Query psy9313
Match_columns 356
No_of_seqs 180 out of 1939
Neff 10.5
Searched_HMMs 29240
Date Sat Aug 17 00:11:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 3.3E-48 1.1E-52 339.7 27.3 259 16-352 31-292 (292)
2 3smz_A Protein raver-1, ribonu 100.0 1.9E-47 6.6E-52 333.5 30.0 247 23-353 19-266 (284)
3 1fxl_A Paraneoplastic encephal 100.0 1.4E-34 4.9E-39 231.9 23.0 167 25-206 1-167 (167)
4 4f02_A Polyadenylate-binding p 100.0 9.8E-35 3.4E-39 241.8 21.4 170 23-211 12-183 (213)
5 1b7f_A Protein (SXL-lethal pro 100.0 1.4E-34 4.7E-39 232.3 21.4 167 25-206 2-168 (168)
6 2qfj_A FBP-interacting repress 100.0 1.4E-33 4.8E-38 235.9 23.2 184 110-355 26-209 (216)
7 4f02_A Polyadenylate-binding p 100.0 1E-33 3.4E-38 235.7 19.7 171 108-351 11-181 (213)
8 3md3_A Nuclear and cytoplasmic 100.0 3.5E-33 1.2E-37 223.6 20.9 165 113-349 1-165 (166)
9 1b7f_A Protein (SXL-lethal pro 100.0 1.2E-32 4E-37 221.0 20.2 165 111-348 2-168 (168)
10 3md3_A Nuclear and cytoplasmic 100.0 1.1E-32 3.7E-37 220.7 19.8 163 27-207 1-165 (166)
11 1l3k_A Heterogeneous nuclear r 100.0 1.2E-32 3.9E-37 226.8 20.5 178 107-353 8-185 (196)
12 1l3k_A Heterogeneous nuclear r 100.0 1.1E-32 3.8E-37 226.9 20.3 174 20-212 7-186 (196)
13 1fxl_A Paraneoplastic encephal 100.0 1.9E-32 6.6E-37 219.5 20.8 164 112-348 2-167 (167)
14 2cjk_A Nuclear polyadenylated 100.0 1.5E-33 5.2E-38 226.0 14.3 166 24-209 1-166 (167)
15 2qfj_A FBP-interacting repress 100.0 2.7E-33 9.2E-38 234.2 16.0 171 22-209 24-205 (216)
16 3nmr_A Cugbp ELAV-like family 100.0 2.7E-32 9.3E-37 220.4 21.2 167 25-207 2-175 (175)
17 2cjk_A Nuclear polyadenylated 100.0 1.1E-32 3.8E-37 220.9 15.7 166 111-352 2-167 (167)
18 3nmr_A Cugbp ELAV-like family 100.0 1.9E-31 6.6E-36 215.4 19.9 170 111-349 2-175 (175)
19 2g4b_A Splicing factor U2AF 65 100.0 4.3E-31 1.5E-35 212.7 18.1 160 24-207 2-172 (172)
20 2yh0_A Splicing factor U2AF 65 100.0 1.2E-30 4E-35 215.1 20.0 184 111-354 3-197 (198)
21 3smz_A Protein raver-1, ribonu 100.0 1.9E-30 6.4E-35 226.0 21.7 174 23-214 92-269 (284)
22 2g4b_A Splicing factor U2AF 65 100.0 4.4E-31 1.5E-35 212.6 16.3 159 111-349 3-172 (172)
23 3tyt_A Heterogeneous nuclear r 100.0 1.4E-30 4.7E-35 214.3 17.7 161 24-206 2-204 (205)
24 1fje_B Nucleolin RBD12, protei 100.0 4.2E-31 1.4E-35 213.4 13.5 165 21-209 8-174 (175)
25 2yh0_A Splicing factor U2AF 65 100.0 2.5E-31 8.7E-36 219.1 12.2 163 24-210 2-195 (198)
26 2adc_A Polypyrimidine tract-bi 100.0 5.1E-30 1.8E-34 215.7 19.7 162 21-209 29-228 (229)
27 3pgw_A U1-A; protein-RNA compl 100.0 7.3E-30 2.5E-34 222.0 20.8 162 21-207 4-281 (282)
28 2adc_A Polypyrimidine tract-bi 100.0 8.2E-30 2.8E-34 214.5 20.4 199 105-351 27-228 (229)
29 3tyt_A Heterogeneous nuclear r 100.0 4.9E-30 1.7E-34 211.0 18.3 194 111-348 3-204 (205)
30 1fje_B Nucleolin RBD12, protei 100.0 8E-31 2.7E-35 211.7 12.8 167 108-352 9-175 (175)
31 3pgw_A U1-A; protein-RNA compl 100.0 3.1E-29 1E-33 218.1 23.1 216 109-349 6-281 (282)
32 1qm9_A Polypyrimidine tract-bi 100.0 9E-30 3.1E-34 209.7 18.0 191 112-351 3-197 (198)
33 1qm9_A Polypyrimidine tract-bi 100.0 1E-29 3.5E-34 209.4 15.9 158 25-209 2-197 (198)
34 2ghp_A U4/U6 snRNA-associated 100.0 1.9E-29 6.6E-34 220.5 17.2 167 25-209 116-291 (292)
35 3sde_A Paraspeckle component 1 100.0 6.8E-29 2.3E-33 213.0 20.2 163 19-209 15-179 (261)
36 3sde_A Paraspeckle component 1 100.0 6.2E-29 2.1E-33 213.3 19.1 156 110-351 20-179 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 7.5E-24 2.6E-28 167.6 14.0 85 270-354 69-153 (158)
38 4f25_A Polyadenylate-binding p 99.9 5.1E-23 1.8E-27 153.2 11.7 103 24-128 3-113 (115)
39 4fxv_A ELAV-like protein 1; RN 99.9 1.3E-22 4.4E-27 146.4 11.3 81 270-350 18-98 (99)
40 4fxv_A ELAV-like protein 1; RN 99.9 5.4E-22 1.8E-26 143.1 11.9 84 23-106 16-99 (99)
41 2i2y_A Fusion protein consists 99.9 5.3E-22 1.8E-26 155.3 10.5 138 167-352 11-149 (150)
42 3s8s_A Histone-lysine N-methyl 99.9 5.3E-21 1.8E-25 140.5 12.2 82 270-351 5-86 (110)
