQSLN 334
+ A A++ +N
Sbjct: 286 ESAQAAVEEMN 296
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 124/288 (43%), Gaps = 65/288 (22%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
N+ + + + + L F++ G + SCK+ +D+ S GYGFV+Y E A AI
Sbjct: 142 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIK 200
Query: 87 ELNGLKLQNKSIKVSY-----ARPSS-EAIKR--ANLYVSGLPKHMTQEDLENLFRPYGT 138
+NG+ L +K + V + R S E +K N+Y+ L + ++ +F +G
Sbjct: 201 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGE 260
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
I ++ + D+ S+G GFV F+ H A+ A++E+N E S
Sbjct: 261 ITSATLSRDQEGK----------------SRGFGFVNFSTHESAQAAVEEMNDK--EIRS 302
Query: 199 EPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLN 258
+ + V A R + L + + AA L +++++
Sbjct: 303 QKLYVGRAQKKHEREEEL----------RKQYEAAR------LEKASKYQ---------- 336
Query: 259 NSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
G ++V NL + +D L +LFGP+G + + KV+RD
Sbjct: 337 ------------GVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 107/256 (41%), Gaps = 62/256 (24%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + +E + +F GE+ S L RD+ +S G+GFVN+ E A+ A+
Sbjct: 235 TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVE 293
Query: 87 ELNGLKLQNKSIKVSYARPSSEA------------IKRA------NLYVSGLPKHMTQED 128
E+N +++++ + V A+ E +++A NLYV L + E
Sbjct: 294 EMNDKEIRSQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEK 353
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSG-------------TPEIPQI-------- 167
L LF PYGTI +++++ D + +G TPE +
Sbjct: 354 LRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKENDKEATPEAEKAEKAEEKPS 413
Query: 168 --------------------SKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
SKG GFV F+ EA A+ E+N + G +P+ V A
Sbjct: 414 ESSEEKDKEAKKSDKKPFGKSKGFGFVCFSSPDEASKAVTEMNQRMVNG--KPLYVALAQ 471
Query: 208 SPAGRAKALAANLNAQ 223
R L A++ A+
Sbjct: 472 RKDVRRSQLEASIQAR 487
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L F FG + + KV +D + KG+GFV + A AI+ +
Sbjct: 144 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 334 NGYALGDRLLQVSFKTHK 351
NG L D+ + V K
Sbjct: 203 NGMLLNDKKVFVGHHISK 220
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 311 KCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K KGFGFVC ++ DEA A+ +N + + L V+ K
Sbjct: 433 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 473
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 86/332 (25%), Positives = 144/332 (43%), Gaps = 68/332 (20%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V + +++ + L S+ G + SC ++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKK 157
Query: 88 LNGLKL--------QNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L Q KS K A + A + N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG G
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNGKELNGKQ- 260
Query: 200 PITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259
I V A R L + F + D +
Sbjct: 261 -IYVGRAQKKVERQTEL-----------------------------KRTFEQMKQDRITR 290
Query: 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
+ ++V NL +D L + F PFG + + KV+ + + KGFGFVC
Sbjct: 291 YQV---------VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVC 339
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
++ +EA A+ +NG + + L V+ K
Sbjct: 340 FSSPEEATKAVTEMNGRIVATKPLYVALAQRK 371
Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 133/321 (41%), Gaps = 70/321 (21%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T+ S Y +VN+ T+DAE A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N++V L K + + L + +G I++ +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
+CD+ SKG GFV F H AE A++++NG + G
Sbjct: 131 VCDENG-----------------SKGYGFVHFETHEAAERAIKKMNGMLLNG-------- 165
Query: 205 FANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264
K ++ A + F N
Sbjct: 166 --------RKVFVGQFKSRKEREAELGARAKEFPN------------------------- 192
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV ++
Sbjct: 193 ---------VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHE 242
Query: 325 EAVFAIQSLNGYALGDRLLQV 345
+A A+ +NG L + + V
Sbjct: 243 DAQKAVDEMNGKELNGKQIYV 263
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 38/219 (17%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+ E
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 88 LNGLKLQNKSIKVSYARPSSE---AIKRA---------------NLYVSGLPKHMTQEDL 129
