Query psy9313
Match_columns 356
No_of_seqs 180 out of 1939
Neff 10.5
Searched_HMMs 46136
Date Sat Aug 17 00:11:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0145|consensus 100.0 8E-53 1.7E-57 333.8 28.4 309 21-352 36-359 (360)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.5E-52 7.6E-57 375.3 35.1 313 25-352 2-350 (352)
3 KOG0117|consensus 100.0 2E-45 4.3E-50 312.7 25.3 271 3-352 60-332 (506)
4 TIGR01648 hnRNP-R-Q heterogene 100.0 3.9E-43 8.4E-48 322.7 29.0 267 4-352 36-308 (578)
5 TIGR01628 PABP-1234 polyadenyl 100.0 4.5E-43 9.8E-48 333.6 29.1 256 27-352 1-262 (562)
6 TIGR01628 PABP-1234 polyadenyl 100.0 1.5E-42 3.3E-47 330.0 31.1 269 25-351 87-364 (562)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.1E-41 2.4E-46 316.0 30.1 297 25-351 1-351 (481)
8 KOG0144|consensus 100.0 8.4E-42 1.8E-46 289.3 21.9 317 21-353 29-506 (510)
9 TIGR01622 SF-CC1 splicing fact 100.0 1.7E-40 3.8E-45 309.1 32.3 307 22-350 85-447 (457)
10 KOG0127|consensus 100.0 1.9E-40 4.2E-45 288.7 25.6 308 26-351 5-378 (678)
11 TIGR01645 half-pint poly-U bin 100.0 9.5E-38 2.1E-42 287.4 33.5 170 23-209 104-284 (612)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.5E-38 2.1E-42 289.8 32.9 280 25-351 95-480 (481)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.5E-38 3.3E-43 300.2 26.6 279 19-349 168-500 (509)
14 KOG0148|consensus 100.0 1.4E-36 3.1E-41 242.8 18.3 232 23-352 3-239 (321)
15 KOG0123|consensus 100.0 6.2E-34 1.3E-38 251.0 23.6 244 27-350 2-245 (369)
16 TIGR01659 sex-lethal sex-letha 100.0 9.4E-34 2E-38 248.8 22.1 175 21-210 102-276 (346)
17 KOG0123|consensus 100.0 1E-31 2.2E-36 237.0 21.2 264 29-352 79-350 (369)
18 TIGR01659 sex-lethal sex-letha 100.0 3.4E-31 7.3E-36 232.7 19.8 171 109-352 104-276 (346)
19 KOG0124|consensus 100.0 1.6E-30 3.5E-35 216.5 22.2 165 26-207 113-288 (544)
20 TIGR01645 half-pint poly-U bin 100.0 1.4E-30 3.1E-35 240.1 20.2 181 111-353 106-286 (612)
21 KOG0110|consensus 100.0 6.1E-30 1.3E-34 230.4 17.5 264 22-352 381-694 (725)
22 KOG0147|consensus 100.0 2E-29 4.4E-34 221.2 15.6 305 20-349 173-526 (549)
23 KOG0148|consensus 100.0 7E-29 1.5E-33 198.8 15.3 164 26-212 62-241 (321)
24 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4E-28 8.6E-33 218.9 19.0 167 112-351 3-171 (352)
25 TIGR01622 SF-CC1 splicing fact 100.0 2.3E-27 5E-32 221.1 21.5 179 110-350 87-265 (457)
26 KOG0144|consensus 99.9 1.9E-27 4.1E-32 202.4 12.7 175 109-354 31-209 (510)
27 TIGR01648 hnRNP-R-Q heterogene 99.9 2E-26 4.3E-31 212.6 19.0 223 24-299 136-369 (578)
28 KOG0146|consensus 99.9 4.5E-27 9.8E-32 188.1 10.8 243 95-353 2-367 (371)
29 KOG0145|consensus 99.9 1.7E-26 3.6E-31 184.2 12.4 169 111-352 40-210 (360)
30 KOG0131|consensus 99.9 1.2E-26 2.7E-31 175.4 11.0 173 109-353 6-179 (203)
31 KOG4212|consensus 99.9 1.5E-24 3.2E-29 185.1 23.7 154 26-196 44-283 (608)
32 KOG0127|consensus 99.9 7.7E-26 1.7E-30 197.9 15.5 193 112-352 5-197 (678)
33 KOG1190|consensus 99.9 2.9E-25 6.3E-30 187.8 18.5 295 21-353 23-375 (492)
34 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.4E-25 7.4E-30 209.4 21.3 192 109-351 172-375 (509)
35 KOG0131|consensus 99.9 1.9E-25 4.1E-30 169.0 11.6 169 25-210 8-178 (203)
36 KOG0110|consensus 99.9 2E-24 4.4E-29 195.0 12.9 278 21-352 222-599 (725)
37 KOG0117|consensus 99.9 2.1E-23 4.6E-28 178.7 15.1 169 22-215 160-337 (506)
38 KOG1456|consensus 99.9 7.5E-22 1.6E-26 165.4 23.0 305 17-355 22-367 (494)
39 KOG1190|consensus 99.9 9.8E-22 2.1E-26 166.6 23.8 281 19-351 143-491 (492)
40 KOG4211|consensus 99.9 5.6E-22 1.2E-26 172.4 21.3 300 22-347 6-354 (510)
41 KOG0124|consensus 99.9 3E-23 6.6E-28 173.3 12.7 178 113-352 114-291 (544)
42 KOG0109|consensus 99.9 1.8E-23 3.9E-28 169.6 9.8 149 113-352 3-151 (346)
43 KOG0109|consensus 99.9 7.5E-23 1.6E-27 166.1 11.2 147 27-208 3-149 (346)
44 KOG0147|consensus 99.8 7.3E-21 1.6E-25 167.7 9.7 184 109-352 176-359 (549)
45 KOG4205|consensus 99.8 1.1E-20 2.4E-25 161.1 10.1 167 25-210 5-177 (311)
46 KOG0120|consensus 99.8 4.8E-20 1E-24 164.7 11.6 280 14-349 163-490 (500)
47 KOG0146|consensus 99.8 1.2E-19 2.6E-24 145.7 12.2 167 25-207 18-365 (371)
48 KOG1456|consensus 99.8 2E-17 4.4E-22 139.0 23.6 280 23-351 117-491 (494)
49 KOG4206|consensus 99.8 9.2E-19 2E-23 138.5 14.5 159 25-207 8-220 (221)
50 KOG0105|consensus 99.8 1.5E-18 3.2E-23 132.0 14.7 153 23-200 3-181 (241)
51 PLN03134 glycine-rich RNA-bind 99.8 6.2E-19 1.3E-23 135.9 12.9 86 269-354 32-117 (144)
52 KOG4206|consensus 99.8 1.1E-18 2.5E-23 138.0 14.4 205 112-349 9-220 (221)
53 KOG4205|consensus 99.8 2.2E-19 4.8E-24 153.2 11.0 174 111-353 5-178 (311)
54 PLN03134 glycine-rich RNA-bind 99.8 5.8E-18 1.3E-22 130.5 13.2 88 21-108 29-116 (144)
55 KOG1365|consensus 99.8 4.2E-18 9E-23 143.6 11.4 282 20-349 54-360 (508)
56 KOG0105|consensus 99.8 1.2E-16 2.6E-21 121.7 17.0 181 110-347 4-186 (241)
57 KOG1548|consensus 99.7 3.6E-16 7.8E-21 130.5 15.4 194 111-350 133-351 (382)
58 KOG0122|consensus 99.7 9.8E-17 2.1E-21 127.7 9.7 83 270-352 188-270 (270)
59 KOG4211|consensus 99.7 7.4E-16 1.6E-20 134.6 15.4 170 112-349 10-180 (510)
60 PF00076 RRM_1: RNA recognitio 99.7 3.7E-16 8E-21 106.1 9.8 70 29-99 1-70 (70)
61 KOG1457|consensus 99.7 5.4E-16 1.2E-20 121.7 10.5 212 110-339 32-274 (284)
62 PF00076 RRM_1: RNA recognitio 99.7 5E-16 1.1E-20 105.5 9.1 70 274-344 1-70 (70)
63 KOG1457|consensus 99.7 5.6E-15 1.2E-19 116.0 15.2 160 17-195 25-274 (284)
64 KOG4307|consensus 99.7 5.8E-15 1.3E-19 133.6 17.4 175 15-209 300-514 (944)
65 KOG0122|consensus 99.6 1.2E-15 2.6E-20 121.5 10.4 85 22-106 185-269 (270)
66 PLN03120 nucleic acid binding 99.6 2.6E-15 5.6E-20 123.7 10.7 80 271-354 4-83 (260)
67 PF14259 RRM_6: RNA recognitio 99.6 4.4E-15 9.6E-20 100.7 9.9 70 274-344 1-70 (70)
68 PF14259 RRM_6: RNA recognitio 99.6 4.2E-15 9.2E-20 100.8 9.8 70 29-99 1-70 (70)
69 KOG0121|consensus 99.6 1.3E-15 2.9E-20 108.9 7.0 80 270-349 35-114 (153)
70 KOG4207|consensus 99.6 5.4E-16 1.2E-20 120.3 5.4 82 270-351 12-93 (256)
71 KOG0125|consensus 99.6 4.3E-15 9.2E-20 123.3 8.9 79 270-350 95-173 (376)
72 KOG0130|consensus 99.6 4.7E-15 1E-19 107.0 8.0 92 262-353 63-154 (170)
73 KOG0114|consensus 99.6 1.4E-14 2.9E-19 99.7 9.4 80 268-350 15-94 (124)
74 KOG0121|consensus 99.6 4.4E-15 9.6E-20 106.2 7.1 84 22-105 32-115 (153)
75 KOG0126|consensus 99.6 4E-16 8.6E-21 118.5 1.4 83 271-353 35-117 (219)
76 KOG1548|consensus 99.6 2.3E-13 5E-18 114.0 17.2 168 19-208 127-351 (382)
77 KOG4212|consensus 99.6 1.4E-13 3E-18 118.5 16.2 220 111-349 43-292 (608)
78 KOG0113|consensus 99.6 1.6E-14 3.5E-19 118.4 10.1 85 266-350 96-180 (335)
79 KOG0107|consensus 99.6 9.7E-15 2.1E-19 110.5 7.9 77 25-106 9-85 (195)
80 KOG0106|consensus 99.6 5.1E-15 1.1E-19 118.7 6.2 164 113-345 2-165 (216)
81 KOG0149|consensus 99.6 9.9E-15 2.1E-19 116.0 7.7 79 271-350 12-90 (247)
82 PLN03120 nucleic acid binding 99.6 2.8E-14 6.1E-19 117.6 10.3 76 26-105 4-79 (260)
83 KOG0106|consensus 99.6 9.5E-15 2.1E-19 117.2 7.2 144 27-203 2-165 (216)
84 KOG0114|consensus 99.5 3.4E-14 7.4E-19 97.7 8.7 85 21-108 13-97 (124)
85 KOG0107|consensus 99.5 2.4E-14 5.1E-19 108.5 7.8 78 270-352 9-86 (195)
86 KOG4207|consensus 99.5 1.8E-14 3.8E-19 111.9 7.2 85 20-104 7-91 (256)
87 PLN03121 nucleic acid binding 99.5 7.9E-14 1.7E-18 113.0 10.4 79 270-352 4-82 (243)
88 COG0724 RNA-binding proteins ( 99.5 2.6E-13 5.6E-18 118.9 14.1 123 26-148 115-261 (306)
89 KOG0126|consensus 99.5 2E-15 4.4E-20 114.7 0.4 82 23-104 32-113 (219)
90 KOG0149|consensus 99.5 4.9E-14 1.1E-18 112.1 7.1 81 23-104 9-89 (247)
91 PLN03213 repressor of silencin 99.5 1.2E-13 2.5E-18 120.8 9.6 78 270-351 9-88 (759)
92 smart00362 RRM_2 RNA recogniti 99.5 1.8E-13 3.8E-18 93.1 8.5 72 273-346 1-72 (72)
93 PLN03213 repressor of silencin 99.5 1.4E-13 3E-18 120.3 9.7 80 23-106 7-88 (759)
94 smart00360 RRM RNA recognition 99.5 1.8E-13 3.8E-18 92.8 7.9 71 276-346 1-71 (71)
95 PLN03121 nucleic acid binding 99.5 2.8E-13 6.2E-18 109.8 10.2 77 24-104 3-79 (243)
96 smart00362 RRM_2 RNA recogniti 99.5 4.1E-13 8.9E-18 91.3 9.2 71 28-100 1-71 (72)
97 KOG0120|consensus 99.5 6.6E-13 1.4E-17 119.4 12.7 175 20-208 283-491 (500)
98 KOG0111|consensus 99.5 4.9E-14 1.1E-18 110.5 4.5 83 270-352 9-91 (298)
99 KOG0108|consensus 99.5 1.6E-13 3.4E-18 122.7 8.2 81 272-352 19-99 (435)
100 KOG0125|consensus 99.5 1.4E-13 3.1E-18 114.3 6.9 105 89-212 73-177 (376)
101 KOG4660|consensus 99.4 4E-13 8.6E-18 119.6 9.8 73 22-99 71-143 (549)
102 PF13893 RRM_5: RNA recognitio 99.4 6.7E-13 1.5E-17 85.4 8.0 56 288-348 1-56 (56)
103 KOG0111|consensus 99.4 1.1E-13 2.4E-18 108.5 4.7 88 22-109 6-93 (298)
104 KOG0113|consensus 99.4 1.1E-12 2.4E-17 107.7 10.4 82 23-104 98-179 (335)
105 smart00360 RRM RNA recognition 99.4 8.4E-13 1.8E-17 89.4 8.3 70 31-100 1-70 (71)
106 KOG0130|consensus 99.4 4.1E-13 9E-18 97.1 6.6 84 21-104 67-150 (170)
107 cd00590 RRM RRM (RNA recogniti 99.4 1.6E-12 3.5E-17 88.8 9.3 74 273-347 1-74 (74)
108 smart00361 RRM_1 RNA recogniti 99.4 8.5E-13 1.8E-17 88.9 7.6 61 285-345 2-69 (70)
109 cd00590 RRM RRM (RNA recogniti 99.4 5.2E-12 1.1E-16 86.2 10.0 74 28-102 1-74 (74)
110 KOG1365|consensus 99.4 8E-13 1.7E-17 112.0 6.5 162 25-206 160-359 (508)
111 COG0724 RNA-binding proteins ( 99.4 1.4E-11 3E-16 107.8 13.7 180 112-340 115-294 (306)
112 KOG0128|consensus 99.3 1.6E-13 3.4E-18 127.6 -0.4 236 22-349 567-813 (881)
113 KOG0108|consensus 99.3 3.8E-12 8.1E-17 114.0 8.3 79 27-105 19-97 (435)
114 KOG0415|consensus 99.3 2.9E-12 6.2E-17 107.6 6.9 89 262-350 230-318 (479)
115 PF13893 RRM_5: RNA recognitio 99.3 1.1E-11 2.3E-16 79.7 7.9 56 43-103 1-56 (56)
116 smart00361 RRM_1 RNA recogniti 99.3 2.5E-11 5.5E-16 81.7 8.3 61 40-100 2-69 (70)
117 KOG0129|consensus 99.2 3E-10 6.4E-15 100.7 14.9 172 110-332 257-432 (520)
118 KOG0112|consensus 99.2 8E-12 1.7E-16 117.0 4.9 171 21-215 367-537 (975)
119 KOG4307|consensus 99.2 5.4E-10 1.2E-14 102.0 15.2 200 115-351 314-514 (944)
120 KOG4454|consensus 99.2 1.4E-11 3.1E-16 96.8 3.7 149 21-196 4-152 (267)
121 KOG4208|consensus 99.2 9.8E-11 2.1E-15 91.7 8.0 86 21-106 44-130 (214)
122 KOG4208|consensus 99.2 1.2E-10 2.5E-15 91.2 7.9 80 271-350 49-129 (214)
123 PF04059 RRM_2: RNA recognitio 99.1 3.1E-10 6.7E-15 79.9 8.7 79 272-350 2-86 (97)
124 KOG0415|consensus 99.1 1.1E-10 2.3E-15 98.3 6.9 87 19-105 232-318 (479)
125 KOG0129|consensus 99.1 2.3E-09 5E-14 95.2 14.6 156 17-188 250-432 (520)
126 KOG0153|consensus 99.1 3.9E-10 8.4E-15 95.0 9.2 85 16-106 218-303 (377)
127 KOG0132|consensus 99.1 2.8E-10 6E-15 105.2 8.5 78 270-353 420-497 (894)
128 KOG4661|consensus 99.0 1.1E-09 2.4E-14 97.9 9.8 84 269-352 403-486 (940)
129 PF04059 RRM_2: RNA recognitio 99.0 2.1E-09 4.6E-14 75.7 9.3 79 26-104 1-85 (97)
130 KOG4454|consensus 99.0 9.2E-11 2E-15 92.3 2.2 142 108-338 5-150 (267)
131 KOG0132|consensus 99.0 8.8E-10 1.9E-14 102.0 7.5 77 23-105 418-494 (894)
132 KOG0128|consensus 99.0 2.4E-11 5.2E-16 113.3 -2.7 148 23-203 664-811 (881)
133 KOG0153|consensus 99.0 1.3E-09 2.8E-14 91.9 7.5 75 270-350 227-302 (377)
134 KOG0112|consensus 99.0 4.3E-10 9.3E-15 105.7 4.6 169 105-355 365-535 (975)
135 KOG0226|consensus 98.9 1.2E-09 2.5E-14 88.2 5.1 76 271-346 190-265 (290)
136 KOG4210|consensus 98.9 1.7E-09 3.8E-14 92.7 5.9 178 111-352 87-265 (285)
137 KOG0151|consensus 98.8 2.1E-08 4.6E-13 92.1 8.8 92 14-105 162-256 (877)
138 KOG4661|consensus 98.8 4.3E-08 9.3E-13 87.9 9.5 83 23-105 402-484 (940)
139 KOG0533|consensus 98.8 3.6E-08 7.8E-13 81.5 8.1 81 271-352 83-163 (243)
140 KOG4210|consensus 98.7 1.7E-08 3.8E-13 86.6 6.3 167 24-209 86-264 (285)
141 KOG0533|consensus 98.7 6.2E-08 1.3E-12 80.1 8.8 85 22-107 79-163 (243)
142 KOG4209|consensus 98.7 3.9E-08 8.4E-13 81.6 7.1 81 270-351 100-180 (231)
143 KOG4660|consensus 98.7 2.8E-08 6E-13 89.3 5.2 184 103-350 66-249 (549)
144 KOG4676|consensus 98.7 8.4E-09 1.8E-13 88.3 1.6 202 114-339 9-214 (479)
145 KOG0151|consensus 98.6 9.5E-08 2.1E-12 87.9 8.4 86 269-354 172-260 (877)
146 KOG0116|consensus 98.6 3.1E-07 6.7E-12 82.3 9.5 87 21-108 283-369 (419)
147 KOG4209|consensus 98.5 1.8E-07 3.9E-12 77.6 5.7 85 20-105 95-179 (231)
148 KOG0116|consensus 98.5 3.3E-07 7.2E-12 82.1 7.3 80 270-350 287-366 (419)
149 KOG4676|consensus 98.4 2.3E-07 5.1E-12 79.6 4.8 146 28-194 9-213 (479)
150 KOG2193|consensus 98.4 3E-08 6.5E-13 85.8 -0.7 154 27-208 2-156 (584)
151 PF11608 Limkain-b1: Limkain b 98.4 1.4E-06 2.9E-11 58.4 7.2 68 272-349 3-75 (90)
152 KOG0226|consensus 98.4 3.5E-07 7.5E-12 74.2 4.8 82 22-103 186-267 (290)
153 PF11608 Limkain-b1: Limkain b 98.3 3.6E-06 7.9E-11 56.4 7.1 70 27-106 3-77 (90)
154 KOG2193|consensus 98.3 1.5E-07 3.2E-12 81.6 0.4 153 113-350 2-156 (584)
155 PF08777 RRM_3: RNA binding mo 98.3 3E-06 6.5E-11 61.4 6.4 70 271-346 1-75 (105)
156 COG5175 MOT2 Transcriptional r 98.3 2.4E-06 5.1E-11 72.1 6.4 83 23-105 111-202 (480)
157 KOG1995|consensus 98.1 2.1E-06 4.5E-11 73.5 3.5 83 270-352 65-155 (351)
158 PF08777 RRM_3: RNA binding mo 98.0 1.2E-05 2.6E-10 58.3 5.5 70 26-101 1-75 (105)
159 KOG2314|consensus 97.9 3.5E-05 7.5E-10 69.8 7.6 77 270-347 57-140 (698)
160 COG5175 MOT2 Transcriptional r 97.9 2.8E-05 6.1E-10 65.8 6.5 79 273-351 116-203 (480)
161 PF05172 Nup35_RRM: Nup53/35/4 97.9 6.1E-05 1.3E-09 53.6 6.8 76 271-348 6-89 (100)
162 PF14605 Nup35_RRM_2: Nup53/35 97.8 6.3E-05 1.4E-09 47.0 4.7 53 26-85 1-53 (53)
163 KOG3152|consensus 97.7 2E-05 4.3E-10 64.3 2.7 70 273-342 76-157 (278)
164 KOG4849|consensus 97.7 4.1E-05 8.8E-10 65.2 3.7 79 25-103 79-159 (498)
165 KOG3152|consensus 97.6 4.7E-05 1E-09 62.2 3.6 73 25-97 73-157 (278)
166 KOG0115|consensus 97.6 0.00017 3.7E-09 59.1 6.4 88 80-190 6-93 (275)
167 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00016 3.4E-09 45.2 4.7 52 272-330 2-53 (53)
168 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00033 7.2E-09 49.9 6.9 78 25-104 5-90 (100)
169 KOG1996|consensus 97.5 0.0003 6.6E-09 58.6 6.7 80 25-104 280-365 (378)
170 KOG1855|consensus 97.5 0.0001 2.2E-09 64.7 3.5 67 270-336 230-309 (484)
171 KOG4849|consensus 97.4 0.00011 2.4E-09 62.6 3.5 79 267-345 76-156 (498)
172 KOG1996|consensus 97.4 0.00049 1.1E-08 57.4 6.5 80 270-349 280-365 (378)
173 KOG0115|consensus 97.3 0.00077 1.7E-08 55.3 6.8 61 273-334 33-93 (275)
174 KOG1995|consensus 97.3 0.00041 8.9E-09 59.8 5.2 84 23-106 63-154 (351)
175 PF08952 DUF1866: Domain of un 97.3 0.002 4.4E-08 48.8 8.0 72 270-350 26-106 (146)
176 PF08952 DUF1866: Domain of un 97.3 0.0015 3.2E-08 49.5 7.2 79 21-108 22-109 (146)
177 KOG2314|consensus 97.2 0.00068 1.5E-08 61.7 6.3 79 23-102 55-140 (698)
178 KOG1855|consensus 97.2 0.00065 1.4E-08 59.8 5.8 97 94-194 211-311 (484)
179 KOG2202|consensus 97.2 0.00016 3.5E-09 59.3 1.3 63 286-349 83-146 (260)
180 PF10309 DUF2414: Protein of u 97.1 0.0042 9E-08 39.8 6.7 55 26-88 5-62 (62)
181 PF15023 DUF4523: Protein of u 97.0 0.0039 8.5E-08 46.5 7.2 72 270-349 85-160 (166)
182 KOG2416|consensus 96.8 0.0014 3E-08 60.1 4.4 78 21-104 439-520 (718)
183 PF08675 RNA_bind: RNA binding 96.8 0.0099 2.1E-07 40.2 7.2 56 26-90 9-64 (87)
184 KOG2202|consensus 96.8 0.0007 1.5E-08 55.7 2.1 62 42-104 84-146 (260)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 96.7 0.0022 4.7E-08 51.3 4.4 73 23-95 4-82 (176)
186 KOG2416|consensus 96.6 0.0023 4.9E-08 58.8 3.7 77 268-350 441-521 (718)
187 PF07576 BRAP2: BRCA1-associat 96.4 0.054 1.2E-06 39.5 9.2 67 27-95 13-81 (110)
188 KOG2068|consensus 96.3 0.0018 3.9E-08 55.6 1.6 80 273-352 79-164 (327)
189 PF10309 DUF2414: Protein of u 96.2 0.027 5.9E-07 36.0 6.1 53 273-333 7-62 (62)
190 PF15023 DUF4523: Protein of u 96.0 0.044 9.6E-07 41.1 7.2 77 21-105 81-161 (166)
191 PF07576 BRAP2: BRCA1-associat 95.9 0.29 6.2E-06 35.7 11.2 74 273-348 15-92 (110)
192 PF04847 Calcipressin: Calcipr 95.8 0.023 4.9E-07 45.7 5.5 61 284-350 8-70 (184)
193 KOG2135|consensus 95.6 0.011 2.5E-07 52.9 3.2 83 18-107 364-447 (526)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 95.5 0.061 1.3E-06 43.1 7.0 82 270-351 6-98 (176)
195 KOG2591|consensus 95.3 0.031 6.6E-07 51.3 5.2 71 22-99 171-245 (684)
196 PF08675 RNA_bind: RNA binding 95.2 0.15 3.2E-06 34.6 6.8 56 112-190 8-63 (87)
197 KOG2068|consensus 95.1 0.0092 2E-07 51.4 1.2 84 23-106 74-163 (327)
198 KOG0804|consensus 95.0 0.12 2.5E-06 46.5 7.5 68 26-95 74-142 (493)
199 KOG4285|consensus 94.8 0.089 1.9E-06 44.6 6.2 63 272-342 198-260 (350)
200 KOG2135|consensus 94.7 0.019 4.2E-07 51.5 2.1 75 270-351 371-446 (526)
201 KOG0804|consensus 94.6 0.2 4.4E-06 45.0 8.1 69 270-340 73-142 (493)
202 PF07292 NID: Nmi/IFP 35 domai 93.9 0.18 3.8E-06 35.0 5.1 63 71-134 1-74 (88)
203 PF04847 Calcipressin: Calcipr 93.9 0.22 4.8E-06 40.0 6.5 62 39-106 8-71 (184)
204 KOG2253|consensus 93.9 0.074 1.6E-06 50.0 4.2 73 266-347 35-107 (668)
205 PF03880 DbpA: DbpA RNA bindin 93.6 0.37 7.9E-06 32.4 6.2 59 36-103 11-74 (74)
206 KOG4574|consensus 93.5 0.045 9.8E-07 52.8 2.1 70 277-352 304-375 (1007)
207 KOG2591|consensus 93.2 0.21 4.6E-06 46.1 5.8 69 270-345 174-246 (684)
208 KOG2318|consensus 92.8 0.47 1E-05 44.1 7.5 83 267-349 170-306 (650)
209 KOG4285|consensus 92.4 0.47 1E-05 40.5 6.4 69 26-102 197-266 (350)
210 KOG4574|consensus 92.0 0.12 2.5E-06 50.2 2.7 71 30-106 302-374 (1007)
211 PF07292 NID: Nmi/IFP 35 domai 91.3 0.21 4.5E-06 34.6 2.7 23 270-292 51-73 (88)
212 PF03880 DbpA: DbpA RNA bindin 91.0 1 2.2E-05 30.2 5.9 59 281-348 11-74 (74)
213 PF10567 Nab6_mRNP_bdg: RNA-re 90.5 10 0.00023 32.5 14.0 203 107-349 10-230 (309)
214 KOG2318|consensus 90.4 1.3 2.8E-05 41.4 7.6 102 109-210 171-309 (650)
215 PF11767 SET_assoc: Histone ly 90.1 1.9 4.2E-05 28.1 6.2 55 37-100 11-65 (66)
216 PF11767 SET_assoc: Histone ly 89.9 1.7 3.7E-05 28.4 5.8 56 281-345 10-65 (66)
217 PF07530 PRE_C2HC: Associated 84.3 2 4.3E-05 28.3 3.8 63 41-106 2-65 (68)
218 KOG4483|consensus 83.8 4.7 0.0001 36.0 6.9 56 25-88 390-446 (528)
219 PF14111 DUF4283: Domain of un 81.1 2.1 4.6E-05 33.2 3.6 105 37-147 28-140 (153)
220 smart00596 PRE_C2HC PRE_C2HC d 78.5 3.9 8.5E-05 26.8 3.5 64 286-352 2-66 (69)
221 KOG4019|consensus 76.5 2.2 4.8E-05 33.7 2.3 73 272-350 11-89 (193)
222 PF07530 PRE_C2HC: Associated 72.7 8 0.00017 25.4 3.9 64 286-352 2-66 (68)
223 KOG1295|consensus 71.4 5.4 0.00012 35.5 3.8 70 24-93 5-77 (376)
224 KOG2253|consensus 71.1 3.9 8.5E-05 39.0 3.0 77 17-102 31-107 (668)
225 PF10567 Nab6_mRNP_bdg: RNA-re 70.4 8.5 0.00018 33.1 4.5 157 21-191 10-213 (309)
226 PRK14548 50S ribosomal protein 68.7 26 0.00055 24.2 5.8 57 29-88 23-81 (84)
227 KOG4410|consensus 68.2 16 0.00035 31.2 5.7 49 270-324 329-378 (396)
228 smart00596 PRE_C2HC PRE_C2HC d 66.7 11 0.00024 24.7 3.5 62 41-105 2-64 (69)
229 TIGR03636 L23_arch archaeal ri 65.9 34 0.00073 23.2 5.9 58 28-88 15-74 (77)
230 KOG4483|consensus 63.8 11 0.00025 33.7 4.2 54 272-332 392-446 (528)
231 PF03468 XS: XS domain; Inter 63.1 14 0.0003 27.3 4.0 56 273-331 10-75 (116)
232 TIGR03636 L23_arch archaeal ri 60.8 38 0.00083 22.9 5.5 57 274-333 16-74 (77)
233 PRK14548 50S ribosomal protein 59.6 39 0.00085 23.3 5.4 57 274-333 23-81 (84)
234 KOG2891|consensus 59.3 2.2 4.8E-05 36.0 -0.8 80 273-352 151-269 (445)
235 PF15513 DUF4651: Domain of un 59.3 23 0.0005 22.7 3.9 18 41-58 9-26 (62)
236 PF03468 XS: XS domain; Inter 58.3 17 0.00036 26.9 3.7 55 28-85 10-74 (116)
237 KOG4365|consensus 58.1 1.8 3.9E-05 39.1 -1.6 77 273-350 5-81 (572)
238 KOG2295|consensus 54.7 2.2 4.7E-05 39.8 -1.7 73 23-95 228-300 (648)
239 KOG4019|consensus 48.8 19 0.00042 28.6 2.9 75 26-106 10-90 (193)
240 COG5638 Uncharacterized conser 42.9 98 0.0021 28.1 6.5 82 269-350 144-297 (622)
241 KOG4410|consensus 42.3 38 0.00082 29.0 3.8 50 25-79 329-378 (396)
242 COG5193 LHP1 La protein, small 41.7 13 0.00028 33.5 1.0 63 23-85 171-243 (438)
243 KOG4008|consensus 39.4 30 0.00065 28.8 2.7 35 21-55 35-69 (261)
244 KOG2891|consensus 39.4 26 0.00056 29.8 2.4 38 110-147 147-196 (445)
245 KOG4213|consensus 39.3 40 0.00086 26.8 3.2 60 23-87 108-169 (205)
246 COG5193 LHP1 La protein, small 38.4 14 0.0003 33.3 0.7 60 272-331 175-244 (438)
247 PF11823 DUF3343: Protein of u 37.9 50 0.0011 21.9 3.3 29 314-342 2-30 (73)
248 PRK01178 rps24e 30S ribosomal 35.8 1.5E+02 0.0033 21.1 5.5 48 36-84 29-81 (99)
249 PF02714 DUF221: Domain of unk 35.4 82 0.0018 28.0 5.2 56 71-134 1-56 (325)
250 PF02714 DUF221: Domain of unk 34.7 53 0.0012 29.1 3.9 36 172-211 1-36 (325)
251 PHA01632 hypothetical protein 33.9 44 0.00096 20.7 2.2 21 29-49 19-39 (64)
252 PF03439 Spt5-NGN: Early trans 32.8 80 0.0017 21.6 3.7 24 168-191 43-66 (84)
253 KOG2295|consensus 32.7 5.8 0.00013 37.1 -2.5 70 270-339 230-299 (648)
254 PF03439 Spt5-NGN: Early trans 32.4 78 0.0017 21.7 3.6 34 297-335 33-66 (84)
255 PF00276 Ribosomal_L23: Riboso 31.4 59 0.0013 22.7 2.9 51 29-79 22-84 (91)
256 PF10281 Ish1: Putative stress 29.8 49 0.0011 18.6 1.9 17 37-53 3-19 (38)
257 PF13046 DUF3906: Protein of u 28.8 81 0.0018 20.3 2.8 33 39-73 31-63 (64)
258 PRK11901 hypothetical protein; 27.6 2.4E+02 0.0051 25.1 6.4 65 22-90 241-306 (327)
259 KOG4008|consensus 26.9 41 0.00088 28.1 1.6 34 270-303 39-72 (261)
260 PRK11901 hypothetical protein; 26.4 2E+02 0.0043 25.6 5.7 64 267-335 241-306 (327)
261 PTZ00191 60S ribosomal protein 25.7 2.7E+02 0.0059 21.5 5.7 54 29-85 84-139 (145)
262 PF10915 DUF2709: Protein of u 25.3 1.9E+02 0.0041 23.4 4.9 56 52-119 36-91 (238)
263 KOG4213|consensus 25.3 1E+02 0.0023 24.6 3.5 60 111-188 110-169 (205)
264 PF00403 HMA: Heavy-metal-asso 24.6 1.8E+02 0.004 18.0 5.7 54 273-332 1-58 (62)
265 PF07237 DUF1428: Protein of u 24.0 1.7E+02 0.0037 21.1 4.1 63 128-190 24-86 (103)
266 COG5507 Uncharacterized conser 23.8 1.1E+02 0.0023 21.7 2.9 59 132-190 29-87 (117)
267 COG5638 Uncharacterized conser 22.9 2.3E+02 0.0049 25.9 5.5 41 168-208 257-297 (622)
268 PRK08559 nusG transcription an 22.5 2.6E+02 0.0056 21.7 5.3 45 286-335 23-68 (153)
269 CHL00030 rpl23 ribosomal prote 22.2 2.8E+02 0.006 19.6 4.8 34 28-61 20-55 (93)
270 PF14893 PNMA: PNMA 21.6 68 0.0015 28.7 2.1 25 25-49 17-41 (331)
271 PTZ00191 60S ribosomal protein 21.6 3.1E+02 0.0068 21.2 5.3 55 274-331 84-140 (145)
272 PF15063 TC1: Thyroid cancer p 21.6 85 0.0018 21.0 2.0 33 20-52 19-51 (79)
273 PF12829 Mhr1: Transcriptional 21.4 3E+02 0.0065 19.3 4.8 53 278-334 19-72 (91)
274 PRK10905 cell division protein 21.4 2.2E+02 0.0048 25.2 5.1 64 23-90 244-308 (328)
275 KOG4365|consensus 21.3 15 0.00033 33.4 -1.9 78 26-104 3-80 (572)
276 PTZ00071 40S ribosomal protein 21.2 3.3E+02 0.0071 20.7 5.3 48 36-84 34-87 (132)
277 KOG3424|consensus 20.5 2.8E+02 0.006 20.5 4.6 48 36-84 33-85 (132)
278 PF15628 RRM_DME: RRM in Demet 20.4 1.2E+02 0.0027 21.5 2.7 49 87-135 16-77 (103)
279 KOG1295|consensus 20.1 1.3E+02 0.0028 27.2 3.5 67 272-338 8-77 (376)
No 1
>KOG0145|consensus
Probab=100.00 E-value=8e-53 Score=333.78 Aligned_cols=309 Identities=62% Similarity=1.058 Sum_probs=270.1
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
+.+...+.|.|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|-+++||.+|+..|||..+..+.|+|
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHH
Q psy9313 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHI 180 (356)
Q Consensus 101 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~ 180 (356)
.+++|.++..+..+|||.+||+.+|..||.++|++||.|...+|+.+..+ |.++|.+||.|....
T Consensus 116 SyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvt---------------g~srGVgFiRFDKr~ 180 (360)
T KOG0145|consen 116 SYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVT---------------GLSRGVGFIRFDKRI 180 (360)
T ss_pred EeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhccc---------------ceecceeEEEecchh
Confidence 99999999999999999999999999999999999999999999888644 479999999999999
Q ss_pred HHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccc------------
Q psy9313 181 EAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFK------------ 248 (356)
Q Consensus 181 ~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 248 (356)
+|+.||..++|....|+.-+|.|+++..+..... +......+..+.+.+++|++++....
T Consensus 181 EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~--------~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~ 252 (360)
T KOG0145|consen 181 EAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTN--------QALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQ 252 (360)
T ss_pred HHHHHHHhccCCCCCCCCCCeEEEecCCcccccc--------hhhhHHhhcCccccCCCcccchhhhhccccccchhhhh
Confidence 9999999999999999999999999988744332 33345556667788888888774221
Q ss_pred --cCccccccccC-CCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHH
Q psy9313 249 --FAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDE 325 (356)
Q Consensus 249 --~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 325 (356)
++|...+.... ....-...++.+++|||.||..++++.-||++|.+||.|..|++++|..|++++||+||.+.+.++
T Consensus 253 ~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdE 332 (360)
T KOG0145|consen 253 ARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDE 332 (360)
T ss_pred ccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHH
Confidence 22221111110 011112234478999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 326 AVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 326 A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
|..|+..|||..+++|.|+|+|..+|+
T Consensus 333 AamAi~sLNGy~lg~rvLQVsFKtnk~ 359 (360)
T KOG0145|consen 333 AAMAIASLNGYRLGDRVLQVSFKTNKA 359 (360)
T ss_pred HHHHHHHhcCccccceEEEEEEecCCC
Confidence 999999999999999999999999875
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.5e-52 Score=375.32 Aligned_cols=313 Identities=58% Similarity=0.959 Sum_probs=245.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
+.++|||+|||..++|++|+++|+.||+|.+|++++++.+|+++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 47899999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHH
Q psy9313 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184 (356)
Q Consensus 105 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 184 (356)
+........+|||+|||..+++++|+++|+.||.|..+.++.+..++ .++|+|||+|.+.++|+.
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~---------------~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTG---------------LSKGVGFIRFDKRDEADR 146 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCC---------------CcCcEEEEEECCHHHHHH
Confidence 88877788899999999999999999999999999999998876443 478999999999999999
Q ss_pred HHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhc-----ccCCCCccc---------------
Q psy9313 185 AMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMR-----HFGNPLHHS--------------- 244 (356)
Q Consensus 185 a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------------- 244 (356)
|++.|+|..+.++..++.+.++..+.......................+.. ....+.+..
T Consensus 147 ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
T TIGR01661 147 AIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVL 226 (352)
T ss_pred HHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhh
Confidence 999999999999888999999876542211110000000000000000000 000000000
Q ss_pred -------------cccccCcccccccc---CCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCC
Q psy9313 245 -------------ARFKFAPLTADLLN---NSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQ 308 (356)
Q Consensus 245 -------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~ 308 (356)
......+....... ............+.+|||+|||+++++++|+++|++||.|.+|+|++++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~ 306 (352)
T TIGR01661 227 AHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLT 306 (352)
T ss_pred hhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCC
Confidence 00000000000000 00001111234566899999999999999999999999999999999999
Q ss_pred CCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 309 TYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 309 ~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
+|.++|||||+|.+.++|.+|+..|||..|+||.|+|.|+.++.
T Consensus 307 t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 307 TNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999999999999999999999999999875
No 3
>KOG0117|consensus
Probab=100.00 E-value=2e-45 Score=312.74 Aligned_cols=271 Identities=23% Similarity=0.366 Sum_probs=237.1
Q ss_pred cccccccccccCCCCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHH
Q psy9313 3 KHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82 (356)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~ 82 (356)
..++-......+...++...+...|.|||+.||.++.|++|..+|++.|+|-+++++.|+.+|.+||||||.|+++++|+
T Consensus 60 ~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq 139 (506)
T KOG0117|consen 60 VVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQ 139 (506)
T ss_pred EEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHH
Confidence 33445566666777777788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCcee-CCeEEEEEecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCC-eEEEEEecccccccccccccCC
Q psy9313 83 RAIIELNGLKL-QNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGT-IITSRILCDKMASENVRSFVSG 160 (356)
Q Consensus 83 ~a~~~l~g~~~-~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-i~~v~i~~~~~~~~~~~~~~~~ 160 (356)
.|++.||++.| .|+.|.|..+. .+++|||+|+|++.++++|.+.|++.++ |++|.+......+.