43 3bs9_A Nucleolysin TIA-1 isofo 99.8 7.9E-21 2.7E-25 134.2 11.3 83 270-352 5-87 (87)
44 2lxi_A RNA-binding protein 10; 99.8 6.6E-22 2.3E-26 140.5 5.6 82 272-353 2-85 (91)
45 2lkz_A RNA-binding protein 5; 99.8 1.6E-21 5.4E-26 138.9 7.1 80 271-350 9-94 (95)
46 3s8s_A Histone-lysine N-methyl 99.8 7.1E-21 2.4E-25 139.9 10.5 87 22-108 2-88 (110)
47 2kn4_A Immunoglobulin G-bindin 99.8 2.3E-20 8E-25 147.4 14.2 136 55-209 2-150 (158)
48 3md1_A Nuclear and cytoplasmic 99.8 1.6E-20 5.6E-25 131.3 11.8 82 271-352 1-82 (83)
49 2lea_A Serine/arginine-rich sp 99.8 1.8E-21 6.1E-26 148.9 7.2 86 270-355 46-131 (135)
50 1p27_B RNA-binding protein 8A; 99.8 1.5E-20 5.1E-25 138.0 11.6 86 269-354 21-106 (106)
51 2lxi_A RNA-binding protein 10; 99.8 2.9E-21 9.9E-26 137.2 7.4 84 26-109 1-86 (91)
52 3p5t_L Cleavage and polyadenyl 99.8 1.9E-21 6.6E-26 138.1 6.4 83 272-354 2-86 (90)
53 2i2y_A Fusion protein consists 99.8 1.6E-20 5.3E-25 146.9 11.9 122 65-209 10-148 (150)
54 2dgo_A Cytotoxic granule-assoc 99.8 4.8E-20 1.6E-24 137.4 13.4 86 269-354 13-98 (115)
55 2cq0_A Eukaryotic translation 99.8 5.7E-20 1.9E-24 134.1 13.3 86 268-353 12-97 (103)
56 2x1f_A MRNA 3'-END-processing 99.8 1.6E-20 5.5E-25 135.1 10.1 84 270-353 1-84 (96)
57 2dnz_A Probable RNA-binding pr 99.8 3.9E-20 1.3E-24 132.9 11.9 84 270-353 4-87 (95)
58 1whw_A Hypothetical protein ri 99.8 3.7E-20 1.3E-24 134.1 11.7 85 269-353 6-90 (99)
59 2cqc_A Arginine/serine-rich sp 99.8 4.7E-20 1.6E-24 132.5 11.7 83 268-350 12-94 (95)
60 2do4_A Squamous cell carcinoma 99.8 1.1E-19 3.7E-24 131.9 13.5 84 269-353 15-98 (100)
61 2dgs_A DAZ-associated protein 99.8 7.6E-20 2.6E-24 132.4 12.6 84 269-353 8-91 (99)
62 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.9E-20 1E-24 130.6 10.0 80 270-349 6-85 (85)
63 2la6_A RNA-binding protein FUS 99.8 7.4E-20 2.5E-24 132.4 12.3 82 268-349 10-99 (99)
64 2cqc_A Arginine/serine-rich sp 99.8 9E-20 3.1E-24 131.0 12.6 90 16-105 5-94 (95)
65 2e5h_A Zinc finger CCHC-type a 99.8 5.7E-20 2E-24 131.8 11.3 81 269-349 14-94 (94)
66 2cq0_A Eukaryotic translation 99.8 9.4E-20 3.2E-24 132.9 12.6 92 18-109 7-98 (103)
67 2lkz_A RNA-binding protein 5; 99.8 3E-20 1E-24 132.3 9.5 84 22-105 5-94 (95)
68 2jrs_A RNA-binding protein 39; 99.8 8.3E-20 2.8E-24 134.0 11.8 85 268-352 23-107 (108)
69 2do4_A Squamous cell carcinoma 99.8 1.9E-19 6.4E-24 130.6 13.5 91 17-108 8-98 (100)
70 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-19 6.5E-24 134.1 13.9 94 16-109 5-98 (115)
71 1x5u_A Splicing factor 3B subu 99.8 8.1E-20 2.8E-24 133.8 11.6 86 268-353 12-97 (105)
72 2dnm_A SRP46 splicing factor; 99.8 5.9E-20 2E-24 134.0 10.8 85 269-353 11-95 (103)
73 3r27_A HnRNP L, heterogeneous 99.8 5.5E-20 1.9E-24 130.7 10.1 81 266-352 16-98 (100)
74 2cpz_A CUG triplet repeat RNA- 99.8 9.8E-20 3.3E-24 135.7 11.9 84 270-353 24-107 (115)
75 1x5t_A Splicing factor 3B subu 99.8 4.1E-20 1.4E-24 133.1 9.5 84 270-353 4-88 (96)
76 1oo0_B CG8781-PA, drosophila Y 99.8 6.3E-20 2.2E-24 135.6 10.7 87 268-354 23-109 (110)
77 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.2E-20 1.8E-24 134.1 10.1 85 269-353 10-94 (102)
78 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.2E-19 4.1E-24 128.1 11.5 83 24-106 4-86 (87)
79 2cqb_A Peptidyl-prolyl CIS-tra 99.8 9.3E-20 3.2E-24 132.8 11.3 92 18-109 4-95 (102)
80 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.4E-20 2.5E-24 145.3 11.6 85 269-353 70-154 (165)
81 3ns6_A Eukaryotic translation 99.8 1.1E-20 3.8E-25 136.8 6.2 82 270-351 5-93 (100)
82 3md1_A Nuclear and cytoplasmic 99.8 1.5E-19 5.2E-24 126.4 11.8 82 26-107 1-82 (83)
83 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-19 4.6E-24 129.8 11.7 89 16-104 6-94 (94)
84 1x5s_A Cold-inducible RNA-bind 99.8 7.9E-20 2.7E-24 133.1 10.6 85 269-353 10-94 (102)
85 2cpf_A RNA binding motif prote 99.8 6.3E-20 2.2E-24 132.6 9.6 84 270-353 4-90 (98)