+NG +L K I V A+ E +KR NLYV L + E L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERL 310
Query: 130 ENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189
F P+GTI +++++ E R SKG GFV F+ EA A+ E+
Sbjct: 311 RKAFSPFGTITSAKVMM-----EGGR------------SKGFGFVCFSSPEEATKAVTEM 353
Query: 190 NGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
NG I A++P+ V A R L + A++R
Sbjct: 354 NGRI--VATKPLYVALAQRKEERQAYLTNEYMQRMASVR 390
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/338 (23%), Positives = 144/338 (42%), Gaps = 69/338 (20%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
ST S +++L V + ++T+ L LFSS+G+V S ++ RD T +SLGY +VNY
Sbjct: 41 STTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 100
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLF 133
T D ERA+ +LN ++ K ++ +++ P+ + N+++ L + + L + F
Sbjct: 101 NNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 134 RPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+G I++ ++ D+ + SKG GFV + A +A++ +NG +
Sbjct: 161 AAFGNILSCKVAQDEFGN----------------SKGYGFVHYETAEAANNAIKHVNGML 204
Query: 194 PEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLT 253
LN + + H H S KF +
Sbjct: 205 --------------------------LNDKKVFVGH------HISKKDRQS---KFEEMK 229
Query: 254 ADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCK 313
A+ N +++ N+ E D ++F FG + + + RD Q K +
Sbjct: 230 ANFTN---------------VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRD-QEGKSR 273
Query: 314 GFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
GFGFV + +D A A+ +N + + L V K
Sbjct: 274 GFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKK 311
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 87/379 (22%), Positives = 147/379 (38%), Gaps = 111/379 (29%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
N+ + + + + L F++ G + SCK+ +D+ S GYGFV+Y E A AI
Sbjct: 140 GNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEF-GNSKGYGFVHYETAEAANNAIK 198
Query: 87 ELNGLKLQNKSIKVSY-----ARPSS-EAIKR--ANLYVSGLPKHMTQEDLENLFRPYGT 138
+NG+ L +K + V + R S E +K N+Y+ + + +T E+ +F +G
Sbjct: 199 HVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGE 258
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
I ++ + D+ S+G GFV F+ H A+ A+ E+N
Sbjct: 259 ITSATLSRDQEGK----------------SRGFGFVNFSTHDSAQAAVDEMNDK------ 296
Query: 199 EPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLN 258
+K GRA+ + + +R A R L +++++
Sbjct: 297 ---EIKGQKLYVGRAQ----KKHEREEELRKQYEAAR-----LEKASKYQ---------- 334
Query: 259 NSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTY-------- 310
G ++V NL + +D L +LF PFG + + KV+RD T
Sbjct: 335 ------------GVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEK 382
Query: 311 --------------------------------------KCKGFGFVCMTNYDEAVFAIQS 332
K KGFGFVC ++ DEA A+
Sbjct: 383 EKEKESNKENEKEGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTE 442
Query: 333 LNGYALGDRLLQVSFKTHK 351
+N + + L V+ K
Sbjct: 443 MNQRMVNGKPLYVALAQRK 461
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 105/246 (42%), Gaps = 52/246 (21%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + Q +T EE + +F GE+ S L RD+ +S G+GFVN+ + A+ A+
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVD 291
Query: 87 ELNGLKLQNKSIKVSYARPSSEA------------IKRA------NLYVSGLPKHMTQED 128
E+N +++ + + V A+ E +++A NLYV L + E
Sbjct: 292 EMNDKEIKGQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 351
Query: 129 LENLFRPYGTIITSRILCDKMASENV-------------------------------RSF 157
L LF P+GTI +++++ D + +
Sbjct: 352 LRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEP 411
Query: 158 VSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALA 217
+I SKG GFV F+ EA A+ E+N + G +P+ V A R L
Sbjct: 412 KKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNG--KPLYVALAQRKDVRRSQLE 469
Query: 218 ANLNAQ 223
A++ A+
Sbjct: 470 ASIQAR 475
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,187,024
Number of Sequences: 539616
Number of extensions: 5350105
Number of successful extensions: 18467
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 272
Number of HSP's that attempted gapping in prelim test: 13978
Number of HSP's gapped (non-prelim): 3338
length of query: 356
length of database: 191,569,459
effective HSP length: 118
effective length of query: 238
effective length of database: 127,894,771
effective search space: 30438955498
effective search space used: 30438955498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)