T Consensus 140 ~Aik~lnn~Eir~GK~igvc~Sv------an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~-------- 205 (506)
T KOG0117|consen 140 EAIKELNNYEIRPGKLLGVCVSV------ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKT-------- 205 (506)
T ss_pred HHHHHhhCccccCCCEeEEEEee------ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccc--------
Confidence 99999999998 78999998875 4889999999999999999999999884 55666666655543
Q ss_pred CCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCC
Q psy9313 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNP 240 (356)
Q Consensus 161 ~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (356)
+++|||||+|.++..|..|-++|....|.-++..+.|.|+.+.........
T Consensus 206 ------KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~m----------------------- 256 (506)
T KOG0117|consen 206 ------KNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTM----------------------- 256 (506)
T ss_pred ------cccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhh-----------------------
Confidence 789999999999999999999998877777779999999987653322111
Q ss_pred CccccccccCccccccccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEE
Q psy9313 241 LHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCM 320 (356)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f 320 (356)
..-..|||+||+.++|++.|+++|+.||.|.+|+.++| ||||.|
T Consensus 257 ----------------------------s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf 300 (506)
T KOG0117|consen 257 ----------------------------SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHF 300 (506)
T ss_pred ----------------------------hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEee
Confidence 02247999999999999999999999999999998866 999999
Q ss_pred ccHHHHHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 321 TNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 321 ~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
.+.++|.+|++.+||+.|+|..|.|.+|++..
T Consensus 301 ~eR~davkAm~~~ngkeldG~~iEvtLAKP~~ 332 (506)
T KOG0117|consen 301 AEREDAVKAMKETNGKELDGSPIEVTLAKPVD 332 (506)
T ss_pred cchHHHHHHHHHhcCceecCceEEEEecCChh
Confidence 99999999999999999999999999999753
No 4
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3.9e-43 Score=322.65 Aligned_cols=267 Identities=22% Similarity=0.388 Sum_probs=217.8
Q ss_pred ccccccccccCCCCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHH
Q psy9313 4 HEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83 (356)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~ 83 (356)
..+..+....+...++...+...++|||+|||.+++|++|+++|+++|.|.++++++| .+|.++|||||+|.+.++|++
T Consensus 36 ~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~ 114 (578)
T TIGR01648 36 QENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKE 114 (578)
T ss_pred ccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHH
Confidence 3444455555555555555667899999999999999999999999999999999999 689999999999999999999
Q ss_pred HHHHhCCceeC-CeEEEEEecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCC-eEEEEEecccccccccccccCCC
Q psy9313 84 AIIELNGLKLQ-NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGT-IITSRILCDKMASENVRSFVSGT 161 (356)
Q Consensus 84 a~~~l~g~~~~-g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~-i~~v~i~~~~~~~~~~~~~~~~~ 161 (356)
|++.||+..+. |+.|.|.++. ..++|||+|||.++++++|.+.|+.++. +.++.+......
T Consensus 115 Ai~~lng~~i~~Gr~l~V~~S~------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~----------- 177 (578)
T TIGR01648 115 AVKLLNNYEIRPGRLLGVCISV------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAAD----------- 177 (578)
T ss_pred HHHHcCCCeecCCccccccccc------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccc-----------
Confidence 99999999985 7888887664 3678999999999999999999999874 444433322211
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhcCC--CcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCC
Q psy9313 162 PEIPQISKGIGFVRFNQHIEAEHAMQELNGT--IPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGN 239 (356)
Q Consensus 162 ~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~--~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (356)
.+.++|||||+|.++++|.+|+..++.. .+.+ +.|.+.++.+......
T Consensus 178 ---kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~G--r~I~VdwA~p~~~~d~------------------------- 227 (578)
T TIGR01648 178 ---KKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG--HVIAVDWAEPEEEVDE------------------------- 227 (578)
T ss_pred ---cCccCceEEEEcCCHHHHHHHHHHhhccceEecC--ceEEEEeecccccccc-------------------------
Confidence 1147899999999999999999988654 3455 7888888754321100
Q ss_pred CCccccccccCccccccccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCC--CceeEEEEeeCCCCCCcceEEE
Q psy9313 240 PLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPF--GAVQNVKVVRDPQTYKCKGFGF 317 (356)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~~~~~g~af 317 (356)
......++|||+||++.+++++|+++|++| |.|.+|.++ ++|||
T Consensus 228 --------------------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAF 273 (578)
T TIGR01648 228 --------------------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAF 273 (578)
T ss_pred --------------------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEE
Confidence 000133589999999999999999999999 999999775 35999
Q ss_pred EEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 318 VCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 318 V~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
|+|++.++|.+|++.|||..|.|+.|+|+||+++.
T Consensus 274 VeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~ 308 (578)
T TIGR01648 274 VHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVD 308 (578)
T ss_pred EEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 99999999999999999999999999999998754
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=4.5e-43 Score=333.56 Aligned_cols=256 Identities=28% Similarity=0.487 Sum_probs=224.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS 106 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 106 (356)
.+|||+|||.++||++|+++|++||.|.+|+++++..+++++|||||+|.+.++|.+|+..+++..|.|+.|+|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred cc--cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHH
Q psy9313 107 SE--AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184 (356)
Q Consensus 107 ~~--~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 184 (356)
.. .....+|||+|||.++++++|+++|+.||.|.+|++..+..+ .++|||||+|.+.++|++
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g----------------~skg~afV~F~~~e~A~~ 144 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENG----------------KSRGYGFVHFEKEESAKA 144 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCC----------------CcccEEEEEECCHHHHHH
Confidence 32 233568999999999999999999999999999999887543 579999999999999999
Q ss_pred HHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCC
Q psy9313 185 AMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264 (356)
Q Consensus 185 a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (356)
|++.++|..+.+ +.+.+..........
T Consensus 145 Ai~~lng~~~~~--~~i~v~~~~~~~~~~--------------------------------------------------- 171 (562)
T TIGR01628 145 AIQKVNGMLLND--KEVYVGRFIKKHERE--------------------------------------------------- 171 (562)
T ss_pred HHHHhcccEecC--ceEEEeccccccccc---------------------------------------------------
Confidence 999999999988 667665433221110
Q ss_pred CCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC----C
Q psy9313 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG----D 340 (356)
Q Consensus 265 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~----g 340 (356)
.......++|||+|||.++|+++|+++|+.||.|.++.++.+. +|.++|||||+|.+.++|.+|++.|||..+. |
T Consensus 172 ~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g 250 (562)
T TIGR01628 172 AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEG 250 (562)
T ss_pred cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccc
Confidence 0001133479999999999999999999999999999999985 5788999999999999999999999999999 9
Q ss_pred eeEEEEEecCCC
Q psy9313 341 RLLQVSFKTHKP 352 (356)
Q Consensus 341 r~l~v~~a~~~~ 352 (356)
+.|.|.++..+.
T Consensus 251 ~~l~v~~a~~k~ 262 (562)
T TIGR01628 251 KKLYVGRAQKRA 262 (562)
T ss_pred eeeEeecccChh
Confidence 999999887653
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=1.5e-42 Score=329.96 Aligned_cols=269 Identities=31% Similarity=0.527 Sum_probs=227.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
...+|||+|||.++++++|+++|+.||.|.+|++..+. +|.++|||||+|.+.++|.+|++.+||..+.|+.|.|....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~ 165 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFI 165 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEeccc
Confidence 35689999999999999999999999999999999885 68899999999999999999999999999999999998765
Q ss_pred CCccc-----ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCH
Q psy9313 105 PSSEA-----IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQH 179 (356)
Q Consensus 105 ~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 179 (356)
+.... ...++|||+|||.++|+++|+++|+.||.|.++.+..+..+ .++|+|||+|.+.
T Consensus 166 ~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g----------------~~~G~afV~F~~~ 229 (562)
T TIGR01628 166 KKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSG----------------RSRGFAFVNFEKH 229 (562)
T ss_pred cccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC----------------CcccEEEEEECCH
Confidence 43322 34567999999999999999999999999999999887544 5799999999999
Q ss_pred HHHHHHHHHhcCCCcC----CCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccc
Q psy9313 180 IEAEHAMQELNGTIPE----GASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTAD 255 (356)
Q Consensus 180 ~~a~~a~~~~~~~~~~----~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
++|.+|++.+++..+. + ..+.+.++...................
T Consensus 230 e~A~~Av~~l~g~~i~~~~~g--~~l~v~~a~~k~er~~~~~~~~~~~~~------------------------------ 277 (562)
T TIGR01628 230 EDAAKAVEEMNGKKIGLAKEG--KKLYVGRAQKRAEREAELRRKFEELQQ------------------------------ 277 (562)
T ss_pred HHHHHHHHHhCCcEecccccc--eeeEeecccChhhhHHHHHhhHHhhhh------------------------------
Confidence 9999999999999998 6 677777766544332111100000000
Q ss_pred cccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q psy9313 256 LLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335 (356)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 335 (356)
.......+++|||+||++.+++++|+++|++||.|.+|+++.+ .+|.++|||||+|.+.++|.+|+..|||
T Consensus 278 --------~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g 348 (562)
T TIGR01628 278 --------ERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHG 348 (562)
T ss_pred --------hhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcC
Confidence 0000113457999999999999999999999999999999999 6789999999999999999999999999
Q ss_pred cccCCeeEEEEEecCC
Q psy9313 336 YALGDRLLQVSFKTHK 351 (356)
Q Consensus 336 ~~l~gr~l~v~~a~~~ 351 (356)
..++|+.|.|.||..+
T Consensus 349 ~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 349 RMLGGKPLYVALAQRK 364 (562)
T ss_pred CeeCCceeEEEeccCc
Confidence 9999999999999865
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=1.1e-41 Score=316.04 Aligned_cols=297 Identities=18% Similarity=0.238 Sum_probs=216.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHh--CCceeCCeEEEEEe
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL--NGLKLQNKSIKVSY 102 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~g~~~~g~~l~v~~ 102 (356)
++++|||+|||.++++++|+++|++||.|.+|.++++ ++||||+|.+.++|.+|+..+ ++..+.|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 5889999999999999999999999999999999864 369999999999999999764 78899999999999
Q ss_pred cCCCccc------------ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCccc
Q psy9313 103 ARPSSEA------------IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170 (356)
Q Consensus 103 ~~~~~~~------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g 170 (356)
+...... ....+|+|.||++.+|+++|+++|+.||.|.+|.+..+. ..+
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~-------------------~~~ 135 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN-------------------NVF 135 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC-------------------Cce
Confidence 8643211 112368999999999999999999999999999987652 347
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhh----hHH-----------HHHHHHHH-----
Q psy9313 171 IGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAAN----LNA-----------QAAAMRHF----- 230 (356)
Q Consensus 171 ~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~----~~~-----------~~~~~~~~----- 230 (356)
+|||+|.+.++|.+|++.|+|..+.+....+++.++......-...... ... ........
T Consensus 136 ~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~ 215 (481)
T TIGR01649 136 QALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQ 215 (481)
T ss_pred EEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccC
Confidence 8999999999999999999999998766788888876533210000000 000 00000000
Q ss_pred ---hhhhcccCCC----CccccccccCcccccc------ccCCCCC------CCCCCCCCcEEEEecCCC-CCcHHHHHH
Q psy9313 231 ---AAAMRHFGNP----LHHSARFKFAPLTADL------LNNSMLP------PKSLHGSGWCIFVYNLAP-ETEDNVLWQ 290 (356)
Q Consensus 231 ---~~~~~~~~~~----~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~~~l~V~nlp~-~~t~~~L~~ 290 (356)
......++.. .+........+..... ......+ ......++++|||+|||+ .+|+++|++
T Consensus 216 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~ 295 (481)
T TIGR01649 216 HPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFN 295 (481)
T ss_pred CCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHH
Confidence 0000000000 0000000000000000 0000000 011134778999999997 699999999
Q ss_pred hhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCC
Q psy9313 291 LFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351 (356)
Q Consensus 291 ~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~ 351 (356)
+|+.||.|.+|+++++. +|+|||+|.+.++|..|+..|||..|.|+.|+|.+++..
T Consensus 296 lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 296 LFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred HHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 99999999999999873 689999999999999999999999999999999998764
No 8
>KOG0144|consensus
Probab=100.00 E-value=8.4e-42 Score=289.32 Aligned_cols=317 Identities=31% Similarity=0.483 Sum_probs=245.8
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCce-eCC--eE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLK-LQN--KS 97 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g--~~ 97 (356)
..+...-++||+.||..|+|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+..|++.. |.| ..
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 345677899999999999999999999999999999999999999999999999999999999999998765 544 68
Q ss_pred EEEEecCCCccc-ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEe
Q psy9313 98 IKVSYARPSSEA-IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRF 176 (356)
Q Consensus 98 l~v~~~~~~~~~-~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 176 (356)
|.|+++....+. ...++|||+-|++.+||.+++++|++||.|++|.|+++... .++|+|||+|
T Consensus 109 vqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~----------------~sRGcaFV~f 172 (510)
T KOG0144|consen 109 VQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDG----------------LSRGCAFVKF 172 (510)
T ss_pred eeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccc----------------cccceeEEEE
Confidence 899998866544 45789999999999999999999999999999999999866 7999999999
Q ss_pred CCHHHHHHHHHHhcC-CCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHH-----------------HHhh------
Q psy9313 177 NQHIEAEHAMQELNG-TIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR-----------------HFAA------ 232 (356)
Q Consensus 177 ~~~~~a~~a~~~~~~-~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~------ 232 (356)
.+.+.|..||+.||+ ..+.|+..++-|+|++....+.....+..+......- .+..
T Consensus 173 stke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~ 252 (510)
T KOG0144|consen 173 STKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQ 252 (510)
T ss_pred ehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhcc
Confidence 999999999999998 6789999999999999876654433221111100000 0000
Q ss_pred ---hhc-----------------------------------ccCCCCccccc--ccc-------Ccccc-----------
Q psy9313 233 ---AMR-----------------------------------HFGNPLHHSAR--FKF-------APLTA----------- 254 (356)
Q Consensus 233 ---~~~-----------------------------------~~~~~~~~~~~--~~~-------~~~~~----------- 254 (356)
... ..+.|...+.. ... .+.+.
T Consensus 253 ~sqn~g~l~g~~~L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~ 332 (510)
T KOG0144|consen 253 QSQNVGTLGGLPPLGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQL 332 (510)
T ss_pred ccCCCcccccccCCCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhh
Confidence 000 00000000000 000 00000
Q ss_pred ----------ccccCC----------------------------------------------------------------
Q psy9313 255 ----------DLLNNS---------------------------------------------------------------- 260 (356)
Q Consensus 255 ----------~~~~~~---------------------------------------------------------------- 260 (356)
...+..
T Consensus 333 ~~~q~~p~t~~~~n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~ 412 (510)
T KOG0144|consen 333 GARQTFPGTPANYNLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQ 412 (510)
T ss_pred hHhhcCCCCchhcccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhh
Confidence 000000
Q ss_pred -CCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC
Q psy9313 261 -MLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG 339 (356)
Q Consensus 261 -~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 339 (356)
..........+..+||.++|-+.-+.+|...|..||.|.+.++..|..||.++.|+||.|++..+|..|+..|||+.++
T Consensus 413 ~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig 492 (510)
T KOG0144|consen 413 MVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIG 492 (510)
T ss_pred cccCccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhc
Confidence 0000000115788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEEecCCCC
Q psy9313 340 DRLLQVSFKTHKPL 353 (356)
Q Consensus 340 gr~l~v~~a~~~~~ 353 (356)
+++++|..++++.-
T Consensus 493 ~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 493 SKRLKVQLKRDRNN 506 (510)
T ss_pred cccceEEeeeccCC
Confidence 99999999988763
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=1.7e-40 Score=309.13 Aligned_cols=307 Identities=23% Similarity=0.371 Sum_probs=225.2
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
..+..++|||+|||..+++++|+++|+++|.|.+|.++.++.+|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEe
Confidence 3566889999999999999999999999999999999999999999999999999999999999 699999999999998
Q ss_pred ecCCCcc------------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcc
Q psy9313 102 YARPSSE------------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISK 169 (356)
Q Consensus 102 ~~~~~~~------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
++..... .....+|||+|||..+|+++|+++|+.||.|..|.++.+..++ .++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g---------------~~~ 228 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETG---------------RSK 228 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCC---------------ccc
Confidence 8653211 1224789999999999999999999999999999999886553 478
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhh--------------hHHHHHHHHHHhhhh-
Q psy9313 170 GIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAAN--------------LNAQAAAMRHFAAAM- 234 (356)
Q Consensus 170 g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~- 234 (356)
|||||+|.+.++|.+|+..|+|..+.| ++|.|.++............. ...............
T Consensus 229 g~afV~f~~~e~A~~A~~~l~g~~i~g--~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (457)
T TIGR01622 229 GFGFIQFHDAEEAKEALEVMNGFELAG--RPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDG 306 (457)
T ss_pred eEEEEEECCHHHHHHHHHhcCCcEECC--EEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCC
Confidence 999999999999999999999999988 889999876332211110000 000000000000000
Q ss_pred -cccCCCCccc--------ccccc----Ccccccc------ccCCCCCCCCCCCCCcEEEEecCCCCCc----------H
Q psy9313 235 -RHFGNPLHHS--------ARFKF----APLTADL------LNNSMLPPKSLHGSGWCIFVYNLAPETE----------D 285 (356)
Q Consensus 235 -~~~~~~~~~~--------~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~l~V~nlp~~~t----------~ 285 (356)
.....+.... .+... .+..... .............++.+|+|.||....+ .
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~ 386 (457)
T TIGR01622 307 DGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEIL 386 (457)
T ss_pred CccccCCCccchhhhhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHH
Confidence 0000000000 00000 0000000 0000111111334678999999954433 3
Q ss_pred HHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 286 NVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 286 ~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
+||++.|++||.|..|.+... .+.|++||+|.++++|.+|++.|||+.|+|+.|.+.|...
T Consensus 387 ~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 387 DDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcH
Confidence 789999999999999988643 4579999999999999999999999999999999999864
No 10
>KOG0127|consensus
Probab=100.00 E-value=1.9e-40 Score=288.66 Aligned_cols=308 Identities=25% Similarity=0.386 Sum_probs=234.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 105 (356)
..||||++||++++.++|.++|+.+|+|..+.++.+..++..+||+||.|.-.++++.|+...++..+.|+.|.|..+.+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 38999999999999999999999999999999999998889999999999999999999999999999999999999864
Q ss_pred Ccc--------------------------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccC
Q psy9313 106 SSE--------------------------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159 (356)
Q Consensus 106 ~~~--------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~ 159 (356)
... ..+.++|+|+|||+.+...+|+.+|+.||.|.+|.|+....+
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg--------- 155 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG--------- 155 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC---------
Confidence 321 122568999999999999999999999999999999977655
Q ss_pred CCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHH---h--h-h
Q psy9313 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHF---A--A-A 233 (356)
Q Consensus 160 ~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~-~ 233 (356)
..+|||||+|....+|..|+..+++..|.| ++|.|.||-....................... . . .
T Consensus 156 -------klcGFaFV~fk~~~dA~~Al~~~N~~~i~g--R~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~ 226 (678)
T KOG0127|consen 156 -------KLCGFAFVQFKEKKDAEKALEFFNGNKIDG--RPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDD 226 (678)
T ss_pred -------CccceEEEEEeeHHHHHHHHHhccCceecC--ceeEEeeecccccccccchhhhhhhhhccchhhhccccccc
Confidence 456999999999999999999999999999 89999998765543332211100000000000 0 0 0
Q ss_pred hc-------ccCCCCccc-c----ccc---cCccccccccC---C----CCCC------CCCCCCCcEEEEecCCCCCcH
Q psy9313 234 MR-------HFGNPLHHS-A----RFK---FAPLTADLLNN---S----MLPP------KSLHGSGWCIFVYNLAPETED 285 (356)
Q Consensus 234 ~~-------~~~~~~~~~-~----~~~---~~~~~~~~~~~---~----~~~~------~~~~~~~~~l~V~nlp~~~t~ 285 (356)
.. ...+..... . ... ......+.... + .... ......+.||||+|||+++|+
T Consensus 227 ~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tE 306 (678)
T KOG0127|consen 227 GKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTE 306 (678)
T ss_pred ccccchhcccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccH
Confidence 00 000000000 0 000 00000000000 0 0000 111235689999999999999
Q ss_pred HHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHh-----CC-cccCCeeEEEEEecCC
Q psy9313 286 NVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL-----NG-YALGDRLLQVSFKTHK 351 (356)
Q Consensus 286 ~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-----~g-~~l~gr~l~v~~a~~~ 351 (356)
++|.++|++||.|.++.|+.++.|+.++|.|||.|.+..+|+.|+... .| ..|+||.|.|..|-.+
T Consensus 307 Eel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 307 EELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred HHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 999999999999999999999999999999999999999999999976 34 6799999999988653
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=9.5e-38 Score=287.38 Aligned_cols=170 Identities=22% Similarity=0.391 Sum_probs=153.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
....++|||+|||.++++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCc-----------ccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccE
Q psy9313 103 ARPSS-----------EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGI 171 (356)
Q Consensus 103 ~~~~~-----------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 171 (356)
+.... ......+|||+|||.++++++|+++|+.||.|.++.|..+..++ .++||
T Consensus 184 p~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tg---------------ksKGf 248 (612)
T TIGR01645 184 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR---------------GHKGY 248 (612)
T ss_pred cccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCC---------------CcCCe
Confidence 64321 11234689999999999999999999999999999999887653 47999
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccCh
Q psy9313 172 GFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209 (356)
Q Consensus 172 afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~ 209 (356)
|||+|.+.++|.+|+..||+..+.| +.|+|.++..+
T Consensus 249 GFVeFe~~e~A~kAI~amNg~elgG--r~LrV~kAi~p 284 (612)
T TIGR01645 249 GFIEYNNLQSQSEAIASMNLFDLGG--QYLRVGKCVTP 284 (612)
T ss_pred EEEEECCHHHHHHHHHHhCCCeeCC--eEEEEEecCCC
Confidence 9999999999999999999999999 78888887653
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=9.5e-38 Score=289.76 Aligned_cols=280 Identities=21% Similarity=0.316 Sum_probs=212.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEEEe
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN--KSIKVSY 102 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~ 102 (356)
.-.+|+|+||+..+++++|+++|+.||.|.+|.++++.. +++|||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 95 ~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 95 KVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred ceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 345799999999999999999999999999999987642 3689999999999999999999999965 5888888
Q ss_pred cCCCcc--------------------------------------------------------------------------
Q psy9313 103 ARPSSE-------------------------------------------------------------------------- 108 (356)
Q Consensus 103 ~~~~~~-------------------------------------------------------------------------- 108 (356)
+++..-
T Consensus 171 sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR01649 171 AKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSR 250 (481)
T ss_pred ecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCC
Confidence 763110
Q ss_pred ---------------------cccccceEEcCCCC-CCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCC
Q psy9313 109 ---------------------AIKRANLYVSGLPK-HMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166 (356)
Q Consensus 109 ---------------------~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~ 166 (356)
...+.+|||+|||. .+|+++|+++|+.||.|..|+++.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~------------------- 311 (481)
T TIGR01649 251 YRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN------------------- 311 (481)
T ss_pred CcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-------------------
Confidence 01235799999998 6999999999999999999999876
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccc
Q psy9313 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSAR 246 (356)
Q Consensus 167 ~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (356)
.+|+|||+|.+.++|..|+..|+|..+.| ++|.|.++................ ...+ ..+... ...+
T Consensus 312 -~~g~afV~f~~~~~A~~Ai~~lng~~l~g--~~l~v~~s~~~~~~~~~~~~~~~~----~~~~----~d~~~~--~~~r 378 (481)
T TIGR01649 312 -KKETALIEMADPYQAQLALTHLNGVKLFG--KPLRVCPSKQQNVQPPREGQLDDG----LTSY----KDYSSS--RNHR 378 (481)
T ss_pred -CCCEEEEEECCHHHHHHHHHHhCCCEECC--ceEEEEEcccccccCCCCCcCcCC----Cccc----ccccCC--cccc
Confidence 37999999999999999999999999999 788888765432110000000000 0000 000000 0000
Q ss_pred cccCccccccccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCc--eeEEEEeeCCCCCCcceEEEEEEccHH
Q psy9313 247 FKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGA--VQNVKVVRDPQTYKCKGFGFVCMTNYD 324 (356)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~ 324 (356)
... ...........++.+|+|.|||..+++++|+++|+.||. |..+++.... + ..+++|||+|.+.+
T Consensus 379 --~~~-------~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~-~-~~~~~gfVeF~~~e 447 (481)
T TIGR01649 379 --FKK-------PGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD-N-ERSKMGLLEWESVE 447 (481)
T ss_pred --CCC-------cccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC-C-CcceeEEEEcCCHH
Confidence 000 000001112346789999999999999999999999998 8888886543 2 35799999999999
Q ss_pred HHHHHHHHhCCcccCCee------EEEEEecCC
Q psy9313 325 EAVFAIQSLNGYALGDRL------LQVSFKTHK 351 (356)
Q Consensus 325 ~A~~a~~~l~g~~l~gr~------l~v~~a~~~ 351 (356)
+|.+|+..|||..|.|+. |+|+|++++
T Consensus 448 ~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 448 DAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999985 999999864
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.5e-38 Score=300.18 Aligned_cols=279 Identities=19% Similarity=0.305 Sum_probs=209.8
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhcc------------CCceeEEEEecCCCCccceEEEEEecCHHHHHHHHH
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSV------------GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~------------g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~ 86 (356)
.+......++|||+|||+.+|+++|+++|..+ +.|..+.+ +..+|||||+|.+.++|..|+
T Consensus 168 ~~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al- 240 (509)
T TIGR01642 168 QQQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM- 240 (509)
T ss_pred CccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-
Confidence 44567788999999999999999999999975 23344433 345689999999999999999
Q ss_pred HhCCceeCCeEEEEEecCCCc-----------------------------ccccccceEEcCCCCCCCHHHHHHhhcccC
Q psy9313 87 ELNGLKLQNKSIKVSYARPSS-----------------------------EAIKRANLYVSGLPKHMTQEDLENLFRPYG 137 (356)
Q Consensus 87 ~l~g~~~~g~~l~v~~~~~~~-----------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g 137 (356)
.|+|..|.|+.|.|....... ......+|||+|||..+|+++|+++|+.||
T Consensus 241 ~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G 320 (509)
T TIGR01642 241 ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFG 320 (509)
T ss_pred cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 699999999999997543111 012246899999999999999999999999
Q ss_pred CeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHh
Q psy9313 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALA 217 (356)
Q Consensus 138 ~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~ 217 (356)
.|..+.++.+..++ .++|||||+|.+.++|..|+..|+|..+.+ ..|.|.++...........
T Consensus 321 ~i~~~~~~~~~~~g---------------~~~g~afv~f~~~~~a~~A~~~l~g~~~~~--~~l~v~~a~~~~~~~~~~~ 383 (509)
T TIGR01642 321 DLKAFNLIKDIATG---------------LSKGYAFCEYKDPSVTDVAIAALNGKDTGD--NKLHVQRACVGANQATIDT 383 (509)
T ss_pred CeeEEEEEecCCCC---------------CcCeEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEECccCCCCCCccc
Confidence 99999998876543 589999999999999999999999999999 7788888754321110000
Q ss_pred hhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCCcEEEEecCCCC----------CcHHH
Q psy9313 218 ANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPE----------TEDNV 287 (356)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~----------~t~~~ 287 (356)
.. . ..+.. ..... ..... ......++.+|+|.|+... ...++
T Consensus 384 ~~--~---------------~~~~~------~~~~~---~~~~~--~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~ed 435 (509)
T TIGR01642 384 SN--G---------------MAPVT------LLAKA---LSQSI--LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYED 435 (509)
T ss_pred cc--c---------------ccccc------ccccc---chhhh--ccccCCCceEEEeccCCchhHhcCcchHHHHHHH
Confidence 00 0 00000 00000 00000 0011225678999999632 12368
Q ss_pred HHHhhcCCCceeEEEEeeCC---CCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 288 LWQLFGPFGAVQNVKVVRDP---QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 288 L~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
|+++|++||.|..|.|+++. .++.+.|+|||+|.+.++|.+|+..|||..|+|+.|.|.|..
T Consensus 436 l~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 436 VKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred HHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 99999999999999998752 335567999999999999999999999999999999999975
No 14
>KOG0148|consensus
Probab=100.00 E-value=1.4e-36 Score=242.81 Aligned_cols=232 Identities=25% Similarity=0.470 Sum_probs=193.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
....+||||+||.+++||+-|..+|++.|.+..++++.+ .++|.|
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-----------------------------------e~~v~w 47 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-----------------------------------ELKVNW 47 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-----------------------------------hhcccc
Confidence 456789999999999999999999999999999988765 455555
Q ss_pred cCC-----CcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeC
Q psy9313 103 ARP-----SSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFN 177 (356)
Q Consensus 103 ~~~-----~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~ 177 (356)
+.. +......-.|||+.|...++.++|++.|.+||+|.+.+|++|..+.+ ++||+||.|-
T Consensus 48 a~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~K---------------sKGYgFVSf~ 112 (321)
T KOG0148|consen 48 ATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGK---------------SKGYGFVSFP 112 (321)
T ss_pred ccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCc---------------ccceeEEecc
Confidence 532 22223355699999999999999999999999999999999988864 8999999999
Q ss_pred CHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccc
Q psy9313 178 QHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLL 257 (356)
Q Consensus 178 ~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (356)
+.++|+.||+.|+|.=|.. +.|+..++..+....... ......
T Consensus 113 ~k~dAEnAI~~MnGqWlG~--R~IRTNWATRKp~e~n~~------~ltfde----------------------------- 155 (321)
T KOG0148|consen 113 NKEDAENAIQQMNGQWLGR--RTIRTNWATRKPSEMNGK------PLTFDE----------------------------- 155 (321)
T ss_pred chHHHHHHHHHhCCeeecc--ceeeccccccCccccCCC------CccHHH-----------------------------
Confidence 9999999999999999999 889998887654110000 000000
Q ss_pred cCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcc
Q psy9313 258 NNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYA 337 (356)
Q Consensus 258 ~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 337 (356)
--......+|+|||+||+..+|+++|++.|++||.|.+|++.++ +||+||.|++.++|..|+..|||..
T Consensus 156 -----V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNnte 224 (321)
T KOG0148|consen 156 -----VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTE 224 (321)
T ss_pred -----HhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCce
Confidence 01122336789999999999999999999999999999999998 7999999999999999999999999
Q ss_pred cCCeeEEEEEecCCC
Q psy9313 338 LGDRLLQVSFKTHKP 352 (356)
Q Consensus 338 l~gr~l~v~~a~~~~ 352 (356)
|+|..++..|.+...
T Consensus 225 i~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 225 IGGQLVRCSWGKEGD 239 (321)
T ss_pred eCceEEEEeccccCC
Confidence 999999999998754
No 15
>KOG0123|consensus
Probab=100.00 E-value=6.2e-34 Score=251.01 Aligned_cols=244 Identities=32% Similarity=0.526 Sum_probs=214.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS 106 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 106 (356)
..|||+ +++||..|.++|+.+|++.++++.++. + +.|||||.|.++++|.+|+..+|...+.|+.+++.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468998 899999999999999999999999998 5 9999999999999999999999999999999999999865
Q ss_pred cccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHH
Q psy9313 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAM 186 (356)
Q Consensus 107 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 186 (356)
... |||.||+.++|..+|.+.|+.||.|.+|++..+..+ ++|+ ||+|.++++|++|+
T Consensus 76 ~~~-----~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-----------------~kg~-FV~f~~e~~a~~ai 132 (369)
T KOG0123|consen 76 PSL-----VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-----------------SKGY-FVQFESEESAKKAI 132 (369)
T ss_pred Cce-----eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-----------------ceee-EEEeCCHHHHHHHH
Confidence 444 999999999999999999999999999999998755 7899 99999999999999
Q ss_pred HHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCC
Q psy9313 187 QELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKS 266 (356)
Q Consensus 187 ~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (356)
+.++|..+.+ .++.+........+......
T Consensus 133 ~~~ng~ll~~--kki~vg~~~~~~er~~~~~~------------------------------------------------ 162 (369)
T KOG0123|consen 133 EKLNGMLLNG--KKIYVGLFERKEEREAPLGE------------------------------------------------ 162 (369)
T ss_pred HHhcCcccCC--CeeEEeeccchhhhcccccc------------------------------------------------
Confidence 9999999999 66777665544332211110
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 267 LHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 267 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
....-+.+++.|.+.+++++.|..+|+.+|.|.++.++.+.. |+++||+||.|.++++|..|+..||+..+.|..+.|.
T Consensus 163 ~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~ 241 (369)
T KOG0123|consen 163 YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVG 241 (369)
T ss_pred hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHHHHHHHhccCCcCCccceeec
Confidence 000122489999999999999999999999999999999875 5689999999999999999999999999999999888
Q ss_pred EecC
Q psy9313 347 FKTH 350 (356)
Q Consensus 347 ~a~~ 350 (356)
-+..
T Consensus 242 ~aqk 245 (369)
T KOG0123|consen 242 RAQK 245 (369)
T ss_pred cccc
Confidence 7765
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=9.4e-34 Score=248.79 Aligned_cols=175 Identities=46% Similarity=0.860 Sum_probs=163.3
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
......++|||+|||.++|+++|+++|+.||+|.+|+|+++..+++++|||||+|.++++|.+|++.|++..+.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHH
Q psy9313 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHI 180 (356)
Q Consensus 101 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~ 180 (356)
.++++........+|||+|||..+|+++|+++|++||.|..+.|+.++.++ .++++|||+|.+.+
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg---------------~~kG~aFV~F~~~e 246 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTG---------------TPRGVAFVRFNKRE 246 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCC---------------ccceEEEEEECCHH
Confidence 999987777778899999999999999999999999999999999886553 47899999999999
Q ss_pred HHHHHHHHhcCCCcCCCcccEEEEEccChh
Q psy9313 181 EAEHAMQELNGTIPEGASEPITVKFANSPA 210 (356)
Q Consensus 181 ~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~ 210 (356)
+|++|++.|++..+.+..+++.|.++....
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 999999999999998888899999887654
No 17
>KOG0123|consensus
Probab=100.00 E-value=1e-31 Score=237.04 Aligned_cols=264 Identities=33% Similarity=0.531 Sum_probs=221.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCCcc
Q psy9313 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE 108 (356)
Q Consensus 29 l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~ 108 (356)
|||.||+++++.++|.++|+.||.|.+|++..+. .| ++|| ||+|.++++|++|+..+||..+.|+.|.|....+...
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999986 35 9999 9999999999999999999999999999988765433
Q ss_pred --------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHH
Q psy9313 109 --------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHI 180 (356)
Q Consensus 109 --------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~ 180 (356)
...-..+++.+++.+.+++.|.++|..+|+|.++.++.+..+ .+++++||.|.+.+
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g----------------~~~~~gfv~f~~~e 219 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG----------------KSKGFGFVNFENPE 219 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC----------------CCCCccceeecChh
Confidence 234557999999999999999999999999999999988766 57999999999999
Q ss_pred HHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCC
Q psy9313 181 EAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNS 260 (356)
Q Consensus 181 ~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (356)
+|..|+..+++....+ ..+.+..+............... +.. .
T Consensus 220 ~a~~av~~l~~~~~~~--~~~~V~~aqkk~e~~~~l~~~~~-~~~-----~----------------------------- 262 (369)
T KOG0123|consen 220 DAKKAVETLNGKIFGD--KELYVGRAQKKSEREAELKRKFE-QEF-----A----------------------------- 262 (369)
T ss_pred HHHHHHHhccCCcCCc--cceeecccccchhhHHHHhhhhH-hhh-----h-----------------------------
Confidence 9999999999999887 67777776653222111110000 000 0
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC
Q psy9313 261 MLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340 (356)
Q Consensus 261 ~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 340 (356)
..........|||.|++..++.+.|+..|+.||.|.+++++.+. .|.++|++||+|.+.++|.+|+..+||..+.|
T Consensus 263 ---~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~ 338 (369)
T KOG0123|consen 263 ---KRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGG 338 (369)
T ss_pred ---hccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhChhhhcC
Confidence 00001133469999999999999999999999999999999986 47899999999999999999999999999999
Q ss_pred eeEEEEEecCCC
Q psy9313 341 RLLQVSFKTHKP 352 (356)
Q Consensus 341 r~l~v~~a~~~~ 352 (356)
+.+.|.++..+.
T Consensus 339 k~l~vav~qr~~ 350 (369)
T KOG0123|consen 339 KPLYVAVAQRKE 350 (369)
T ss_pred CchhhhHHhhhc
Confidence 999998887544
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=3.4e-31 Score=232.67 Aligned_cols=171 Identities=29% Similarity=0.419 Sum_probs=151.3
Q ss_pred cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy9313 109 AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188 (356)
Q Consensus 109 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 188 (356)
....++|||+|||+++|+++|+++|+.||+|++|+|+.+..++ .++|||||+|.++++|++|++.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg---------------~srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTG---------------YSFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCC---------------ccCcEEEEEEccHHHHHHHHHH
Confidence 3457789999999999999999999999999999999886553 5799999999999999999999
Q ss_pred hcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCC
Q psy9313 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLH 268 (356)
Q Consensus 189 ~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (356)
|++..+.+ ++|.+.++.+... .
T Consensus 169 LnG~~l~g--r~i~V~~a~p~~~--------------------------------------------------------~ 190 (346)
T TIGR01659 169 LNGITVRN--KRLKVSYARPGGE--------------------------------------------------------S 190 (346)
T ss_pred cCCCccCC--ceeeeeccccccc--------------------------------------------------------c
Confidence 99999998 7788877643110 0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC--eeEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD--RLLQVS 346 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g--r~l~v~ 346 (356)
...++|||.|||..+|+++|+++|++||.|..++|+++..+++++|+|||+|.+.++|.+|++.||+..+.| +.|+|.
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 023469999999999999999999999999999999999999999999999999999999999999999876 799999
Q ss_pred EecCCC
Q psy9313 347 FKTHKP 352 (356)
Q Consensus 347 ~a~~~~ 352 (356)
||....
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 998643
No 19
>KOG0124|consensus
Probab=99.98 E-value=1.6e-30 Score=216.51 Aligned_cols=165 Identities=22% Similarity=0.394 Sum_probs=148.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 105 (356)
.|+|||+.|.+.+.|+-|+.+|..||+|.+|.+.+|..|++++|||||+|.-++.|..|++.|||..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999986542
Q ss_pred C-----------cccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEE
Q psy9313 106 S-----------SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174 (356)
Q Consensus 106 ~-----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 174 (356)
- .+...-.+|||..+..+++++||+..|+.||+|..|.+-.....+ ..+||+|+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~---------------~HkGyGfi 257 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR---------------GHKGYGFI 257 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC---------------CccceeeE
Confidence 1 122345689999999999999999999999999999999887664 48999999
Q ss_pred EeCCHHHHHHHHHHhcCCCcCCCcccEEEEEcc
Q psy9313 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207 (356)
Q Consensus 175 ~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~ 207 (356)
+|.+..+-..|+..||=..+.| .-++|...-
T Consensus 258 Ey~n~qs~~eAiasMNlFDLGG--QyLRVGk~v 288 (544)
T KOG0124|consen 258 EYNNLQSQSEAIASMNLFDLGG--QYLRVGKCV 288 (544)
T ss_pred EeccccchHHHhhhcchhhccc--ceEeccccc
Confidence 9999999999999998888888 666665543
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=1.4e-30 Score=240.09 Aligned_cols=181 Identities=23% Similarity=0.395 Sum_probs=152.1
Q ss_pred cccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
..++|||+|||+++++++|+++|+.||+|.+|.|+.+..++ .++|||||+|.+.++|++|++.++
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tg---------------kskGfAFVeF~s~e~A~~Ai~~ln 170 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG---------------KHKGFAFVEYEVPEAAQLALEQMN 170 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCC---------------CcCCeEEEEeCcHHHHHHHHHhcC
Confidence 35689999999999999999999999999999999887654 589999999999999999999999
Q ss_pred CCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCC
Q psy9313 191 GTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGS 270 (356)
Q Consensus 191 ~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (356)
|..+.| +.|++.+........ +. ... .......