86 2cpz_A CUG triplet repeat RNA- 99.8 2.8E-19 9.5E-24 133.2 13.4 91 19-109 18-108 (115)
87 2d9p_A Polyadenylate-binding p 99.8 2.7E-19 9.3E-24 130.5 13.0 83 269-353 13-95 (103)
88 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.7E-24 127.2 11.0 83 22-104 3-85 (85)
89 1x5u_A Splicing factor 3B subu 99.8 1.5E-19 5.1E-24 132.4 11.6 93 17-109 6-98 (105)
90 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-19 3.9E-24 132.3 10.9 91 19-109 5-95 (102)
91 1whw_A Hypothetical protein ri 99.8 1.7E-19 5.9E-24 130.6 11.7 88 22-109 4-91 (99)
92 2dnh_A Bruno-like 5, RNA bindi 99.8 3.7E-19 1.3E-23 130.3 13.5 84 269-353 13-99 (105)
93 2cph_A RNA binding motif prote 99.8 2E-19 6.7E-24 132.3 11.9 94 16-109 5-100 (107)
94 1p27_B RNA-binding protein 8A; 99.8 1.5E-19 5.2E-24 132.6 11.3 92 16-107 13-104 (106)
95 2dgs_A DAZ-associated protein 99.8 2.1E-19 7.1E-24 130.1 11.9 89 20-109 4-92 (99)
96 2div_A TRNA selenocysteine ass 99.8 7.4E-20 2.5E-24 132.5 9.5 86 269-354 7-97 (99)
97 4f25_A Polyadenylate-binding p 99.8 1E-19 3.6E-24 135.2 10.5 80 271-352 5-84 (115)
98 1x4h_A RNA-binding protein 28; 99.8 1.9E-19 6.6E-24 133.3 11.9 85 269-353 13-103 (111)
99 2cph_A RNA binding motif prote 99.8 2E-19 6.9E-24 132.2 11.8 85 269-353 13-99 (107)
100 2dgv_A HnRNP M, heterogeneous 99.8 1.7E-19 5.8E-24 128.7 11.0 84 270-355 7-90 (92)
101 2dnm_A SRP46 splicing factor; 99.8 1.3E-19 4.5E-24 132.1 10.6 91 19-109 6-96 (103)
102 2dng_A Eukaryotic translation 99.8 3.9E-19 1.3E-23 129.6 13.1 83 269-353 13-95 (103)
103 2d9p_A Polyadenylate-binding p 99.8 2.9E-19 1E-23 130.3 12.4 92 16-109 5-96 (103)
104 2x1f_A MRNA 3'-END-processing 99.8 1.9E-19 6.5E-24 129.5 11.2 84 25-108 1-84 (96)
105 3lqv_A PRE-mRNA branch site pr 99.8 4.7E-20 1.6E-24 137.4 8.2 105 23-138 5-109 (115)
106 2dnz_A Probable RNA-binding pr 99.8 2.4E-19 8.2E-24 128.8 11.6 87 23-109 2-88 (95)
107 2kxn_B Transformer-2 protein h 99.8 9.6E-20 3.3E-24 138.0 9.9 86 268-353 43-128 (129)
108 1x4h_A RNA-binding protein 28; 99.8 3.2E-19 1.1E-23 132.0 12.5 91 19-109 8-104 (111)
109 2kxn_B Transformer-2 protein h 99.8 9.9E-20 3.4E-24 137.9 9.8 91 17-107 37-127 (129)
110 1sjq_A Polypyrimidine tract-bi 99.8 5.4E-20 1.9E-24 132.1 7.9 80 269-354 14-95 (105)
111 1oo0_B CG8781-PA, drosophila Y 99.8 1.9E-19 6.6E-24 133.0 11.0 92 16-107 16-107 (110)
112 2jrs_A RNA-binding protein 39; 99.8 2.2E-19 7.4E-24 131.8 11.1 87 21-107 21-107 (108)
113 3ucg_A Polyadenylate-binding p 99.8 2.1E-19 7.1E-24 127.5 10.2 81 271-352 6-86 (89)
114 2dnh_A Bruno-like 5, RNA bindi 99.8 5.8E-19 2E-23 129.2 12.9 88 21-109 10-100 (105)
115 2cqp_A RNA-binding protein 12; 99.8 1.6E-19 5.4E-24 130.5 9.7 84 269-352 13-96 (98)
116 4a8x_A RNA-binding protein wit 99.8 1.7E-19 5.7E-24 127.7 9.6 83 270-352 3-86 (88)
117 1x5t_A Splicing factor 3B subu 99.8 2.1E-19 7.3E-24 129.3 10.3 87 23-109 2-89 (96)
118 2cq3_A RNA-binding protein 9; 99.8 7.7E-19 2.6E-23 128.1 13.4 85 268-354 12-96 (103)
119 2cpe_A RNA-binding protein EWS 99.8 3.8E-19 1.3E-23 132.0 12.0 93 17-109 6-106 (113)
120 2khc_A Testis-specific RNP-typ 99.8 2.8E-19 9.6E-24 133.8 11.2 82 268-349 37-118 (118)
121 2fy1_A RNA-binding motif prote 99.8 2.3E-19 8E-24 133.4 10.6 83 270-353 6-88 (116)
122 2la6_A RNA-binding protein FUS 99.8 5E-19 1.7E-23 128.1 12.1 86 19-104 6-99 (99)
123 2cqp_A RNA-binding protein 12; 99.8 2.8E-19 9.5E-24 129.2 10.8 89 18-106 7-95 (98)
124 2ywk_A Putative RNA-binding pr 99.8 2.2E-19 7.7E-24 128.9 10.2 80 270-350 15-94 (95)
125 2cqd_A RNA-binding region cont 99.8 3.6E-19 1.2E-23 132.8 11.7 84 268-352 14-97 (116)
126 2kt5_A RNA and export factor-b 99.8 5.3E-19 1.8E-23 133.5 12.7 86 267-353 31-116 (124)
127 2dng_A Eukaryotic translation 99.8 5.9E-19 2E-23 128.6 12.5 91 17-109 6-96 (103)
128 1wi8_A EIF-4B, eukaryotic tran 99.8 4.3E-19 1.5E-23 129.6 11.7 83 269-353 13-96 (104)
129 2dgp_A Bruno-like 4, RNA bindi 99.8 2.1E-19 7.2E-24 131.9 10.0 84 269-352 11-97 (106)