T Consensus 171 G~~i~G--R~IkV~rp~~~p~a~--------------------------~~----------------~~~---~~~~~~~ 203 (612)
T TIGR01645 171 GQMLGG--RNIKVGRPSNMPQAQ--------------------------PI----------------IDM---VQEEAKK 203 (612)
T ss_pred CeEEec--ceeeecccccccccc--------------------------cc----------------ccc---ccccccc
Confidence 999999 677776432110000 00 000 0000113
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
.++|||+|||..+++++|+++|+.||.|.++++++++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|+|.++..
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC
Q psy9313 351 KPL 353 (356)
Q Consensus 351 ~~~ 353 (356)
+|.
T Consensus 284 pP~ 286 (612)
T TIGR01645 284 PPD 286 (612)
T ss_pred Ccc
Confidence 653
No 21
>KOG0110|consensus
Probab=99.97 E-value=6.1e-30 Score=230.40 Aligned_cols=264 Identities=25% Similarity=0.381 Sum_probs=215.3
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
..+..+.|+++|||..+..++|..+|..||.|..+.+++. |. .|+|.|.+..+|++|.+.|....+....+.+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle 454 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLE 454 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCccccc
Confidence 6677899999999999999999999999999999966543 21 59999999999999999999988888887777
Q ss_pred ecCC-------Ccc-------------------------------------------cccccceEEcCCCCCCCHHHHHH
Q psy9313 102 YARP-------SSE-------------------------------------------AIKRANLYVSGLPKHMTQEDLEN 131 (356)
Q Consensus 102 ~~~~-------~~~-------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~ 131 (356)
|+.. +.. ....++||+.||+++.|.+++..
T Consensus 455 ~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~ 534 (725)
T KOG0110|consen 455 WAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLED 534 (725)
T ss_pred cChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHH
Confidence 7631 000 01112399999999999999999
Q ss_pred hhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhh
Q psy9313 132 LFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAG 211 (356)
Q Consensus 132 ~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~ 211 (356)
+|...|.|.++.|...+.... -..+.|||||+|.+.++|+.|++.|+|..+.| +.+.+.++....
T Consensus 535 ~F~k~G~VlS~~I~kkkd~~~------------k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG--H~l~lk~S~~k~- 599 (725)
T KOG0110|consen 535 LFSKQGTVLSIEISKKKDPAN------------KYLSMGFGFVEFAKPESAQAALKALQGTVLDG--HKLELKISENKP- 599 (725)
T ss_pred HHHhcCeEEEEEEeccccccc------------cccccceeEEEecCHHHHHHHHHHhcCceecC--ceEEEEeccCcc-
Confidence 999999999999887654421 11467999999999999999999999999999 777777665100
Q ss_pred hhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHh
Q psy9313 212 RAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQL 291 (356)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~ 291 (356)
.. ...........++.|+|+|||+..+-.+++++
T Consensus 600 -~~---------------------------------------------~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~L 633 (725)
T KOG0110|consen 600 -AS---------------------------------------------TVGKKKSKKKKGTKILVRNIPFEATKREVRKL 633 (725)
T ss_pred -cc---------------------------------------------ccccccccccccceeeeeccchHHHHHHHHHH
Confidence 00 00011111123568999999999999999999
Q ss_pred hcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 292 FGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 292 f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
|..||.+.+|+|+.-...+..+|||||+|-++++|.+|+++|.+..|.||+|.+.||++-.
T Consensus 634 F~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 634 FTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDN 694 (725)
T ss_pred HhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccch
Confidence 9999999999999875556679999999999999999999999999999999999998743
No 22
>KOG0147|consensus
Probab=99.96 E-value=2e-29 Score=221.20 Aligned_cols=305 Identities=20% Similarity=0.310 Sum_probs=219.2
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
....+..+++++-.|+...++.||.++|+.+|+|.+|.++.|+.+++++|.|||+|.+.++...|+ .|.|..+.|.+|.
T Consensus 173 ~~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~ 251 (549)
T KOG0147|consen 173 SPEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVI 251 (549)
T ss_pred CchHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeE
Confidence 345677889999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred EEecCCCc--------------ccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCC
Q psy9313 100 VSYARPSS--------------EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIP 165 (356)
Q Consensus 100 v~~~~~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~ 165 (356)
|..+.... -..+-..|||+||.++++++.|+.+|+.||.|..|.+..+..++
T Consensus 252 vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG-------------- 317 (549)
T KOG0147|consen 252 VQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETG-------------- 317 (549)
T ss_pred ecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccc--------------
Confidence 98764211 01122239999999999999999999999999999999987553
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHH---hhh-----------hHHHHHHHHHHh
Q psy9313 166 QISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKAL---AAN-----------LNAQAAAMRHFA 231 (356)
Q Consensus 166 ~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~---~~~-----------~~~~~~~~~~~~ 231 (356)
.++||+||+|.+.++|.+|+..++|..+.| +.|+|............. .+. ...........+
T Consensus 318 -~skgfGfi~f~~~~~ar~a~e~lngfelAG--r~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla 394 (549)
T KOG0147|consen 318 -RSKGFGFITFVNKEDARKALEQLNGFELAG--RLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLA 394 (549)
T ss_pred -cccCcceEEEecHHHHHHHHHHhccceecC--ceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHh
Confidence 699999999999999999999999988888 667776544433322110 000 000000000000
Q ss_pred hhhcccCCCCccc---------cccccCccc--cccccCCCCCCCCCCCCCcEEEEecCC--CCCc--------HHHHHH
Q psy9313 232 AAMRHFGNPLHHS---------ARFKFAPLT--ADLLNNSMLPPKSLHGSGWCIFVYNLA--PETE--------DNVLWQ 290 (356)
Q Consensus 232 ~~~~~~~~~~~~~---------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~V~nlp--~~~t--------~~~L~~ 290 (356)
........+.... ....+.... ....+... ......++.++.+.|+= ...| .+|+.+
T Consensus 395 ~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~--~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~E 472 (549)
T KOG0147|consen 395 EGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA--SPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIE 472 (549)
T ss_pred ccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccc--ccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHH
Confidence 0000000000000 000000000 00000000 11112466778899983 2222 288899
Q ss_pred hhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 291 LFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 291 ~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.+++||.|.+|.+.+. +.|++||.|.+.+.|..|..+|||.+|.||.|...|-.
T Consensus 473 ec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 473 ECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred HHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 9999999999887554 35999999999999999999999999999999999854
No 23
>KOG0148|consensus
Probab=99.96 E-value=7e-29 Score=198.84 Aligned_cols=164 Identities=30% Similarity=0.547 Sum_probs=151.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 105 (356)
..-|+|+.|...++.++|+++|.+||+|.++++++|..|++++||+||.|.++++|..|+..|||.-|.+|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred Ccc----------------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcc
Q psy9313 106 SSE----------------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISK 169 (356)
Q Consensus 106 ~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
+.. +..+++||++|++..+|+++|++.|++||+|.+|++.++ +
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---------------------q 200 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---------------------Q 200 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---------------------c
Confidence 532 345678999999999999999999999999999999987 7
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhh
Q psy9313 170 GIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212 (356)
Q Consensus 170 g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~ 212 (356)
||+||.|.+.|.|.+||..+++..+.| ..++-.+.+.....
T Consensus 201 GYaFVrF~tkEaAahAIv~mNntei~G--~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 201 GYAFVRFETKEAAAHAIVQMNNTEIGG--QLVRCSWGKEGDDG 241 (321)
T ss_pred ceEEEEecchhhHHHHHHHhcCceeCc--eEEEEeccccCCCC
Confidence 999999999999999999999999999 77888777654443
No 24
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=4e-28 Score=218.89 Aligned_cols=167 Identities=32% Similarity=0.508 Sum_probs=148.8
Q ss_pred ccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy9313 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191 (356)
Q Consensus 112 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 191 (356)
..+|||+|||.++++++|+++|+.||+|.+|.|+.++.++ .++|||||+|.+.++|++|+..++|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g---------------~s~g~afV~f~~~~~A~~Ai~~l~g 67 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTG---------------QSLGYGFVNYVRPEDAEKAVNSLNG 67 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCC---------------ccceEEEEEECcHHHHHHHHhhccc
Confidence 5789999999999999999999999999999999886553 5899999999999999999999999
Q ss_pred CCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCC
Q psy9313 192 TIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSG 271 (356)
Q Consensus 192 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (356)
..+.| +.+.+.++.+... ....
T Consensus 68 ~~l~g--~~i~v~~a~~~~~--------------------------------------------------------~~~~ 89 (352)
T TIGR01661 68 LRLQN--KTIKVSYARPSSD--------------------------------------------------------SIKG 89 (352)
T ss_pred EEECC--eeEEEEeeccccc--------------------------------------------------------cccc
Confidence 99999 7788887643210 0123
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC--eeEEEEEec
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD--RLLQVSFKT 349 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g--r~l~v~~a~ 349 (356)
++|||+|||..+++++|+++|++||.|..+.++.+..++.++|+|||+|.+.++|..|++.|||..+.| +.|.|.|+.
T Consensus 90 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 90 ANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFAN 169 (352)
T ss_pred ceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 479999999999999999999999999999999998888999999999999999999999999999887 678999986
Q ss_pred CC
Q psy9313 350 HK 351 (356)
Q Consensus 350 ~~ 351 (356)
.+
T Consensus 170 ~~ 171 (352)
T TIGR01661 170 NP 171 (352)
T ss_pred CC
Confidence 54
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=2.3e-27 Score=221.07 Aligned_cols=179 Identities=27% Similarity=0.461 Sum_probs=149.9
Q ss_pred ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy9313 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189 (356)
Q Consensus 110 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 189 (356)
...++|||+|||..+++++|+++|+.||.|.+|.++.+..++ .++|+|||+|.+.++|.+|+. +
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~---------------~skg~afVeF~~~e~A~~Al~-l 150 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSR---------------RSKGVAYVEFYDVESVIKALA-L 150 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCC---------------CcceEEEEEECCHHHHHHHHH-h
Confidence 446789999999999999999999999999999999886553 589999999999999999997 8
Q ss_pred cCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCC
Q psy9313 190 NGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHG 269 (356)
Q Consensus 190 ~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (356)
+|..+.| .+|.+.............. . .. .....
T Consensus 151 ~g~~~~g--~~i~v~~~~~~~~~~~~~~---------------------~------------------~~-----~~~~p 184 (457)
T TIGR01622 151 TGQMLLG--RPIIVQSSQAEKNRAAKAA---------------------T------------------HQ-----PGDIP 184 (457)
T ss_pred CCCEECC--eeeEEeecchhhhhhhhcc---------------------c------------------cc-----CCCCC
Confidence 9999998 7777765432211100000 0 00 00001
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|+|..|.|+.|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 25689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 4
No 26
>KOG0144|consensus
Probab=99.95 E-value=1.9e-27 Score=202.41 Aligned_cols=175 Identities=28% Similarity=0.486 Sum_probs=154.5
Q ss_pred cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy9313 109 AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188 (356)
Q Consensus 109 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 188 (356)
....-++||+-+|..++|.||+.+|++||.|.+|.|++|+.++ .++|+|||.|.+.++|.+|+..
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~---------------~s~gcCFv~~~trk~a~~a~~A 95 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTG---------------QSKGCCFVKYYTRKEADEAINA 95 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccC---------------cccceEEEEeccHHHHHHHHHH
Confidence 3455689999999999999999999999999999999999885 4899999999999999999999
Q ss_pred hcC-CCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCC
Q psy9313 189 LNG-TIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSL 267 (356)
Q Consensus 189 ~~~-~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (356)
|++ ..+.|...++.+++++....+.
T Consensus 96 lhn~ktlpG~~~pvqvk~Ad~E~er~------------------------------------------------------ 121 (510)
T KOG0144|consen 96 LHNQKTLPGMHHPVQVKYADGERERI------------------------------------------------------ 121 (510)
T ss_pred hhcccccCCCCcceeecccchhhhcc------------------------------------------------------
Confidence 987 5678888999999987654321
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCc-ccCC--eeEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY-ALGD--RLLQ 344 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~-~l~g--r~l~ 344 (356)
.....|||+-|+..+|+.+++++|++||.|++|.|+++++ +.+||||||.|.+.+-|..|++.|||. .+.| ..|.
T Consensus 122 -~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 122 -VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred -ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 0233699999999999999999999999999999999985 799999999999999999999999996 4777 6899
Q ss_pred EEEecCCCCC
Q psy9313 345 VSFKTHKPLP 354 (356)
Q Consensus 345 v~~a~~~~~~ 354 (356)
|.||..+...
T Consensus 200 VkFADtqkdk 209 (510)
T KOG0144|consen 200 VKFADTQKDK 209 (510)
T ss_pred EEecccCCCc
Confidence 9999876643
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=2e-26 Score=212.55 Aligned_cols=223 Identities=23% Similarity=0.292 Sum_probs=167.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC-ceeEEEEe-cCCCCccceEEEEEecCHHHHHHHHHHhCC--ceeCCeEEE
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGE-VESCKLIR-DKTTAQSLGYGFVNYYRTEDAERAIIELNG--LKLQNKSIK 99 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~-i~~i~~~~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~~~g~~l~ 99 (356)
..+++|||+|||.++++++|.+.|++++. +.++.+.. ....++++|||||+|.+.++|..|++.|+. ..+.|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 45789999999999999999999999863 45554433 233467899999999999999999988763 468899999
Q ss_pred EEecCCCccc-----ccccceEEcCCCCCCCHHHHHHhhccc--CCeEEEEEecccccccccccccCCCCCCCCCcccEE
Q psy9313 100 VSYARPSSEA-----IKRANLYVSGLPKHMTQEDLENLFRPY--GTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172 (356)
Q Consensus 100 v~~~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~--g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~a 172 (356)
|.|+.+.... ....+|||+||+.++|+++|+++|+.| |.|..|.++ ++||
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----------------------rgfA 272 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----------------------RDYA 272 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----------------------cCeE
Confidence 9999876532 234679999999999999999999999 999988763 5799
Q ss_pred EEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCcc
Q psy9313 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPL 252 (356)
Q Consensus 173 fV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (356)
||+|.+.++|.+|++.|++..|.+ +.|.|.++.+......... . ...+...... .
T Consensus 273 FVeF~s~e~A~kAi~~lnG~~i~G--r~I~V~~Akp~~~~~~~~~-------------~---rg~gg~~~~~-~------ 327 (578)
T TIGR01648 273 FVHFEDREDAVKAMDELNGKELEG--SEIEVTLAKPVDKKSYVRY-------------T---RGTGGRGKER-Q------ 327 (578)
T ss_pred EEEeCCHHHHHHHHHHhCCCEECC--EEEEEEEccCCCccccccc-------------c---cccCCCcccc-c------
Confidence 999999999999999999999999 8899998865432110000 0 0000000000 0
Q ss_pred ccccccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCcee
Q psy9313 253 TADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQ 299 (356)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~ 299 (356)
...............++++.|+++..+++.+.++|..+|.|.
T Consensus 328 -----~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 328 -----AARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred -----ccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 000001111223556899999999999999999999998764
No 28
>KOG0146|consensus
Probab=99.94 E-value=4.5e-27 Score=188.12 Aligned_cols=243 Identities=33% Similarity=0.506 Sum_probs=179.5
Q ss_pred CeEEEEEecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEE
Q psy9313 95 NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174 (356)
Q Consensus 95 g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 174 (356)
+|.|.|+.+......-..++|||+-|.+.-.|+|++.+|..||.|.++.+++..+. .+||+|||
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg----------------~sKGCAFV 65 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDG----------------NSKGCAFV 65 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCC----------------CCCCceEE
Confidence 57888888888877778999999999999999999999999999999999988755 78999999
Q ss_pred EeCCHHHHHHHHHHhcC-CCcCCCcccEEEEEccChhhhhHHHhhhhHHHHH-------------------------HHH
Q psy9313 175 RFNQHIEAEHAMQELNG-TIPEGASEPITVKFANSPAGRAKALAANLNAQAA-------------------------AMR 228 (356)
Q Consensus 175 ~f~~~~~a~~a~~~~~~-~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~ 228 (356)
.|.+..+|+.||..++| ..+.|....+.|++++....+.....+....+.. ...
T Consensus 66 Kf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~a 145 (371)
T KOG0146|consen 66 KFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLA 145 (371)
T ss_pred EeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHH
Confidence 99999999999999998 5678888899999998866654332221111110 000
Q ss_pred H----Hhhhh-----------------cccCCCCcccc-----ccc----------------c-----------------
Q psy9313 229 H----FAAAM-----------------RHFGNPLHHSA-----RFK----------------F----------------- 249 (356)
Q Consensus 229 ~----~~~~~-----------------~~~~~~~~~~~-----~~~----------------~----------------- 249 (356)
. ++.++ .....|..... ... +
T Consensus 146 t~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy 225 (371)
T KOG0146|consen 146 TVAGPYLSPMAAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVY 225 (371)
T ss_pred hhcccccChhhhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHh
Confidence 0 00000 00000000000 000 0
Q ss_pred ----------Cccccccc---------------------cCCCC-CC------CCCCCCCcEEEEecCCCCCcHHHHHHh
Q psy9313 250 ----------APLTADLL---------------------NNSML-PP------KSLHGSGWCIFVYNLAPETEDNVLWQL 291 (356)
Q Consensus 250 ----------~~~~~~~~---------------------~~~~~-~~------~~~~~~~~~l~V~nlp~~~t~~~L~~~ 291 (356)
++.-.+.. ..... ++ ......+|.|||..||-+..+.+|.+.
T Consensus 226 ~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQm 305 (371)
T KOG0146|consen 226 ANGLHPYPAQSPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQM 305 (371)
T ss_pred hcCCccCCCCCccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHH
Confidence 00000000 00000 00 011237899999999999999999999
Q ss_pred hcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCCC
Q psy9313 292 FGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKPL 353 (356)
Q Consensus 292 f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~~ 353 (356)
|-+||.|.+.++..|+-|+.++.|+||.|+|+.+|+.|+..|||+.|+-++|+|.++++|..
T Consensus 306 F~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 306 FLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 99999999999999999999999999999999999999999999999999999999998863
No 29
>KOG0145|consensus
Probab=99.94 E-value=1.7e-26 Score=184.19 Aligned_cols=169 Identities=30% Similarity=0.484 Sum_probs=153.0
Q ss_pred cccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
...+|.|.-||..+|++|++.+|...|+|++|++++|+.++ .+.||+||.|-++++|++|+..++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitG---------------qSLGYGFVNYv~p~DAe~AintlN 104 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITG---------------QSLGYGFVNYVRPKDAEKAINTLN 104 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccc---------------cccccceeeecChHHHHHHHhhhc
Confidence 45679999999999999999999999999999999998764 689999999999999999999999
Q ss_pred CCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCC
Q psy9313 191 GTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGS 270 (356)
Q Consensus 191 ~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (356)
|..+.. ..|+|.++.+..... .
T Consensus 105 GLrLQ~--KTIKVSyARPSs~~I--------------------------------------------------------k 126 (360)
T KOG0145|consen 105 GLRLQN--KTIKVSYARPSSDSI--------------------------------------------------------K 126 (360)
T ss_pred ceeecc--ceEEEEeccCChhhh--------------------------------------------------------c
Confidence 999999 889999987644322 2
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC--eeEEEEEe
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD--RLLQVSFK 348 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g--r~l~v~~a 348 (356)
...|||.+||..+|+.+|.++|++||.|..-+|..|..+|.++|.+||.|+..++|..|+..|||..-.| ..|.|.||
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 2359999999999999999999999999988999999999999999999999999999999999988766 68999999
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
..+.
T Consensus 207 nnPs 210 (360)
T KOG0145|consen 207 NNPS 210 (360)
T ss_pred CCcc
Confidence 8765
No 30
>KOG0131|consensus
Probab=99.94 E-value=1.2e-26 Score=175.42 Aligned_cols=173 Identities=32% Similarity=0.511 Sum_probs=152.6
Q ss_pred cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy9313 109 AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188 (356)
Q Consensus 109 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 188 (356)
.....+|||+||+..++++.|+++|-+.|+|.++.++++..+. ..+||||++|.++++|+-|++-
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~---------------~~qGygF~Ef~~eedadYAiki 70 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ---------------KHQGYGFAEFRTEEDADYAIKI 70 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc---------------cccceeEEEEechhhhHHHHHH
Confidence 3456789999999999999999999999999999999998774 3799999999999999999999
Q ss_pred hcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCC
Q psy9313 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLH 268 (356)
Q Consensus 189 ~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (356)
|+...+.| ++|++..+...... .
T Consensus 71 ln~VkLYg--rpIrv~kas~~~~n-------------------------------------------------------l 93 (203)
T KOG0131|consen 71 LNMVKLYG--RPIRVNKASAHQKN-------------------------------------------------------L 93 (203)
T ss_pred HHHHHhcC--ceeEEEeccccccc-------------------------------------------------------c
Confidence 99999999 89999887621100 0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeE-EEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQN-VKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+..++|+||.+.+++.-|.+.|+.||.+.. -+|+++++||.++|+|||.|++.+.+.+|+..|||..+.++.++|+|
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 02236999999999999999999999998765 48999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
+..+..
T Consensus 174 a~k~~~ 179 (203)
T KOG0131|consen 174 AFKKDT 179 (203)
T ss_pred EEecCC
Confidence 987653
No 31
>KOG4212|consensus
Probab=99.94 E-value=1.5e-24 Score=185.05 Aligned_cols=154 Identities=19% Similarity=0.360 Sum_probs=133.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhc-cCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSS-VGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~-~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
.+.+||.|||+++...+|+++|.. .|.|+.|.++.|. .|+.+|||.|+|+++|.+++|++.||.+.+.||+|.|+-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 455999999999999999999976 6899999999996 69999999999999999999999999999999999987653
Q ss_pred CCcc----------------------------------------------------------------------------
Q psy9313 105 PSSE---------------------------------------------------------------------------- 108 (356)
Q Consensus 105 ~~~~---------------------------------------------------------------------------- 108 (356)
....
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 2100
Q ss_pred ---------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCH
Q psy9313 109 ---------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQH 179 (356)
Q Consensus 109 ---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 179 (356)
.....++||.||.+.+....|++.|.-.|.|..+.+-.++.. .++|+|.++|..+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG----------------~s~G~~vi~y~hp 266 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG----------------NSRGFAVIEYDHP 266 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc----------------ccCCeeEEEecch
Confidence 112235999999999999999999999999999998888766 5789999999999
Q ss_pred HHHHHHHHHhcCCCcCC
Q psy9313 180 IEAEHAMQELNGTIPEG 196 (356)
Q Consensus 180 ~~a~~a~~~~~~~~~~~ 196 (356)
-+|-.||..+++.-+..
T Consensus 267 veavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 267 VEAVQAISMLDRQGLFD 283 (608)
T ss_pred HHHHHHHHhhccCCCcc
Confidence 99999999888654444
No 32
>KOG0127|consensus
Probab=99.94 E-value=7.7e-26 Score=197.94 Aligned_cols=193 Identities=25% Similarity=0.366 Sum_probs=156.3
Q ss_pred ccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy9313 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191 (356)
Q Consensus 112 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 191 (356)
..+|||++||++++.++|.++|+.+|+|..+.++.+..++. ++||+||+|.-.+++++|+....+
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~---------------~RGfgfVtFam~ED~qrA~~e~~~ 69 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSE---------------KRGFGFVTFAMEEDVQRALAETEQ 69 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCccc---------------ccCccceeeehHhHHHHHHHHhhc
Confidence 37899999999999999999999999999999999887754 899999999999999999999999
Q ss_pred CCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCC
Q psy9313 192 TIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSG 271 (356)
Q Consensus 192 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (356)
..+.| +.+.+..+..+........... .....+.............+.
T Consensus 70 ~kf~G--r~l~v~~A~~R~r~e~~~~~e~------------------------------~~veK~~~q~~~~k~~v~~~k 117 (678)
T KOG0127|consen 70 SKFEG--RILNVDPAKKRARSEEVEKGEN------------------------------KAVEKPIEQKRPTKAKVDLPK 117 (678)
T ss_pred Ccccc--eecccccccccccchhcccccc------------------------------hhhhcccccCCcchhhccCcc
Confidence 99999 7788887766543321000000 000000011111122233457
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCC
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~ 351 (356)
+.|+|+|||+.+...+|+.+|+.||.|..|.|++.++. +-+|||||.|....+|..|++.+||..|+||.|-|+||-++
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-CccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 89999999999999999999999999999999988765 44599999999999999999999999999999999999887
Q ss_pred C
Q psy9313 352 P 352 (356)
Q Consensus 352 ~ 352 (356)
.
T Consensus 197 d 197 (678)
T KOG0127|consen 197 D 197 (678)
T ss_pred c
Confidence 5
No 33
>KOG1190|consensus
Probab=99.94 E-value=2.9e-25 Score=187.83 Aligned_cols=295 Identities=19% Similarity=0.277 Sum_probs=208.7
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc--eeCCeEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL--KLQNKSI 98 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--~~~g~~l 98 (356)
....++..|++||||.+++|.||..++..||+|..+.+.+.+. .||++|.+++.|...+..+... .+.|+.|
T Consensus 23 ~~~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~ 96 (492)
T KOG1190|consen 23 SMAEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPI 96 (492)
T ss_pred cccCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcce
Confidence 4456899999999999999999999999999999999887653 8999999999999865443332 3678888
Q ss_pred EEEecCCC------------------------------cc--cc--------cccceEEcCCCCCCCHHHHHHhhcccCC
Q psy9313 99 KVSYARPS------------------------------SE--AI--------KRANLYVSGLPKHMTQEDLENLFRPYGT 138 (356)
Q Consensus 99 ~v~~~~~~------------------------------~~--~~--------~~~~l~v~nl~~~~t~~~l~~~f~~~g~ 138 (356)
-|.++.-. .. .. .--.++|.|+-+.++.+-|.++|++||.
T Consensus 97 yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~ 176 (492)
T KOG1190|consen 97 YIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF 176 (492)
T ss_pred eehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce
Confidence 88776310 00 00 1114788999999999999999999999
Q ss_pred eEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhh
Q psy9313 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAA 218 (356)
Q Consensus 139 i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~ 218 (356)
|..|.-.... ..-.|.|+|.+.+.|+.|-..|+|+.|...+..+++.++.......+..
T Consensus 177 VlKIiTF~Kn-------------------n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKyn-- 235 (492)
T KOG1190|consen 177 VLKIITFTKN-------------------NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYN-- 235 (492)
T ss_pred eEEEEEEecc-------------------cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeecc--
Confidence 9876654432 3455899999999999999999999998888899988876532221111
Q ss_pred hhHHHHHHHHHHhhhhcccCC--C------------Cccccc-cccCccccccccCCCCCCCCCCCCCcEEEEecCC-CC
Q psy9313 219 NLNAQAAAMRHFAAAMRHFGN--P------------LHHSAR-FKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLA-PE 282 (356)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp-~~ 282 (356)
+..++.+..+.-+.+. | .+.... ....+.......... ........+++|.|.|+- +.
T Consensus 236 -----ndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~-~~~~~~~~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 236 -----NDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAAD-GKIESPSANVVLLVSNLNEEA 309 (492)
T ss_pred -----ccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccc-cccccCCCceEEEEecCchhc
Confidence 1111111111111110 0 000000 000000000000000 011111126889999885 78
Q ss_pred CcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCCC
Q psy9313 283 TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKPL 353 (356)
Q Consensus 283 ~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~~ 353 (356)
+|.+.|..+|+-||.|.+|+|++.. +..|.|+|.+...|+-|++.|+|..|.|++|+|.++++...
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 9999999999999999999999985 35799999999999999999999999999999999998764
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=3.4e-25 Score=209.40 Aligned_cols=192 Identities=20% Similarity=0.279 Sum_probs=141.8
Q ss_pred cccccceEEcCCCCCCCHHHHHHhhccc------------CCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEe
Q psy9313 109 AIKRANLYVSGLPKHMTQEDLENLFRPY------------GTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRF 176 (356)
Q Consensus 109 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~------------g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f 176 (356)
....++|||+|||+.+|+++|+++|..+ +.|..+.+. ..+|||||+|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---------------------~~kg~afVeF 230 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---------------------KEKNFAFLEF 230 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---------------------CCCCEEEEEe
Confidence 3456789999999999999999999975 234444442 2479999999
Q ss_pred CCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCcccccc
Q psy9313 177 NQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADL 256 (356)
Q Consensus 177 ~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (356)
.+.++|..||. |+|..+.| .+|.+.............. .+........ ...
T Consensus 231 ~~~e~A~~Al~-l~g~~~~g--~~l~v~r~~~~~~~~~~~~---------------------~~~~~~~~~~-----~~~ 281 (509)
T TIGR01642 231 RTVEEATFAMA-LDSIIYSN--VFLKIRRPHDYIPVPQITP---------------------EVSQKNPDDN-----AKN 281 (509)
T ss_pred CCHHHHhhhhc-CCCeEeeC--ceeEecCccccCCccccCC---------------------CCCCCCCccc-----ccc
Confidence 99999999995 99999998 7777754332210000000 0000000000 000
Q ss_pred ccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCc
Q psy9313 257 LNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY 336 (356)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 336 (356)
...............+|||+|||+.+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||.
T Consensus 282 -~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~ 360 (509)
T TIGR01642 282 -VEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGK 360 (509)
T ss_pred -cccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCC
Confidence 0000011112235678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCeeEEEEEecCC
Q psy9313 337 ALGDRLLQVSFKTHK 351 (356)
Q Consensus 337 ~l~gr~l~v~~a~~~ 351 (356)
.|.|+.|.|.+|...
T Consensus 361 ~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 361 DTGDNKLHVQRACVG 375 (509)
T ss_pred EECCeEEEEEECccC
Confidence 999999999998754
No 35
>KOG0131|consensus
Probab=99.93 E-value=1.9e-25 Score=169.04 Aligned_cols=169 Identities=30% Similarity=0.482 Sum_probs=149.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
...||||+||+..++++-|+++|-+.|+|.++.+++++-+...+||||++|.++++|.-|++.||...+.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCcc-cccccceEEcCCCCCCCHHHHHHhhcccCCeEEE-EEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHH
Q psy9313 105 PSSE-AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS-RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEA 182 (356)
Q Consensus 105 ~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v-~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a 182 (356)
.... ..-+.++||+||.+.+++..|.+.|+.||.+..- ++.++..++ .+++++||-|.+.+.+
T Consensus 88 ~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg---------------~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 88 AHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTG---------------NPKGFGFINYASFEAS 152 (203)
T ss_pred cccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCC---------------CCCCCeEEechhHHHH
Confidence 3322 2335689999999999999999999999988753 455665543 5789999999999999
Q ss_pred HHHHHHhcCCCcCCCcccEEEEEccChh
Q psy9313 183 EHAMQELNGTIPEGASEPITVKFANSPA 210 (356)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~i~v~~~~~~~ 210 (356)
.+|+..++|..+.. +++.+.++....
T Consensus 153 d~ai~s~ngq~l~n--r~itv~ya~k~~ 178 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCN--RPITVSYAFKKD 178 (203)
T ss_pred HHHHHHhccchhcC--CceEEEEEEecC
Confidence 99999999999999 778887776543
No 36
>KOG0110|consensus
Probab=99.92 E-value=2e-24 Score=195.02 Aligned_cols=278 Identities=25% Similarity=0.320 Sum_probs=194.2
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
+.-..+.+|||+|||+.++++||+++| |||.|...+.|.+|...++|+.+.|+.|+|
T Consensus 222 e~i~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhv 278 (725)
T KOG0110|consen 222 EDISETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHV 278 (725)
T ss_pred hHHHhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeee
Confidence 455678899999999999999999999 899999999999999999999999999998
Q ss_pred EecCCCccc-----------------------------------------------------------------------
Q psy9313 101 SYARPSSEA----------------------------------------------------------------------- 109 (356)
Q Consensus 101 ~~~~~~~~~----------------------------------------------------------------------- 109 (356)
....+.+..
T Consensus 279 lp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~et 358 (725)
T KOG0110|consen 279 LPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGET 358 (725)
T ss_pred cCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHh
Confidence 776432110
Q ss_pred ------------------------ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCC
Q psy9313 110 ------------------------IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIP 165 (356)
Q Consensus 110 ------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~ 165 (356)
...+-++++|||..+..+++...|..||+|..+.++..
T Consensus 359 r~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~------------------ 420 (725)
T KOG0110|consen 359 RVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG------------------ 420 (725)
T ss_pred hhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecCcc------------------
Confidence 01123899999999999999999999999999866522
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCcc-c
Q psy9313 166 QISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHH-S 244 (356)
Q Consensus 166 ~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 244 (356)
...|+|+|.+..+|..|+..+....+.. .++.+.++........+............ . ...+... .
T Consensus 421 ---G~~aiv~fl~p~eAr~Afrklaysr~k~--~plyle~aP~dvf~~~pka~~~~~e~~~~-~-------ee~~~Er~s 487 (725)
T KOG0110|consen 421 ---GTGAIVEFLNPLEARKAFRKLAYSRFKS--APLYLEWAPEDVFTEDPKADDLSAESRSK-M-------EENPSERVS 487 (725)
T ss_pred ---cceeeeeecCccchHHHHHHhchhhhcc--CccccccChhhhccCCccccccccccccc-c-------ccCcceecc
Confidence 3459999999999999999998877766 56666655433322110000000000000 0 0000000 0
Q ss_pred cccccCccccccc-cCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCC---CCcceEEEEEE
Q psy9313 245 ARFKFAPLTADLL-NNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT---YKCKGFGFVCM 320 (356)
Q Consensus 245 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f 320 (356)
..........++. ..+.......-...++|||.|++++++.++|..+|.+.|.|.++.|...++. -.|.|||||+|
T Consensus 488 ~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF 567 (725)
T KOG0110|consen 488 AEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEF 567 (725)
T ss_pred cccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEe
Confidence 0000000000000 0000000011112233999999999999999999999999999998876543 13569999999
Q ss_pred ccHHHHHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 321 TNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 321 ~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
.+.++|+.|++.|+|..|+|+.|.|.++.+++
T Consensus 568 ~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~ 599 (725)
T KOG0110|consen 568 AKPESAQAALKALQGTVLDGHKLELKISENKP 599 (725)
T ss_pred cCHHHHHHHHHHhcCceecCceEEEEeccCcc
Confidence 99999999999999999999999999998443
No 37
>KOG0117|consensus
Probab=99.91 E-value=2.1e-23 Score=178.68 Aligned_cols=169 Identities=30% Similarity=0.461 Sum_probs=145.5
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCC-ceeEEEEecCCC-CccceEEEEEecCHHHHHHHHHHhC-C-ceeCCeE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGE-VESCKLIRDKTT-AQSLGYGFVNYYRTEDAERAIIELN-G-LKLQNKS 97 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~-i~~i~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~-g-~~~~g~~ 97 (356)
....+|+|||+|||..+++++|++.+++.++ |++|.+.....+ .++||||||+|.+...|..|.+.|- | ..+.|..
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 4567999999999999999999999999985 677777665433 4799999999999999999987664 3 3579999
Q ss_pred EEEEecCCCcccccc-----cceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEE
Q psy9313 98 IKVSYARPSSEAIKR-----ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172 (356)
Q Consensus 98 l~v~~~~~~~~~~~~-----~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~a 172 (356)
+.|.|+.|..+.... .-|||+||+.++|++.|+++|++||.|+.|+.+ +.||
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----------------------rDYa 296 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----------------------RDYA 296 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----------------------ccee
Confidence 999999987765433 248999999999999999999999999998875 4599
Q ss_pred EEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHH
Q psy9313 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKA 215 (356)
Q Consensus 173 fV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 215 (356)
||.|.+.++|-+|++.+++..+.| ..|.+.++++....+..
T Consensus 297 FVHf~eR~davkAm~~~ngkeldG--~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 297 FVHFAEREDAVKAMKETNGKELDG--SPIEVTLAKPVDKKKKE 337 (506)
T ss_pred EEeecchHHHHHHHHHhcCceecC--ceEEEEecCChhhhccc
Confidence 999999999999999999999999 88999999887655444
No 38
>KOG1456|consensus
Probab=99.90 E-value=7.5e-22 Score=165.41 Aligned_cols=305 Identities=16% Similarity=0.212 Sum_probs=219.5
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHH--HhCCceeC
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII--ELNGLKLQ 94 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~--~l~g~~~~ 94 (356)
..+.....++-.|+|++|-..++|.||.++++.||.|..+..++.+ +.|.|+|++.+.|+.++. .-+..++.
T Consensus 22 ~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~ 95 (494)
T KOG1456|consen 22 NADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIA 95 (494)
T ss_pred CCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCccccc
Confidence 3445667889999999999999999999999999999999887765 489999999999999884 23456788
Q ss_pred CeEEEEEecCCCc------ccccccc---eEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCC
Q psy9313 95 NKSIKVSYARPSS------EAIKRAN---LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIP 165 (356)
Q Consensus 95 g~~l~v~~~~~~~------~~~~~~~---l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~ 165 (356)
|+...+.++.... +.....+ +.|-|--+.+|.+-|.++....|+|..|.|.+.
T Consensus 96 gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk------------------ 157 (494)
T KOG1456|consen 96 GQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK------------------ 157 (494)
T ss_pred CchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec------------------
Confidence 8888888874321 2222222 345566788999999999999999999999875
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhh-hHHHHHHHH-HHhhhhc---ccCCC
Q psy9313 166 QISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAAN-LNAQAAAMR-HFAAAMR---HFGNP 240 (356)
Q Consensus 166 ~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~---~~~~~ 240 (356)
..-.|.|||.+.+.|++|-..|+|..|...+..++++++++........... ..-..+..+ .+..... ....|
T Consensus 158 --ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p 235 (494)
T KOG1456|consen 158 --NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQP 235 (494)
T ss_pred --cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCC
Confidence 3567999999999999999999999999888999999998754332211100 000000000 0000000 00000
Q ss_pred Ccc------------------------ccccccCccccccccCCCCCCCCCCCCCcEEEEecCC-CCCcHHHHHHhhcCC
Q psy9313 241 LHH------------------------SARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLA-PETEDNVLWQLFGPF 295 (356)
Q Consensus 241 ~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp-~~~t~~~L~~~f~~~ 295 (356)
... ....++.+...+ .....+.....+++.++|.+|. ..++-+.|..+|..|
T Consensus 236 ~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~---~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY 312 (494)
T KOG1456|consen 236 APLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD---GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY 312 (494)
T ss_pred CccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc---CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc
Confidence 000 000000000000 0112222344588999999998 577889999999999
Q ss_pred CceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCCCCC
Q psy9313 296 GAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKPLPP 355 (356)
Q Consensus 296 G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~~~~ 355 (356)
|.|.+|++++.. .|.|+|++.+..+.++|+..||+..+.|.+|.|.+++....-|
T Consensus 313 GNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v~~ 367 (494)
T KOG1456|consen 313 GNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFVSP 367 (494)
T ss_pred CceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccccccc
Confidence 999999999975 5789999999999999999999999999999999988765443
No 39
>KOG1190|consensus
Probab=99.90 E-value=9.8e-22 Score=166.62 Aligned_cols=281 Identities=19% Similarity=0.255 Sum_probs=207.6
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC--e
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN--K 96 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g--~ 96 (356)
..+.+..-.++.|.|+-..++-+-|.+.|++||.|..|.-+.+.. + -.|.|.|.+.+.|..|...|+|..|.+ +
T Consensus 143 ~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn-~---FQALvQy~d~~sAq~AK~aLdGqnIyngcC 218 (492)
T KOG1190|consen 143 NEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN-G---FQALVQYTDAVSAQAAKLALDGQNIYNGCC 218 (492)
T ss_pred ccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc-c---hhhhhhccchhhHHHHHHhccCCcccCcee
Confidence 334455666788999999999999999999999999998776542 2 379999999999999999999998733 5
Q ss_pred EEEEEecCCC---------------------c----------------------------------------ccc--ccc
Q psy9313 97 SIKVSYARPS---------------------S----------------------------------------EAI--KRA 113 (356)
Q Consensus 97 ~l~v~~~~~~---------------------~----------------------------------------~~~--~~~ 113 (356)
.|+|.+++-. - ... .+.
T Consensus 219 tLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~ 298 (492)
T KOG1190|consen 219 TLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANV 298 (492)
T ss_pred EEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCce
Confidence 7888877310 0 000 124
Q ss_pred ceEEcCCCC-CCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy9313 114 NLYVSGLPK-HMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192 (356)
Q Consensus 114 ~l~v~nl~~-~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 192 (356)
.|.|.||.. .+|.+.|..+|+-||.|..|+|+..+ +..|.|+|.+...|+.|+..|+|.