130 2div_A TRNA selenocysteine ass 99.8 2.9E-19 1E-23 129.3 10.6 87 21-107 4-95 (99)
131 3ulh_A THO complex subunit 4; 99.8 4.9E-19 1.7E-23 130.1 11.9 81 269-350 27-107 (107)
132 2dgx_A KIAA0430 protein; RRM d 99.8 2.7E-19 9.2E-24 128.5 10.3 82 270-354 8-93 (96)
133 1x4e_A RNA binding motif, sing 99.8 6E-20 2.1E-24 129.0 6.6 81 270-350 4-84 (85)
134 3ex7_B RNA-binding protein 8A; 99.8 2.4E-19 8.2E-24 135.9 10.4 87 268-354 19-105 (126)
135 2dh8_A DAZ-associated protein 99.8 1.7E-19 5.9E-24 132.0 9.2 86 268-354 13-98 (105)
136 3p5t_L Cleavage and polyadenyl 99.8 7.9E-20 2.7E-24 129.7 7.1 83 27-109 2-86 (90)
137 2ywk_A Putative RNA-binding pr 99.8 4.7E-19 1.6E-23 127.2 11.2 88 17-105 7-94 (95)
138 3s7r_A Heterogeneous nuclear r 99.8 5.8E-19 2E-23 124.5 11.5 79 269-348 9-87 (87)
139 2cpf_A RNA binding motif prote 99.8 4.5E-19 1.5E-23 128.1 11.1 87 23-109 2-91 (98)
140 2dgp_A Bruno-like 4, RNA bindi 99.8 4E-19 1.4E-23 130.3 10.9 91 18-108 5-98 (106)
141 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.2E-18 4.2E-23 127.0 13.4 89 19-109 8-96 (103)
142 2rs2_A Musashi-1, RNA-binding 99.8 2.7E-19 9.4E-24 131.5 9.9 86 269-355 23-108 (109)
143 2cpe_A RNA-binding protein EWS 99.8 4.2E-19 1.4E-23 131.8 11.0 85 269-353 13-105 (113)
144 2dh8_A DAZ-associated protein 99.8 4E-19 1.4E-23 130.1 10.7 93 16-109 6-98 (105)
145 2ki2_A SS-DNA binding protein 99.8 3.6E-20 1.2E-24 131.7 4.9 82 272-354 2-83 (90)
146 2ek1_A RNA-binding protein 12; 99.8 2.3E-19 7.7E-24 128.9 9.0 87 19-105 8-94 (95)
147 1x4d_A Matrin 3; structural ge 99.8 3.5E-19 1.2E-23 128.0 9.9 78 269-352 13-93 (102)
148 1u6f_A Tcubp1, RNA-binding pro 99.8 1.2E-18 4E-23 134.5 13.6 86 268-353 39-124 (139)
149 2cqd_A RNA-binding region cont 99.8 6.3E-19 2.2E-23 131.5 11.7 93 17-110 8-100 (116)
150 2cq1_A PTB-like protein L; RRM 99.8 1.1E-18 3.8E-23 125.6 12.3 79 269-353 13-93 (101)
151 1wi8_A EIF-4B, eukaryotic tran 99.8 6.5E-19 2.2E-23 128.7 11.3 88 20-109 9-97 (104)
152 2cq3_A RNA-binding protein 9; 99.8 1.8E-18 6E-23 126.1 13.6 92 16-109 5-96 (103)
153 2dgw_A Probable RNA-binding pr 99.8 1E-18 3.6E-23 124.3 12.0 80 270-352 9-88 (91)
154 3s7r_A Heterogeneous nuclear r 99.8 9.7E-19 3.3E-23 123.3 11.6 82 21-103 6-87 (87)
155 2cq1_A PTB-like protein L; RRM 99.8 1.4E-18 4.9E-23 125.0 12.4 90 14-109 3-94 (101)
156 1p1t_A Cleavage stimulation fa 99.8 2.7E-19 9.3E-24 130.8 8.7 88 21-108 3-90 (104)
157 1s79_A Lupus LA protein; RRM, 99.8 2.2E-19 7.6E-24 130.1 8.1 79 270-350 10-88 (103)
158 2ek1_A RNA-binding protein 12; 99.8 1.9E-19 6.5E-24 129.3 7.7 81 270-350 14-94 (95)
159 3ns6_A Eukaryotic translation 99.8 1.3E-19 4.4E-24 131.2 6.8 84 23-106 3-93 (100)
160 2ad9_A Polypyrimidine tract-bi 99.8 6E-19 2.1E-23 130.0 10.5 81 268-354 28-110 (119)
161 3n9u_C Cleavage and polyadenyl 99.8 3.2E-19 1.1E-23 139.5 9.5 82 270-351 54-137 (156)
162 2khc_A Testis-specific RNP-typ 99.8 6.5E-19 2.2E-23 131.8 10.8 85 20-104 34-118 (118)
163 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.4E-18 4.9E-23 126.6 12.3 83 269-353 13-95 (103)
164 2hvz_A Splicing factor, argini 99.8 2.8E-19 9.5E-24 129.9 8.4 91 27-122 1-101 (101)
165 2cqg_A TDP-43, TAR DNA-binding 99.8 1.8E-18 6.1E-23 126.1 12.8 83 269-353 13-95 (103)
166 1p1t_A Cleavage stimulation fa 99.8 3.1E-19 1E-23 130.5 8.6 83 270-352 7-89 (104)
167 2cpi_A CCR4-NOT transcription 99.8 4.4E-19 1.5E-23 131.0 9.5 84 270-353 14-103 (111)
168 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.7E-19 5.9E-24 130.6 7.1 82 269-352 17-99 (100)
169 2fy1_A RNA-binding motif prote 99.8 1E-18 3.4E-23 130.0 11.1 84 23-107 4-87 (116)
170 2do0_A HnRNP M, heterogeneous 99.8 2.7E-18 9.3E-23 127.6 13.5 82 269-351 13-94 (114)
171 1sjq_A Polypyrimidine tract-bi 99.8 5.6E-19 1.9E-23 126.8 9.3 83 21-109 11-95 (105)
172 2wbr_A GW182, gawky, LD47780P; 99.8 4.5E-19 1.5E-23 121.1 8.2 73 271-349 7-79 (89)
173 2dhg_A TRNA selenocysteine ass 99.8 5.4E-19 1.9E-23 129.2 9.3 82 270-352 8-91 (104)
174 3ucg_A Polyadenylate-binding p 99.8 1.1E-18 3.9E-23 123.6 10.7 83 24-107 4-86 (89)
175 2err_A Ataxin-2-binding protei 99.8 5.9E-19 2E-23 129.8 9.5 83 268-352 26-108 (109)
176 2m2b_A RNA-binding protein 10; 99.8 1.8E-19 6.3E-24 137.3 6.9 83 269-352 21-109 (131)
177 4a8x_A RNA-binding protein wit 99.8 8.5E-19 2.9E-23 124.0 9.9 83 25-107 3-86 (88)
178 1u6f_A Tcubp1, RNA-binding pro 99.8 3.1E-18 1.1E-22 132.0 13.9 91 19-109 35-125 (139)
179 2rs2_A Musashi-1, RNA-binding 99.8 1E-18 3.5E-23 128.5 10.6 92 16-108 15-106 (109)
180 2kt5_A RNA and export factor-b 99.8 3.7E-18 1.3E-22 128.8 14.0 87 21-108 30-116 (124)
181 2cqg_A TDP-43, TAR DNA-binding 99.8 4.1E-18 1.4E-22 124.2 13.7 90 18-109 7-96 (103)
182 1wex_A Hypothetical protein (r 99.8 1.4E-18 4.7E-23 125.9 11.1 79 269-353 13-93 (104)
183 2do0_A HnRNP M, heterogeneous 99.8 3.5E-18 1.2E-22 127.0 13.6 88 18-106 7-94 (114)
184 2dgv_A HnRNP M, heterogeneous 99.8 1.4E-18 4.9E-23 123.9 10.9 86 22-109 4-89 (92)
185 2dgw_A Probable RNA-binding pr 99.8 2.4E-18 8.3E-23 122.3 12.0 84 21-107 5-88 (91)
186 3r27_A HnRNP L, heterogeneous 99.8 1.3E-18 4.3E-23 123.7 10.4 80 21-106 16-97 (100)
187 1h2v_Z 20 kDa nuclear CAP bind 99.8 2.3E-18 7.7E-23 135.5 13.0 85 269-353 37-121 (156)
188 2dis_A Unnamed protein product 99.8 7.2E-19 2.5E-23 129.7 9.5 84 270-353 7-94 (109)
189 3ulh_A THO complex subunit 4; 99.8 2.1E-18 7.2E-23 126.7 11.9 85 19-104 22-106 (107)
190 1x4a_A Splicing factor, argini 99.8 2.4E-18 8.3E-23 126.8 12.2 82 269-353 20-101 (109)
191 2dgx_A KIAA0430 protein; RRM d 99.8 2E-18 6.9E-23 123.9 11.5 83 23-108 6-92 (96)
192 2mss_A Protein (musashi1); RNA 99.8 2.3E-19 7.9E-24 122.8 6.2 75 273-348 1-75 (75)
193 1x4b_A Heterogeneous nuclear r 99.8 1.1E-18 3.6E-23 130.2 10.0 93 16-109 17-109 (116)
194 2m2b_A RNA-binding protein 10; 99.8 5.3E-19 1.8E-23 134.7 8.5 91 17-108 14-110 (131)
195 1s79_A Lupus LA protein; RRM, 99.8 9.1E-19 3.1E-23 126.9 9.2 83 21-105 6-88 (103)
196 3ex7_B RNA-binding protein 8A; 99.8 1.1E-18 3.8E-23 132.2 10.0 90 19-108 15-104 (126)
197 2dhg_A TRNA selenocysteine ass 99.8 1.2E-18 4.1E-23 127.3 9.8 87 21-108 4-92 (104)
198 2cpj_A Non-POU domain-containi 99.8 2.2E-18 7.6E-23 124.6 10.9 80 269-354 13-92 (99)
199 1wex_A Hypothetical protein (r 99.8 2.3E-18 7.8E-23 124.7 10.7 89 15-109 4-94 (104)
200 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.5E-19 1.2E-23 122.5 6.2 76 272-348 1-76 (77)
201 2cq4_A RNA binding motif prote 99.8 9E-19 3.1E-23 130.2 8.8 86 21-107 20-105 (114)
202 2cq4_A RNA binding motif prote 99.8 4.5E-19 1.5E-23 131.8 7.2 81 270-351 24-104 (114)
203 2cpy_A RNA-binding protein 12; 99.8 1.1E-18 3.7E-23 129.6 9.1 88 18-107 7-95 (114)
204 2cpi_A CCR4-NOT transcription 99.8 2.1E-18 7.3E-23 127.3 10.6 90 18-107 7-102 (111)
205 1wez_A HnRNP H', FTP-3, hetero 99.8 2.7E-18 9.2E-23 124.4 10.9 81 269-352 13-93 (102)
206 2fc9_A NCL protein; structure 99.8 3.5E-18 1.2E-22 124.0 11.5 82 268-353 12-93 (101)
207 1wg5_A Heterogeneous nuclear r 99.8 3.6E-18 1.2E-22 124.5 11.3 83 269-353 13-96 (104)
208 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.6E-18 1.2E-22 132.0 12.0 88 16-103 53-140 (140)
209 2nlw_A Eukaryotic translation 99.8 1.2E-18 4E-23 127.3 8.6 81 269-351 13-100 (105)
210 2jwn_A Embryonic polyadenylate 99.8 1.9E-18 6.4E-23 130.5 10.0 82 270-352 35-116 (124)
211 3n9u_C Cleavage and polyadenyl 99.8 2.2E-18 7.4E-23 134.8 10.6 83 24-106 53-137 (156)
212 1x5o_A RNA binding motif, sing 99.8 7.7E-18 2.6E-22 125.1 13.2 82 269-351 23-112 (114)
213 1wez_A HnRNP H', FTP-3, hetero 99.8 2.4E-18 8.3E-23 124.6 10.1 86 20-108 9-94 (102)
214 1x4b_A Heterogeneous nuclear r 99.8 1.8E-18 6.3E-23 128.9 9.7 83 270-353 26-108 (116)
215 1h2v_Z 20 kDa nuclear CAP bind 99.8 4.9E-18 1.7E-22 133.6 12.7 88 21-108 34-121 (156)
216 1x4e_A RNA binding motif, sing 99.8 3.4E-19 1.2E-23 125.1 5.4 82 23-104 2-83 (85)
217 1x4f_A Matrin 3; structural ge 99.8 2.4E-18 8.4E-23 125.3 10.0 79 268-352 22-103 (112)