T Consensus 299 vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--------------------kd~ALIQmsd~~qAqLA~~hL~g~ 358 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--------------------KDNALIQMSDGQQAQLAMEHLEGH 358 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--------------------CcceeeeecchhHHHHHHHHhhcc
Confidence 577888854 59999999999999999999999874 578999999999999999999999
Q ss_pred CcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCC-CCCCCCCCC
Q psy9313 193 IPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSML-PPKSLHGSG 271 (356)
Q Consensus 193 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 271 (356)
.+.| ++|++.+++...-.-. ..+.+.....+. +....-..+..+.. .......++
T Consensus 359 ~l~g--k~lrvt~SKH~~vqlp---------------------~egq~d~glT~d-y~~spLhrfkkpgsKN~~ni~Pps 414 (492)
T KOG1190|consen 359 KLYG--KKLRVTLSKHTNVQLP---------------------REGQEDQGLTKD-YGNSPLHRFKKPGSKNYQNIFPPS 414 (492)
T ss_pred eecC--ceEEEeeccCccccCC---------------------CCCCcccccccc-CCCCchhhccCcccccccccCCch
Confidence 9999 7888887654321110 000000000000 00000111111111 122233577
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC-CeeEEEEEecC
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG-DRLLQVSFKTH 350 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-gr~l~v~~a~~ 350 (356)
.++.+.|+|.++++|+|+..|...|...+...... +.+.+|.+.+.+.++|..|+-.+|++.++ +..|+|+|+++
T Consensus 415 atlHlsnip~svsee~lk~~f~~~g~~vkafkff~----kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 415 ATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ----KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred hheeeccCCcccchhHHHHhhhcCCceEEeeeecC----CCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 89999999999999999999999987766554443 33679999999999999999999999998 46999999886
Q ss_pred C
Q psy9313 351 K 351 (356)
Q Consensus 351 ~ 351 (356)
.
T Consensus 491 ~ 491 (492)
T KOG1190|consen 491 T 491 (492)
T ss_pred c
Confidence 3
No 40
>KOG4211|consensus
Probab=99.90 E-value=5.6e-22 Score=172.39 Aligned_cols=300 Identities=18% Similarity=0.232 Sum_probs=196.9
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
.......|.+++||.++|++||.++|+..+ |+.+.+.+. +|+..|-|||+|.+++++++|+ +.+...+..+.|.|-
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEE
Confidence 345567899999999999999999999985 788776664 6999999999999999999999 568888888999998
Q ss_pred ecCCCcc-----------cccccceEEcCCCCCCCHHHHHHhhcccCCeEE-EEEecccccccccccccCCCCCCCCCcc
Q psy9313 102 YARPSSE-----------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT-SRILCDKMASENVRSFVSGTPEIPQISK 169 (356)
Q Consensus 102 ~~~~~~~-----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~-v~i~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (356)
.+.+... ......|.+++||+.||++||.++|+..-.+.. |.++.+... ++.
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rg----------------R~t 145 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRG----------------RPT 145 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCC----------------Ccc
Confidence 7743321 123456899999999999999999998865555 556666544 579
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhh-hHHHHHHHHH---------Hhhhhc----
Q psy9313 170 GIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAAN-LNAQAAAMRH---------FAAAMR---- 235 (356)
Q Consensus 170 g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~-~~~~~~~~~~---------~~~~~~---- 235 (356)
|.|||+|++.+.|+.|+.. +...|.. +-|.+-.+...........-. ....+..... +.....
T Consensus 146 GEAfVqF~sqe~ae~Al~r-hre~iGh--RYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~ 222 (510)
T KOG4211|consen 146 GEAFVQFESQESAEIALGR-HRENIGH--RYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRN 222 (510)
T ss_pred cceEEEecCHHHHHHHHHH-HHHhhcc--ceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCcc
Confidence 9999999999999999985 6666776 444444333221111110000 0000000000 000000
Q ss_pred --c---cC-C-------CCccc--cccccCccccccccCCCCC--------CCCCCCCCcEEEEecCCCCCcHHHHHHhh
Q psy9313 236 --H---FG-N-------PLHHS--ARFKFAPLTADLLNNSMLP--------PKSLHGSGWCIFVYNLAPETEDNVLWQLF 292 (356)
Q Consensus 236 --~---~~-~-------~~~~~--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~V~nlp~~~t~~~L~~~f 292 (356)
. .. . +.... .+................+ .......+-.+..+++|+..+..++..+|
T Consensus 223 ~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfF 302 (510)
T KOG4211|consen 223 ATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFF 302 (510)
T ss_pred ccccccccCCccccccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhc
Confidence 0 00 0 00000 0000000000000000000 00111123679999999999999999999
Q ss_pred cCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 293 GPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 293 ~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
+..-.+ .|.|-..+ +|+.+|-|+|+|.|.++|..|+. -++..+..+-+.+..
T Consensus 303 spl~p~-~v~i~ig~-dGr~TGEAdveF~t~edav~Ams-kd~anm~hrYVElFl 354 (510)
T KOG4211|consen 303 SPLNPY-RVHIEIGP-DGRATGEADVEFATGEDAVGAMG-KDGANMGHRYVELFL 354 (510)
T ss_pred CCCCce-eEEEEeCC-CCccCCcceeecccchhhHhhhc-cCCcccCcceeeecc
Confidence 997665 77777776 47889999999999999999998 477777777766544
No 41
>KOG0124|consensus
Probab=99.90 E-value=3e-23 Score=173.28 Aligned_cols=178 Identities=23% Similarity=0.421 Sum_probs=150.3
Q ss_pred cceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy9313 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192 (356)
Q Consensus 113 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 192 (356)
++|||+.+.+.+.|+-|+..|..||+|++|.+.+|+.+. ..+|||||+|+-++.|+.|++.|||.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~---------------kHKgFAFVEYEvPEaAqLAlEqMNg~ 178 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATG---------------KHKGFAFVEYEVPEAAQLALEQMNGQ 178 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccc---------------cccceEEEEEeCcHHHHHHHHHhccc
Confidence 579999999999999999999999999999999998775 48999999999999999999999999
Q ss_pred CcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCCc
Q psy9313 193 IPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGW 272 (356)
Q Consensus 193 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (356)
.+.| +.|+|.+.+.-.+.. +.-+....... .-.
T Consensus 179 mlGG--RNiKVgrPsNmpQAQ-piID~vqeeAk--------------------------------------------~fn 211 (544)
T KOG0124|consen 179 MLGG--RNIKVGRPSNMPQAQ-PIIDMVQEEAK--------------------------------------------KFN 211 (544)
T ss_pred cccC--ccccccCCCCCcccc-hHHHHHHHHHH--------------------------------------------hhh
Confidence 9999 667776543222111 11111111100 112
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
+|||..+..+.+++||+.+|+.||.|.+|.+-+++..+..+||+|++|.+..+-..|+..||-+.++|..|+|.-+-.+|
T Consensus 212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999998776655
No 42
>KOG0109|consensus
Probab=99.90 E-value=1.8e-23 Score=169.61 Aligned_cols=149 Identities=28% Similarity=0.523 Sum_probs=135.4
Q ss_pred cceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy9313 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192 (356)
Q Consensus 113 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 192 (356)
.+|||+|||..+++.+|+.+|++||+|.+|.|+ |.|+||..++...++.|+..|++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----------------------KNYgFVHiEdktaaedairNLhgY 59 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----------------------KNYGFVHIEDKTAAEDAIRNLHGY 59 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----------------------cccceEEeecccccHHHHhhcccc
Confidence 368999999999999999999999999999996 569999999999999999999999
Q ss_pred CcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCCc
Q psy9313 193 IPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGW 272 (356)
Q Consensus 193 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (356)
.++| ..|.|+-++.+. ..++
T Consensus 60 tLhg--~nInVeaSksKs----------------------------------------------------------k~st 79 (346)
T KOG0109|consen 60 TLHG--VNINVEASKSKS----------------------------------------------------------KAST 79 (346)
T ss_pred eecc--eEEEEEeccccC----------------------------------------------------------CCcc
Confidence 9999 677777654331 1345
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
+|+|+||.+.++.++|+..|++||+|..|.|+++ |+||.|+-.++|..|++.|+|..+.|++++|+.+.++-
T Consensus 80 kl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 80 KLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred ccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 7999999999999999999999999999999876 89999999999999999999999999999999998754
No 43
>KOG0109|consensus
Probab=99.89 E-value=7.5e-23 Score=166.05 Aligned_cols=147 Identities=29% Similarity=0.542 Sum_probs=135.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS 106 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 106 (356)
..|||+|||..+++.+|+.+|++||+|.+|.|+++ |+||-.+++..|..|++.|+|..|.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999986 8999999999999999999999999999999988876
Q ss_pred cccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHH
Q psy9313 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAM 186 (356)
Q Consensus 107 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 186 (356)
+....+++|+|+.+.++..|++..|.+||+|.++.|. ++|+||.|...++|..|+
T Consensus 75 --sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----------------------kdy~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 75 --SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----------------------KDYAFVHFDRAEDAVEAI 129 (346)
T ss_pred --CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----------------------cceeEEEEeeccchHHHH
Confidence 4557899999999999999999999999999999995 579999999999999999
Q ss_pred HHhcCCCcCCCcccEEEEEccC
Q psy9313 187 QELNGTIPEGASEPITVKFANS 208 (356)
Q Consensus 187 ~~~~~~~~~~~~~~i~v~~~~~ 208 (356)
..|++..+.| .++.|..+..
T Consensus 130 r~l~~~~~~g--k~m~vq~sts 149 (346)
T KOG0109|consen 130 RGLDNTEFQG--KRMHVQLSTS 149 (346)
T ss_pred hccccccccc--ceeeeeeecc
Confidence 9999999999 6666665443
No 44
>KOG0147|consensus
Probab=99.84 E-value=7.3e-21 Score=167.70 Aligned_cols=184 Identities=30% Similarity=0.517 Sum_probs=149.9
Q ss_pred cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy9313 109 AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188 (356)
Q Consensus 109 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 188 (356)
....+++|+--+....+..+|.++|+.+|.|.+|.++.+..+. .++|.|||+|-+.+.+..|+.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~---------------rskgi~Yvef~D~~sVp~aia- 239 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSR---------------RSKGIAYVEFCDEQSVPLAIA- 239 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccch---------------hhcceeEEEEecccchhhHhh-
Confidence 3445678888888889999999999999999999999998886 489999999999999999996
Q ss_pred hcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCC
Q psy9313 189 LNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLH 268 (356)
Q Consensus 189 ~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (356)
|.|..+.| .++.+......... .+. ..+........
T Consensus 240 LsGqrllg--~pv~vq~sEaeknr-~a~-----------------------------------------~s~a~~~k~~~ 275 (549)
T KOG0147|consen 240 LSGQRLLG--VPVIVQLSEAEKNR-AAN-----------------------------------------ASPALQGKGFT 275 (549)
T ss_pred hcCCcccC--ceeEecccHHHHHH-HHh-----------------------------------------ccccccccccc
Confidence 89999999 77777654322211 000 00000001111
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
++-..|||+||.+.+++++|+.+|++||.|..|.+++|.+||.++||+||+|.+.++|++|+..|||+.|.||.|+|...
T Consensus 276 ~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v 355 (549)
T KOG0147|consen 276 GPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVV 355 (549)
T ss_pred cchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEe
Confidence 12223899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
..+-
T Consensus 356 ~~r~ 359 (549)
T KOG0147|consen 356 TERV 359 (549)
T ss_pred eeec
Confidence 6543
No 45
>KOG4205|consensus
Probab=99.84 E-value=1.1e-20 Score=161.11 Aligned_cols=167 Identities=28% Similarity=0.491 Sum_probs=149.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
..++|+|++|+.+++++.|+++|++||.|.++.+++++.+++++||+||+|.+.+....++ ....+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceecc
Confidence 7899999999999999999999999999999999999999999999999999999999998 556778999999999988
Q ss_pred CCccccc------ccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCC
Q psy9313 105 PSSEAIK------RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQ 178 (356)
Q Consensus 105 ~~~~~~~------~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 178 (356)
+...... ..++||++||.+++++++++.|.+||.|..+.+..+..+. ..++|+||.|.+
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~---------------~~rgFgfv~~~~ 148 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTS---------------RPRGFGFVTFDS 148 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccc---------------ccccceeeEecc
Confidence 7665443 3389999999999999999999999999999999988775 489999999999
Q ss_pred HHHHHHHHHHhcCCCcCCCcccEEEEEccChh
Q psy9313 179 HIEAEHAMQELNGTIPEGASEPITVKFANSPA 210 (356)
Q Consensus 179 ~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~ 210 (356)
++++++++. ..-+.+.+ +.+.++.|.++.
T Consensus 149 e~sVdkv~~-~~f~~~~g--k~vevkrA~pk~ 177 (311)
T KOG4205|consen 149 EDSVDKVTL-QKFHDFNG--KKVEVKRAIPKE 177 (311)
T ss_pred ccccceecc-cceeeecC--ceeeEeeccchh
Confidence 999999987 46677788 778888776654
No 46
>KOG0120|consensus
Probab=99.82 E-value=4.8e-20 Score=164.73 Aligned_cols=280 Identities=20% Similarity=0.309 Sum_probs=204.1
Q ss_pred CCCCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhcc-----------C-CceeEEEEecCCCCccceEEEEEecCHHHH
Q psy9313 14 HRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSV-----------G-EVESCKLIRDKTTAQSLGYGFVNYYRTEDA 81 (356)
Q Consensus 14 ~~~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~-----------g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A 81 (356)
.....+++.......++++++|+.++++....+|..- | .+..+.+-. .+.+||++|.+.++|
T Consensus 163 ~~~~~~~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~------~~nfa~ie~~s~~~a 236 (500)
T KOG0120|consen 163 PTPPMDSQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL------EKNFAFIEFRSISEA 236 (500)
T ss_pred CCCccCcchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc------cccceeEEecCCCch
Confidence 4455666778899999999999999999999988764 2 244454433 345999999999999
Q ss_pred HHHHHHhCCceeCCeEEEEEecCCCc-----------------------ccccccceEEcCCCCCCCHHHHHHhhcccCC
Q psy9313 82 ERAIIELNGLKLQNKSIKVSYARPSS-----------------------EAIKRANLYVSGLPKHMTQEDLENLFRPYGT 138 (356)
Q Consensus 82 ~~a~~~l~g~~~~g~~l~v~~~~~~~-----------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~ 138 (356)
..|+ .+++..+.|+.+++....... ......+++|++||..+++.++.++...||+
T Consensus 237 t~~~-~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~ 315 (500)
T KOG0120|consen 237 TEAM-ALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP 315 (500)
T ss_pred hhhh-cccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc
Confidence 9999 889999999888775543110 0112346999999999999999999999999
Q ss_pred eEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhh
Q psy9313 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAA 218 (356)
Q Consensus 139 i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~ 218 (356)
+....+..+..+ |.++||||.+|.+......|+..++|..+.+ ..+.+..+-...........
T Consensus 316 lk~f~lv~d~~~---------------g~skg~af~ey~dpsvtd~A~agLnGm~lgd--~~lvvq~A~~g~~~~~~~~~ 378 (500)
T KOG0120|consen 316 LKAFRLVKDSAT---------------GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD--KKLVVQRAIVGASNANVNFN 378 (500)
T ss_pred chhheeeccccc---------------ccccceeeeeeeCCcchhhhhcccchhhhcC--ceeEeehhhccchhccccCC
Confidence 999999888654 3789999999999999999999999999999 66777665443322111110
Q ss_pred hhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCCcEEEEecC--CCCC--------cHHHH
Q psy9313 219 NLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNL--APET--------EDNVL 288 (356)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl--p~~~--------t~~~L 288 (356)
.... ... ......-.....+..+|.+.|+ |.+. --+++
T Consensus 379 ~~~~------------~~~--------------------~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdv 426 (500)
T KOG0120|consen 379 ISQS------------QVP--------------------GIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDV 426 (500)
T ss_pred cccc------------ccc--------------------cchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHH
Confidence 0000 000 0000000112224556677776 1111 11667
Q ss_pred HHhhcCCCceeEEEEeeC-CC--CCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 289 WQLFGPFGAVQNVKVVRD-PQ--TYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 289 ~~~f~~~G~v~~v~i~~~-~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.-+.+||.|..|.|+++ .. ..-..|..||+|.+.+++++|...|+|+.|.||.|...|--
T Consensus 427 r~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 427 RTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 777899999999999887 22 23346889999999999999999999999999999988853
No 47
>KOG0146|consensus
Probab=99.82 E-value=1.2e-19 Score=145.74 Aligned_cols=167 Identities=26% Similarity=0.525 Sum_probs=144.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCce-eCC--eEEEEE
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLK-LQN--KSIKVS 101 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g--~~l~v~ 101 (356)
..++|||+-|...-.|+|++.+|..||.+.++.+.+.. .|.++|||||.|.+..+|..|+..|+|.. +.| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999985 69999999999999999999999999864 444 578888
Q ss_pred ecCCCcc-------------------------------------------------------------------------
Q psy9313 102 YARPSSE------------------------------------------------------------------------- 108 (356)
Q Consensus 102 ~~~~~~~------------------------------------------------------------------------- 108 (356)
++...++
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 8722110
Q ss_pred --------------------------------------------------------------------------------
Q psy9313 109 -------------------------------------------------------------------------------- 108 (356)
Q Consensus 109 -------------------------------------------------------------------------------- 108 (356)
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence
Q ss_pred -------------------------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCC
Q psy9313 109 -------------------------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163 (356)
Q Consensus 109 -------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~ 163 (356)
..++++|||-.||....+.||.+.|-.||.|++.++..|..+.
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATN------------ 324 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATN------------ 324 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccc------------
Confidence 2344569999999999999999999999999999999988774
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEcc
Q psy9313 164 IPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207 (356)
Q Consensus 164 ~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~ 207 (356)
.+|.|+||.|.++.+|+.||+.|||..|..+..++.+++.+
T Consensus 325 ---QSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 325 ---QSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred ---cccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 58999999999999999999999999999965555555443
No 48
>KOG1456|consensus
Probab=99.81 E-value=2e-17 Score=139.05 Aligned_cols=280 Identities=20% Similarity=0.257 Sum_probs=198.5
Q ss_pred CCCCceEE--EcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCcee--CCeEE
Q psy9313 23 NEQNSNLI--VNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL--QNKSI 98 (356)
Q Consensus 23 ~~~~~~l~--v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~--~g~~l 98 (356)
..++..|. |-|--+.+|-+.|..++...|+|.+|.|++. +|. .|.|+|.+.+.|++|...|||..| .-++|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeE
Confidence 34444554 4454566899999999999999999999886 343 799999999999999999999876 44789
Q ss_pred EEEecCCCccc---------------------------------------------------------------------
Q psy9313 99 KVSYARPSSEA--------------------------------------------------------------------- 109 (356)
Q Consensus 99 ~v~~~~~~~~~--------------------------------------------------------------------- 109 (356)
+|++++|.+-.
T Consensus 192 KIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~ 271 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDG 271 (494)
T ss_pred EEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccc
Confidence 99999764210
Q ss_pred -------------ccccceEEcCCCCC-CCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEE
Q psy9313 110 -------------IKRANLYVSGLPKH-MTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVR 175 (356)
Q Consensus 110 -------------~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 175 (356)
..+.-+.|-+|... +.-+-|..+|-.||.|..|+.++. ..|.|.|+
T Consensus 272 ~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT--------------------k~gtamVe 331 (494)
T KOG1456|consen 272 YRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT--------------------KPGTAMVE 331 (494)
T ss_pred cccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec--------------------ccceeEEE
Confidence 01112788888766 677889999999999999999886 37899999
Q ss_pred eCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccc
Q psy9313 176 FNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTAD 255 (356)
Q Consensus 176 f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (356)
+.+..++++|+..|++..+.| .++.++.+........ ..+.-|.+..+-..++.+...
T Consensus 332 mgd~~aver~v~hLnn~~lfG--~kl~v~~SkQ~~v~~~--------------------~pflLpDgSpSfKdys~SkNn 389 (494)
T KOG1456|consen 332 MGDAYAVERAVTHLNNIPLFG--GKLNVCVSKQNFVSPV--------------------QPFLLPDGSPSFKDYSGSKNN 389 (494)
T ss_pred cCcHHHHHHHHHHhccCcccc--ceEEEeeccccccccC--------------------CceecCCCCcchhhccccccc
Confidence 999999999999999999988 6677766554321111 111111111111111111111
Q ss_pred ccc-CCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCc-eeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHh
Q psy9313 256 LLN-NSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGA-VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333 (356)
Q Consensus 256 ~~~-~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 333 (356)
-+. ..-........++++|...|.|..+||+.|..+|...+. ..++++...+.. + .--+.++|++.++|..|+..+
T Consensus 390 RFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp~kse-r-SssGllEfe~~s~Aveal~~~ 467 (494)
T KOG1456|consen 390 RFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFPLKSE-R-SSSGLLEFENKSDAVEALMKL 467 (494)
T ss_pred ccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeeccccc-c-cccceeeeehHHHHHHHHHHh
Confidence 111 111112233457889999999999999999999987653 356677655422 2 235899999999999999999
Q ss_pred CCcccCC------eeEEEEEecCC
Q psy9313 334 NGYALGD------RLLQVSFKTHK 351 (356)
Q Consensus 334 ~g~~l~g------r~l~v~~a~~~ 351 (356)
|...+.+ -.|++-|+.++
T Consensus 468 NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 468 NHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred ccccccCCCCCCCeeeeeeecccc
Confidence 9998886 35666666554
No 49
>KOG4206|consensus
Probab=99.81 E-value=9.2e-19 Score=138.46 Aligned_cols=159 Identities=27% Similarity=0.469 Sum_probs=138.5
Q ss_pred CCceEEEcCCCCCCCHHHHHH----HhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 25 QNSNLIVNYVPQTMTQEELQH----LFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~----~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
++.||||+||+..+..++|+. +|++||.|.+|...+ +.+.+|.|||.|.+.+.|..|++.|+|..+.|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 999999999998764 5789999999999999999999999999999999999
Q ss_pred EecCCCcc--------------------------------------------------cccccceEEcCCCCCCCHHHHH
Q psy9313 101 SYARPSSE--------------------------------------------------AIKRANLYVSGLPKHMTQEDLE 130 (356)
Q Consensus 101 ~~~~~~~~--------------------------------------------------~~~~~~l~v~nl~~~~t~~~l~ 130 (356)
.+++.++. ...+..+++.|||..++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99863321 1233468999999999999999
Q ss_pred HhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEcc
Q psy9313 131 NLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207 (356)
Q Consensus 131 ~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~ 207 (356)
.+|.+|.--..+.++.. -++.|||+|.+...|..|.+.+.+..+.- ...+.+.+++
T Consensus 165 ~lf~qf~g~keir~i~~--------------------~~~iAfve~~~d~~a~~a~~~lq~~~it~-~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP--------------------RSGIAFVEFLSDRQASAAQQALQGFKITK-KNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccC--------------------CCceeEEecchhhhhHHHhhhhccceecc-CceEEecccC
Confidence 99999999999988765 47999999999999999999999988774 4778777654
No 50
>KOG0105|consensus
Probab=99.81 E-value=1.5e-18 Score=131.97 Aligned_cols=153 Identities=22% Similarity=0.391 Sum_probs=130.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
.+.+++|||+|||.++-+.+|.++|.+||.|.+|.+.... ..-.||||+|++..+|..|+...+|..+.|..|+|++
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEe
Confidence 4568999999999999999999999999999999885543 2346999999999999999999999999999999999
Q ss_pred cCCCcc--------------------------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEeccccccccccc
Q psy9313 103 ARPSSE--------------------------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRS 156 (356)
Q Consensus 103 ~~~~~~--------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~ 156 (356)
+..... ......|.|.+||.+-+.++|++++..-|.|-...+.++
T Consensus 80 prggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--------- 150 (241)
T KOG0105|consen 80 PRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--------- 150 (241)
T ss_pred ccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---------
Confidence 864321 122346999999999999999999999999988777655
Q ss_pred ccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCccc
Q psy9313 157 FVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200 (356)
Q Consensus 157 ~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~ 200 (356)
+.+.|+|...++-+-|+..++...+..-+..
T Consensus 151 -------------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~ 181 (241)
T KOG0105|consen 151 -------------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGET 181 (241)
T ss_pred -------------cceeeeeeehhhHHHHHHhhccccccCcCcE
Confidence 6899999999999999999988766543333
No 51
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.81 E-value=6.2e-19 Score=135.93 Aligned_cols=86 Identities=30% Similarity=0.453 Sum_probs=81.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
..+++|||+|||+.+++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|+.|++.||+..|+|+.|+|.|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy9313 349 THKPLP 354 (356)
Q Consensus 349 ~~~~~~ 354 (356)
+.++.+
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 877643
No 52
>KOG4206|consensus
Probab=99.80 E-value=1.1e-18 Score=137.95 Aligned_cols=205 Identities=21% Similarity=0.406 Sum_probs=146.9
Q ss_pred ccceEEcCCCCCCCHHHHHH----hhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy9313 112 RANLYVSGLPKHMTQEDLEN----LFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187 (356)
Q Consensus 112 ~~~l~v~nl~~~~t~~~l~~----~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 187 (356)
..+|||.||+..+..++|+. +|++||.|.+|...... ..+|.|||.|.+.+.|..|+.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~------------------KmRGQA~VvFk~~~~As~A~r 70 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP------------------KMRGQAFVVFKETEAASAALR 70 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC------------------CccCceEEEecChhHHHHHHH
Confidence 44999999999999999888 99999999999887654 579999999999999999999
Q ss_pred HhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCC--C
Q psy9313 188 ELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP--K 265 (356)
Q Consensus 188 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 265 (356)
.|+|..+.| .++++.++........................... ....+..... .+.. .......++ .
T Consensus 71 ~l~gfpFyg--K~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~--~~~~~~~~ng----~~~~--~~~~~~p~p~~~ 140 (221)
T KOG4206|consen 71 ALQGFPFYG--KPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILA--RIKQPLDTNG----HFYN--MNRMNLPPPFLA 140 (221)
T ss_pred HhcCCcccC--chhheecccCccchhhccCceeccccCcccccccc--ccCCcccccc----cccc--cccccCCCCccc
Confidence 999999999 88999888776654332110000000000000000 0000000000 0000 000000011 2
Q ss_pred CCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC-CeeEE
Q psy9313 266 SLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG-DRLLQ 344 (356)
Q Consensus 266 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-gr~l~ 344 (356)
....++.++++.|||.+++.+.|..+|.+|.....++++... .+.|||+|.+...|..|...++|..+- ...++
T Consensus 141 ~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~ 215 (221)
T KOG4206|consen 141 QMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQ 215 (221)
T ss_pred cCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEE
Confidence 234577899999999999999999999999999999998864 679999999999999999999999888 88899
Q ss_pred EEEec
Q psy9313 345 VSFKT 349 (356)
Q Consensus 345 v~~a~ 349 (356)
|.|++
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 98875
No 53
>KOG4205|consensus
Probab=99.80 E-value=2.2e-19 Score=153.16 Aligned_cols=174 Identities=24% Similarity=0.365 Sum_probs=148.1
Q ss_pred cccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
...++||++|++.++++.|++.|.+||+|.++.+..+..++ ++++|+||+|.+.+.+.+++.. .
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~---------------rsrgFgfv~f~~~~~v~~vl~~-~ 68 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTG---------------RSRGFGFVTFATPEGVDAVLNA-R 68 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCC---------------CcccccceecCCCcchheeecc-c
Confidence 57889999999999999999999999999999999998774 5899999999999999999873 5
Q ss_pred CCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCC
Q psy9313 191 GTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGS 270 (356)
Q Consensus 191 ~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (356)
...+.+ +.+.++.+.++........ ...
T Consensus 69 ~h~~dg--r~ve~k~av~r~~~~~~~~--------------------------------------------------~~~ 96 (311)
T KOG4205|consen 69 THKLDG--RSVEPKRAVSREDQTKVGR--------------------------------------------------HLR 96 (311)
T ss_pred ccccCC--ccccceeccCccccccccc--------------------------------------------------ccc
Confidence 667777 6666666654432211110 013
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
...|+|++||..+++++++++|.+||.|..+.++.|..+.+++||+||.|++.+++.+++. .+-+.|.|+.+.|.-|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 4579999999999999999999999999999999999999999999999999999999887 678889999999999988
Q ss_pred CCC
Q psy9313 351 KPL 353 (356)
Q Consensus 351 ~~~ 353 (356)
+..
T Consensus 176 k~~ 178 (311)
T KOG4205|consen 176 KEV 178 (311)
T ss_pred hhh
Confidence 753
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=5.8e-18 Score=130.54 Aligned_cols=88 Identities=27% Similarity=0.463 Sum_probs=82.2
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
.....+++|||+|||..++|++|+++|++||.|.++.++.++.++.++|||||+|.+.++|+.|++.||+..|.|+.|+|
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V 108 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRV 108 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.|+.+...
T Consensus 109 ~~a~~~~~ 116 (144)
T PLN03134 109 NPANDRPS 116 (144)
T ss_pred EeCCcCCC
Confidence 99976543
No 55
>KOG1365|consensus
Probab=99.76 E-value=4.2e-18 Score=143.58 Aligned_cols=282 Identities=16% Similarity=0.190 Sum_probs=190.2
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
......+..|..++||..-+..+|..+|+......-....-....|++.|+|.|.|.+.+.-.-|+ +.+.+.+.++.|.
T Consensus 54 ~~~~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryie 132 (508)
T KOG1365|consen 54 NHSADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIE 132 (508)
T ss_pred ccccCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh-HhhhhhccCCcee
Confidence 345667788999999999999999999988743333333333456889999999999999999999 5588888899999
Q ss_pred EEecCCCcc----------------cccccceEEcCCCCCCCHHHHHHhhccc----CCeEEEEEecccccccccccccC
Q psy9313 100 VSYARPSSE----------------AIKRANLYVSGLPKHMTQEDLENLFRPY----GTIITSRILCDKMASENVRSFVS 159 (356)
Q Consensus 100 v~~~~~~~~----------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~----g~i~~v~i~~~~~~~~~~~~~~~ 159 (356)
|--+.+..- ....--|.+++||+++++.++.++|.+- |..+.+..++..++
T Consensus 133 vYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdg--------- 203 (508)
T KOG1365|consen 133 VYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDG--------- 203 (508)
T ss_pred eeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCC---------
Confidence 887754321 1123347888999999999999999743 24445666655444
Q ss_pred CCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhh-hcc-c
Q psy9313 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAA-MRH-F 237 (356)
Q Consensus 160 ~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~ 237 (356)
+..|-|||.|..+++|+.|+.+ +...+.- +-|.+-++. ...-.......... ... .
T Consensus 204 -------rpTGdAFvlfa~ee~aq~aL~k-hrq~iGq--RYIElFRST------------aaEvqqvlnr~~s~pLi~~~ 261 (508)
T KOG1365|consen 204 -------RPTGDAFVLFACEEDAQFALRK-HRQNIGQ--RYIELFRST------------AAEVQQVLNREVSEPLIPGL 261 (508)
T ss_pred -------CcccceEEEecCHHHHHHHHHH-HHHHHhH--HHHHHHHHh------------HHHHHHHHHhhccccccCCC
Confidence 6799999999999999999985 3333333 112111100 00000000000000 000 0
Q ss_pred CCCCccccccccCccccccccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCc-e--eEEEEeeCCCCCCcce
Q psy9313 238 GNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGA-V--QNVKVVRDPQTYKCKG 314 (356)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v--~~v~i~~~~~~~~~~g 314 (356)
..|......... ........+|.+++||++.+.+||.++|..|.. | ..|.++.+. .|++.|
T Consensus 262 ~sp~~p~~p~~~---------------~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSG 325 (508)
T KOG1365|consen 262 TSPLLPGGPARL---------------VPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSG 325 (508)
T ss_pred CCCCCCCCcccc---------------CCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcCh
Confidence 000000000000 001112457999999999999999999998863 3 347777765 478899
Q ss_pred EEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 315 FGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 315 ~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.|||+|.+.++|..|....|++.+.+|.|.|.-+.
T Consensus 326 eAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 326 EAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 99999999999999999999988889999887653
No 56
>KOG0105|consensus
Probab=99.76 E-value=1.2e-16 Score=121.66 Aligned_cols=181 Identities=19% Similarity=0.251 Sum_probs=134.0
Q ss_pred ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy9313 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189 (356)
Q Consensus 110 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 189 (356)
...++|||+|||.++-+.+|.++|-+||.|..|.+.... ....||||+|++..+|+.||..-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~------------------g~ppfafVeFEd~RDAeDAiygR 65 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP------------------GPPPFAFVEFEDPRDAEDAIYGR 65 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC------------------CCCCeeEEEecCccchhhhhhcc
Confidence 346789999999999999999999999999999886543 34689999999999999999999
Q ss_pred cCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCC
Q psy9313 190 NGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHG 269 (356)
Q Consensus 190 ~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (356)
+|..+.+ ..++|+++........... .++.....--............
T Consensus 66 dGYdydg--~rLRVEfprggr~s~~~~G------------------------------~y~gggrgGgg~gg~rgppsrr 113 (241)
T KOG0105|consen 66 DGYDYDG--CRLRVEFPRGGRSSSDRRG------------------------------SYSGGGRGGGGGGGRRGPPSRR 113 (241)
T ss_pred cccccCc--ceEEEEeccCCCccccccc------------------------------ccCCCCCCCCCCCcccCCcccc
Confidence 9999999 7899998765321100000 0000000000000000011122
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC--CeeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG--DRLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~--gr~l~v~~ 347 (356)
....|.|.+||.+-+++||+++..+.|.|....+.+| |.+.|+|...++-..|++.|....+. |....+..
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv 186 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRV 186 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEe
Confidence 5568999999999999999999999999999998887 57999999999999999999876544 55544443
No 57
>KOG1548|consensus
Probab=99.71 E-value=3.6e-16 Score=130.53 Aligned_cols=194 Identities=20% Similarity=0.215 Sum_probs=138.2
Q ss_pred cccceEEcCCCCCCCHHHHHHhhcccCCeEE--------EEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHH
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIIT--------SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEA 182 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~--------v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a 182 (356)
.+..|||.|||.++|.+++.++|+++|-|.. |++..+..+ ..+|-|.+.|-..+++
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G----------------~lKGDaLc~y~K~ESV 196 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQG----------------KLKGDALCCYIKRESV 196 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCC----------------CccCceEEEeecccHH
Confidence 4557999999999999999999999997763 555555433 6899999999999999
Q ss_pred HHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhH------HHHHHHHHHhhhhcccCCCCccccccccCcccccc
Q psy9313 183 EHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLN------AQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADL 256 (356)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (356)
..|+..|++..+.| +.|+|..|.-............. ..........-..
T Consensus 197 eLA~~ilDe~~~rg--~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw---------------------- 252 (382)
T KOG1548|consen 197 ELAIKILDEDELRG--KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDW---------------------- 252 (382)
T ss_pred HHHHHHhCcccccC--cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhccc----------------------
Confidence 99999999999998 88999887654332211111100 0000000000000
Q ss_pred ccCCCCCCCCCCCCCcEEEEecCC----CCCc-------HHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHH
Q psy9313 257 LNNSMLPPKSLHGSGWCIFVYNLA----PETE-------DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDE 325 (356)
Q Consensus 257 ~~~~~~~~~~~~~~~~~l~V~nlp----~~~t-------~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 325 (356)
.+..+..+.....++|.+.|+- ...+ +++|.+-+++||.|.+|.+.-. .+.|.+-|.|.+..+
T Consensus 253 --~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~ee 326 (382)
T KOG1548|consen 253 --RPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEE 326 (382)
T ss_pred --CCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHH
Confidence 0000112222356789999992 2222 3777888999999999887644 457899999999999
Q ss_pred HHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 326 AVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 326 A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
|..|++.|+|+.++||.|+.+.+-.
T Consensus 327 A~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 327 ADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHhcCeeecceEEEEEEeCC
Confidence 9999999999999999999887643
No 58
>KOG0122|consensus
Probab=99.70 E-value=9.8e-17 Score=127.70 Aligned_cols=83 Identities=34% Similarity=0.540 Sum_probs=80.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|.|.||+.++++++|.++|.+||.|.++.+.++.+||.++|||||.|.+.++|.+|++.|||+-+++-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
+++
T Consensus 268 P~~ 270 (270)
T KOG0122|consen 268 PSN 270 (270)
T ss_pred CCC
Confidence 863
No 59
>KOG4211|consensus
Probab=99.69 E-value=7.4e-16 Score=134.61 Aligned_cols=170 Identities=16% Similarity=0.204 Sum_probs=126.1
Q ss_pred ccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy9313 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191 (356)
Q Consensus 112 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 191 (356)
..-|.+++||+++|++||.++|+.. .|.++.+.+. +|+..|.|||+|.+.+++++|+++ +.
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~-----------------~Gr~sGeA~Ve~~seedv~~Alkk-dR 70 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR-----------------NGRPSGEAYVEFTSEEDVEKALKK-DR 70 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc-----------------CCCcCcceEEEeechHHHHHHHHh-hH
Confidence 4457889999999999999999998 6777666655 346799999999999999999984 66
Q ss_pred CCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCC
Q psy9313 192 TIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSG 271 (356)
Q Consensus 192 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (356)
..+.. +-|.|-.+..... +..... .+.......
T Consensus 71 ~~mg~--RYIEVf~~~~~e~-------------------------------------------d~~~~~--~g~~s~~~d 103 (510)
T KOG4211|consen 71 ESMGH--RYIEVFTAGGAEA-------------------------------------------DWVMRP--GGPNSSAND 103 (510)
T ss_pred HHhCC--ceEEEEccCCccc-------------------------------------------cccccC--CCCCCCCCC
Confidence 66666 4555544322110 000000 000111244
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeE-EEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQN-VKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
-+|.+++||+.+|++||.++|+..-.|.. +.++.++ .++++|.|||+|++.+.|+.|+. -|...|+.|-|.|.-+.
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 57999999999999999999998866655 4445554 57799999999999999999998 57788888998887654
No 60
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.68 E-value=3.7e-16 Score=106.13 Aligned_cols=70 Identities=43% Similarity=0.765 Sum_probs=67.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 29 l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
|||+|||..+++++|+++|++||.+..+.+..+ .++..+++|||+|.+.++|.+|++.++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5789999999999999999999999999999999985
No 61
>KOG1457|consensus
Probab=99.67 E-value=5.4e-16 Score=121.68 Aligned_cols=212 Identities=21% Similarity=0.262 Sum_probs=133.8
Q ss_pred ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy9313 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189 (356)
Q Consensus 110 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 189 (356)
..-++|||.+||.++...+|+.+|..|--.+...+......++ .++.+||++|.+..+|..|+..+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~--------------~~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQ--------------VCKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCc--------------cccceEEEEecchHHHHHHHHHh
Confidence 3468999999999999999999999998888777766554433 57799999999999999999999
Q ss_pred cCCCcC-CCcccEEEEEccChhhhhHHHhhhh----------HHHHHHH-HHHhhhhcccCCCCccc-----ccc---cc
Q psy9313 190 NGTIPE-GASEPITVKFANSPAGRAKALAANL----------NAQAAAM-RHFAAAMRHFGNPLHHS-----ARF---KF 249 (356)
Q Consensus 190 ~~~~~~-~~~~~i~v~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~---~~ 249 (356)
+|..++ .....+++++++.....+....... +.+.... ............|...+ +.. ..
T Consensus 98 NGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~ 177 (284)
T KOG1457|consen 98 NGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDT 177 (284)
T ss_pred cCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccc
Confidence 998875 3335677777665433222111100 0000000 00000000000010000 000 00
Q ss_pred CccccccccCCCCCCC-----------CCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEE
Q psy9313 250 APLTADLLNNSMLPPK-----------SLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFV 318 (356)
Q Consensus 250 ~~~~~~~~~~~~~~~~-----------~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV 318 (356)
.........+...+.. .....+.||||-||...+++++|+.+|+.|.....++|.-. .....||+
T Consensus 178 t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~ 253 (284)
T KOG1457|consen 178 TKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFA 253 (284)
T ss_pred cchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEee
Confidence 0000000011111111 11225679999999999999999999999988777766433 22457999
Q ss_pred EEccHHHHHHHHHHhCCcccC
Q psy9313 319 CMTNYDEAVFAIQSLNGYALG 339 (356)
Q Consensus 319 ~f~~~~~A~~a~~~l~g~~l~ 339 (356)
+|++.+.|..|+..|+|..|.