218 2wbr_A GW182, gawky, LD47780P; 99.8 3E-18 1E-22 117.1 9.7 74 24-103 5-78 (89)
219 2a3j_A U1 small nuclear ribonu 99.8 1.9E-18 6.4E-23 129.8 9.6 80 270-352 28-111 (127)
220 2lea_A Serine/arginine-rich sp 99.8 8.8E-19 3E-23 133.9 7.8 93 17-109 38-130 (135)
221 2dnq_A RNA-binding protein 4B; 99.8 4.5E-18 1.5E-22 120.7 11.0 77 269-353 6-82 (90)
222 1wg5_A Heterogeneous nuclear r 99.8 2.7E-18 9.2E-23 125.2 10.1 89 17-107 6-95 (104)
223 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.7E-18 9.4E-23 132.6 10.7 81 268-348 60-140 (140)
224 2cpy_A RNA-binding protein 12; 99.8 1.2E-18 4.1E-23 129.3 8.0 83 268-352 12-95 (114)
225 2jvr_A Nucleolar protein 3; RN 99.8 1.1E-18 3.9E-23 127.6 7.6 80 270-353 27-107 (111)
226 2fc9_A NCL protein; structure 99.8 5.4E-18 1.8E-22 123.1 11.2 89 17-109 6-94 (101)
227 2err_A Ataxin-2-binding protei 99.8 4.5E-18 1.5E-22 125.1 10.8 86 19-106 22-107 (109)
228 2ad9_A Polypyrimidine tract-bi 99.8 5.1E-18 1.8E-22 125.0 10.9 84 20-109 25-110 (119)
229 1why_A Hypothetical protein ri 99.8 5.2E-18 1.8E-22 122.2 10.8 79 269-353 15-95 (97)
230 1x4a_A Splicing factor, argini 99.8 1.3E-17 4.5E-22 122.8 13.1 87 20-109 16-102 (109)
231 2mss_A Protein (musashi1); RNA 99.8 1.2E-18 3.9E-23 119.3 6.9 75 28-103 1-75 (75)
232 2db1_A Heterogeneous nuclear r 99.8 3.8E-18 1.3E-22 127.3 10.1 80 269-350 15-97 (118)
233 1x4d_A Matrin 3; structural ge 99.8 2.9E-18 9.8E-23 123.2 9.0 80 22-107 11-93 (102)
234 2fc8_A NCL protein; structure 99.8 9.2E-18 3.1E-22 122.1 11.9 83 268-353 12-94 (102)
235 1x5o_A RNA binding motif, sing 99.8 1E-17 3.4E-22 124.5 12.3 86 20-106 19-112 (114)
236 2a3j_A U1 small nuclear ribonu 99.8 3.7E-18 1.3E-22 128.2 9.9 86 21-109 24-113 (127)
237 3pgw_S U1-70K; protein-RNA com 99.8 4.5E-18 1.5E-22 155.0 12.5 84 269-352 100-183 (437)
238 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.4E-18 4.8E-23 119.5 6.8 76 27-103 1-76 (77)
239 2cpj_A Non-POU domain-containi 99.8 8E-18 2.7E-22 121.7 11.1 87 16-108 5-91 (99)
240 2jwn_A Embryonic polyadenylate 99.8 1.8E-18 6E-23 130.7 7.8 86 23-109 33-118 (124)
241 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.6E-18 2.6E-22 133.6 11.9 89 20-108 66-154 (165)
242 2db1_A Heterogeneous nuclear r 99.8 8.3E-18 2.8E-22 125.4 11.3 84 21-106 12-98 (118)
243 2j76_E EIF-4B, EIF4B, eukaryot 99.8 9.7E-19 3.3E-23 126.6 6.0 86 20-107 13-99 (100)
244 2fc8_A NCL protein; structure 99.7 1.3E-17 4.5E-22 121.3 12.1 89 18-109 7-95 (102)
245 2dnn_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 124.4 9.3 78 270-350 15-92 (109)
246 1fj7_A Nucleolin RBD1, protein 99.7 3.9E-19 1.3E-23 129.2 3.8 84 269-354 15-98 (101)
247 1wel_A RNA-binding protein 12; 99.7 2.6E-18 9.1E-23 129.5 8.5 82 269-351 23-104 (124)
248 2krb_A Eukaryotic translation 99.7 1.2E-18 4.1E-23 121.0 6.1 73 271-345 1-80 (81)
249 2dnn_A RNA-binding protein 12; 99.7 4.2E-18 1.4E-22 124.3 9.2 84 20-106 10-93 (109)
250 2hgl_A HNRPF protein, heteroge 99.7 3.1E-18 1.1E-22 130.1 8.8 79 270-350 43-124 (136)
251 1wel_A RNA-binding protein 12; 99.7 2.6E-18 8.9E-23 129.6 8.2 85 21-106 20-104 (124)
252 2hgl_A HNRPF protein, heteroge 99.7 4.8E-18 1.6E-22 129.0 9.6 85 20-106 38-125 (136)
253 1why_A Hypothetical protein ri 99.7 1.1E-17 3.9E-22 120.4 11.1 82 20-107 11-94 (97)
254 1x4c_A Splicing factor, argini 99.7 2.1E-17 7.1E-22 121.4 12.6 83 19-108 8-95 (108)
255 2nlw_A Eukaryotic translation 99.7 7.6E-18 2.6E-22 123.0 10.2 83 22-106 11-100 (105)
256 2cpx_A Hypothetical protein FL 99.7 1.4E-18 5E-23 129.3 6.5 85 269-353 23-107 (115)
257 2dnq_A RNA-binding protein 4B; 99.7 1.2E-17 4.2E-22 118.4 11.0 80 22-109 4-83 (90)
258 2dis_A Unnamed protein product 99.7 4.7E-18 1.6E-22 125.3 9.0 87 23-109 5-95 (109)
259 2ytc_A PRE-mRNA-splicing facto 99.7 7.3E-18 2.5E-22 118.3 9.6 75 269-349 10-85 (85)
260 2jvo_A Nucleolar protein 3; nu 99.7 6.5E-18 2.2E-22 123.8 9.5 78 269-354 29-106 (108)