T Consensus 254 ~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 254 DFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred cHHHHHHHHHHHHHhhcceec
Confidence 999999999999999998765
No 62
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=5e-16 Score=105.48 Aligned_cols=70 Identities=31% Similarity=0.630 Sum_probs=66.9
Q ss_pred EEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEE
Q psy9313 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344 (356)
Q Consensus 274 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~ 344 (356)
|||+|||..+++++|+++|++||.|..+.++.+ .++..+++|||+|.+.++|.+|++.|+|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999997 5678899999999999999999999999999999986
No 63
>KOG1457|consensus
Probab=99.66 E-value=5.6e-15 Score=116.04 Aligned_cols=160 Identities=19% Similarity=0.299 Sum_probs=126.1
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCC-CccceEEEEEecCHHHHHHHHHHhCCcee--
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT-AQSLGYGFVNYYRTEDAERAIIELNGLKL-- 93 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~-- 93 (356)
....+.+..-+||||.+||.++...+|..+|..|-..+...+..-... ..-+-+|||.|.+..+|..|+..|||..|
T Consensus 25 ~~~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDp 104 (284)
T KOG1457|consen 25 PLLADEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDP 104 (284)
T ss_pred ccccccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeecc
Confidence 334455666899999999999999999999999977776665443222 23457999999999999999999999998
Q ss_pred -CCeEEEEEecCCCccc---------------------------------------------------------------
Q psy9313 94 -QNKSIKVSYARPSSEA--------------------------------------------------------------- 109 (356)
Q Consensus 94 -~g~~l~v~~~~~~~~~--------------------------------------------------------------- 109 (356)
.++.|++++++...+.
T Consensus 105 E~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~ 184 (284)
T KOG1457|consen 105 ETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALS 184 (284)
T ss_pred ccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhh
Confidence 6789999998532110
Q ss_pred -----------------------ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCC
Q psy9313 110 -----------------------IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166 (356)
Q Consensus 110 -----------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~ 166 (356)
..-.+|||.||..+++|++|+.+|+.|......+|...
T Consensus 185 a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~------------------- 245 (284)
T KOG1457|consen 185 APDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR------------------- 245 (284)
T ss_pred hhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC-------------------
Confidence 00115999999999999999999999987666666433
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCCcC
Q psy9313 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPE 195 (356)
Q Consensus 167 ~~~g~afV~f~~~~~a~~a~~~~~~~~~~ 195 (356)
..-..||++|++.+.|..|+..++|..+-
T Consensus 246 ~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 246 GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 13578999999999999999999987764
No 64
>KOG4307|consensus
Probab=99.66 E-value=5.8e-15 Score=133.59 Aligned_cols=175 Identities=13% Similarity=0.034 Sum_probs=135.0
Q ss_pred CCCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeC
Q psy9313 15 RSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQ 94 (356)
Q Consensus 15 ~~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 94 (356)
.++...+.....+.+-+.+.++...+.|++++|... .+....+..+.-.+...|-++|+|....++++|+ ..|...+.
T Consensus 300 sggstpqvv~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~ 377 (944)
T KOG4307|consen 300 SGGSTPQVVSDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDDV 377 (944)
T ss_pred CCCCCCcccchhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhhh
Confidence 344555667788999999999999999999998775 3444555555555666899999999999999999 55777777
Q ss_pred CeEEEEEecCCC---------------------------------------cccccccceEEcCCCCCCCHHHHHHhhcc
Q psy9313 95 NKSIKVSYARPS---------------------------------------SEAIKRANLYVSGLPKHMTQEDLENLFRP 135 (356)
Q Consensus 95 g~~l~v~~~~~~---------------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~ 135 (356)
.|.+.+..+... .......+|||.+||..+++.++.++|..
T Consensus 378 ~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~ 457 (944)
T KOG4307|consen 378 NRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMG 457 (944)
T ss_pred hcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhh
Confidence 888887665210 01123447999999999999999999998
Q ss_pred cCCeEE-EEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccCh
Q psy9313 136 YGTIIT-SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209 (356)
Q Consensus 136 ~g~i~~-v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~ 209 (356)
.-.|++ |.|-+.... +..+.|||.|..++++..|....+...+.. +.|+|......
T Consensus 458 ~~~Ved~I~lt~~P~~----------------~~~~~afv~F~~~~a~~~a~~~~~k~y~G~--r~irv~si~~~ 514 (944)
T KOG4307|consen 458 AAAVEDFIELTRLPTD----------------LLRPAAFVAFIHPTAPLTASSVKTKFYPGH--RIIRVDSIADY 514 (944)
T ss_pred hhhhhheeEeccCCcc----------------cccchhhheeccccccchhhhcccccccCc--eEEEeechhhH
Confidence 888887 666555444 568999999999999999998777777776 77888765543
No 65
>KOG0122|consensus
Probab=99.65 E-value=1.2e-15 Score=121.53 Aligned_cols=85 Identities=32% Similarity=0.595 Sum_probs=81.2
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
.....++|.|.||+.+++|++|+++|.+||.|..+.+.+++.||.++|||||.|.+.++|.+|+..|||+-+..--|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy9313 102 YARPS 106 (356)
Q Consensus 102 ~~~~~ 106 (356)
|++|.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99985
No 66
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.6e-15 Score=123.66 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=73.3
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
.++|||+|||+.+|+++|+++|+.||.|.+|.|+.+.. ++|||||+|.+.++|..|+. |+|..|.|+.|.|.++.+
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 46899999999999999999999999999999999864 47999999999999999996 999999999999999986
Q ss_pred CCCC
Q psy9313 351 KPLP 354 (356)
Q Consensus 351 ~~~~ 354 (356)
-..|
T Consensus 80 ~~~p 83 (260)
T PLN03120 80 YQLP 83 (260)
T ss_pred CCCC
Confidence 5443
No 67
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=4.4e-15 Score=100.65 Aligned_cols=70 Identities=30% Similarity=0.620 Sum_probs=65.1
Q ss_pred EEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEE
Q psy9313 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344 (356)
Q Consensus 274 l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~ 344 (356)
|+|+|||+.+++++|.++|+.||.|..+.+..+++ +.++|+|||+|.+.++|.+|++.++|..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999999987 89999999999999999999999999999999884
No 68
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.62 E-value=4.2e-15 Score=100.75 Aligned_cols=70 Identities=36% Similarity=0.695 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 29 l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
|+|+|||+++++++|+++|+.+|.|..+.+..++. +..+++|||+|.+.++|.+|+..++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 89999999999999999999999999999999874
No 69
>KOG0121|consensus
Probab=99.62 E-value=1.3e-15 Score=108.86 Aligned_cols=80 Identities=24% Similarity=0.375 Sum_probs=76.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.++||||+||++.++++.|.++|+++|.|..|.+-.|+.+-.++|||||+|-+.++|..|++.++|..|+.+.|+++|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 67899999999999999999999999999999998998888899999999999999999999999999999999999853
No 70
>KOG4207|consensus
Probab=99.62 E-value=5.4e-16 Score=120.27 Aligned_cols=82 Identities=28% Similarity=0.382 Sum_probs=78.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.-++|.|.||.+.++.++|..+|++||.|-+|.|+.|+.|+.++|||||.|....+|+.|+++|+|..|+|+.|+|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy9313 350 HK 351 (356)
Q Consensus 350 ~~ 351 (356)
=.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 43
No 71
>KOG0125|consensus
Probab=99.59 E-value=4.3e-15 Score=123.28 Aligned_cols=79 Identities=30% Similarity=0.393 Sum_probs=74.3
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|+|.|||+...+-||+..|++||.|.+|.|+.+. ..||||+||+|++.+||.+|...|||..+.||+|.|.-|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45689999999999999999999999999999999985 3679999999999999999999999999999999999987
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
.
T Consensus 173 a 173 (376)
T KOG0125|consen 173 A 173 (376)
T ss_pred h
Confidence 5
No 72
>KOG0130|consensus
Probab=99.59 E-value=4.7e-15 Score=107.03 Aligned_cols=92 Identities=27% Similarity=0.391 Sum_probs=85.5
Q ss_pred CCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe
Q psy9313 262 LPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR 341 (356)
Q Consensus 262 ~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr 341 (356)
.++..-...++.|+|.++....++++|.+.|..||.|+.+.+-.|+.||-.+|||+|+|++..+|++|+..|||..|.|.
T Consensus 63 ~pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q 142 (170)
T KOG0130|consen 63 RPGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ 142 (170)
T ss_pred CCCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC
Confidence 34444555889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q psy9313 342 LLQVSFKTHKPL 353 (356)
Q Consensus 342 ~l~v~~a~~~~~ 353 (356)
.|.|+|+-.+++
T Consensus 143 ~v~VDw~Fv~gp 154 (170)
T KOG0130|consen 143 NVSVDWCFVKGP 154 (170)
T ss_pred ceeEEEEEecCC
Confidence 999999988775
No 73
>KOG0114|consensus
Probab=99.59 E-value=1.4e-14 Score=99.69 Aligned_cols=80 Identities=23% Similarity=0.461 Sum_probs=73.9
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
+..++.|||+|||+.+|.++.-++|.+||.|..|+|--.+.| +|.|||.|++..+|.+|++.|+|..+.++.|.|-|
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vly 91 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLY 91 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEEe
Confidence 345678999999999999999999999999999999877665 89999999999999999999999999999999998
Q ss_pred ecC
Q psy9313 348 KTH 350 (356)
Q Consensus 348 a~~ 350 (356)
..+
T Consensus 92 yq~ 94 (124)
T KOG0114|consen 92 YQP 94 (124)
T ss_pred cCH
Confidence 764
No 74
>KOG0121|consensus
Probab=99.58 E-value=4.4e-15 Score=106.20 Aligned_cols=84 Identities=24% Similarity=0.469 Sum_probs=79.2
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
.-+.+|||||+||+..++|++|.++|++.|+|..|.+=.|+.+...=|||||+|.+.++|..|++.++|+.+..+.|++.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 45789999999999999999999999999999999998898888889999999999999999999999999999999999
Q ss_pred ecCC
Q psy9313 102 YARP 105 (356)
Q Consensus 102 ~~~~ 105 (356)
|-..
T Consensus 112 ~D~G 115 (153)
T KOG0121|consen 112 WDAG 115 (153)
T ss_pred cccc
Confidence 8753
No 75
>KOG0126|consensus
Probab=99.58 E-value=4e-16 Score=118.53 Aligned_cols=83 Identities=24% Similarity=0.498 Sum_probs=77.7
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
+.-|||+|||++.|+.||..+|++||.|..|.+++|..||+++||||++|++.-+..-|+..|||..|.||.|+|+.-..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCC
Q psy9313 351 KPL 353 (356)
Q Consensus 351 ~~~ 353 (356)
-..
T Consensus 115 Yk~ 117 (219)
T KOG0126|consen 115 YKK 117 (219)
T ss_pred ccC
Confidence 543
No 76
>KOG1548|consensus
Probab=99.57 E-value=2.3e-13 Score=113.95 Aligned_cols=168 Identities=22% Similarity=0.321 Sum_probs=136.6
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCce--------eEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCC
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVE--------SCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNG 90 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~--------~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 90 (356)
....+..++.|||.|||.++|-+++.++|+++|.|. .|++.++. .|.-+|=|.+.|-..++...|+..|++
T Consensus 127 ~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 127 FNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred cCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCc
Confidence 334567788899999999999999999999999653 47788876 499999999999999999999999999
Q ss_pred ceeCCeEEEEEecCC--------------------------------------CcccccccceEEcCCCCC----CC---
Q psy9313 91 LKLQNKSIKVSYARP--------------------------------------SSEAIKRANLYVSGLPKH----MT--- 125 (356)
Q Consensus 91 ~~~~g~~l~v~~~~~--------------------------------------~~~~~~~~~l~v~nl~~~----~t--- 125 (356)
..++|+.|+|..++= .+.....++|.+.|+=.. .+
T Consensus 206 ~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l 285 (382)
T KOG1548|consen 206 DELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDL 285 (382)
T ss_pred ccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHH
Confidence 999999999998840 011233457888887321 22
Q ss_pred ----HHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccE
Q psy9313 126 ----QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPI 201 (356)
Q Consensus 126 ----~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i 201 (356)
.++|++-.+.||.|.+|.|.-. .+.|.+-|.|.+.++|..|++.|+|+.+.| +.|
T Consensus 286 ~~dlkedl~eec~K~G~v~~vvv~d~-------------------hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg--Rql 344 (382)
T KOG1548|consen 286 LNDLKEDLTEECEKFGQVRKVVVYDR-------------------HPDGVVTVSFRNNEEADQCIQTMDGRWFDG--RQL 344 (382)
T ss_pred HHHHHHHHHHHHHHhCCcceEEEecc-------------------CCCceeEEEeCChHHHHHHHHHhcCeeecc--eEE
Confidence 3667788899999999988754 367999999999999999999999999999 666
Q ss_pred EEEEccC
Q psy9313 202 TVKFANS 208 (356)
Q Consensus 202 ~v~~~~~ 208 (356)
.......
T Consensus 345 ~A~i~DG 351 (382)
T KOG1548|consen 345 TASIWDG 351 (382)
T ss_pred EEEEeCC
Confidence 6655443
No 77
>KOG4212|consensus
Probab=99.57 E-value=1.4e-13 Score=118.52 Aligned_cols=220 Identities=21% Similarity=0.246 Sum_probs=146.8
Q ss_pred cccceEEcCCCCCCCHHHHHHhhc-ccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFR-PYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~-~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 189 (356)
..+.+||.|+|+++..++|+++|. +.|+|..|.++.|... +++|+|.|+|+++|.+++|++.|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~G----------------K~rGcavVEFk~~E~~qKa~E~l 106 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESG----------------KARGCAVVEFKDPENVQKALEKL 106 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCC----------------CcCCceEEEeeCHHHHHHHHHHh
Confidence 345699999999999999999995 7899999999999866 57999999999999999999999
Q ss_pred cCCCcCCCcccEEEEEccChhhhhHHHhhhhH-------HHHHHHHHHhhhhc------ccCCCCcccccc----ccCcc
Q psy9313 190 NGTIPEGASEPITVKFANSPAGRAKALAANLN-------AQAAAMRHFAAAMR------HFGNPLHHSARF----KFAPL 252 (356)
Q Consensus 190 ~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------~~~~~~~~~~~~----~~~~~ 252 (356)
+...+.+ +++.++.............-... ........+..... .-+.+.....+. .....
T Consensus 107 nk~~~~G--R~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~ 184 (608)
T KOG4212|consen 107 NKYEVNG--RELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTM 184 (608)
T ss_pred hhccccC--ceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCcccc
Confidence 9999999 78888765442221111000000 00000000000000 000000000000 01111
Q ss_pred cccc--------ccCCC--CC--CCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEE
Q psy9313 253 TADL--------LNNSM--LP--PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCM 320 (356)
Q Consensus 253 ~~~~--------~~~~~--~~--~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f 320 (356)
+.+. +..+. .. ..-.+.....++|.||.+.+..+.|.+.|.-.|.|+.+.+-.+++ |.++|++.++|
T Consensus 185 ~~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y 263 (608)
T KOG4212|consen 185 SNDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEY 263 (608)
T ss_pred ccccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEe
Confidence 1111 00000 00 001223455789999999999999999999999999999888875 58899999999
Q ss_pred ccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 321 TNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 321 ~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+++-+|..|+..+++.-+..++..+.+.+
T Consensus 264 ~hpveavqaIsml~~~g~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 264 DHPVEAVQAISMLDRQGLFDRRMTVRLDR 292 (608)
T ss_pred cchHHHHHHHHhhccCCCccccceeeccc
Confidence 99999999999999877777877777643
No 78
>KOG0113|consensus
Probab=99.57 E-value=1.6e-14 Score=118.42 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 266 SLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 266 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
....+-+||||.-|++++++..|+..|+.||.|+.|.|+.+..||+++|||||+|++.-+...|....+|..|+|+.|.|
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 33457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q psy9313 346 SFKTH 350 (356)
Q Consensus 346 ~~a~~ 350 (356)
++-..
T Consensus 176 DvERg 180 (335)
T KOG0113|consen 176 DVERG 180 (335)
T ss_pred Eeccc
Confidence 98764
No 79
>KOG0107|consensus
Probab=99.57 E-value=9.7e-15 Score=110.52 Aligned_cols=77 Identities=27% Similarity=0.443 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
..++|||+||+..+++.||..+|..||++..|+|-..+. |||||+|.+..+|..|+..|+|..|+|..|+|+++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-----GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-----GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-----CceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 379999999999999999999999999999999988653 799999999999999999999999999999999987
Q ss_pred CC
Q psy9313 105 PS 106 (356)
Q Consensus 105 ~~ 106 (356)
-.
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 44
No 80
>KOG0106|consensus
Probab=99.56 E-value=5.1e-15 Score=118.73 Aligned_cols=164 Identities=26% Similarity=0.416 Sum_probs=126.5
Q ss_pred cceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy9313 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192 (356)
Q Consensus 113 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 192 (356)
..+||++||+.+.+.+|..+|..||.+.++.+ ..||+||+|.+..+|.-|+..+++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m-----------------------k~gf~fv~fed~rda~Dav~~l~~~ 58 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM-----------------------KNGFGFVEFEDPRDADDAVHDLDGK 58 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee-----------------------ecccceeccCchhhhhcccchhcCc
Confidence 35899999999999999999999999998877 3688999999999999999999999
Q ss_pred CcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCCc
Q psy9313 193 IPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGW 272 (356)
Q Consensus 193 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (356)
.+.+- .+.+.++....... +.+... .... ............+
T Consensus 59 ~l~~e--~~vve~~r~~~~~~------------------------g~~~~g-----~r~~-------~~~~~~~p~~s~~ 100 (216)
T KOG0106|consen 59 ELCGE--RLVVEHARGKRRGR------------------------GRPRGG-----DRRS-------DSRRYRPPSRTHF 100 (216)
T ss_pred eecce--eeeeeccccccccc------------------------CCCCCC-----Cccc-------hhhccCCcccccc
Confidence 99883 46666655321110 000000 0000 0000111123567
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
.+.|.+++..+.+.+|.++|+++|.+....+ .++++||+|.+..+|.+|+..++|..+.|+.|.+
T Consensus 101 r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 101 RLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred eeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 8999999999999999999999999855444 2568999999999999999999999999999998
No 81
>KOG0149|consensus
Probab=99.56 E-value=9.9e-15 Score=116.00 Aligned_cols=79 Identities=28% Similarity=0.359 Sum_probs=72.7
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
-+.|||+||+|++..++|+++|++||.|.++.++-|..+|+++||+||+|.+.++|.+|+... +-.|+||+..+.+|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 357999999999999999999999999999999999999999999999999999999999953 4579999988888764
No 82
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.55 E-value=2.8e-14 Score=117.59 Aligned_cols=76 Identities=20% Similarity=0.369 Sum_probs=70.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 105 (356)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++. .+|||||+|.+.++|..|+ .|+|..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 67999999999999999999999999999999998753 4689999999999999999 6999999999999999864
No 83
>KOG0106|consensus
Probab=99.55 E-value=9.5e-15 Score=117.17 Aligned_cols=144 Identities=24% Similarity=0.501 Sum_probs=124.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS 106 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 106 (356)
..+||++||..+.+.+|..+|..||.+.++.+.. ||+||+|.+.-+|..|+..+|+..|.|-.+.+.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5799999999999999999999999999998754 48899999999999999999999999988999998742
Q ss_pred ------cc--------------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCC
Q psy9313 107 ------SE--------------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166 (356)
Q Consensus 107 ------~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~ 166 (356)
.. ......+.+.+++..+.+.+|.+.|.++|.+....+
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---------------------- 131 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---------------------- 131 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh----------------------
Confidence 10 122346889999999999999999999999944333
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEE
Q psy9313 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITV 203 (356)
Q Consensus 167 ~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v 203 (356)
..+++||+|...+++.+|+..+++..+.+ +.+.+
T Consensus 132 -~~~~~~v~Fs~~~da~ra~~~l~~~~~~~--~~l~~ 165 (216)
T KOG0106|consen 132 -RRNFAFVEFSEQEDAKRALEKLDGKKLNG--RRISV 165 (216)
T ss_pred -hccccceeehhhhhhhhcchhccchhhcC--ceeee
Confidence 36899999999999999999999999999 55555
No 84
>KOG0114|consensus
Probab=99.55 E-value=3.4e-14 Score=97.73 Aligned_cols=85 Identities=28% Similarity=0.418 Sum_probs=76.5
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
-.+..++.|||+|||..+|.+++.++|.+||.|.+|++=. +...+|.|||.|++..+|++|++.|+|..+.++.+.|
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~v 89 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVV 89 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEE
Confidence 4567789999999999999999999999999999998844 3457899999999999999999999999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.+..+...
T Consensus 90 lyyq~~~~ 97 (124)
T KOG0114|consen 90 LYYQPEDA 97 (124)
T ss_pred EecCHHHH
Confidence 99876543
No 85
>KOG0107|consensus
Probab=99.54 E-value=2.4e-14 Score=108.46 Aligned_cols=78 Identities=27% Similarity=0.457 Sum_probs=72.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..+.|||+||+..+++.+|...|..||.+.+|.|-..| .|||||+|+++.+|..|+..|+|..|.|..|+|.+++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 35789999999999999999999999999999998865 7999999999999999999999999999999999987
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
..+
T Consensus 84 G~~ 86 (195)
T KOG0107|consen 84 GRP 86 (195)
T ss_pred CCc
Confidence 654
No 86
>KOG4207|consensus
Probab=99.54 E-value=1.8e-14 Score=111.94 Aligned_cols=85 Identities=28% Similarity=0.461 Sum_probs=80.2
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
+..-....+|.|-||-+.++.++|+.+|++||.|-+|.|++|+.|+.++|||||-|....+|+.|++.|+|.+++|+.|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecC
Q psy9313 100 VSYAR 104 (356)
Q Consensus 100 v~~~~ 104 (356)
|++++
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 99875
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.52 E-value=7.9e-14 Score=112.96 Aligned_cols=79 Identities=19% Similarity=0.340 Sum_probs=72.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.+++|+|+||++.+|+++|+++|+.||.|.+|.|+++. ...++|||+|.+.++|..|+. |+|..|.|+.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 46799999999999999999999999999999999985 446899999999999999996 99999999999999877
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
...
T Consensus 80 ~y~ 82 (243)
T PLN03121 80 QYE 82 (243)
T ss_pred ccc
Confidence 543
No 88
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=2.6e-13 Score=118.85 Aligned_cols=123 Identities=39% Similarity=0.677 Sum_probs=108.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC-
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR- 104 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~- 104 (356)
.++|||+|||..+++++|.++|.+||.+..+.+..++.++..+|+|||+|.+.++|..|+..++|..|.|+.|.|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999998899999999999999999999999999999999999999953
Q ss_pred ---CCccc--------------------ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEeccc
Q psy9313 105 ---PSSEA--------------------IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148 (356)
Q Consensus 105 ---~~~~~--------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~ 148 (356)
+.... .....+++.+++..++..++...|..+|.+....+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 21111 123468999999999999999999999999766665543
No 89
>KOG0126|consensus
Probab=99.51 E-value=2e-15 Score=114.72 Aligned_cols=82 Identities=28% Similarity=0.505 Sum_probs=78.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
=..+.-|||+|||+.+||.||.-.|++||.|++|.+++|+.||.++||||+.|.+..+...|+..|||..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q psy9313 103 AR 104 (356)
Q Consensus 103 ~~ 104 (356)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 64
No 90
>KOG0149|consensus
Probab=99.50 E-value=4.9e-14 Score=112.10 Aligned_cols=81 Identities=26% Similarity=0.428 Sum_probs=73.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
+-.=++|||+||+..+..+.|+++|++||+|++..++.|+.+|+++||+||+|++.++|.+|++. .+-.|+||+..+..
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 33457899999999999999999999999999999999999999999999999999999999953 56679999988877
Q ss_pred cC
Q psy9313 103 AR 104 (356)
Q Consensus 103 ~~ 104 (356)
+.
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 64
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.2e-13 Score=120.77 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=72.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccH--HHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY--DEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
.+.+|||+||++.++++||..+|+.||.|.+|.|+ +++| ||||||+|.+. .++.+|+..|||..+.||.|+|.-
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 45689999999999999999999999999999999 4466 99999999987 789999999999999999999999
Q ss_pred ecCC
Q psy9313 348 KTHK 351 (356)
Q Consensus 348 a~~~ 351 (356)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8863
No 92
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=1.8e-13 Score=93.10 Aligned_cols=72 Identities=42% Similarity=0.674 Sum_probs=67.3
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
+|+|.|||..+++++|+++|++||.|..+.+..++ +.++|+|||+|.+.++|..|++.++|..+.|+.+.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998876 6788999999999999999999999999999999873
No 93
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.4e-13 Score=120.29 Aligned_cols=80 Identities=15% Similarity=0.381 Sum_probs=73.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCH--HHHHHHHHHhCCceeCCeEEEE
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT--EDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~g~~~~g~~l~v 100 (356)
.....+|||+||++.++++||+..|..||.|.+|.|++ .+| ||||||+|.+. +++.+|+..|||..|+|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34568999999999999999999999999999999994 467 89999999988 7899999999999999999999
Q ss_pred EecCCC
Q psy9313 101 SYARPS 106 (356)
Q Consensus 101 ~~~~~~ 106 (356)
..++|.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999864
No 94
>smart00360 RRM RNA recognition motif.
Probab=99.48 E-value=1.8e-13 Score=92.78 Aligned_cols=71 Identities=41% Similarity=0.652 Sum_probs=67.1
Q ss_pred EecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 276 VYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 276 V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
|.|||..+++++|+++|++||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999998888999999999999999999999999999999999873
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.48 E-value=2.8e-13 Score=109.77 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
....+|+|+||++.+||++|+++|+.+|+|.+|.++++. ...++|||+|.++++|..|+ .|+|..|.++.|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 346799999999999999999999999999999999884 44579999999999999999 89999999999999876
Q ss_pred C
Q psy9313 104 R 104 (356)
Q Consensus 104 ~ 104 (356)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=4.1e-13 Score=91.26 Aligned_cols=71 Identities=42% Similarity=0.725 Sum_probs=66.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 28 ~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
+|+|+|||..+++++|+++|..||.+..+.+..+. +..+|+|||+|.+.++|..|+..++|..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999988876 778899999999999999999999999999999876
No 97
>KOG0120|consensus
Probab=99.47 E-value=6.6e-13 Score=119.36 Aligned_cols=175 Identities=23% Similarity=0.401 Sum_probs=138.3
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.........++|++||..+++.++++++..||.+....++.+..+|-++||||-+|.+......|+..|||..+.++.|.
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 34566678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCcccc------------------------cccceEEcCCC--CC-CC-------HHHHHHhhcccCCeEEEEEe
Q psy9313 100 VSYARPSSEAI------------------------KRANLYVSGLP--KH-MT-------QEDLENLFRPYGTIITSRIL 145 (356)
Q Consensus 100 v~~~~~~~~~~------------------------~~~~l~v~nl~--~~-~t-------~~~l~~~f~~~g~i~~v~i~ 145 (356)
|..+-...... +...|.+.|+= .+ .+ .++++.-+++||.|.+|.++
T Consensus 363 vq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ip 442 (500)
T KOG0120|consen 363 VQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIP 442 (500)
T ss_pred eehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecC
Confidence 98875322110 01112222210 00 01 15567778899999999998
Q ss_pred cccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccC
Q psy9313 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208 (356)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~ 208 (356)
..... ..+....|..||+|.+.+++++|++.|.|..+.+ +.+...+...
T Consensus 443 r~~~~------------~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n--RtVvtsYyde 491 (500)
T KOG0120|consen 443 RPYPD------------ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN--RTVVASYYDE 491 (500)
T ss_pred CCCCC------------CCcCCCcccEEEEecChHHHHHHHHHccCceeCC--cEEEEEecCH
Confidence 87322 1223568999999999999999999999999999 7777777654
No 98
>KOG0111|consensus
Probab=99.46 E-value=4.9e-14 Score=110.48 Aligned_cols=83 Identities=29% Similarity=0.490 Sum_probs=79.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||++|..++++.-|...|=+||.|..|.++.|-++++.||||||+|.-.++|..|+..||+..|.||.|+|.||+
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
+..
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 754
No 99
>KOG0108|consensus
Probab=99.46 E-value=1.6e-13 Score=122.72 Aligned_cols=81 Identities=33% Similarity=0.508 Sum_probs=78.3
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCC
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~ 351 (356)
+.|+|+|+|+++++++|..+|+..|.|.+++++.|+++|+++||||++|.+.++|..|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred C
Q psy9313 352 P 352 (356)
Q Consensus 352 ~ 352 (356)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 100
>KOG0125|consensus
Probab=99.45 E-value=1.4e-13 Score=114.34 Aligned_cols=105 Identities=30% Similarity=0.477 Sum_probs=87.1
Q ss_pred CCceeCCeEEEEEecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCc
Q psy9313 89 NGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQIS 168 (356)
Q Consensus 89 ~g~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~ 168 (356)
++-...|..+.+..+...+...-..+|+|.|||+..-+.||+.+|.+||.|.+|.|+.+..+ +
T Consensus 73 ~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-----------------S 135 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-----------------S 135 (376)
T ss_pred CCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-----------------C
Confidence 33445566666665555555556678999999999999999999999999999999987544 8
Q ss_pred ccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhh
Q psy9313 169 KGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212 (356)
Q Consensus 169 ~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~ 212 (356)
|||+||+|++.++|++|...|+|..+.| ++|.|..+..+...
T Consensus 136 KGFGFVTmen~~dadRARa~LHgt~VEG--RkIEVn~ATarV~n 177 (376)
T KOG0125|consen 136 KGFGFVTMENPADADRARAELHGTVVEG--RKIEVNNATARVHN 177 (376)
T ss_pred CccceEEecChhhHHHHHHHhhcceeec--eEEEEeccchhhcc
Confidence 9999999999999999999999999999 77888877665443
No 101
>KOG4660|consensus
Probab=99.45 E-value=4e-13 Score=119.59 Aligned_cols=73 Identities=29% Similarity=0.522 Sum_probs=66.3
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.+-+..+|+|.|||.++++++|+..|+.||+|..|+.- -..+|.+||+|.+..+|+.|++.|++..+.|+.+.
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 36678999999999999999999999999999997654 34568999999999999999999999999998887
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.44 E-value=6.7e-13 Score=85.36 Aligned_cols=56 Identities=38% Similarity=0.729 Sum_probs=51.3
Q ss_pred HHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 288 LWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 288 L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|++.|||..+.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997763 589999999999999999999999999999999997
No 103
>KOG0111|consensus
Probab=99.43 E-value=1.1e-13 Score=108.50 Aligned_cols=88 Identities=26% Similarity=0.455 Sum_probs=82.9
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
.....++|||++|...++|.-|..+|-+||.|.+|.++.|..+++.||||||+|.-.++|..|+..||+..+.||.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccc
Q psy9313 102 YARPSSEA 109 (356)
Q Consensus 102 ~~~~~~~~ 109 (356)
+++|....
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99986544
No 104
>KOG0113|consensus
Probab=99.43 E-value=1.1e-12 Score=107.73 Aligned_cols=82 Identities=27% Similarity=0.511 Sum_probs=78.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
..+=+||||.-|+.+++|.+|+..|+.||+|..|.++.++.||.++|||||+|.++.+...|.+..+|..|.|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q psy9313 103 AR 104 (356)
Q Consensus 103 ~~ 104 (356)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 64
No 105
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=8.4e-13 Score=89.38 Aligned_cols=70 Identities=46% Similarity=0.781 Sum_probs=66.2
Q ss_pred EcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 31 VNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 31 v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
|+|||..+++++|+++|+.||.|..+.+..++.++..+|+|||+|.+.++|..|+..+++..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6799999999999999999999999999998777889999999999999999999999999999999876
No 106
>KOG0130|consensus
Probab=99.42 E-value=4.1e-13 Score=97.05 Aligned_cols=84 Identities=26% Similarity=0.411 Sum_probs=79.0
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
+..-+.=.|+|.++-...+|++|.+.|..||+|..|.+-.|+.+|..+|||.|+|.+.++|+.|+..+||..|.|+.|.|
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecC
Q psy9313 101 SYAR 104 (356)
Q Consensus 101 ~~~~ 104 (356)
.|+-
T Consensus 147 Dw~F 150 (170)
T KOG0130|consen 147 DWCF 150 (170)
T ss_pred EEEE
Confidence 9974
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.6e-12 Score=88.82 Aligned_cols=74 Identities=45% Similarity=0.755 Sum_probs=69.1
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
+|+|.|||..+++++|+++|+.||.|..+.+..++.+ .++|+|||+|.+.++|..|++.+++..+.|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 3899999999999999999999999999999988765 6689999999999999999999999999999999875
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.42 E-value=8.5e-13 Score=88.92 Aligned_cols=61 Identities=23% Similarity=0.336 Sum_probs=55.3
Q ss_pred HHHHHHhhc----CCCceeEEE-EeeCCCC--CCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 285 DNVLWQLFG----PFGAVQNVK-VVRDPQT--YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 285 ~~~L~~~f~----~~G~v~~v~-i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
+++|+++|+ +||.|.++. ++.++.+ +.++|+|||+|.+.++|.+|+..|||+.+.||.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 7777666 889999999999999999999999999999999986
No 109
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=5.2e-12 Score=86.23 Aligned_cols=74 Identities=42% Similarity=0.766 Sum_probs=68.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 28 ~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ ..+++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999887643 6788999999999999999999999999999998864
No 110
>KOG1365|consensus
Probab=99.38 E-value=8e-13 Score=112.03 Aligned_cols=162 Identities=18% Similarity=0.251 Sum_probs=120.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc----CCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSV----GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~----g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
..-.|.+++||+++++.|+.++|... |..+.|.++.. ..|+-.|-|||.|..+++|+.||. -+...++-|.|.+
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHH
Confidence 35678899999999999999999642 34566666554 468999999999999999999995 3555555554443
Q ss_pred EecC----------------------C------C---cccccccceEEcCCCCCCCHHHHHHhhcccCCeE-E--EEEec
Q psy9313 101 SYAR----------------------P------S---SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII-T--SRILC 146 (356)
Q Consensus 101 ~~~~----------------------~------~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~-~--v~i~~ 146 (356)
-.+. | . .......+|.+++||+..+.++|.++|..|..-. . |.+..
T Consensus 238 FRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 2221 0 0 1122356899999999999999999999987433 3 55655
Q ss_pred ccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEc
Q psy9313 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206 (356)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~ 206 (356)
+..+ ...|.|||+|.+.++|..|...+++..... +-|.+-..
T Consensus 318 N~qG----------------rPSGeAFIqm~nae~a~aaaqk~hk~~mk~--RYiEvfp~ 359 (508)
T KOG1365|consen 318 NGQG----------------RPSGEAFIQMRNAERARAAAQKCHKKLMKS--RYIEVFPC 359 (508)
T ss_pred cCCC----------------CcChhhhhhhhhhHHHHHHHHHHHHhhccc--ceEEEeec
Confidence 5433 679999999999999999999998887766 55555443
No 111
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.36 E-value=1.4e-11 Score=107.83 Aligned_cols=180 Identities=27% Similarity=0.353 Sum_probs=125.3
Q ss_pred ccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy9313 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191 (356)
Q Consensus 112 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 191 (356)
..+|||+|||.++++++|+++|..||.|..+.+..+..++ .++|+|||+|.+.++|..|+..+++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~---------------~~~g~~~v~f~~~~~~~~a~~~~~~ 179 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETG---------------KSRGFAFVEFESEESAEKAIEELNG 179 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccC---------------ccCceEEEEecCHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999999886432 6899999999999999999999999
Q ss_pred CCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCC
Q psy9313 192 TIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSG 271 (356)
Q Consensus 192 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (356)
..+.+ +++.+................ ....................
T Consensus 180 ~~~~~--~~~~v~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 225 (306)
T COG0724 180 KELEG--RPLRVQKAQPASQPRSELSNN--------------------------------LDASFAKKLSRGKALLLEKS 225 (306)
T ss_pred CeECC--ceeEeeccccccccccccccc--------------------------------cchhhhcccccccccccccc
Confidence 99999 778887754300000000000 00000000011112223356
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 340 (356)
..+++.+++..++..++...|..+|.+....+.............++.+.....+.............+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (306)
T COG0724 226 DNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNSRGNKKKILG 294 (306)
T ss_pred ceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhccccceeecc
Confidence 679999999999999999999999999777776665444444455556665555555555444443333
No 112
>KOG0128|consensus
Probab=99.33 E-value=1.6e-13 Score=127.59 Aligned_cols=236 Identities=19% Similarity=0.146 Sum_probs=187.6
Q ss_pred cCCCCceEEEcCCCCCCCHH-HHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQE-ELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~-~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
.........+.++-+..... ..+..|..+|.|+.|.+......-....++++.+....++..|. ...+..+.++...+
T Consensus 567 ~~~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av 645 (881)
T KOG0128|consen 567 APLERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAV 645 (881)
T ss_pred hhhhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccC
Confidence 34455667777877776555 56788999999999998774332233338999999999999998 66888888888888
Q ss_pred EecCCCccc----------ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCccc
Q psy9313 101 SYARPSSEA----------IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170 (356)
Q Consensus 101 ~~~~~~~~~----------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g 170 (356)
..+.+.... ....++|++||+..+.+++|...|..+|.+..+++....+.+ ..+|
T Consensus 646 ~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~---------------~~rG 710 (881)
T KOG0128|consen 646 GLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEK---------------RFRG 710 (881)
T ss_pred CCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcc---------------cccc
Confidence 877654321 234479999999999999999999999999988887555443 5789
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccC
Q psy9313 171 IGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFA 250 (356)
Q Consensus 171 ~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (356)
+||++|..++++.+|+...++..+.-
T Consensus 711 ~~Y~~F~~~~~~~aaV~f~d~~~~gK------------------------------------------------------ 736 (881)
T KOG0128|consen 711 KAYVEFLKPEHAGAAVAFRDSCFFGK------------------------------------------------------ 736 (881)
T ss_pred ceeeEeecCCchhhhhhhhhhhhhhh------------------------------------------------------
Confidence 99999999999999998644433220
Q ss_pred ccccccccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHH
Q psy9313 251 PLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330 (356)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 330 (356)
..|+|.|.|+..|.+.|+.+++++|.+.+++++... .|+++|.|+|.|.+..+|.++.
T Consensus 737 ---------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~ 794 (881)
T KOG0128|consen 737 ---------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKV 794 (881)
T ss_pred ---------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhc
Confidence 038999999999999999999999999998866554 5899999999999999999999
Q ss_pred HHhCCcccCCeeEEEEEec
Q psy9313 331 QSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 331 ~~l~g~~l~gr~l~v~~a~ 349 (356)
..+.+..+.-+.+.|..+.
T Consensus 795 ~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 795 ASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred ccchhhhhhhcCccccccC
Confidence 8888877776666666533
No 113
>KOG0108|consensus
Probab=99.33 E-value=3.8e-12 Score=114.00 Aligned_cols=79 Identities=37% Similarity=0.649 Sum_probs=77.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 105 (356)
+.|||+|||++++|++|.++|+..|.|.+++++.|+.+|+.+||||++|.+.++|..|++.|||..+.|+.|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999864
No 114
>KOG0415|consensus
Probab=99.32 E-value=2.9e-12 Score=107.64 Aligned_cols=89 Identities=26% Similarity=0.429 Sum_probs=82.4
Q ss_pred CCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe
Q psy9313 262 LPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR 341 (356)
Q Consensus 262 ~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr 341 (356)
++.+....+..+|||.-|.+-++++||.-+|+.||.|.+|.++++..||.+..||||+|++.+++..|.-.|++..|++|
T Consensus 230 lpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr 309 (479)
T KOG0415|consen 230 LPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR 309 (479)
T ss_pred CcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc
Confidence 33444455778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecC
Q psy9313 342 LLQVSFKTH 350 (356)
Q Consensus 342 ~l~v~~a~~ 350 (356)
+|+|+|+.+
T Consensus 310 RIHVDFSQS 318 (479)
T KOG0415|consen 310 RIHVDFSQS 318 (479)
T ss_pred eEEeehhhh
Confidence 999999876
No 115
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=1.1e-11 Score=79.74 Aligned_cols=56 Identities=45% Similarity=0.772 Sum_probs=50.9
Q ss_pred HHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 43 LQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 43 l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
|+++|++||+|.++.+.++. +++|||+|.+.++|..|++.|||..+.|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997764 479999999999999999999999999999999986
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.28 E-value=2.5e-11 Score=81.72 Aligned_cols=61 Identities=31% Similarity=0.560 Sum_probs=54.6
Q ss_pred HHHHHHHhh----ccCCceeEE-EEecCCC--CccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 40 QEELQHLFS----SVGEVESCK-LIRDKTT--AQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 40 e~~l~~~f~----~~g~i~~i~-~~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
+++|+++|+ +||.|.+|. +..++.+ +.++|+|||+|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 6666555 889999999999999999999999999999999976
No 117
>KOG0129|consensus
Probab=99.24 E-value=3e-10 Score=100.73 Aligned_cols=172 Identities=18% Similarity=0.222 Sum_probs=117.7
Q ss_pred ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCccc---EEEEEeCCHHHHHHHH
Q psy9313 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG---IGFVRFNQHIEAEHAM 186 (356)
Q Consensus 110 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g---~afV~f~~~~~a~~a~ 186 (356)
.-+++|||++||.+++|++|...|..||.+. +..+.....+. --..+| |+|+-|+++..++.-+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~------------~~ppkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRG------------RAPPKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccc------------cCCCCCcccEEEEEecchHHHHHHH
Confidence 4467899999999999999999999999875 34442111111 002455 9999999999999998
Q ss_pred HHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCC
Q psy9313 187 QELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKS 266 (356)
Q Consensus 187 ~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (356)
..+.- .....-+.+.. +....+.. ...|.-... ..-......
T Consensus 324 ~aC~~---~~~~~yf~vss--~~~k~k~V--------------------------------QIrPW~laD-s~fv~d~sq 365 (520)
T KOG0129|consen 324 SACSE---GEGNYYFKVSS--PTIKDKEV--------------------------------QIRPWVLAD-SDFVLDHNQ 365 (520)
T ss_pred HHHhh---cccceEEEEec--Ccccccce--------------------------------eEEeeEecc-chhhhccCc
Confidence 87754 22222222322 11111000 000000000 000011222
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHhhc-CCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHH
Q psy9313 267 LHGSGWCIFVYNLAPETEDNVLWQLFG-PFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332 (356)
Q Consensus 267 ~~~~~~~l~V~nlp~~~t~~~L~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 332 (356)
.-.+.+||||++||.-++.++|..+|+ -||.|..+-|-.|++-.-++|-|-|+|.+..+..+|+.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 234678999999999999999999999 699999999999998889999999999999999999985
No 118
>KOG0112|consensus
Probab=99.23 E-value=8e-12 Score=116.96 Aligned_cols=171 Identities=18% Similarity=0.322 Sum_probs=149.7
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
+....+.||+++||+..+++.+|+..|..+|.+.+|.|..-. -+....||||.|.+...+-.|...+.+..|..-.+++
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~ 445 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRI 445 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccc
Confidence 567889999999999999999999999999999999885542 3556679999999999999999999999887777777
Q ss_pred EecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHH
Q psy9313 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHI 180 (356)
Q Consensus 101 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~ 180 (356)
.+..+ .....+.+++++|+.-+....+...|..||.|..|.+.+. ..||||.|++..
T Consensus 446 glG~~--kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---------------------q~yayi~yes~~ 502 (975)
T KOG0112|consen 446 GLGQP--KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---------------------QPYAYIQYESPP 502 (975)
T ss_pred ccccc--ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---------------------CcceeeecccCc
Confidence 77766 4556788999999999999999999999999999877543 689999999999
Q ss_pred HHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHH
Q psy9313 181 EAEHAMQELNGTIPEGASEPITVKFANSPAGRAKA 215 (356)
Q Consensus 181 ~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 215 (356)
.++.|+..+.|..+.+-.+.+.|.++........+
T Consensus 503 ~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~Pqq 537 (975)
T KOG0112|consen 503 AAQAATHDMRGAPLGGPPRRLRVDLASPPGATPQQ 537 (975)
T ss_pred cchhhHHHHhcCcCCCCCcccccccccCCCCChhh
Confidence 99999999999999999999999999877655443
No 119
>KOG4307|consensus
Probab=99.20 E-value=5.4e-10 Score=101.99 Aligned_cols=200 Identities=14% Similarity=0.090 Sum_probs=122.6
Q ss_pred eEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q psy9313 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIP 194 (356)
Q Consensus 115 l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 194 (356)
+-+.+.+++.+..+++++|... .|-...|..+... +...|.++|+|....++++|++. +...+
T Consensus 314 ~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~---------------~~~tG~~~v~f~~~~~~q~A~~r-n~~~~ 376 (944)
T KOG4307|consen 314 NNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVA---------------PPQTGRKTVMFTPQAPFQNAFTR-NPSDD 376 (944)
T ss_pred eeecccccccccchhhhhcCcc-cccccchhhhhcC---------------CCcCCceEEEecCcchHHHHHhc-Cchhh
Confidence 5667889999999999999643 3334444443322 23589999999999999999873 33333
Q ss_pred CCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCCcEE
Q psy9313 195 EGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCI 274 (356)
Q Consensus 195 ~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 274 (356)
.. +.+.+.-+-........... .....+.....+..+....... .....+.....+.+.+|
T Consensus 377 ~~--R~~q~~P~g~~~~~~a~~~~---------~~~~~~~~~~~hg~p~~~pr~~--------~~~gq~vp~P~~ag~~l 437 (944)
T KOG4307|consen 377 VN--RPFQTGPPGNLGRNGAPPFQ---------AGVPPPVIQNNHGRPIAPPRAM--------VRPGQNVPFPGGAGGAL 437 (944)
T ss_pred hh--cceeecCCCccccccCcccc---------ccCCCCcccccCCCCCCCcccc--------cCCCCCCCCCCCccceE
Confidence 33 44544332211100000000 0000000000000000000000 00111111223467789
Q ss_pred EEecCCCCCcHHHHHHhhcCCCceeE-EEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCC
Q psy9313 275 FVYNLAPETEDNVLWQLFGPFGAVQN-VKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351 (356)
Q Consensus 275 ~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~ 351 (356)
||..||..+++.++.++|...-.|++ |.|-+.+ +++-++.|||.|....++.+|...-+.+.++.|.|+|.-...+
T Consensus 438 yv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 438 YVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred EeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 99999999999999999998777765 7776766 4577899999999999999999877888888999999865543
No 120
>KOG4454|consensus
Probab=99.19 E-value=1.4e-11 Score=96.83 Aligned_cols=149 Identities=21% Similarity=0.252 Sum_probs=125.9
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
...+..+||||.|+-..++|+-|.++|-+.|+|..|.|..++ .+..+ ||||.|.++.+..-|+..+||..+.++.+.+
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 345678999999999999999999999999999999988775 45555 9999999999999999999999999999988
Q ss_pred EecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHH
Q psy9313 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHI 180 (356)
Q Consensus 101 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~ 180 (356)
++-...... -|...++++.+...|+.-|++..+.+..+.++ .++.+.|+.+....
T Consensus 82 ~~r~G~sha---------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~----------------rnrn~~~~~~qr~~ 136 (267)
T KOG4454|consen 82 TLRCGNSHA---------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDG----------------RNRNFGFVTYQRLC 136 (267)
T ss_pred ccccCCCcc---------hhhhhcchhhheeeecccCCCCCccccccccC----------------CccCccchhhhhhh
Confidence 754322111 15677899999999999999999999888654 67899999999888
Q ss_pred HHHHHHHHhcCCCcCC
Q psy9313 181 EAEHAMQELNGTIPEG 196 (356)
Q Consensus 181 ~a~~a~~~~~~~~~~~ 196 (356)
..-.++...++....-
T Consensus 137 ~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 137 AVPFALDLYQGLELFQ 152 (267)
T ss_pred cCcHHhhhhcccCcCC
Confidence 8888988877766555
No 121
>KOG4208|consensus
Probab=99.18 E-value=9.8e-11 Score=91.66 Aligned_cols=86 Identities=26% Similarity=0.392 Sum_probs=78.5
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhcc-CCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSV-GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~-g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
+.......+++..+|..+-+.++..+|.++ |.+..+++.+++.||.++|||||+|.+++.|.-|...||++.++++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 445567789999999999999999999998 7888888889999999999999999999999999999999999999999
Q ss_pred EEecCCC
Q psy9313 100 VSYARPS 106 (356)
Q Consensus 100 v~~~~~~ 106 (356)
+.+-.|.
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9987664
No 122
>KOG4208|consensus
Probab=99.16 E-value=1.2e-10 Score=91.23 Aligned_cols=80 Identities=23% Similarity=0.390 Sum_probs=73.8
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCC-CceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPF-GAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.-.+++..+|.-+.+.++..+|.+| |.|..+++-++..||.++|||||+|++.+.|.-|.+.||+..|.|+.|.+.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3468999999999999999999998 677888888999999999999999999999999999999999999999998865
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
+
T Consensus 129 p 129 (214)
T KOG4208|consen 129 P 129 (214)
T ss_pred c
Confidence 4
No 123
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.15 E-value=3.1e-10 Score=79.91 Aligned_cols=79 Identities=16% Similarity=0.234 Sum_probs=72.1
Q ss_pred cEEEEecCCCCCcHHHHHHhhcC--CCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC----CeeEEE
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGP--FGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG----DRLLQV 345 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~----gr~l~v 345 (356)
+||+|+|||...|.++|.+++.. .|....+.++.|..++.+.|||||.|.+++.|.+-.+.++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999865 378899999999999999999999999999999999999999876 588999
Q ss_pred EEecC
Q psy9313 346 SFKTH 350 (356)
Q Consensus 346 ~~a~~ 350 (356)
.||+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 99874
No 124
>KOG0415|consensus
Probab=99.13 E-value=1.1e-10 Score=98.33 Aligned_cols=87 Identities=29% Similarity=0.599 Sum_probs=82.5
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
+.+..++-..|||+-|.+-++.+||.-+|+.||+|.++.++++..||.+.-||||+|.+.+++.+|.-.|++..|.++.|
T Consensus 232 dAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 232 DADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred ccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC
Q psy9313 99 KVSYARP 105 (356)
Q Consensus 99 ~v~~~~~ 105 (356)
+|.++..
T Consensus 312 HVDFSQS 318 (479)
T KOG0415|consen 312 HVDFSQS 318 (479)
T ss_pred Eeehhhh
Confidence 9999864
No 125
>KOG0129|consensus
Probab=99.11 E-value=2.3e-09 Score=95.19 Aligned_cols=156 Identities=17% Similarity=0.295 Sum_probs=116.9
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecC-CCC--ccce---EEEEEecCHHHHHHHHHHhC-
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK-TTA--QSLG---YGFVNYYRTEDAERAIIELN- 89 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~-~~~--~~~g---~afV~f~~~~~A~~a~~~l~- 89 (356)
........-++.|+|++||.+++|+.|...|..||.+. |.+.... ..+ ..+| |+|+.|+++...+.-+..+.
T Consensus 250 ~~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~ 328 (520)
T KOG0129|consen 250 PRGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE 328 (520)
T ss_pred CCCCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh
Confidence 34445677799999999999999999999999999765 5454211 111 2345 99999999999987665443
Q ss_pred ---Ccee-------CCeEEEEEecC---------CCcccccccceEEcCCCCCCCHHHHHHhhc-ccCCeEEEEEecccc
Q psy9313 90 ---GLKL-------QNKSIKVSYAR---------PSSEAIKRANLYVSGLPKHMTQEDLENLFR-PYGTIITSRILCDKM 149 (356)
Q Consensus 90 ---g~~~-------~g~~l~v~~~~---------~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~g~i~~v~i~~~~~ 149 (356)
+.+| ..+.+.|..-. ....-...++|||++||..++.++|..+|+ -||.|..+-|-.|+.
T Consensus 329 ~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k 408 (520)
T KOG0129|consen 329 GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK 408 (520)
T ss_pred cccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc
Confidence 1222 22223333221 223345678999999999999999999998 899999999988854
Q ss_pred cccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy9313 150 ASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188 (356)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 188 (356)
-+ ..+|.|=|+|.+..+-.+||..
T Consensus 409 ~K---------------YPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 409 LK---------------YPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cC---------------CCCCcceeeecccHHHHHHHhh
Confidence 43 5799999999999999999985
No 126
>KOG0153|consensus
Probab=99.11 E-value=3.9e-10 Score=94.96 Aligned_cols=85 Identities=22% Similarity=0.434 Sum_probs=75.4
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHH-HhCCceeC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII-ELNGLKLQ 94 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~-~l~g~~~~ 94 (356)
+...+..+....+|||++|-..++|.+|+++|.+||+|++|.++... +||||+|.+.+.|..|.. .++...|.
T Consensus 218 ~~lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~ 291 (377)
T KOG0153|consen 218 GTLEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVIN 291 (377)
T ss_pred cccCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeec
Confidence 44667778889999999999999999999999999999999998765 499999999999999876 44566789
Q ss_pred CeEEEEEecCCC
Q psy9313 95 NKSIKVSYARPS 106 (356)
Q Consensus 95 g~~l~v~~~~~~ 106 (356)
|++|.|.|.++.
T Consensus 292 G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 292 GFRLKIKWGRPK 303 (377)
T ss_pred ceEEEEEeCCCc
Confidence 999999999983
No 127
>KOG0132|consensus
Probab=99.10 E-value=2.8e-10 Score=105.20 Aligned_cols=78 Identities=21% Similarity=0.401 Sum_probs=73.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.++||||++|+..+++.||.++|+.||.|.+|.++.. +|+|||.+...++|.+|+.+|.+..+.++.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 6789999999999999999999999999999998765 8999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
.+..
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 8764
No 128
>KOG4661|consensus
Probab=99.05 E-value=1.1e-09 Score=97.91 Aligned_cols=84 Identities=29% Similarity=0.445 Sum_probs=78.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
..++.|||.+|...+...||+.+|++||.|...+++.+..+...++|+||+|.+.++|.+||+.||...|+||.|.|.-+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 36789999999999999999999999999999999988777777899999999999999999999999999999999998
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
++-+
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 8754
No 129
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.05 E-value=2.1e-09 Score=75.70 Aligned_cols=79 Identities=30% Similarity=0.461 Sum_probs=69.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcc--CCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeC----CeEEE
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSV--GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQ----NKSIK 99 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~--g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~----g~~l~ 99 (356)
.+||+|+|||...|.++|.+.+... |...-+.++.|..++.+.|||||.|.+.+.|.+..+.++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 3799999999999999999888763 77888999999999999999999999999999999999999884 45667
Q ss_pred EEecC
Q psy9313 100 VSYAR 104 (356)
Q Consensus 100 v~~~~ 104 (356)
|.||+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 77765
No 130
>KOG4454|consensus
Probab=99.03 E-value=9.2e-11 Score=92.34 Aligned_cols=142 Identities=23% Similarity=0.314 Sum_probs=117.3
Q ss_pred ccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy9313 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187 (356)
Q Consensus 108 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 187 (356)
.....++|||.|+...++++-|.++|-+-|+|..+.|+..+..+ .+ ||||.|.++..+..|++
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~----------------~k-Fa~v~f~~E~sv~~a~~ 67 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQE----------------QK-FAYVFFPNENSVQLAGQ 67 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCC----------------Cc-eeeeecccccchhhhhh
Confidence 34567899999999999999999999999999999999887662 34 99999999999999999
Q ss_pred HhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCC
Q psy9313 188 ELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSL 267 (356)
Q Consensus 188 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (356)
.++|..+.+ .++.+++
T Consensus 68 L~ng~~l~~--~e~q~~~-------------------------------------------------------------- 83 (267)
T KOG4454|consen 68 LENGDDLEE--DEEQRTL-------------------------------------------------------------- 83 (267)
T ss_pred hcccchhcc--chhhccc--------------------------------------------------------------
Confidence 999999988 5566553
Q ss_pred CCCCcEEEEec----CCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCccc
Q psy9313 268 HGSGWCIFVYN----LAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYAL 338 (356)
Q Consensus 268 ~~~~~~l~V~n----lp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l 338 (356)
..++ +...++.+-+...|+.-|.+..+++..+.+ |+++.++|+.+--..+.-.+++...+..+
T Consensus 84 -------r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 84 -------RCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred -------ccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 2333 556678888999999999999999998876 78899999998877666677776555433
No 131
>KOG0132|consensus
Probab=99.00 E-value=8.8e-10 Score=101.95 Aligned_cols=77 Identities=32% Similarity=0.567 Sum_probs=71.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
.--++||||++|+..++|.||..+|+.||.|.+|.++.. +|||||.+..-.+|.+|+..|++..+.++.|+|.|
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAW 491 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEee
Confidence 345799999999999999999999999999999988665 47999999999999999999999999999999999
Q ss_pred cCC
Q psy9313 103 ARP 105 (356)
Q Consensus 103 ~~~ 105 (356)
+..
T Consensus 492 a~g 494 (894)
T KOG0132|consen 492 AVG 494 (894)
T ss_pred ecc
Confidence 964
No 132
>KOG0128|consensus
Probab=99.00 E-value=2.4e-11 Score=113.33 Aligned_cols=148 Identities=20% Similarity=0.311 Sum_probs=124.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
.+..++++++||+..+.+.||...|..+|.+..+.+......++-+|+||++|...++|.+|+....+.. .|
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~-~g------- 735 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCF-FG------- 735 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhh-hh-------
Confidence 4667889999999999999999999999988877776566678899999999999999999995544443 33
Q ss_pred cCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHH
Q psy9313 103 ARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEA 182 (356)
Q Consensus 103 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a 182 (356)
...|+|+|.|+..|.++++.+++.+|.+.+..++....+ ..+|.|+|.|.++.++
T Consensus 736 ---------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~g----------------kpkg~a~v~y~~ea~~ 790 (881)
T KOG0128|consen 736 ---------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAG----------------KPKGKARVDYNTEADA 790 (881)
T ss_pred ---------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcc----------------ccccceeccCCCcchh
Confidence 344889999999999999999999999999988777655 5799999999999999
Q ss_pred HHHHHHhcCCCcCCCcccEEE
Q psy9313 183 EHAMQELNGTIPEGASEPITV 203 (356)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~i~v 203 (356)
.+++...+...+..+...+.+
T Consensus 791 s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 791 SRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhcccchhhhhhhcCccccc
Confidence 999988887777664334433
No 133
>KOG0153|consensus
Probab=98.99 E-value=1.3e-09 Score=91.86 Aligned_cols=75 Identities=19% Similarity=0.309 Sum_probs=68.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHh-CCcccCCeeEEEEEe
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL-NGYALGDRLLQVSFK 348 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~l~gr~l~v~~a 348 (356)
..++|||+++-..+++.+|+++|-+||.|.++.+... +++|||+|.+.++|..|...+ +...|+|++|.|.|+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 5679999999999999999999999999999999887 579999999999999988765 555689999999999
Q ss_pred cC
Q psy9313 349 TH 350 (356)
Q Consensus 349 ~~ 350 (356)
++
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 88
No 134
>KOG0112|consensus
Probab=98.98 E-value=4.3e-10 Score=105.65 Aligned_cols=169 Identities=16% Similarity=0.215 Sum_probs=136.4
Q ss_pred CCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHH
Q psy9313 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184 (356)
Q Consensus 105 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 184 (356)
+......+++||++||+..+++.+|+..|..+|.+.+|.|-..... .-.-++||.|.+.+.+-.
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~----------------~esa~~f~~~~n~dmtp~ 428 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK----------------TESAYAFVSLLNTDMTPS 428 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC----------------cccchhhhhhhccccCcc
Confidence 3445567789999999999999999999999999999888665433 346789999999999999
Q ss_pred HHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCC
Q psy9313 185 AMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP 264 (356)
Q Consensus 185 a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (356)
|...+.+..|....+.+.+...
T Consensus 429 ak~e~s~~~I~~g~~r~glG~~---------------------------------------------------------- 450 (975)
T KOG0112|consen 429 AKFEESGPLIGNGTHRIGLGQP---------------------------------------------------------- 450 (975)
T ss_pred cchhhcCCccccCccccccccc----------------------------------------------------------
Confidence 9988888777664333333211
Q ss_pred CCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC--ee
Q psy9313 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD--RL 342 (356)
Q Consensus 265 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g--r~ 342 (356)
.....+.+++++++..+....|...|..||.|..|.+-.. --||+|.|++...|+.|+..|-|..|+| +.
T Consensus 451 --kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r 522 (975)
T KOG0112|consen 451 --KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRR 522 (975)
T ss_pred --ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcc
Confidence 0114557999999999999999999999999988665332 4589999999999999999999999996 88
Q ss_pred EEEEEecCCCCCC
Q psy9313 343 LQVSFKTHKPLPP 355 (356)
Q Consensus 343 l~v~~a~~~~~~~ 355 (356)
++|.||.....+|
T Consensus 523 ~rvdla~~~~~~P 535 (975)
T KOG0112|consen 523 LRVDLASPPGATP 535 (975)
T ss_pred cccccccCCCCCh
Confidence 9999999765444
No 135
>KOG0226|consensus
Probab=98.94 E-value=1.2e-09 Score=88.25 Aligned_cols=76 Identities=36% Similarity=0.583 Sum_probs=71.9
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
...||++.|..+++++-|-..|.+|......+++++..||+++||+||.|.+..++.+|++.|+|+.++.|.|.+.
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999988764
No 136
>KOG4210|consensus
Probab=98.92 E-value=1.7e-09 Score=92.69 Aligned_cols=178 Identities=18% Similarity=0.224 Sum_probs=133.2
Q ss_pred cccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
...++|++++..++.+.++..++..+|......+...... ..+++++++.|...+.+..++....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~---------------~~sk~~~s~~f~~ks~~~~~l~~s~ 151 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDS---------------LSSKGGLSVHFAGKSQFFAALEESG 151 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccc---------------cccccceeeccccHHHHHHHHHhhh
Confidence 4678999999999999999999999998877666553333 2589999999999999999998544
Q ss_pred CCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCC
Q psy9313 191 GTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGS 270 (356)
Q Consensus 191 ~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (356)
...+.++.....+........ ..........+
T Consensus 152 ~~~~~~~~~~~dl~~~~~~~~------------------------------------------------~n~~~~~~~~~ 183 (285)
T KOG4210|consen 152 SKVLDGNKGEKDLNTRRGLRP------------------------------------------------KNKLSRLSSGP 183 (285)
T ss_pred ccccccccccCcccccccccc------------------------------------------------cchhcccccCc
Confidence 334444222221111111000 00000001112
Q ss_pred CcEEE-EecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 271 GWCIF-VYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 271 ~~~l~-V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..+++ |.+++..++.++|+.+|..+|.|..++++.++.++.++|+|+|+|.+...+..++.. ....+.|+.+.+.+..
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 23455 999999999999999999999999999999999999999999999999999999997 8889999999999877
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
..+
T Consensus 263 ~~~ 265 (285)
T KOG4210|consen 263 PRP 265 (285)
T ss_pred CCc
Confidence 643
No 137
>KOG0151|consensus
Probab=98.79 E-value=2.1e-08 Score=92.12 Aligned_cols=92 Identities=26% Similarity=0.431 Sum_probs=81.7
Q ss_pred CCCCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCC---CccceEEEEEecCHHHHHHHHHHhCC
Q psy9313 14 HRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT---AQSLGYGFVNYYRTEDAERAIIELNG 90 (356)
Q Consensus 14 ~~~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g 90 (356)
..++..+++++..+.|||+||+++++|..|..-|..||++..++|+.-+.- .+.+-|+||.|-+-.+|..|++.|+|
T Consensus 162 ~~~gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg 241 (877)
T KOG0151|consen 162 GRPGSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQG 241 (877)
T ss_pred CCCCcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcc
Confidence 345667778999999999999999999999999999999999999875432 34567999999999999999999999
Q ss_pred ceeCCeEEEEEecCC
Q psy9313 91 LKLQNKSIKVSYARP 105 (356)
Q Consensus 91 ~~~~g~~l~v~~~~~ 105 (356)
..+.+..+++.|+++
T Consensus 242 ~iv~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 242 IIVMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeeeccccc
Confidence 999999999999963
No 138
>KOG4661|consensus
Probab=98.76 E-value=4.3e-08 Score=87.94 Aligned_cols=83 Identities=27% Similarity=0.418 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
.--++.|||.+|...+--.||+.+|++||+|+-.+++.+-.+.-.+.|+||++.+.++|.+||..|+.+.|.|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34467899999999999999999999999999999999877788899999999999999999999999999999999998
Q ss_pred cCC
Q psy9313 103 ARP 105 (356)
Q Consensus 103 ~~~ 105 (356)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 864
No 139
>KOG0533|consensus
Probab=98.75 E-value=3.6e-08 Score=81.46 Aligned_cols=81 Identities=27% Similarity=0.310 Sum_probs=73.9
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
...|+|.|||+.++++||+++|..||.+..+.+-+++ +|.+.|.|-|.|...++|..|++.+||..++|+.+.+....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3679999999999999999999999999888888886 588999999999999999999999999999999998887765
Q ss_pred CC
Q psy9313 351 KP 352 (356)
Q Consensus 351 ~~ 352 (356)
+.
T Consensus 162 ~~ 163 (243)
T KOG0533|consen 162 PS 163 (243)
T ss_pred cc
Confidence 43
No 140
>KOG4210|consensus
Probab=98.74 E-value=1.7e-08 Score=86.57 Aligned_cols=167 Identities=18% Similarity=0.220 Sum_probs=132.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc-eeCCeEEEEEe
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL-KLQNKSIKVSY 102 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~-~~~g~~l~v~~ 102 (356)
...++.+++++...+.+.+...++.++|...............++|++++.|...+.+..|+ .+.+. .+.++.+....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l-~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAAL-EESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHH-HhhhccccccccccCcc
Confidence 46899999999999999989999999998777777776667889999999999999999999 55554 44444433222
Q ss_pred cCCC----------cccccccceE-EcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccE
Q psy9313 103 ARPS----------SEAIKRANLY-VSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGI 171 (356)
Q Consensus 103 ~~~~----------~~~~~~~~l~-v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 171 (356)
.... .......+++ +.+++.++++++|+..|..+|.|..+.++.+..+. .++++
T Consensus 165 ~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~---------------~~kg~ 229 (285)
T KOG4210|consen 165 NTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESG---------------DSKGF 229 (285)
T ss_pred cccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCcc---------------chhhh
Confidence 2111 1112233455 99999999999999999999999999999887663 58999
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccCh
Q psy9313 172 GFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209 (356)
Q Consensus 172 afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~ 209 (356)
|||+|.....+..++.. ....+.+ +++.+......
T Consensus 230 a~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~ 264 (285)
T KOG4210|consen 230 AYVDFSAGNSKKLALND-QTRSIGG--RPLRLEEDEPR 264 (285)
T ss_pred hhhhhhhchhHHHHhhc-ccCcccC--cccccccCCCC
Confidence 99999999999999986 7777777 77777766554
No 141
>KOG0533|consensus
Probab=98.73 E-value=6.2e-08 Score=80.10 Aligned_cols=85 Identities=27% Similarity=0.502 Sum_probs=76.0
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
.+.-.++|+|.|||..++++||+++|..||.+..+.+-.++ +|.+.|+|-|.|..-++|..|++.++|..+.|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 34445889999999999999999999999988888877775 69999999999999999999999999999999999988
Q ss_pred ecCCCc
Q psy9313 102 YARPSS 107 (356)
Q Consensus 102 ~~~~~~ 107 (356)
...+..
T Consensus 158 ~i~~~~ 163 (243)
T KOG0533|consen 158 IISSPS 163 (243)
T ss_pred EecCcc
Confidence 776543
No 142
>KOG4209|consensus
Probab=98.71 E-value=3.9e-08 Score=81.59 Aligned_cols=81 Identities=21% Similarity=0.278 Sum_probs=76.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..+.+||+|+.+.+|.+++..+|+.||.|..+.++.+..+|.++||+||+|.+.+.+..++. |+|..|.|+.+.|.+.+
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 44579999999999999999999999999999999999999999999999999999999999 99999999999999987
Q ss_pred CC
Q psy9313 350 HK 351 (356)
Q Consensus 350 ~~ 351 (356)
-.
T Consensus 179 ~~ 180 (231)
T KOG4209|consen 179 TN 180 (231)
T ss_pred ee
Confidence 55
No 143
>KOG4660|consensus
Probab=98.66 E-value=2.8e-08 Score=89.25 Aligned_cols=184 Identities=23% Similarity=0.320 Sum_probs=117.0
Q ss_pred cCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHH
Q psy9313 103 ARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEA 182 (356)
Q Consensus 103 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a 182 (356)
..|.......++|+|-|||..+++++|..+|+.||+|+.|+.-.. ..+..||+|-+.-+|
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~--------------------~~~~~~v~FyDvR~A 125 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN--------------------KRGIVFVEFYDVRDA 125 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc--------------------cCceEEEEEeehHhH
Confidence 345555667889999999999999999999999999999766544 589999999999999
Q ss_pred HHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCC
Q psy9313 183 EHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSML 262 (356)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (356)
++|++.+++..+.++ .++ .+.........+.. .... .....+.... ..
T Consensus 126 ~~Alk~l~~~~~~~~--~~k----~~~~~~~~~~~~~~---~~~~-------~~~~~p~a~s----------------~p 173 (549)
T KOG4660|consen 126 ERALKALNRREIAGK--RIK----RPGGARRAMGLQSG---TSFL-------NHFGSPLANS----------------PP 173 (549)
T ss_pred HHHHHHHHHHHhhhh--hhc----CCCcccccchhccc---chhh-------hhccchhhcC----------------CC
Confidence 999999999999984 343 11111111111000 0000 0011110000 00
Q ss_pred CCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCee
Q psy9313 263 PPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRL 342 (356)
Q Consensus 263 ~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~ 342 (356)
.+.. .+ .++. .|++..+..-+...++-+|.+.. +. ++.-...-|++|.+..++..+...+ |..+.|..
T Consensus 174 gg~~---~~-~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~~~ 241 (549)
T KOG4660|consen 174 GGWP---RG-QLFG-MLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVEFADNRSYAFSEPRG-GFLISNSS 241 (549)
T ss_pred CCCc---CC-ccee-eeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhhhccccchhhcccCC-ceecCCCC
Confidence 0000 11 1222 28888888777777788887655 22 2222336789999888886666644 77777777
Q ss_pred EEEEEecC
Q psy9313 343 LQVSFKTH 350 (356)
Q Consensus 343 l~v~~a~~ 350 (356)
..+.++.+
T Consensus 242 ~v~t~S~~ 249 (549)
T KOG4660|consen 242 GVITFSGP 249 (549)
T ss_pred ceEEecCC
Confidence 77777654
No 144
>KOG4676|consensus
Probab=98.65 E-value=8.4e-09 Score=88.25 Aligned_cols=202 Identities=15% Similarity=0.105 Sum_probs=121.8
Q ss_pred ceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCC
Q psy9313 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193 (356)
Q Consensus 114 ~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~ 193 (356)
-|-|.||.+++|.++++.+|...|.|.++.|...... .+-+.....|||.|.+...+..|.. |.++.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d------------~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntv 75 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDD------------SKIPVISRTCYVKFLDSQSVTVAQH-LTNTV 75 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCC------------ccCcceeeeEEEeccCCcceeHHhh-hccce
Confidence 5789999999999999999999999999998764222 2233567899999999999998887 55555
Q ss_pred cCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCC----CCCCC
Q psy9313 194 PEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPP----KSLHG 269 (356)
Q Consensus 194 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 269 (356)
+-+ ..+.|-.+................++... ..+.+.+....+.+.. ............+.+++ ..+.+
T Consensus 76 fvd--raliv~p~~~~~~p~r~af~~l~~~navp-rll~pdg~Lp~~~~lt---~~nh~p~ailktP~Lp~~~~A~klee 149 (479)
T KOG4676|consen 76 FVD--RALIVRPYGDEVIPDRFAFVELADQNAVP-RLLPPDGVLPGDRPLT---KINHSPNAILKTPELPPQAAAKKLEE 149 (479)
T ss_pred eee--eeEEEEecCCCCCccHHHHHhcCcccccc-cccCCCCccCCCCccc---cccCCccceecCCCCChHhhhhhhHH
Confidence 555 33333333222222221111111111111 1111111111111110 11111111111111111 12223
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG 339 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 339 (356)
-..|++|.+|+..+...++.+.|+.+|.|.+..+--.. ...+|.++|....+...|++ ++|+.+.
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~----~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTASKS----RSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC----CCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 45789999999999999999999999999887765432 24567899998888888888 6776655
No 145
>KOG0151|consensus
Probab=98.65 E-value=9.5e-08 Score=87.94 Aligned_cols=86 Identities=26% Similarity=0.484 Sum_probs=75.4
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCC---CCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP---QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
...+.+||+||++.++++.|...|..||+|.+++|+..+ +....+.++||-|-+..+|.+|+..|+|..+.++.+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 356789999999999999999999999999999998542 22445779999999999999999999999999999999
Q ss_pred EEecCCCCC
Q psy9313 346 SFKTHKPLP 354 (356)
Q Consensus 346 ~~a~~~~~~ 354 (356)
.|++.-+.|
T Consensus 252 gWgk~V~ip 260 (877)
T KOG0151|consen 252 GWGKAVPIP 260 (877)
T ss_pred ccccccccC
Confidence 999765543
No 146
>KOG0116|consensus
Probab=98.58 E-value=3.1e-07 Score=82.28 Aligned_cols=87 Identities=18% Similarity=0.367 Sum_probs=73.1
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
.......+|||+|||.++++.+|+++|+.||.|....|......+....||||+|.+.++++.|+. .+-..+.++++.|
T Consensus 283 ~~~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~V 361 (419)
T KOG0116|consen 283 EPRADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNV 361 (419)
T ss_pred ceeecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEE
Confidence 344555669999999999999999999999999999887765445555899999999999999994 4677899999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
+-.++...
T Consensus 362 eek~~~~~ 369 (419)
T KOG0116|consen 362 EEKRPGFR 369 (419)
T ss_pred Eecccccc
Confidence 98776433
No 147
>KOG4209|consensus
Probab=98.51 E-value=1.8e-07 Score=77.62 Aligned_cols=85 Identities=21% Similarity=0.346 Sum_probs=78.6
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.........+||+|+...+|.+++...|+.+|.+..+.+..++..|..+|||||+|.+.+.+..|+. |+|..|.|+.+.
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3556778999999999999999999999999999999999999988999999999999999999995 999999999999
Q ss_pred EEecCC
Q psy9313 100 VSYARP 105 (356)
Q Consensus 100 v~~~~~ 105 (356)
+.+.+-
T Consensus 174 vt~~r~ 179 (231)
T KOG4209|consen 174 VTLKRT 179 (231)
T ss_pred eeeeee
Confidence 988763
No 148
>KOG0116|consensus
Probab=98.49 E-value=3.3e-07 Score=82.10 Aligned_cols=80 Identities=30% Similarity=0.401 Sum_probs=68.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
...+|||.|||.+++.++|.++|.+||.|+...|......++...||||+|.+.++++.|+.+ +-..++|++|.|.-.+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 345599999999999999999999999999988876543344448999999999999999995 4677899999998766
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
.
T Consensus 366 ~ 366 (419)
T KOG0116|consen 366 P 366 (419)
T ss_pred c
Confidence 5
No 149
>KOG4676|consensus
Probab=98.44 E-value=2.3e-07 Score=79.61 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=114.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecC---CCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK---TTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 28 ~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
.|.|.||.++.|.+++..+|..+|+|.++.+++.. ........|||.|.+...+.-|- .|.++++-++.|.|....
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEecC
Confidence 89999999999999999999999999999998743 23456789999999999998887 778888888877776642
Q ss_pred CCcc--------------------------------------------------------cccccceEEcCCCCCCCHHH
Q psy9313 105 PSSE--------------------------------------------------------AIKRANLYVSGLPKHMTQED 128 (356)
Q Consensus 105 ~~~~--------------------------------------------------------~~~~~~l~v~nl~~~~t~~~ 128 (356)
.... ....+++++.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 1000 00113689999999999999
Q ss_pred HHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCc
Q psy9313 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIP 194 (356)
Q Consensus 129 l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~ 194 (356)
+.++|..+|.|..-.+-.. ....+|.++|........|+.. +|..+
T Consensus 168 ~~e~f~r~Gev~ya~~ask-------------------~~s~~c~~sf~~qts~~halr~-~gre~ 213 (479)
T KOG4676|consen 168 SGESFERKGEVSYAHTASK-------------------SRSSSCSHSFRKQTSSKHALRS-HGRER 213 (479)
T ss_pred hhhhhhhcchhhhhhhhcc-------------------CCCcchhhhHhhhhhHHHHHHh-cchhh
Confidence 9999999999875544322 3456778999999999999884 55443
No 150
>KOG2193|consensus
Probab=98.44 E-value=3e-08 Score=85.79 Aligned_cols=154 Identities=21% Similarity=0.365 Sum_probs=120.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCce-eCCeEEEEEecCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLK-LQNKSIKVSYARP 105 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g~~l~v~~~~~ 105 (356)
+.+||+||.+.++..||...|...-.-..-.++.. .|||||...+...|.+|++.++|.. +.|..+.+..+-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 47899999999999999999987632222222222 2699999999999999999999875 8999999998887
Q ss_pred CcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHH
Q psy9313 106 SSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185 (356)
Q Consensus 106 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a 185 (356)
+... ++++-++|+|.....+-+-.+..+||.+..+....... -.-..=|+|...+.++.|
T Consensus 76 kkqr--srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~------------------etavvnvty~~~~~~~~a 135 (584)
T KOG2193|consen 76 KKQR--SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS------------------ETAVVNVTYSAQQQHRQA 135 (584)
T ss_pred HHHH--hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch------------------HHHHHHHHHHHHHHHHHH
Confidence 6543 56688999999999999999999999999887643321 122233789999999999
Q ss_pred HHHhcCCCcCCCcccEEEEEccC
Q psy9313 186 MQELNGTIPEGASEPITVKFANS 208 (356)
Q Consensus 186 ~~~~~~~~~~~~~~~i~v~~~~~ 208 (356)
+..+++..+.. ..+++.+...
T Consensus 136 i~kl~g~Q~en--~~~k~~YiPd 156 (584)
T KOG2193|consen 136 IHKLNGPQLEN--QHLKVGYIPD 156 (584)
T ss_pred HHhhcchHhhh--hhhhcccCch
Confidence 99999988877 5566666543
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.43 E-value=1.4e-06 Score=58.39 Aligned_cols=68 Identities=26% Similarity=0.290 Sum_probs=47.6
Q ss_pred cEEEEecCCCCCcH----HHHHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 272 WCIFVYNLAPETED----NVLWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 272 ~~l~V~nlp~~~t~----~~L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
+.|+|.|||...+. ..|++++..+| .|.+|. .+.|+|.|.+.+.|.+|...|+|..+.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 36999999987776 45666777886 555542 3579999999999999999999999999999999
Q ss_pred Eec
Q psy9313 347 FKT 349 (356)
Q Consensus 347 ~a~ 349 (356)
|..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 984
No 152
>KOG0226|consensus
Probab=98.41 E-value=3.5e-07 Score=74.20 Aligned_cols=82 Identities=28% Similarity=0.471 Sum_probs=75.6
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
-+....+||-+.|..+++.+.|-..|.+|-.....++++++.+|+++||+||.|.+.+++..|++.|+|.+++.+.|...
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 35667899999999999999999999999888889999999999999999999999999999999999999999988765
Q ss_pred ec
Q psy9313 102 YA 103 (356)
Q Consensus 102 ~~ 103 (356)
-+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 44
No 153
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.31 E-value=3.6e-06 Score=56.39 Aligned_cols=70 Identities=24% Similarity=0.332 Sum_probs=47.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhh----ccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFS----SVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~----~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
+.|+|.|||.+.....|+.-+. -+| +|.+|. .+.|.|.|.+.+.|.+|.+.|+|....|+.|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999998877765444 454 566551 2589999999999999999999999999999999
Q ss_pred ecCCC
Q psy9313 102 YARPS 106 (356)
Q Consensus 102 ~~~~~ 106 (356)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 88543
No 154
>KOG2193|consensus
Probab=98.30 E-value=1.5e-07 Score=81.60 Aligned_cols=153 Identities=25% Similarity=0.378 Sum_probs=116.4
Q ss_pred cceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy9313 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192 (356)
Q Consensus 113 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 192 (356)
+.+|++||...++.+++..+|.....-.+-.++ ...||+||.+.+...|.+|++.++|.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl---------------------~k~gyafvd~pdq~wa~kaie~~sgk 60 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL---------------------VKSGYAFVDCPDQQWANKAIETLSGK 60 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee---------------------eecceeeccCCchhhhhhhHHhhchh
Confidence 468999999999999999999764211111111 24699999999999999999998874
Q ss_pred -CcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCC
Q psy9313 193 -IPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSG 271 (356)
Q Consensus 193 -~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (356)
.+.| ..+.+...-....+..