261 2ki2_A SS-DNA binding protein 99.7 1E-18 3.5E-23 124.1 4.8 81 27-108 2-82 (90)
262 1x4c_A Splicing factor, argini 99.7 2E-17 6.8E-22 121.5 11.9 77 270-353 14-95 (108)
263 2xnq_A Nuclear polyadenylated 99.7 1.4E-17 4.8E-22 119.6 10.7 76 269-352 20-96 (97)
264 1whx_A Hypothetical protein ri 99.7 6.3E-18 2.1E-22 124.6 8.9 77 270-352 9-85 (111)
265 2jvo_A Nucleolar protein 3; nu 99.7 1.4E-17 4.8E-22 122.0 10.6 85 16-108 21-105 (108)
266 2e5j_A Methenyltetrahydrofolat 99.7 1E-17 3.4E-22 120.6 9.7 80 269-353 17-96 (97)
267 2dgt_A RNA-binding protein 30; 99.7 2.9E-17 9.9E-22 117.0 12.0 82 20-109 4-85 (92)
268 2dgt_A RNA-binding protein 30; 99.7 2.2E-17 7.5E-22 117.6 11.2 77 269-353 8-84 (92)
269 1x4g_A Nucleolysin TIAR; struc 99.7 8.6E-18 2.9E-22 123.7 9.4 78 270-353 24-101 (109)
270 1nu4_A U1A RNA binding domain; 99.7 3.4E-18 1.2E-22 123.2 6.9 80 270-352 7-90 (97)
271 3lqv_A PRE-mRNA branch site pr 99.7 1E-17 3.5E-22 124.7 9.7 78 270-350 7-84 (115)
272 2cpx_A Hypothetical protein FL 99.7 6.4E-18 2.2E-22 125.8 8.5 89 21-109 20-108 (115)
273 2ytc_A PRE-mRNA-splicing facto 99.7 1.8E-17 6.2E-22 116.2 10.3 80 19-104 5-85 (85)
274 2lmi_A GRSF-1, G-rich sequence 99.7 3.2E-18 1.1E-22 125.4 6.6 80 269-350 9-91 (107)
275 2la4_A Nuclear and cytoplasmic 99.7 6.1E-18 2.1E-22 122.8 7.8 76 270-351 26-101 (101)
276 2jvr_A Nucleolar protein 3; RN 99.7 1.2E-17 3.9E-22 122.2 9.2 81 22-106 24-105 (111)
277 1x4g_A Nucleolysin TIAR; struc 99.7 1.1E-17 3.8E-22 123.2 9.2 83 21-109 20-102 (109)
278 1fj7_A Nucleolin RBD1, protein 99.7 2.3E-18 7.8E-23 125.0 5.3 86 21-108 12-97 (101)
279 2e5j_A Methenyltetrahydrofolat 99.7 2.6E-17 8.7E-22 118.5 10.7 82 21-107 14-95 (97)
280 2f3j_A RNA and export factor b 99.7 9.7E-18 3.3E-22 134.0 9.3 86 267-353 84-169 (177)
281 1iqt_A AUF1, heterogeneous nuc 99.7 1.3E-18 4.4E-23 119.0 3.7 75 273-348 1-75 (75)
282 2cpd_A Apobec-1 stimulating pr 99.7 5.8E-17 2E-21 117.1 12.6 85 17-109 6-92 (99)
283 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-17 3.6E-22 120.3 8.3 79 270-353 15-93 (96)
284 3q2s_C Cleavage and polyadenyl 99.7 8.8E-18 3E-22 140.1 9.0 81 270-350 67-149 (229)
285 2j8a_A Histone-lysine N-methyl 99.7 1E-17 3.6E-22 122.1 8.2 79 272-350 3-95 (136)
286 2kvi_A Nuclear polyadenylated 99.7 1.5E-17 5.3E-22 119.3 9.1 77 270-354 9-86 (96)
287 2xnq_A Nuclear polyadenylated 99.7 4.2E-17 1.4E-21 117.1 11.4 82 17-106 13-95 (97)
288 1nu4_A U1A RNA binding domain; 99.7 1.1E-17 3.7E-22 120.6 8.2 85 22-109 4-92 (97)
289 2hvz_A Splicing factor, argini 99.7 6.4E-18 2.2E-22 122.7 6.8 76 272-352 1-76 (101)
290 2dnp_A RNA-binding protein 14; 99.7 2.2E-17 7.4E-22 117.1 9.3 77 269-353 7-83 (90)
291 1iqt_A AUF1, heterogeneous nuc 99.7 4.6E-18 1.6E-22 116.2 5.7 75 28-103 1-75 (75)
292 2cpd_A Apobec-1 stimulating pr 99.7 6.9E-17 2.4E-21 116.7 12.1 77 269-353 13-91 (99)
293 2dnp_A RNA-binding protein 14; 99.7 4.5E-17 1.5E-21 115.5 10.9 80 21-108 4-83 (90)
294 2pe8_A Splicing factor 45; RRM 99.7 4E-17 1.4E-21 118.4 10.8 82 269-350 6-93 (105)
295 2la4_A Nuclear and cytoplasmic 99.7 2.2E-17 7.6E-22 119.8 9.4 78 22-105 23-100 (101)
296 2lcw_A RNA-binding protein FUS 99.6 3.8E-19 1.3E-23 132.6 0.0 83 270-352 6-96 (116)
297 2dgu_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 119.4 10.1 76 270-353 10-85 (103)
298 2cq2_A Hypothetical protein LO 99.7 1.1E-17 3.8E-22 121.8 7.6 78 270-353 24-108 (114)
299 1x4f_A Matrin 3; structural ge 99.7 2.1E-17 7E-22 120.4 8.9 81 22-108 21-104 (112)
300 1fjc_A Nucleolin RBD2, protein 99.7 2.2E-17 7.5E-22 118.7 9.0 84 20-108 10-93 (96)
301 2diu_A KIAA0430 protein; struc 99.7 2.5E-17 8.6E-22 113.5 8.7 72 271-352 8-85 (96)
302 2krb_A Eukaryotic translation 99.7 6.1E-18 2.1E-22 117.4 5.6 73 26-100 1-80 (81)
303 2e44_A Insulin-like growth fac 99.7 2.7E-17 9.1E-22 118.2 9.2 80 270-353 14-94 (96)
304 3zzy_A Polypyrimidine tract-bi 99.7 5E-17 1.7E-21 121.1 10.9 76 272-352 29-107 (130)