T Consensus 61 ~elqG--kr~e~~~sv~kkqrsr--------------------------------------------------------- 81 (584)
T KOG2193|consen 61 VELQG--KRQEVEHSVPKKQRSR--------------------------------------------------------- 81 (584)
T ss_pred hhhcC--ceeeccchhhHHHHhh---------------------------------------------------------
Confidence 4556 5566655443332211
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEe-eCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVV-RDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
.+-|+|+|...-++.|..++..||.+..|... .+++ +-..-|+|.+.+.++-|+..++|..+.+..+.+.|-.+
T Consensus 82 -k~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e----tavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 82 -KIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE----TAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred -hhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH----HHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 36799999999999999999999999988663 2322 23456789999999999999999999999999998653
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.26 E-value=3e-06 Score=61.40 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=44.5
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC-----cccCCeeEEE
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG-----YALGDRLLQV 345 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g-----~~l~gr~l~v 345 (356)
++.|.+.+++..++.++|++.|++||.|.+|.+.+. -..|+|.|.+.++|+.|+..+.- ..+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 467999999999999999999999999999888665 34699999999999999987743 3555655554
Q ss_pred E
Q psy9313 346 S 346 (356)
Q Consensus 346 ~ 346 (356)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 156
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.25 E-value=2.4e-06 Score=72.14 Aligned_cols=83 Identities=22% Similarity=0.415 Sum_probs=67.1
Q ss_pred CCCCceEEEcCCCCCCCHHHH------HHHhhccCCceeEEEEecCC-CCccceEE--EEEecCHHHHHHHHHHhCCcee
Q psy9313 23 NEQNSNLIVNYVPQTMTQEEL------QHLFSSVGEVESCKLIRDKT-TAQSLGYG--FVNYYRTEDAERAIIELNGLKL 93 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l------~~~f~~~g~i~~i~~~~~~~-~~~~~g~a--fV~f~~~~~A~~a~~~l~g~~~ 93 (356)
-....-+||-+||+.+..+++ .++|.+||.|..|.+-+.-. .+...+.+ ||+|.+.++|.+|+...+|..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 345678999999999987773 38999999999997755431 12333444 9999999999999999999999
Q ss_pred CCeEEEEEecCC
Q psy9313 94 QNKSIKVSYARP 105 (356)
Q Consensus 94 ~g~~l~v~~~~~ 105 (356)
.||.|+..+...
T Consensus 191 DGr~lkatYGTT 202 (480)
T COG5175 191 DGRVLKATYGTT 202 (480)
T ss_pred cCceEeeecCch
Confidence 999999998753
No 157
>KOG1995|consensus
Probab=98.12 E-value=2.1e-06 Score=73.48 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=75.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCcee--------EEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQ--------NVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR 341 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr 341 (356)
...+|+|.+||..+++++|.++|.++|.|. .+.|.++.+|+.+++-|.|.|++...|+.|+..++++.+.|.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456899999999999999999999999874 366778889999999999999999999999999999999999
Q ss_pred eEEEEEecCCC
Q psy9313 342 LLQVSFKTHKP 352 (356)
Q Consensus 342 ~l~v~~a~~~~ 352 (356)
.|.|.+|..++
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99999987654
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.03 E-value=1.2e-05 Score=58.29 Aligned_cols=70 Identities=24% Similarity=0.426 Sum_probs=43.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc-----eeCCeEEEE
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL-----KLQNKSIKV 100 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~-----~~~g~~l~v 100 (356)
.+.|.|.|++..++.++|+++|+.||.|..|.+.+... .|||-|.+.++|+.|+..+.-. .+.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 36799999999999999999999999999888876543 8999999999999999866433 445554444
Q ss_pred E
Q psy9313 101 S 101 (356)
Q Consensus 101 ~ 101 (356)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 4
No 159
>KOG2314|consensus
Probab=97.92 E-value=3.5e-05 Score=69.75 Aligned_cols=77 Identities=25% Similarity=0.264 Sum_probs=63.6
Q ss_pred CCcEEEEecCCC--CCcH----HHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC-Cee
Q psy9313 270 SGWCIFVYNLAP--ETED----NVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG-DRL 342 (356)
Q Consensus 270 ~~~~l~V~nlp~--~~t~----~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-gr~ 342 (356)
-..+|.|.|+|- .... .-|..+|+++|.+....++.++++| ++|+.|++|.+..+|..|+..|||+.|+ +++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 345799999983 2223 3455679999999999999998766 8999999999999999999999999988 677
Q ss_pred EEEEE
Q psy9313 343 LQVSF 347 (356)
Q Consensus 343 l~v~~ 347 (356)
+.|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 77754
No 160
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.92 E-value=2.8e-05 Score=65.81 Aligned_cols=79 Identities=20% Similarity=0.472 Sum_probs=61.9
Q ss_pred EEEEecCCCCCcHHH----H--HHhhcCCCceeEEEEeeCCCCCCc-ce--EEEEEEccHHHHHHHHHHhCCcccCCeeE
Q psy9313 273 CIFVYNLAPETEDNV----L--WQLFGPFGAVQNVKVVRDPQTYKC-KG--FGFVCMTNYDEAVFAIQSLNGYALGDRLL 343 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~----L--~~~f~~~G~v~~v~i~~~~~~~~~-~g--~afV~f~~~~~A~~a~~~l~g~~l~gr~l 343 (356)
-+||.+||..+-.++ | .++|.+||.|..|.+-+.-.+..+ .+ -+||+|.+.++|.+|+...+|..++||.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 489999998877666 2 468999999998777544211111 12 24999999999999999999999999999
Q ss_pred EEEEecCC
Q psy9313 344 QVSFKTHK 351 (356)
Q Consensus 344 ~v~~a~~~ 351 (356)
+..|...|
T Consensus 196 katYGTTK 203 (480)
T COG5175 196 KATYGTTK 203 (480)
T ss_pred eeecCchH
Confidence 99998654
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.88 E-value=6.1e-05 Score=53.63 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=51.7
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEE-EeeCC------CCCCcceEEEEEEccHHHHHHHHHHhCCcccCCee-
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVK-VVRDP------QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRL- 342 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~-i~~~~------~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~- 342 (356)
.+.|.|.+.|.. ....+.++|++||.|.+.. +.++. .......+.-|+|+++.+|++|++ -||..|.|..
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 346999999988 5667889999999998764 10000 000125689999999999999999 7999999854
Q ss_pred EEEEEe
Q psy9313 343 LQVSFK 348 (356)
Q Consensus 343 l~v~~a 348 (356)
+-|.|.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 447766
No 162
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.76 E-value=6.3e-05 Score=46.98 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=43.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHH
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 85 (356)
++.|-|.|.|++..+. +..+|..+|+|..+.+.... .+.||.|.+..+|.+|+
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~------~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST------NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC------cEEEEEECCHHHHHhhC
Confidence 3678899999886654 55688999999999876332 38999999999999985
No 163
>KOG3152|consensus
Probab=97.73 E-value=2e-05 Score=64.32 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=60.6
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCC--------CCcc----eEEEEEEccHHHHHHHHHHhCCcccCC
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT--------YKCK----GFGFVCMTNYDEAVFAIQSLNGYALGD 340 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~--------~~~~----g~afV~f~~~~~A~~a~~~l~g~~l~g 340 (356)
.||+.+||+.+....|+++|+.||.|-+|.+-+...+ |..+ .-|.|+|.+-..|.++...|||.+|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 7999999999999999999999999999988766544 2222 237899999999999999999999998
Q ss_pred ee
Q psy9313 341 RL 342 (356)
Q Consensus 341 r~ 342 (356)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 64
No 164
>KOG4849|consensus
Probab=97.67 E-value=4.1e-05 Score=65.18 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=71.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC--CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVG--EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g--~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
..-.+||+||-..+|.+||.+++...| .+.+++++.++.+|.++|||.|..-+....++.++.|....|.|+.-.|..
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 345689999999999999999999988 588899999999999999999999999999999999999999998777764
Q ss_pred c
Q psy9313 103 A 103 (356)
Q Consensus 103 ~ 103 (356)
.
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 4
No 165
>KOG3152|consensus
Probab=97.64 E-value=4.7e-05 Score=62.20 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=62.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCC--------Cc----cceEEEEEecCHHHHHHHHHHhCCce
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--------AQ----SLGYGFVNYYRTEDAERAIIELNGLK 92 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~--------~~----~~g~afV~f~~~~~A~~a~~~l~g~~ 92 (356)
..-.||+++||+.+...-|+++|+.||.|-.|.+-+...+ |. ...-++|+|.+...|+.+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5578999999999999999999999999999988776544 22 22347799999999999999999999
Q ss_pred eCCeE
Q psy9313 93 LQNKS 97 (356)
Q Consensus 93 ~~g~~ 97 (356)
|.|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 166
>KOG0115|consensus
Probab=97.62 E-value=0.00017 Score=59.08 Aligned_cols=88 Identities=30% Similarity=0.365 Sum_probs=76.8
Q ss_pred HHHHHHHHhCCceeCCeEEEEEecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccC
Q psy9313 80 DAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159 (356)
Q Consensus 80 ~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~ 159 (356)
-|..|-..|++....|+.++|.++.. ..|||.||...++.+.+.+.|+.||+|..-.+..|...
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~--------- 69 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRG--------- 69 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccc---------
Confidence 35556667899999999999999973 56999999999999999999999999998888777655
Q ss_pred CCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 160 ~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
...+.++|+|...-.|.+|...+.
T Consensus 70 -------k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 70 -------KPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred -------cccccchhhhhcchhHHHHHHHhc
Confidence 568999999999999999998873
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.60 E-value=0.00016 Score=45.20 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=42.4
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHH
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~ 330 (356)
+.|.|.|.+.+.. +.+..+|..||.|..+.+... ..+.+|.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 4688999997755 556668999999999888632 558999999999999985
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.59 E-value=0.00033 Score=49.90 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=52.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecC-------CCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK-------TTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~-------~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
..+.|.|-|.|+. .-..|.+.|++||.|.+..-.... .......+..|.|.+..+|.+|| ..||..+.|..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcE
Confidence 4567999999998 667799999999998877400000 00112248999999999999999 67999998865
Q ss_pred E-EEEecC
Q psy9313 98 I-KVSYAR 104 (356)
Q Consensus 98 l-~v~~~~ 104 (356)
+ -|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4 466654
No 169
>KOG1996|consensus
Probab=97.51 E-value=0.0003 Score=58.62 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=60.4
Q ss_pred CCceEEEcCCCC--CCC---HHHHHHHhhccCCceeEEEEecCCCCccc-eEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 25 QNSNLIVNYVPQ--TMT---QEELQHLFSSVGEVESCKLIRDKTTAQSL-GYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 25 ~~~~l~v~nlp~--~~t---e~~l~~~f~~~g~i~~i~~~~~~~~~~~~-g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
++..|.++|.=. .+. ++++++.+.+||.|..|.|+......... --.||+|...++|.+|+-.|||.+|.||.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 344455555422 222 46778899999999999998876543322 237999999999999999999999999999
Q ss_pred EEEecC
Q psy9313 99 KVSYAR 104 (356)
Q Consensus 99 ~v~~~~ 104 (356)
...+-.
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 887643
No 170
>KOG1855|consensus
Probab=97.47 E-value=0.0001 Score=64.67 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=57.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeC---CCCC--Cc--------ceEEEEEEccHHHHHHHHHHhCCc
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD---PQTY--KC--------KGFGFVCMTNYDEAVFAIQSLNGY 336 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~---~~~~--~~--------~g~afV~f~~~~~A~~a~~~l~g~ 336 (356)
++++|.+.|||.+-.-+.|.++|+.+|.|..|+|+.. +.+. .+ +-+|+|+|++.+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6789999999998888999999999999999999876 4432 22 356999999999999999988653
No 171
>KOG4849|consensus
Probab=97.45 E-value=0.00011 Score=62.56 Aligned_cols=79 Identities=18% Similarity=0.268 Sum_probs=68.0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHhhcCCC--ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEE
Q psy9313 267 LHGSGWCIFVYNLAPETEDNVLWQLFGPFG--AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344 (356)
Q Consensus 267 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~ 344 (356)
..+...++||+||-|.+|++||.+.++..| .+..++++.++.+|+++|||+|...+..+..+.++.|-.+.|+|..-.
T Consensus 76 ~~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~ 155 (498)
T KOG4849|consen 76 SEGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPT 155 (498)
T ss_pred ccCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCe
Confidence 334567899999999999999999998877 466778888888999999999999999999999999999999986444
Q ss_pred E
Q psy9313 345 V 345 (356)
Q Consensus 345 v 345 (356)
|
T Consensus 156 V 156 (498)
T KOG4849|consen 156 V 156 (498)
T ss_pred e
Confidence 3
No 172
>KOG1996|consensus
Probab=97.40 E-value=0.00049 Score=57.41 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=60.6
Q ss_pred CCcEEEEecC--CCCC---cHHHHHHhhcCCCceeEEEEeeCCCCCCcc-eEEEEEEccHHHHHHHHHHhCCcccCCeeE
Q psy9313 270 SGWCIFVYNL--APET---EDNVLWQLFGPFGAVQNVKVVRDPQTYKCK-GFGFVCMTNYDEAVFAIQSLNGYALGDRLL 343 (356)
Q Consensus 270 ~~~~l~V~nl--p~~~---t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~-g~afV~f~~~~~A~~a~~~l~g~~l~gr~l 343 (356)
+++.|.++|+ +..+ -++++++.+++||.|..|.|...+..-.-. --.||+|...++|.+|+-.|||+.|+||.+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v 359 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVV 359 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceee
Confidence 3445666666 2233 347788899999999999988775321111 237999999999999999999999999999
Q ss_pred EEEEec
Q psy9313 344 QVSFKT 349 (356)
Q Consensus 344 ~v~~a~ 349 (356)
..-|..
T Consensus 360 ~A~Fyn 365 (378)
T KOG1996|consen 360 SACFYN 365 (378)
T ss_pred eheecc
Confidence 887754
No 173
>KOG0115|consensus
Probab=97.33 E-value=0.00077 Score=55.33 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=54.8
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhC
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN 334 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 334 (356)
.|+|.|++.-++.+.|.+-|+.||.|....++.|. .+++.+-++|.|.....|.+|++...
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 59999999999999999999999999988777774 47888999999999999999998774
No 174
>KOG1995|consensus
Probab=97.30 E-value=0.00041 Score=59.77 Aligned_cols=84 Identities=25% Similarity=0.333 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCc--------eeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeC
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEV--------ESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQ 94 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i--------~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 94 (356)
.....+|||-+||..+++.+|.++|.++|.| -.|.+-.++.|+..++-|.|.|.+...|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 5667899999999999999999999999865 34677778889999999999999999999999999999999
Q ss_pred CeEEEEEecCCC
Q psy9313 95 NKSIKVSYARPS 106 (356)
Q Consensus 95 g~~l~v~~~~~~ 106 (356)
+..|+|..+...
T Consensus 143 gn~ikvs~a~~r 154 (351)
T KOG1995|consen 143 GNTIKVSLAERR 154 (351)
T ss_pred CCCchhhhhhhc
Confidence 999988877643
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.27 E-value=0.002 Score=48.78 Aligned_cols=72 Identities=26% Similarity=0.347 Sum_probs=52.3
Q ss_pred CCcEEEEecCC-----CCCcH----HHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC
Q psy9313 270 SGWCIFVYNLA-----PETED----NVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340 (356)
Q Consensus 270 ~~~~l~V~nlp-----~~~t~----~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 340 (356)
+..||.|.-.. ...-. .+|.+.|..||.+.-+++.-+ .-+|+|.+-.+|.+|+. |+|..+.|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 33467776554 11222 467788999999887776554 48999999999999999 99999999
Q ss_pred eeEEEEEecC
Q psy9313 341 RLLQVSFKTH 350 (356)
Q Consensus 341 r~l~v~~a~~ 350 (356)
+.|+|+...+
T Consensus 97 ~~l~i~LKtp 106 (146)
T PF08952_consen 97 RTLKIRLKTP 106 (146)
T ss_dssp EEEEEEE---
T ss_pred EEEEEEeCCc
Confidence 9999998764
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.26 E-value=0.0015 Score=49.51 Aligned_cols=79 Identities=19% Similarity=0.394 Sum_probs=52.7
Q ss_pred CcCCCCceEEEcCCCC------CCCH---HHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc
Q psy9313 21 DVNEQNSNLIVNYVPQ------TMTQ---EELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL 91 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~------~~te---~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 91 (356)
..+++..||.|.=+.+ ...+ .+|.+.|..||.+.-|+++-+ .-+|+|.+-++|-+|+ .++|.
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~dg~ 92 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLDGI 92 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGCCS
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccCCc
Confidence 4566677777765551 1222 367788999998887776554 5799999999999999 89999
Q ss_pred eeCCeEEEEEecCCCcc
Q psy9313 92 KLQNKSIKVSYARPSSE 108 (356)
Q Consensus 92 ~~~g~~l~v~~~~~~~~ 108 (356)
.+.|+.|+|....|...
T Consensus 93 ~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 93 QVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp EETTEEEEEEE------
T ss_pred EECCEEEEEEeCCccHH
Confidence 99999999998877543
No 177
>KOG2314|consensus
Probab=97.25 E-value=0.00068 Score=61.68 Aligned_cols=79 Identities=28% Similarity=0.411 Sum_probs=63.4
Q ss_pred CCCCceEEEcCCCCCC--CH----HHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCcee-CC
Q psy9313 23 NEQNSNLIVNYVPQTM--TQ----EELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL-QN 95 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~--te----~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~-~g 95 (356)
+--.+.|.|.|+|--= .- .-|.++|+++|++....++.+.. |..+||.|++|.+..+|+.|++.|||+.| .+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 4556789999998532 12 23457899999999999998875 44999999999999999999999999987 55
Q ss_pred eEEEEEe
Q psy9313 96 KSIKVSY 102 (356)
Q Consensus 96 ~~l~v~~ 102 (356)
+++.|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 6776654
No 178
>KOG1855|consensus
Probab=97.24 E-value=0.00065 Score=59.76 Aligned_cols=97 Identities=22% Similarity=0.267 Sum_probs=66.6
Q ss_pred CCeEEEEEecCCCc--ccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCC--Ccc
Q psy9313 94 QNKSIKVSYARPSS--EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ--ISK 169 (356)
Q Consensus 94 ~g~~l~v~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~--~~~ 169 (356)
.|++++-.-.-|.. +...+++|.+.|||.+-..+.|.++|+.+|.|..|.|+.... +.....+.+...- ..+
T Consensus 211 DgkKVrRisPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPga----ip~d~r~~~~~~~~~~tk 286 (484)
T KOG1855|consen 211 DGKKVRRISPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGA----IPEDVRGFPKKYFELQTK 286 (484)
T ss_pred CCceeeecCCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCC----CCcccccCCccchhhhhh
Confidence 34444433333332 335789999999999988899999999999999999987621 1111122221111 126
Q ss_pred cEEEEEeCCHHHHHHHHHHhcCCCc
Q psy9313 170 GIGFVRFNQHIEAEHAMQELNGTIP 194 (356)
Q Consensus 170 g~afV~f~~~~~a~~a~~~~~~~~~ 194 (356)
-+|+|+|...+.|.+|.+.++....
T Consensus 287 ~~AlvEye~~~~A~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 287 ECALVEYEEVEAARKARELLNPEQN 311 (484)
T ss_pred hhhhhhhhhhHHHHHHHHhhchhhh
Confidence 7899999999999999998765443
No 179
>KOG2202|consensus
Probab=97.16 E-value=0.00016 Score=59.31 Aligned_cols=63 Identities=14% Similarity=0.263 Sum_probs=52.6
Q ss_pred HHHHHhhc-CCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 286 NVLWQLFG-PFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 286 ~~L~~~f~-~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+++...|+ +||.|..+.+..+... .-.|-++|.|...++|.+|++.|||..+.|+.|+..+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~-hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGD-HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccch-hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 55666666 9999999877665432 347889999999999999999999999999999998854
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.06 E-value=0.0042 Score=39.75 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=45.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcc---CCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHh
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSV---GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~---g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 88 (356)
..+|+|+|+ ..++.+||+.+|..| .....|.++-|. -|=|.|.+.+.|.+||..|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 357999999 568999999999999 135678888886 5889999999999999653
No 181
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.01 E-value=0.0039 Score=46.51 Aligned_cols=72 Identities=19% Similarity=0.296 Sum_probs=54.6
Q ss_pred CCcEEEEe----cCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 270 SGWCIFVY----NLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 270 ~~~~l~V~----nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
+-.||.|+ |+...-+...+.+.++.||+|.+|...- +.-|.|.|.+..+|.+|+.+++. ...|..++.
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 44578886 4544444556666688999999998733 45699999999999999998887 566788888
Q ss_pred EEec
Q psy9313 346 SFKT 349 (356)
Q Consensus 346 ~~a~ 349 (356)
+|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7743
No 182
>KOG2416|consensus
Probab=96.83 E-value=0.0014 Score=60.11 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=63.4
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhcc-CCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCcee---CCe
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSV-GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL---QNK 96 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~-g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~---~g~ 96 (356)
...+.+..|||.||-.-.|.-+|+.++..- |.|++.+|-+ -+..|||.|.+.++|......|+|..| +++
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 367789999999999999999999999964 5677764422 235899999999999999999999987 456
Q ss_pred EEEEEecC
Q psy9313 97 SIKVSYAR 104 (356)
Q Consensus 97 ~l~v~~~~ 104 (356)
.|-+.|..
T Consensus 513 ~L~adf~~ 520 (718)
T KOG2416|consen 513 HLIADFVR 520 (718)
T ss_pred eeEeeecc
Confidence 66666654
No 183
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.82 E-value=0.0099 Score=40.18 Aligned_cols=56 Identities=20% Similarity=0.367 Sum_probs=42.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNG 90 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 90 (356)
.-..+|. .|..+...||.++|+.||.|. |.++.+- -|||...+.+.|..++..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 3455665 999999999999999999866 7676663 799999999999999977753
No 184
>KOG2202|consensus
Probab=96.81 E-value=0.0007 Score=55.66 Aligned_cols=62 Identities=21% Similarity=0.331 Sum_probs=51.2
Q ss_pred HHHHHhh-ccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 42 ELQHLFS-SVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 42 ~l~~~f~-~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
||...|. +||.|+++.+..+. .....|-+||.|..+++|.+|+..|||..+.|++|...++.
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3333444 89999999776543 45678899999999999999999999999999999988764
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.74 E-value=0.0022 Score=51.34 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=46.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhc-cCCc---eeEEEEec--CCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSS-VGEV---ESCKLIRD--KTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~-~g~i---~~i~~~~~--~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
....+.|-||+||+.+||+++++.++. ++.- ..+.-... ........-|||.|.+.+++......++|+.|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 345679999999999999999997777 5544 22221111 1111234569999999999999999999988744
No 186
>KOG2416|consensus
Probab=96.56 E-value=0.0023 Score=58.79 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=63.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcC-CCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC---CeeE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGP-FGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG---DRLL 343 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~---gr~l 343 (356)
...+..|+|.||-.-+|.-.|+.+++. .|.|... +.| +-+..|||.|.+.++|.....+|||..+. ++.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 346789999999999999999999995 5566665 333 23567999999999999999999998765 6899
Q ss_pred EEEEecC
Q psy9313 344 QVSFKTH 350 (356)
Q Consensus 344 ~v~~a~~ 350 (356)
.+.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999764
No 187
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.36 E-value=0.054 Score=39.46 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=48.3
Q ss_pred ceEEEcCCCCCC-CHHHHHHHhhccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 27 SNLIVNYVPQTM-TQEELQHLFSSVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 27 ~~l~v~nlp~~~-te~~l~~~f~~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+.|.+--.|+.+ +-++|..+...+- .|..++++++. ..++-.+.++|.+.++|......+||..+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 444444455555 5566666655553 57788888864 3467799999999999999999999988743
No 188
>KOG2068|consensus
Probab=96.32 E-value=0.0018 Score=55.58 Aligned_cols=80 Identities=20% Similarity=0.383 Sum_probs=62.3
Q ss_pred EEEEecCCCCCcHHHHHH---hhcCCCceeEEEEeeCCC--CCC-cceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 273 CIFVYNLAPETEDNVLWQ---LFGPFGAVQNVKVVRDPQ--TYK-CKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~---~f~~~G~v~~v~i~~~~~--~~~-~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
-+||.+|+...-.+++.+ +|.+||.|..|.+..++. .+. ...-++|+|...++|..|++..+|..++|+.|...
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 378888887666555543 689999999999888762 111 11238999999999999999999999999998888
Q ss_pred EecCCC
Q psy9313 347 FKTHKP 352 (356)
Q Consensus 347 ~a~~~~ 352 (356)
++..+.
T Consensus 159 ~gttky 164 (327)
T KOG2068|consen 159 LGTTKY 164 (327)
T ss_pred hCCCcc
Confidence 877653
No 189
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.21 E-value=0.027 Score=36.04 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=43.1
Q ss_pred EEEEecCCCCCcHHHHHHhhcCC---CceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHh
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPF---GAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~---G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 333 (356)
.|+|+|+.. ++.+||+.+|..| ....+|..+-|. -|=|.|.+.+.|.+|+.+|
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 599999854 7888999999998 134588887773 3889999999999999865
No 190
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.00 E-value=0.044 Score=41.07 Aligned_cols=77 Identities=17% Similarity=0.305 Sum_probs=59.6
Q ss_pred CcCCCCceEEEcCCCCCCCH-HHHH---HHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQ-EELQ---HLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te-~~l~---~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
..+.+..||-|+=|...+.. +|++ ..++.||+|.+|...-. . .|.|.|.+..+|-+|+.++.. ...|.
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----q--savVvF~d~~SAC~Av~Af~s-~~pgt 152 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----Q--SAVVVFKDITSACKAVSAFQS-RAPGT 152 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----c--eEEEEehhhHHHHHHHHhhcC-CCCCc
Confidence 34778889999888777643 4554 56788999999987432 2 699999999999999987765 56788
Q ss_pred EEEEEecCC
Q psy9313 97 SIKVSYARP 105 (356)
Q Consensus 97 ~l~v~~~~~ 105 (356)
.+.+.|..+
T Consensus 153 m~qCsWqqr 161 (166)
T PF15023_consen 153 MFQCSWQQR 161 (166)
T ss_pred eEEeecccc
Confidence 888888653
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.94 E-value=0.29 Score=35.72 Aligned_cols=74 Identities=15% Similarity=0.205 Sum_probs=52.3
Q ss_pred EEEEecCCCCCcHHHHHHhhcCC-CceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC---eeEEEEEe
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPF-GAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD---RLLQVSFK 348 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~-G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g---r~l~v~~a 348 (356)
.+.+-..|+-++.++|..+.+.+ ..|..++|+++.. .++=-+.+.|.+.++|..-...+||+.+.. ..++|-|-
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 34444455666667777666665 4677889998743 234468999999999999999999987663 45555544
No 192
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.79 E-value=0.023 Score=45.66 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=46.5
Q ss_pred cHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhC--CcccCCeeEEEEEecC
Q psy9313 284 EDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN--GYALGDRLLQVSFKTH 350 (356)
Q Consensus 284 t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~l~gr~l~v~~a~~ 350 (356)
..+.|+++|..|+.+.....++. -+-..|.|.+.++|.+|...|+ +..+.|..+++.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 45789999999999888777776 3459999999999999999999 9999999999999854
No 193
>KOG2135|consensus
Probab=95.55 E-value=0.011 Score=52.94 Aligned_cols=83 Identities=23% Similarity=0.294 Sum_probs=69.3
Q ss_pred CCCCcCCCCceEEEcCCCCCC-CHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTM-TQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~-te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
.........|.|-+.-.|..+ +-.+|..+|.+||.|..|.+-.. .-.|.|+|.+..+|-.|. ...+..|.++
T Consensus 364 v~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~-~s~~avlnnr 436 (526)
T KOG2135|consen 364 VPGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAY-ASHGAVLNNR 436 (526)
T ss_pred CCcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchh-ccccceecCc
Confidence 344556778889999999887 56899999999999999977433 237999999999998887 6789999999
Q ss_pred EEEEEecCCCc
Q psy9313 97 SIKVSYARPSS 107 (356)
Q Consensus 97 ~l~v~~~~~~~ 107 (356)
.|++.|..+..
T Consensus 437 ~iKl~whnps~ 447 (526)
T KOG2135|consen 437 FIKLFWHNPSP 447 (526)
T ss_pred eeEEEEecCCc
Confidence 99999998854
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.50 E-value=0.061 Score=43.07 Aligned_cols=82 Identities=13% Similarity=0.251 Sum_probs=52.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcC-CCce---eEEEEeeCCCCCC--cceEEEEEEccHHHHHHHHHHhCCcccCC---
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGP-FGAV---QNVKVVRDPQTYK--CKGFGFVCMTNYDEAVFAIQSLNGYALGD--- 340 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~-~G~v---~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~a~~~l~g~~l~g--- 340 (356)
....|.|++||+.+|++++++.++. ++.- .++.-........ ....|+|.|.+.+++..-.+.++|+.+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3457999999999999999998887 6655 3333222221111 13469999999999999999999976553
Q ss_pred --eeEEEEEecCC
Q psy9313 341 --RLLQVSFKTHK 351 (356)
Q Consensus 341 --r~l~v~~a~~~ 351 (356)
....|.||.-.
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 45667777643
No 195
>KOG2591|consensus
Probab=95.33 E-value=0.031 Score=51.28 Aligned_cols=71 Identities=24% Similarity=0.377 Sum_probs=54.9
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhc--cCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCC--ceeCCeE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSS--VGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNG--LKLQNKS 97 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~--~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~~~g~~ 97 (356)
.....|.|.|+.||..+..++++-+|+. +-++.+|.+--+. -+||+|.+..||+.|.+.|.- ..|-|+.
T Consensus 171 p~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 171 PNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred cCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3567889999999999999999999987 3466777665443 489999999999999987653 2355655
Q ss_pred EE
Q psy9313 98 IK 99 (356)
Q Consensus 98 l~ 99 (356)
|.
T Consensus 244 Im 245 (684)
T KOG2591|consen 244 IM 245 (684)
T ss_pred hh
Confidence 53
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.17 E-value=0.15 Score=34.65 Aligned_cols=56 Identities=25% Similarity=0.468 Sum_probs=41.6
Q ss_pred ccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 112 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
...||--.+|..+-..||.++|+.||.|. |..+- -.-|||.....+.|..++..++
T Consensus 8 RdHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~----------------------dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWIN----------------------DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE--TT--HHHHHHHCCCCCCEE-EEEEC----------------------TTEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEc----------------------CCcEEEEeecHHHHHHHHHHhc
Confidence 34566556999999999999999999985 33332 3579999999999999998775
No 197
>KOG2068|consensus
Probab=95.13 E-value=0.0092 Score=51.36 Aligned_cols=84 Identities=19% Similarity=0.328 Sum_probs=65.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHH---HHhhccCCceeEEEEecCC--CCc-cceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQ---HLFSSVGEVESCKLIRDKT--TAQ-SLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~---~~f~~~g~i~~i~~~~~~~--~~~-~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
.-...-+||-+|+..+-.+.+. ++|.+||.|..|.+.++.. .+. ...-+||+|...++|..|+...+|..+.|+
T Consensus 74 vVqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~ 153 (327)
T KOG2068|consen 74 VVQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR 153 (327)
T ss_pred hhhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh
Confidence 3456788999999887655554 5999999999998887652 111 112389999999999999999999999999
Q ss_pred EEEEEecCCC
Q psy9313 97 SIKVSYARPS 106 (356)
Q Consensus 97 ~l~v~~~~~~ 106 (356)
.+++.+..++
T Consensus 154 ~lka~~gttk 163 (327)
T KOG2068|consen 154 ALKASLGTTK 163 (327)
T ss_pred hhHHhhCCCc
Confidence 9887776543
No 198
>KOG0804|consensus
Probab=94.95 E-value=0.12 Score=46.45 Aligned_cols=68 Identities=21% Similarity=0.327 Sum_probs=60.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
++.|.|-.+|..++..||..|+..+- .|.+|+++++. ...+-.+.|.|.+.++|..+...+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 89999999999999999999998875 68999999964 3456789999999999999999999988744
No 199
>KOG4285|consensus
Probab=94.83 E-value=0.089 Score=44.63 Aligned_cols=63 Identities=16% Similarity=0.250 Sum_probs=50.0
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCee
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRL 342 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~ 342 (356)
.=|.|.++|..- -.-|..+|++||.|.+...... -.+-.|.|.+..+|++|+. .||..|+|..
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 447888888763 3558889999999987665422 3589999999999999999 6999888744
No 200
>KOG2135|consensus
Probab=94.69 E-value=0.019 Score=51.51 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=61.4
Q ss_pred CCcEEEEecCCCCC-cHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 270 SGWCIFVYNLAPET-EDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 270 ~~~~l~V~nlp~~~-t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
..+.+-+.-.|... +.++|..+|.+||.|..|.+-+.. -.|.|+|.+..+|-.|.. .++..|+||-|.|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 34556666666544 568999999999999999886653 359999999999988887 7999999999999998
Q ss_pred cCC
Q psy9313 349 THK 351 (356)
Q Consensus 349 ~~~ 351 (356)
++.
T Consensus 444 nps 446 (526)
T KOG2135|consen 444 NPS 446 (526)
T ss_pred cCC
Confidence 763
No 201
>KOG0804|consensus
Probab=94.57 E-value=0.2 Score=44.99 Aligned_cols=69 Identities=13% Similarity=0.223 Sum_probs=58.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 340 (356)
+++.|.|-.+|..+|-.||..|+..+- .|.+++++++... .+=.+.|.|.+.++|..-.+.+||+.|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 488999999999999999999998764 6789999997432 23358999999999999999999988764
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.92 E-value=0.18 Score=35.00 Aligned_cols=63 Identities=16% Similarity=0.353 Sum_probs=45.3
Q ss_pred EEEEecCHHHHHHHHHHhCCc--eeCCeEEEEEecCCC---------cccccccceEEcCCCCCCCHHHHHHhhc
Q psy9313 71 GFVNYYRTEDAERAIIELNGL--KLQNKSIKVSYARPS---------SEAIKRANLYVSGLPKHMTQEDLENLFR 134 (356)
Q Consensus 71 afV~f~~~~~A~~a~~~l~g~--~~~g~~l~v~~~~~~---------~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 134 (356)
|.|+|..+.-|++.++ +..+ .+.++.+.|....-. ......++|.+.|||..+++++|++..+
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 6899999999999994 4443 356666666544211 1234567899999999999999997554
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.90 E-value=0.22 Score=40.03 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=46.3
Q ss_pred CHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhC--CceeCCeEEEEEecCCC
Q psy9313 39 TQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELN--GLKLQNKSIKVSYARPS 106 (356)
Q Consensus 39 te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~l~v~~~~~~ 106 (356)
....|+++|..++.+.++...+.. +=..|.|.+.++|..|...|+ +..+.|..+++.++.+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 347899999999999888877754 257899999999999999988 89999999999988543
No 204
>KOG2253|consensus
Probab=93.89 E-value=0.074 Score=50.01 Aligned_cols=73 Identities=18% Similarity=0.130 Sum_probs=62.1
Q ss_pred CCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 266 SLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 266 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
...++..++||+|+.+.+.++-++.+...+|.|.+++... |||..|..+..+.+|+..++-..++|..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 3344667899999999999999999999999988766533 8999999999999999999998898877765
Q ss_pred EE
Q psy9313 346 SF 347 (356)
Q Consensus 346 ~~ 347 (356)
.-
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 43
No 205
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.57 E-value=0.37 Score=32.41 Aligned_cols=59 Identities=20% Similarity=0.394 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHhhccC-----CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 36 QTMTQEELQHLFSSVG-----EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 36 ~~~te~~l~~~f~~~g-----~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
..++..+|..++...+ .|-.|.+..+ |+||+-... .|..++..|++..+.|+.+.|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3478899999998875 3556666543 889988765 788888899999999999999864
No 206
>KOG4574|consensus
Probab=93.49 E-value=0.045 Score=52.79 Aligned_cols=70 Identities=24% Similarity=0.374 Sum_probs=59.4
Q ss_pred ecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC--CeeEEEEEecCCC
Q psy9313 277 YNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG--DRLLQVSFKTHKP 352 (356)
Q Consensus 277 ~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~--gr~l~v~~a~~~~ 352 (356)
.|.+-..+-..|..+|++||.|.+.+..++. ..|.|+|.+.+.|..|+++++|+.+. |-..+|.||+.-+
T Consensus 304 ~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 304 ENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 3445566778899999999999999998884 45999999999999999999998755 8899999998654
No 207
>KOG2591|consensus
Probab=93.20 E-value=0.21 Score=46.07 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=54.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcC--CCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC--cccCCeeEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGP--FGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG--YALGDRLLQV 345 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~l~gr~l~v 345 (356)
.-|.|+++-||..+-.|+++.+|+. +..+.+|.+-.+. -=||+|++..||+.|...|.. +.|-|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578899999999999999999975 6678888875542 269999999999999988754 3455655543
No 208
>KOG2318|consensus
Probab=92.84 E-value=0.47 Score=44.13 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=64.1
Q ss_pred CCCCCcEEEEecCCC-CCcHHHHHHhhcCC----CceeEEEEeeCCC----------CCC--------------------
Q psy9313 267 LHGSGWCIFVYNLAP-ETEDNVLWQLFGPF----GAVQNVKVVRDPQ----------TYK-------------------- 311 (356)
Q Consensus 267 ~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~----G~v~~v~i~~~~~----------~~~-------------------- 311 (356)
....+.+|-|.||.| .+...||.-+|+.| |.|.+|.|.+..- .|-
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 345778999999997 56789999998766 5899999875311 111
Q ss_pred -----------------cceEEEEEEccHHHHHHHHHHhCCcccC--CeeEEEEEec
Q psy9313 312 -----------------CKGFGFVCMTNYDEAVFAIQSLNGYALG--DRLLQVSFKT 349 (356)
Q Consensus 312 -----------------~~g~afV~f~~~~~A~~a~~~l~g~~l~--gr~l~v~~a~ 349 (356)
..=||.|+|++...|.+++...+|..|. |..+.++|-.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 1136999999999999999999999988 5677777754
No 209
>KOG4285|consensus
Probab=92.42 E-value=0.47 Score=40.45 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=52.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE-EEEe
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI-KVSY 102 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l-~v~~ 102 (356)
..=|-|-+.|+.- -.-|..+|+++|.|++.....+ | -+-+|.|.+..+|++|| ..||+.|.|..+ -|..
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~~n---g---NwMhirYssr~~A~KAL-skng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTPSN---G---NWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecCCC---C---ceEEEEecchhHHHHhh-hhcCeeeccceEEeeee
Confidence 5567778887764 3457789999999988865422 2 38899999999999999 669998877543 3443
No 210
>KOG4574|consensus
Probab=92.00 E-value=0.12 Score=50.15 Aligned_cols=71 Identities=25% Similarity=0.327 Sum_probs=59.5
Q ss_pred EEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCcee--CCeEEEEEecCCC
Q psy9313 30 IVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL--QNKSIKVSYARPS 106 (356)
Q Consensus 30 ~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~--~g~~l~v~~~~~~ 106 (356)
++.|.+-..+-.-|.-+|.+||.|.+++..++.. +|.|+|.+.+.|..|+..++|..+ -|-+.+|.++++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3445555667778889999999999999988864 899999999999999999999874 6778888888754
No 211
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.32 E-value=0.21 Score=34.63 Aligned_cols=23 Identities=13% Similarity=0.188 Sum_probs=19.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHhh
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLF 292 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f 292 (356)
+.++|.|.|||....+++|++.+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeE
Confidence 55689999999999999998754
No 212
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.05 E-value=1 Score=30.21 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=36.2
Q ss_pred CCCcHHHHHHhhcCCCc-----eeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 281 PETEDNVLWQLFGPFGA-----VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 281 ~~~t~~~L~~~f~~~G~-----v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
..++..+|..++...+. |-.+.|..+ |+||+-.. +.|..+++.|++..+.|+.+.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 56788889988877654 456666443 79999886 5788999999999999999999865
No 213
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.53 E-value=10 Score=32.54 Aligned_cols=203 Identities=12% Similarity=0.154 Sum_probs=110.7
Q ss_pred cccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHH--
Q psy9313 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH-- 184 (356)
Q Consensus 107 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~-- 184 (356)
.+....|.|.+.|+..+++--.+...|-+||+|++|.++.+..... -...+........+-|-+.+.+-.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~--------d~~~~d~~~~SilLSFlsr~~CLdFY 81 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPS--------DDYNDDKNNQSILLSFLSREICLDFY 81 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCccc--------ccccccccceEEEEeeechHHHHHHH
Confidence 3445678899999999999999999999999999999998752110 011112344667788888776643
Q ss_pred --HHHHhcCC--CcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCC
Q psy9313 185 --AMQELNGT--IPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNS 260 (356)
Q Consensus 185 --a~~~~~~~--~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (356)
.++.+... .+.. ..+.+.+..-............. ...... ...
T Consensus 82 NnvLQrLsEfK~~L~S--~~L~lsFV~l~y~~~~~~~~~~~----~~~~~~--------------------------~~~ 129 (309)
T PF10567_consen 82 NNVLQRLSEFKTKLKS--ESLTLSFVSLNYQKKTDPNDEEA----DFSDYL--------------------------VAS 129 (309)
T ss_pred HHHHHHHHHHHHhcCC--cceeEEEEEEecccccccccccc----chhhHH--------------------------hhh
Confidence 23333332 2333 55666665432111110000000 000000 000
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCcHHHHHH---hhcCCCc----eeEEEEeeC--CCCCCcceEEEEEEccHHHHHHHHH
Q psy9313 261 MLPPKSLHGSGWCIFVYNLAPETEDNVLWQ---LFGPFGA----VQNVKVVRD--PQTYKCKGFGFVCMTNYDEAVFAIQ 331 (356)
Q Consensus 261 ~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~---~f~~~G~----v~~v~i~~~--~~~~~~~g~afV~f~~~~~A~~a~~ 331 (356)
..-.....+.++.|.|.=-.....++-+.+ ++..-+. +++|.++-- +...-+..||.++|-+..-|..+++
T Consensus 130 L~~~i~~~gATRSl~IeF~~~~~~~dl~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~d 209 (309)
T PF10567_consen 130 LQYNIINRGATRSLAIEFKDPVDKDDLIEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLD 209 (309)
T ss_pred hhheeecCCcceEEEEEecCccchhHHHHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHH
Confidence 000112233556677753322223332222 2222232 456666533 2234467899999999999999998
Q ss_pred HhC--CcccC-CeeEEEEEec
Q psy9313 332 SLN--GYALG-DRLLQVSFKT 349 (356)
Q Consensus 332 ~l~--g~~l~-gr~l~v~~a~ 349 (356)
.+. +..++ .+...|+.+.
T Consensus 210 Ylk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 210 YLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred HHHhcccccCcceEEEEeccC
Confidence 775 44455 5677777654
No 214
>KOG2318|consensus
Probab=90.40 E-value=1.3 Score=41.38 Aligned_cols=102 Identities=19% Similarity=0.294 Sum_probs=72.7
Q ss_pred cccccceEEcCCCCC-CCHHHHHHhhccc----CCeEEEEEeccccccccc-ccccCCC--------CC-----------
Q psy9313 109 AIKRANLYVSGLPKH-MTQEDLENLFRPY----GTIITSRILCDKMASENV-RSFVSGT--------PE----------- 163 (356)
Q Consensus 109 ~~~~~~l~v~nl~~~-~t~~~l~~~f~~~----g~i~~v~i~~~~~~~~~~-~~~~~~~--------~~----------- 163 (356)
.....+|-|.|+.++ +.-.+|.-+|+.| |.|.+|.|.+..-++.-+ ...+.|+ +.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999998 8888998888765 589999998754443211 1122221 00
Q ss_pred ------------CCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChh
Q psy9313 164 ------------IPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPA 210 (356)
Q Consensus 164 ------------~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~ 210 (356)
..-+..-||.|+|.+.+.|......|+|..+...+..+.+.|.....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDdm 309 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDDM 309 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCCC
Confidence 00112357899999999999999999999999888888888866543
No 215
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.05 E-value=1.9 Score=28.11 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=43.1
Q ss_pred CCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 37 TMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 37 ~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
.++-+|++..+..|+- .+| ..++ +| -||.|.+..+|+++....+|+.+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I--~~d~-tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRI--RDDR-TG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceE--EecC-CE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3678899999999974 333 3443 34 379999999999999999999988877654
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.90 E-value=1.7 Score=28.36 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=43.4
Q ss_pred CCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 281 PETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 281 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
..++-++++..+.+|+- .. |..+. +| -||.|.+..+|.+|.+..+|..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~-~~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW-DR--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCc-ce--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 35678999999999974 23 33332 22 589999999999999999999888877654
No 217
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=84.28 E-value=2 Score=28.27 Aligned_cols=63 Identities=19% Similarity=0.248 Sum_probs=48.3
Q ss_pred HHHHHHhhccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCC
Q psy9313 41 EELQHLFSSVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS 106 (356)
Q Consensus 41 ~~l~~~f~~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 106 (356)
++|.+.|...| .|..|.-+..+.++.....-||++....+.+.++ +=..++++.+.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 47888899988 7788877777766777789999998887755544 445678899999987654
No 218
>KOG4483|consensus
Probab=83.78 E-value=4.7 Score=36.02 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=47.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHh
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 88 (356)
-.-.|-|-+.|....-+||...|+.|+ .--+|.++-+. .||-.|.+...|..|| .+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaL-t~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEAL-TL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHh-hc
Confidence 456788999999999999999999996 45667777664 8999999999999999 44
No 219
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=81.06 E-value=2.1 Score=33.24 Aligned_cols=105 Identities=13% Similarity=0.104 Sum_probs=71.2
Q ss_pred CCCHHHHHHHhhc-cCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCCccccc----
Q psy9313 37 TMTQEELQHLFSS-VGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIK---- 111 (356)
Q Consensus 37 ~~te~~l~~~f~~-~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~---- 111 (356)
..+-..|...+.. ++....+.+..- ..++..+.|.+++++.+++ ......+.|..+.+..-.|......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEE-ecccccccccchhhhhhccccccccccee
Confidence 3556667666655 343323333221 1258999999999999999 3455567777777766654432211
Q ss_pred --ccceEEcCCCCC-CCHHHHHHhhcccCCeEEEEEecc
Q psy9313 112 --RANLYVSGLPKH-MTQEDLENLFRPYGTIITSRILCD 147 (356)
Q Consensus 112 --~~~l~v~nl~~~-~t~~~l~~~f~~~g~i~~v~i~~~ 147 (356)
..=|.+.|||.. .+++-++.+.+..|.+..+.....
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 122677899988 788999999999999998877654
No 220
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=78.54 E-value=3.9 Score=26.76 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=47.2
Q ss_pred HHHHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 286 NVLWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 286 ~~L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
++|.+-|+++| .+..+.-+..++++.+...-+|+.....+-.. .++=+.|+|+++.|.-...+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~~ 66 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKRK 66 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcccC
Confidence 45777888888 67888888888877777788898886543322 455678899999998766544
No 221
>KOG4019|consensus
Probab=76.49 E-value=2.2 Score=33.68 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=52.1
Q ss_pred cEEEEecCCCCCcH-----HHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe-eEEE
Q psy9313 272 WCIFVYNLAPETED-----NVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR-LLQV 345 (356)
Q Consensus 272 ~~l~V~nlp~~~t~-----~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr-~l~v 345 (356)
+++.+.+++..+-. .....+|.+|.......+++. .+...|.|.++..|..|.-.+++..|.|+ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 35777788754432 333445666665554444443 56789999999999999999999999988 8887
Q ss_pred EEecC
Q psy9313 346 SFKTH 350 (356)
Q Consensus 346 ~~a~~ 350 (356)
-|+..
T Consensus 85 yfaQ~ 89 (193)
T KOG4019|consen 85 YFAQP 89 (193)
T ss_pred EEccC
Confidence 77764
No 222
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.66 E-value=8 Score=25.44 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=46.2
Q ss_pred HHHHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 286 NVLWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 286 ~~L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
++|.+-|...| .|..+.-+..+.++.+....||+.+...+... .++=..+.|..+.|...+.+.
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCCC
Confidence 46777777777 67788878877667777888999987655333 344557888999998776543
No 223
>KOG1295|consensus
Probab=71.43 E-value=5.4 Score=35.55 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=49.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCC-ceeEEEEecCC--CCccceEEEEEecCHHHHHHHHHHhCCcee
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGE-VESCKLIRDKT--TAQSLGYGFVNYYRTEDAERAIIELNGLKL 93 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~-i~~i~~~~~~~--~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 93 (356)
...+.|.|++||+.+++++|.+-+..+-. +.-..+..... -....+.|||.|...++.......++|+.+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34678999999999999999888877532 11111111100 012356799999999999988888888865
No 224
>KOG2253|consensus
Probab=71.07 E-value=3.9 Score=39.01 Aligned_cols=77 Identities=17% Similarity=0.213 Sum_probs=62.5
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
......-.+.-++||+|+...+..+-++..+...|-|....... |+|..|.....+..|+..+.-..+.|+
T Consensus 31 qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 31 QPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred cccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 33344566788999999999999999999999999776554322 899999999999999988888888888
Q ss_pred EEEEEe
Q psy9313 97 SIKVSY 102 (356)
Q Consensus 97 ~l~v~~ 102 (356)
.+.+..
T Consensus 102 kl~~~~ 107 (668)
T KOG2253|consen 102 KLIENV 107 (668)
T ss_pred hhhccc
Confidence 776655
No 225
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.45 E-value=8.5 Score=33.07 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=100.1
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCC-------CCccceEEEEEecCHHHHHHHH----HHhC
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKT-------TAQSLGYGFVNYYRTEDAERAI----IELN 89 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~-------~~~~~g~afV~f~~~~~A~~a~----~~l~ 89 (356)
+..-.++.|...|+..+++-..+...|-+||+|++|.++.+.. .........+.|-+.+.+-... +.|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 3456688999999999999999999999999999999998761 1233457889999998876543 2333
Q ss_pred --CceeCCeEEEEEecCC-----C---c------------------ccccccceEEcCCCCCCCHHHHH-H---hhcccC
Q psy9313 90 --GLKLQNKSIKVSYARP-----S---S------------------EAIKRANLYVSGLPKHMTQEDLE-N---LFRPYG 137 (356)
Q Consensus 90 --g~~~~g~~l~v~~~~~-----~---~------------------~~~~~~~l~v~nl~~~~t~~~l~-~---~f~~~g 137 (356)
.+.+....|.+.+..= . . ...+.|.|.|.= ..+++++++. + ++..-+
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~fL~~~~ 168 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPFLKNSN 168 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhhhccCC
Confidence 1335555666655430 0 0 012334455542 2344333332 2 222223
Q ss_pred ----CeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy9313 138 ----TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191 (356)
Q Consensus 138 ----~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 191 (356)
-+++|.++...... ....+.||.+.|-+...|-..+.-+..
T Consensus 169 n~RYVlEsIDlVna~~~~-------------~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPS-------------KHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred CceEEEEEEEEeccCccc-------------ccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 35567766543222 225689999999999999988886653
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=68.68 E-value=26 Score=24.19 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=43.2
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHh
Q psy9313 29 LIVNYVPQTMTQEELQHLFSS-VG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88 (356)
Q Consensus 29 l~v~nlp~~~te~~l~~~f~~-~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 88 (356)
-|..-.+...+..+|+++++. || .|..|....-. ....-|||.+....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHhh
Confidence 455557789999999999998 56 57777766653 23457999999999999876543
No 227
>KOG4410|consensus
Probab=68.17 E-value=16 Score=31.17 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=37.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCcee-EEEEeeCCCCCCcceEEEEEEccHH
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQ-NVKVVRDPQTYKCKGFGFVCMTNYD 324 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~ 324 (356)
..+-|++.|||.+..-.||+..+.+-|.+- ++.. + ...|.||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-k-----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-K-----GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee-e-----cCCcceeEecCCcc
Confidence 456799999999999999999998877543 3333 2 23678999997753
No 228
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=66.69 E-value=11 Score=24.73 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=45.4
Q ss_pred HHHHHHhhccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q psy9313 41 EELQHLFSSVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105 (356)
Q Consensus 41 ~~l~~~f~~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 105 (356)
++|++.|..+| .+..+.-+..+.++....+-+|+.....+-+. .++=..++|+.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46889999998 77788777776656566688898887765555 2344567889998886654
No 229
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=65.87 E-value=34 Score=23.16 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=43.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHh
Q psy9313 28 NLIVNYVPQTMTQEELQHLFSS-VG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88 (356)
Q Consensus 28 ~l~v~nlp~~~te~~l~~~f~~-~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 88 (356)
.-|+..++...+..+|+++++. || .|..|....-+ ....-|||.+.....|......+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHhh
Confidence 3566678899999999999988 55 56777665543 23347999999999998876443
No 230
>KOG4483|consensus
Probab=63.81 E-value=11 Score=33.69 Aligned_cols=54 Identities=17% Similarity=0.280 Sum_probs=43.5
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCce-eEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHH
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAV-QNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 332 (356)
-+|-|.++|...-.+||...|+.|+.= -.|.++-+ ..||-.|.+...|..|+-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 368899999999999999999999753 23444443 4699999999999999884
No 231
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.08 E-value=14 Score=27.31 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=31.3
Q ss_pred EEEEecCCCC---------CcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccH-HHHHHHHH
Q psy9313 273 CIFVYNLAPE---------TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY-DEAVFAIQ 331 (356)
Q Consensus 273 ~l~V~nlp~~---------~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~~ 331 (356)
+++|.|++.. .+.+.|.+.|..|.++ .++.+.++. ..+|+++|.|.+. ..-..|++
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 6788888643 3558899999999886 466666653 4589999999864 33444444
No 232
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=60.81 E-value=38 Score=22.88 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=42.9
Q ss_pred EEEecCCCCCcHHHHHHhhcC-CC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHh
Q psy9313 274 IFVYNLAPETEDNVLWQLFGP-FG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333 (356)
Q Consensus 274 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 333 (356)
-|+..++...+..+|++.++. || .|.+|..+.-+. ...-|||.+..-+.|..+...+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 467778999999999998887 55 567776666542 2456999999888888776543
No 233
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=59.60 E-value=39 Score=23.28 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=43.2
Q ss_pred EEEecCCCCCcHHHHHHhhcC-CC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHh
Q psy9313 274 IFVYNLAPETEDNVLWQLFGP-FG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333 (356)
Q Consensus 274 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 333 (356)
-|..-++...+..+|++.++. || .|.+|..+.-+. ...-|||.+..-++|..+...+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 466668888999999999987 56 577777766542 2456999999988888876543
No 234
>KOG2891|consensus
Probab=59.34 E-value=2.2 Score=35.96 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=48.6
Q ss_pred EEEEecCCCC------------CcHHHHHHhhcCCCceeEEEEeeC-----CCCCCc-----ceEE---------EEEEc
Q psy9313 273 CIFVYNLAPE------------TEDNVLWQLFGPFGAVQNVKVVRD-----PQTYKC-----KGFG---------FVCMT 321 (356)
Q Consensus 273 ~l~V~nlp~~------------~t~~~L~~~f~~~G~v~~v~i~~~-----~~~~~~-----~g~a---------fV~f~ 321 (356)
||++.+||-. -+++.|...|+.||.|..|.|+.- .-+|+. +||+ ||+|-
T Consensus 151 ti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfm 230 (445)
T KOG2891|consen 151 TIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFM 230 (445)
T ss_pred ceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHH
Confidence 6777777622 467889999999999998887632 122332 3333 45555
Q ss_pred cHHHHHHHHHHhCCccc----CC----eeEEEEEecCCC
Q psy9313 322 NYDEAVFAIQSLNGYAL----GD----RLLQVSFKTHKP 352 (356)
Q Consensus 322 ~~~~A~~a~~~l~g~~l----~g----r~l~v~~a~~~~ 352 (356)
....-..|+..|.|..+ +| -.+.|+|.++.-
T Consensus 231 eykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsrh 269 (445)
T KOG2891|consen 231 EYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSRH 269 (445)
T ss_pred HHHhHHHHHHHHhcchHHhhcCCcccccccccccchhhh
Confidence 55555566666666432 23 356677766543
No 235
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=59.28 E-value=23 Score=22.70 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=14.8
Q ss_pred HHHHHHhhccCCceeEEE
Q psy9313 41 EELQHLFSSVGEVESCKL 58 (356)
Q Consensus 41 ~~l~~~f~~~g~i~~i~~ 58 (356)
.+|+++|+.+|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999875544
No 236
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=58.33 E-value=17 Score=26.89 Aligned_cols=55 Identities=20% Similarity=0.332 Sum_probs=30.2
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHH-HHHHHH
Q psy9313 28 NLIVNYVPQT---------MTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE-DAERAI 85 (356)
Q Consensus 28 ~l~v~nlp~~---------~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~-~A~~a~ 85 (356)
++.|-|+|.. ++.++|++.|..|.++. ++...+. .-..|+|.|+|...- .-..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 3456666543 35588999999998764 6666664 357789999996543 344555
No 237
>KOG4365|consensus
Probab=58.08 E-value=1.8 Score=39.05 Aligned_cols=77 Identities=4% Similarity=-0.206 Sum_probs=60.2
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
..++..+|...+++++.-+|+.||.|..+..-+....|...-.+||.-.+ ++|..+++.+.-..++|..+++..++.
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 35677889999999999999999999888776655555555677888775 567788887777778888888887765
No 238
>KOG2295|consensus
Probab=54.66 E-value=2.2 Score=39.76 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=55.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
....|+|+++|+++.++-.+|..+|+.+-.+..+-+.............+|.|..--....|+..||+..+..
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 3567899999999999999999999998655555544333333455678899998888888888888876643
No 239
>KOG4019|consensus
Probab=48.80 E-value=19 Score=28.59 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=52.6
Q ss_pred CceEEEcCCCCCC--CHHHH---HHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe-EEE
Q psy9313 26 NSNLIVNYVPQTM--TQEEL---QHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK-SIK 99 (356)
Q Consensus 26 ~~~l~v~nlp~~~--te~~l---~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~-~l~ 99 (356)
.+++.+++++..+ +..+. ..+|.+|.+..-..+++. .+..-|.|.+++.|..|...+++..|.|. .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 4567888888764 22222 345666655444444433 34677999999999999999999999888 788
Q ss_pred EEecCCC
Q psy9313 100 VSYARPS 106 (356)
Q Consensus 100 v~~~~~~ 106 (356)
.-++.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 7777654
No 240
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=42.90 E-value=98 Score=28.14 Aligned_cols=82 Identities=15% Similarity=0.218 Sum_probs=58.8
Q ss_pred CCCcEEEEecCCC-CCcHHHHHHhhcCC----CceeEEEEeeCCC-----------------------------------
Q psy9313 269 GSGWCIFVYNLAP-ETEDNVLWQLFGPF----GAVQNVKVVRDPQ----------------------------------- 308 (356)
Q Consensus 269 ~~~~~l~V~nlp~-~~t~~~L~~~f~~~----G~v~~v~i~~~~~----------------------------------- 308 (356)
.++..|-|.|+.| .+...+|...|+.| |.+..|.|.+..-
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 3567899999997 56778999888755 5677787764210
Q ss_pred -----CC-------C------------------cceEEEEEEccHHHHHHHHHHhCCcccC--CeeEEEEEecC
Q psy9313 309 -----TY-------K------------------CKGFGFVCMTNYDEAVFAIQSLNGYALG--DRLLQVSFKTH 350 (356)
Q Consensus 309 -----~~-------~------------------~~g~afV~f~~~~~A~~a~~~l~g~~l~--gr~l~v~~a~~ 350 (356)
-| . ..=||.|++.+...+...+...+|..+. +..+.+.|-..
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 00 0 0126899999999999999999998887 46666766543
No 241
>KOG4410|consensus
Probab=42.29 E-value=38 Score=29.04 Aligned_cols=50 Identities=6% Similarity=0.191 Sum_probs=36.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHH
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~ 79 (356)
..+-|+++|||.++--.||+..+.+.|.+- ..+.+ .| ..|-||+-|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw---kg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW---KG-HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEee---ec-CCcceeEecCCcc
Confidence 456699999999999999999999987532 22222 12 3467999996643
No 242
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.68 E-value=13 Score=33.46 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=51.7
Q ss_pred CCCCceEEEcCCCCCCCHH--------HHHHHhhc--cCCceeEEEEecCCCCccceEEEEEecCHHHHHHHH
Q psy9313 23 NEQNSNLIVNYVPQTMTQE--------ELQHLFSS--VGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~--------~l~~~f~~--~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 85 (356)
....+.+|+.+.+...+.. ++...|.. ++.+..|...++......+|..|++|.....|++++
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 4455677888887766555 89999999 788999988888766778899999999999999887
No 243
>KOG4008|consensus
Probab=39.44 E-value=30 Score=28.80 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=29.8
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCcee
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVES 55 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~ 55 (356)
.....+.++|+-|+|..++++.|.++.+..|-+..
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~ 69 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQE 69 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhh
Confidence 45567889999999999999999999999985443
No 244
>KOG2891|consensus
Probab=39.36 E-value=26 Score=29.81 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=30.1
Q ss_pred ccccceEEcCCCCCC------------CHHHHHHhhcccCCeEEEEEecc
Q psy9313 110 IKRANLYVSGLPKHM------------TQEDLENLFRPYGTIITSRILCD 147 (356)
Q Consensus 110 ~~~~~l~v~nl~~~~------------t~~~l~~~f~~~g~i~~v~i~~~ 147 (356)
....+|++.+||-.+ +++-|+..|..||.|..|.|+.-
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipic 196 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPIC 196 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCccc
Confidence 345579999988543 57789999999999999888753
No 245
>KOG4213|consensus
Probab=39.25 E-value=40 Score=26.84 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=40.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCC--ccceEEEEEecCHHHHHHHHHH
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA--QSLGYGFVNYYRTEDAERAIIE 87 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~ 87 (356)
....+++|.. |.+..-++|.++-+ |.+..|.+.+.. .+ ..+|-.||+|.+.+.|..++..
T Consensus 108 ~~~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 108 GIKERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3455677776 33334445555555 688888765543 34 5788999999999999998843
No 246
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=38.44 E-value=14 Score=33.27 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=46.5
Q ss_pred cEEEEecCCCCCc--------HHHHHHhhcC--CCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHH
Q psy9313 272 WCIFVYNLAPETE--------DNVLWQLFGP--FGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331 (356)
Q Consensus 272 ~~l~V~nlp~~~t--------~~~L~~~f~~--~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 331 (356)
+.+|+.+.+...+ .+++...|.. ++.+..+...++......+|-.|++|.....|++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3466666654444 3599999999 6788888887776556678889999999999999775
No 247
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=37.95 E-value=50 Score=21.87 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=23.2
Q ss_pred eEEEEEEccHHHHHHHHHHhCCcccCCee
Q psy9313 314 GFGFVCMTNYDEAVFAIQSLNGYALGDRL 342 (356)
Q Consensus 314 g~afV~f~~~~~A~~a~~~l~g~~l~gr~ 342 (356)
.+.+|.|.+..+|.+|-+.|....+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 36899999999999999988766554443
No 248
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=35.82 E-value=1.5e+02 Score=21.14 Aligned_cols=48 Identities=21% Similarity=0.354 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHhhc-cCCceeEEEEecCCC----CccceEEEEEecCHHHHHHH
Q psy9313 36 QTMTQEELQHLFSS-VGEVESCKLIRDKTT----AQSLGYGFVNYYRTEDAERA 84 (356)
Q Consensus 36 ~~~te~~l~~~f~~-~g~i~~i~~~~~~~~----~~~~g~afV~f~~~~~A~~a 84 (356)
.+.+..+|++.+.+ ++.-.+..++....| |.+.|||.| |.+.+.|++.
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 35677888865554 564444444444333 467777765 6666766654
No 249
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.37 E-value=82 Score=27.96 Aligned_cols=56 Identities=21% Similarity=0.214 Sum_probs=35.8
Q ss_pred EEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCCcccccccceEEcCCCCCCCHHHHHHhhc
Q psy9313 71 GFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFR 134 (356)
Q Consensus 71 afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~ 134 (356)
|||+|.+..+|..|++.+.... ++.+.+..+.++ +.|+=.||..+..+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP------~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP------DDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc------ccccccccCCChHHHHHHHHHH
Confidence 7999999999999997544433 344566665432 3344556655555555555444
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.70 E-value=53 Score=29.14 Aligned_cols=36 Identities=33% Similarity=0.398 Sum_probs=26.0
Q ss_pred EEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhh
Q psy9313 172 GFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAG 211 (356)
Q Consensus 172 afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~ 211 (356)
|||+|++..+|..|.+.+..... ..+.+..|.++.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~----~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP----NSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC----CCceEeeCCCccc
Confidence 79999999999999997655443 3346666665544
No 251
>PHA01632 hypothetical protein
Probab=33.86 E-value=44 Score=20.66 Aligned_cols=21 Identities=33% Similarity=0.653 Sum_probs=17.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc
Q psy9313 29 LIVNYVPQTMTQEELQHLFSS 49 (356)
Q Consensus 29 l~v~nlp~~~te~~l~~~f~~ 49 (356)
|.|..+|..-||++|++.+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999987765
No 252
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.75 E-value=80 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=20.6
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcC
Q psy9313 168 SKGIGFVRFNQHIEAEHAMQELNG 191 (356)
Q Consensus 168 ~~g~afV~f~~~~~a~~a~~~~~~ 191 (356)
.+||-|||=.+..++..|++.+.+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 689999999999999999986644
No 253
>KOG2295|consensus
Probab=32.67 E-value=5.8 Score=37.10 Aligned_cols=70 Identities=14% Similarity=0.060 Sum_probs=48.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG 339 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 339 (356)
..|+++++|+++..+-.+|..+++.+..+.++-+--..--..-..+..|+|.---....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 5678999999999999999999999877766554322111111345788998666666666667665544
No 254
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.37 E-value=78 Score=21.69 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=23.5
Q ss_pred ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q psy9313 297 AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335 (356)
Q Consensus 297 ~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 335 (356)
.|.++..+.+ .+||.||+=.+.++...|++.+.+
T Consensus 33 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS-----LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT-----STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC-----CceEEEEEeCCHHHHHHHHhcccc
Confidence 4555554433 489999999999999999987765
No 255
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.45 E-value=59 Score=22.74 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=33.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CceeEEEEecCC----CCc------cceEEEEEecCHH
Q psy9313 29 LIVNYVPQTMTQEELQHLFSS-VG-EVESCKLIRDKT----TAQ------SLGYGFVNYYRTE 79 (356)
Q Consensus 29 l~v~nlp~~~te~~l~~~f~~-~g-~i~~i~~~~~~~----~~~------~~g~afV~f~~~~ 79 (356)
-+...++..++..||+++++. || .|..|....-.. .|. ...-|+|++...+
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 455567899999999999988 55 466666554431 111 1236888887664
No 256
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=29.80 E-value=49 Score=18.64 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.6
Q ss_pred CCCHHHHHHHhhccCCc
Q psy9313 37 TMTQEELQHLFSSVGEV 53 (356)
Q Consensus 37 ~~te~~l~~~f~~~g~i 53 (356)
++++++|++++..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999999853
No 257
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=28.80 E-value=81 Score=20.35 Aligned_cols=33 Identities=30% Similarity=0.443 Sum_probs=24.3
Q ss_pred CHHHHHHHhhccCCceeEEEEecCCCCccceEEEE
Q psy9313 39 TQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFV 73 (356)
Q Consensus 39 te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV 73 (356)
-+.+|.++|-+.-.|.++.+...+. ..+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKr--i~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKR--IRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEe--eeCCceeE
Confidence 3566778888878899999988764 45566776
No 258
>PRK11901 hypothetical protein; Reviewed
Probab=27.63 E-value=2.4e+02 Score=25.09 Aligned_cols=65 Identities=15% Similarity=0.142 Sum_probs=43.1
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCc-cceEEEEEecCHHHHHHHHHHhCC
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ-SLGYGFVNYYRTEDAERAIIELNG 90 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~g 90 (356)
.+...-+|.|-.+ -.++.|..|..+++ +..+++.+....|+ ..-.-|=.|.+.++|+.|+..|..
T Consensus 241 ~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 241 APASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3455566666654 45888999988886 45566666544453 222233468999999999988764
No 259
>KOG4008|consensus
Probab=26.87 E-value=41 Score=28.07 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=28.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKV 303 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i 303 (356)
...++++.|+|...|++.|..+.++.|.++.+..
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 4557999999999999999999999997765543
No 260
>PRK11901 hypothetical protein; Reviewed
Probab=26.39 E-value=2e+02 Score=25.55 Aligned_cols=64 Identities=14% Similarity=0.030 Sum_probs=42.7
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEE--EEEEccHHHHHHHHHHhCC
Q psy9313 267 LHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFG--FVCMTNYDEAVFAIQSLNG 335 (356)
Q Consensus 267 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~a--fV~f~~~~~A~~a~~~l~g 335 (356)
.+...++|-|..+ ..++.|..|..+++ +..+++......|+.. |. +=.|.+.++|+.|+..|-.
T Consensus 241 ~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 241 APASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 3446778888776 45778888887775 3455565544444432 22 3468899999999998754
No 261
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=25.71 E-value=2.7e+02 Score=21.48 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=38.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHH
Q psy9313 29 LIVNYVPQTMTQEELQHLFSS-VG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85 (356)
Q Consensus 29 l~v~nlp~~~te~~l~~~f~~-~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 85 (356)
-|+.-+....+..+|+++++. |+ .|..|....... ...-|||.+....+|....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 444556788899999999998 55 466666555432 2346999998888776554
No 262
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=25.32 E-value=1.9e+02 Score=23.36 Aligned_cols=56 Identities=25% Similarity=0.481 Sum_probs=42.2
Q ss_pred CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCCcccccccceEEcC
Q psy9313 52 EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSG 119 (356)
Q Consensus 52 ~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~l~v~n 119 (356)
.+.-|.+++++ +.|.+.++|.+-+ .-.|..++...|.+....|.... ...+|||.-
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~l-E~e~KlWreteI~I~~g~p~VNE-~TkkIYICP 91 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRIL-EEEGKLWRETEIKIQSGKPSVNE-QTKKIYICP 91 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHH-HHhcchheeeeEEEecCCccccc-ccceEEEcC
Confidence 35667777776 6899999999999 45899999999999988775433 244566653
No 263
>KOG4213|consensus
Probab=25.27 E-value=1e+02 Score=24.59 Aligned_cols=60 Identities=17% Similarity=0.085 Sum_probs=40.9
Q ss_pred cccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHH
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~ 188 (356)
..+++|.. +.+...++|.++-+ |.+..+.+...... +...+|-.||+|.+.+.|...++.
T Consensus 110 ~~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k--------------~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 110 KERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNK--------------AHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCC--------------CCCCCCceEEEeecHHHHHhhhhh
Confidence 34566666 33444445555545 78888888765433 125789999999999999988764
No 264
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=24.59 E-value=1.8e+02 Score=18.01 Aligned_cols=54 Identities=17% Similarity=0.071 Sum_probs=40.0
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccH----HHHHHHHHH
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY----DEAVFAIQS 332 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~----~~A~~a~~~ 332 (356)
|+.|.|+.-.--...+.+.+...-.|.++.+-.. .+.+-|.|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5778888777777889999999988999888554 46788999754 445555553
No 265
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=24.01 E-value=1.7e+02 Score=21.06 Aligned_cols=63 Identities=13% Similarity=0.237 Sum_probs=40.7
Q ss_pred HHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 128 ~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
..-.+|..||-+..+.---+.....++.++.......++-.--+.+|+|.+.+...++...+.
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~m 86 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKMM 86 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHhh
Confidence 446688889977766655555555556666666666666677889999999999999887654
No 266
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=23.82 E-value=1.1e+02 Score=21.69 Aligned_cols=59 Identities=7% Similarity=0.183 Sum_probs=36.8
Q ss_pred hhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 132 LFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 132 ~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
++..||....+.-..+.--..++.++....-+.+.----|.+++|.+.+....+...+.
T Consensus 29 v~kE~Gal~~VEc~~dDVP~Gk~T~F~rAVkA~ddE~VvFsW~~Y~skq~rDA~~~kmM 87 (117)
T COG5507 29 VWKEFGALRYVECWADDVPYGKLTDFPRAVKAKDDEEVVFSWIEYPSKQVRDAANAKMM 87 (117)
T ss_pred HHHHhCchhhhhhcccCCCCCcccchhhhhhccCCcEEEEEEEEcCchhHHHHHHHHhh
Confidence 34445555544444444444444455544444555566789999999999999887653
No 267
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=2.3e+02 Score=25.93 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=32.6
Q ss_pred cccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccC
Q psy9313 168 SKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208 (356)
Q Consensus 168 ~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~ 208 (356)
..-||.|++.+.+.+......|+|.........+.+.+...
T Consensus 257 ryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD 297 (622)
T COG5638 257 RYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPD 297 (622)
T ss_pred eeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCC
Confidence 35689999999999999999999988776666666666543
No 268
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.46 E-value=2.6e+02 Score=21.73 Aligned_cols=45 Identities=13% Similarity=0.036 Sum_probs=30.2
Q ss_pred HHHHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC
Q psy9313 286 NVLWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335 (356)
Q Consensus 286 ~~L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 335 (356)
+.|.+..+..| .|.++.++.. -.||.||+....+++..+++.+.+
T Consensus 23 ~~L~~~~~~~~~~i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 23 LMLAMRAKKENLPIYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred HHHHHHHHhCCCcEEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 34444443222 2556665554 389999999988888898887765
No 269
>CHL00030 rpl23 ribosomal protein L23
Probab=22.16 E-value=2.8e+02 Score=19.59 Aligned_cols=34 Identities=24% Similarity=0.189 Sum_probs=25.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc-cC-CceeEEEEec
Q psy9313 28 NLIVNYVPQTMTQEELQHLFSS-VG-EVESCKLIRD 61 (356)
Q Consensus 28 ~l~v~nlp~~~te~~l~~~f~~-~g-~i~~i~~~~~ 61 (356)
.-|+--.+...+..+|+++++. || .|..|....-
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~ 55 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRL 55 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEc
Confidence 3566667899999999999988 55 5666666554
No 270
>PF14893 PNMA: PNMA
Probab=21.64 E-value=68 Score=28.68 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=21.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSS 49 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~ 49 (356)
..+.|.|.+||.+|++.+|.+.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 4578999999999999999876654
No 271
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.63 E-value=3.1e+02 Score=21.17 Aligned_cols=55 Identities=9% Similarity=0.158 Sum_probs=39.1
Q ss_pred EEEecCCCCCcHHHHHHhhcC-CC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHH
Q psy9313 274 IFVYNLAPETEDNVLWQLFGP-FG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331 (356)
Q Consensus 274 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 331 (356)
-++.-++...+..+|++.++. |+ .|..|..+..+. ..--|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~---g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD---GLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC---CceEEEEEECCCCcHHHHHH
Confidence 456668888999999998887 55 566776666543 23469999987777665444
No 272
>PF15063 TC1: Thyroid cancer protein 1
Probab=21.57 E-value=85 Score=21.00 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=26.5
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCC
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGE 52 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~ 52 (356)
...+...++=-+.||=.++....|..+|..-|.
T Consensus 19 ~~~dt~~RKkasaNIFe~vn~~qlqrLF~~sGD 51 (79)
T PF15063_consen 19 YKFDTASRKKASANIFENVNLDQLQRLFQKSGD 51 (79)
T ss_pred CCcchHHhhhhhhhhhhccCHHHHHHHHHHccc
Confidence 334455666678899999999999999999985
No 273
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=21.43 E-value=3e+02 Score=19.34 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=34.9
Q ss_pred cCCCCCcHHHHHHhhcCCCce-eEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhC
Q psy9313 278 NLAPETEDNVLWQLFGPFGAV-QNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN 334 (356)
Q Consensus 278 nlp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 334 (356)
.+-...+...|..-|.--|.= .-..+.+|-. +..|.|+|.+.+.+..|.+.|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W----~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYW----RPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccc----eEeEEEECCChHHHHHHHHHHH
Confidence 345566777777666554521 1223334433 5789999999999999998764
No 274
>PRK10905 cell division protein DamX; Validated
Probab=21.38 E-value=2.2e+02 Score=25.18 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=42.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCc-cceEEEEEecCHHHHHHHHHHhCC
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ-SLGYGFVNYYRTEDAERAIIELNG 90 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~g 90 (356)
+...-+|.|..+ -.++.|..|..++| +....+......|. ....-|=.|.+.++|++|+..|..
T Consensus 244 pa~~YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 244 PSSHYTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCCceEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 344556666544 56788888888886 34444545444554 333444578999999999988754
No 275
>KOG4365|consensus
Probab=21.33 E-value=15 Score=33.38 Aligned_cols=78 Identities=3% Similarity=-0.146 Sum_probs=59.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
+.+-++..+|...+++++.-.|..||.|.-+...+....+-..-.+|+.-.+ ++|..++..+.-..+.|..+++..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 4556788999999999999999999998887777766556666678876654 45666776666666777777777764
No 276
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=21.16 E-value=3.3e+02 Score=20.70 Aligned_cols=48 Identities=8% Similarity=0.243 Sum_probs=27.5
Q ss_pred CCCCHHHHHHHhhc-cC-CceeEEEEecCC----CCccceEEEEEecCHHHHHHH
Q psy9313 36 QTMTQEELQHLFSS-VG-EVESCKLIRDKT----TAQSLGYGFVNYYRTEDAERA 84 (356)
Q Consensus 36 ~~~te~~l~~~f~~-~g-~i~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~a 84 (356)
...+..+|++.+.. |+ .-.+..++.... .|.+.|||.| |.+.+.|.+.
T Consensus 34 ~TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk~ 87 (132)
T PTZ00071 34 GTVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKKF 87 (132)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35678888876665 45 233333433322 3567777766 5666666543
No 277
>KOG3424|consensus
Probab=20.54 E-value=2.8e+02 Score=20.50 Aligned_cols=48 Identities=13% Similarity=0.280 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhhccC-CceeEEEE----ecCCCCccceEEEEEecCHHHHHHH
Q psy9313 36 QTMTQEELQHLFSSVG-EVESCKLI----RDKTTAQSLGYGFVNYYRTEDAERA 84 (356)
Q Consensus 36 ~~~te~~l~~~f~~~g-~i~~i~~~----~~~~~~~~~g~afV~f~~~~~A~~a 84 (356)
..++.+||++-+.+.- .-.++.++ .....|++.|||.| |.+.+.|++.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 3467888887776632 22222222 23334678888876 6777777754
No 278
>PF15628 RRM_DME: RRM in Demeter
Probab=20.39 E-value=1.2e+02 Score=21.49 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=30.9
Q ss_pred HhCCceeCCeEEEEEecCCCcc---------cccccceEEc----CCCCCCCHHHHHHhhcc
Q psy9313 87 ELNGLKLQNKSIKVSYARPSSE---------AIKRANLYVS----GLPKHMTQEDLENLFRP 135 (356)
Q Consensus 87 ~l~g~~~~g~~l~v~~~~~~~~---------~~~~~~l~v~----nl~~~~t~~~l~~~f~~ 135 (356)
-|||+++.-.++.....+.... ....+.||++ .+-..++.++|++.|.+
T Consensus 16 PLnGTYFQ~nEVFaD~~Ss~~Pi~vpr~~iw~L~rr~vYfGtsv~SIfrGls~~eIq~cF~~ 77 (103)
T PF15628_consen 16 PLNGTYFQVNEVFADHESSRNPIDVPRELIWNLPRRIVYFGTSVSSIFRGLSREEIQQCFWK 77 (103)
T ss_pred ccCceEEEEEEEEeccccccCCeeccHHHhhcCCceEEEecCcHHHHhcccCHHHHHHHHhc
Confidence 4677777666666655443221 2334567766 34567899999999964
No 279
>KOG1295|consensus
Probab=20.14 E-value=1.3e+02 Score=27.19 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=45.2
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCc-eeEEEEeeCCCC--CCcceEEEEEEccHHHHHHHHHHhCCccc
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGA-VQNVKVVRDPQT--YKCKGFGFVCMTNYDEAVFAIQSLNGYAL 338 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~l 338 (356)
+.|.|.+||...++++|.+-..++-. +..........+ ..-.+.|+|.|.+..+...-.+.++|+++
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 46889999999999999988877642 222222211100 11256799999999997777777777653
Done!