305 2e44_A Insulin-like growth fac 99.7 3.7E-17 1.3E-21 117.5 9.8 82 21-106 10-92 (96)
306 2lmi_A GRSF-1, G-rich sequence 99.7 7.5E-18 2.6E-22 123.5 6.1 84 21-106 6-92 (107)
307 2xs2_A Deleted in azoospermia- 99.7 1.1E-17 3.7E-22 121.7 6.8 80 270-352 8-87 (102)
308 2dgu_A Heterogeneous nuclear r 99.7 7.6E-17 2.6E-21 117.3 11.3 81 21-109 6-86 (103)
309 2e5i_A Heterogeneous nuclear r 99.7 1.5E-16 5.2E-21 118.2 12.8 75 272-352 26-103 (124)
310 1wf1_A RNA-binding protein RAL 99.7 1.2E-16 4E-21 117.8 12.1 79 22-108 23-102 (110)
311 2dha_A FLJ20171 protein; RRM d 99.7 1.5E-17 5E-22 124.1 7.1 79 270-350 22-104 (123)
312 1whx_A Hypothetical protein ri 99.7 2.2E-17 7.4E-22 121.7 7.6 79 22-106 6-84 (111)
313 2cqh_A IGF-II mRNA-binding pro 99.7 5.1E-17 1.8E-21 115.9 9.4 81 22-109 4-86 (93)
314 2cqh_A IGF-II mRNA-binding pro 99.7 2.2E-17 7.4E-22 117.9 7.4 77 270-353 7-85 (93)
315 1x5p_A Negative elongation fac 99.7 1.7E-16 5.8E-21 114.1 12.1 77 269-353 13-89 (97)
316 2xs2_A Deleted in azoospermia- 99.7 1.9E-17 6.5E-22 120.4 7.2 82 22-106 5-86 (102)
317 1wg1_A KIAA1579 protein, homol 99.7 5.5E-17 1.9E-21 114.4 9.3 77 270-353 4-80 (88)
318 1sjr_A Polypyrimidine tract-bi 99.7 6.5E-17 2.2E-21 125.2 10.4 79 270-352 45-125 (164)
319 2e5g_A U6 snRNA-specific termi 99.7 6.2E-17 2.1E-21 115.7 9.6 78 270-353 7-84 (94)
320 2kvi_A Nuclear polyadenylated 99.7 4.2E-17 1.4E-21 117.0 8.6 80 22-109 6-86 (96)
321 1wf1_A RNA-binding protein RAL 99.7 6.7E-17 2.3E-21 119.1 9.9 75 270-352 26-101 (110)
322 3q2s_C Cleavage and polyadenyl 99.7 2.6E-17 8.9E-22 137.2 8.5 82 25-106 67-150 (229)
323 2lcw_A RNA-binding protein FUS 99.5 1.1E-18 3.8E-23 130.1 0.0 88 22-109 3-98 (116)
324 3egn_A RNA-binding protein 40; 99.7 9.7E-18 3.3E-22 129.9 5.3 82 268-352 42-131 (143)
325 2hgn_A Heterogeneous nuclear r 99.7 7E-18 2.4E-22 128.5 4.2 80 270-352 45-124 (139)
326 2hgm_A HNRPF protein, heteroge 99.7 2.5E-17 8.7E-22 123.0 7.0 84 19-105 35-120 (126)
327 2hgm_A HNRPF protein, heteroge 99.7 3.5E-17 1.2E-21 122.2 7.7 79 270-351 41-121 (126)
328 2dha_A FLJ20171 protein; RRM d 99.7 3.4E-17 1.2E-21 122.1 7.5 81 23-105 20-104 (123)
329 2f3j_A RNA and export factor b 99.7 1.6E-16 5.3E-21 127.0 11.5 85 22-107 84-168 (177)
330 1x5p_A Negative elongation fac 99.7 3.2E-16 1.1E-20 112.6 12.0 82 19-108 8-89 (97)
331 1wg1_A KIAA1579 protein, homol 99.7 1.6E-16 5.3E-21 112.1 9.9 77 23-106 2-78 (88)
332 2hgn_A Heterogeneous nuclear r 99.7 1.8E-17 6.2E-22 126.3 4.4 85 21-108 41-125 (139)
333 2diu_A KIAA0430 protein; struc 99.7 2.1E-16 7E-21 108.9 9.1 75 25-109 7-87 (96)
334 2e5g_A U6 snRNA-specific termi 99.7 2.3E-16 8E-21 112.7 9.8 80 23-108 5-84 (94)
335 3egn_A RNA-binding protein 40; 99.7 5.9E-17 2E-21 125.4 7.2 86 22-107 41-131 (143)
336 3d2w_A TAR DNA-binding protein 99.7 1.9E-16 6.7E-21 111.5 8.8 74 270-352 10-85 (89)
337 1sjr_A Polypyrimidine tract-bi 99.7 3.9E-16 1.3E-20 120.8 11.1 81 23-107 43-125 (164)
338 3zzy_A Polypyrimidine tract-bi 99.7 6.4E-16 2.2E-20 115.2 11.4 81 22-107 24-107 (130)
339 2j8a_A Histone-lysine N-methyl 99.7 2.7E-16 9.2E-21 114.7 8.8 81 26-106 2-96 (136)
340 3beg_B Splicing factor, argini 99.7 1.9E-16 6.7E-21 117.4 7.9 76 270-352 15-95 (115)
341 2pe8_A Splicing factor 45; RRM 99.7 1.2E-15 4.1E-20 110.6 11.2 83 23-105 5-93 (105)
342 2cq2_A Hypothetical protein LO 99.6 3.8E-16 1.3E-20 113.7 8.5 79 22-106 21-106 (114)
343 2dnl_A Cytoplasmic polyadenyla 99.6 4.2E-16 1.4E-20 115.5 8.6 74 270-346 7-83 (114)
344 2e5i_A Heterogeneous nuclear r 99.6 2.2E-15 7.4E-20 111.9 12.1 75 27-107 26-103 (124)
345 3d2w_A TAR DNA-binding protein 99.6 7.9E-16 2.7E-20 108.4 9.1 78 21-107 6-85 (89)
346 2hzc_A Splicing factor U2AF 65 99.6 6.9E-16 2.4E-20 108.6 8.6 73 23-102 3-86 (87)
347 2bz2_A Negative elongation fac 99.6 8.4E-16 2.9E-20 114.7 9.3 77 269-353 37-113 (121)
348 2dnl_A Cytoplasmic polyadenyla 99.6 7.8E-16 2.7E-20 114.0 8.9 80 22-104 4-86 (114)
349 3v4m_A Splicing factor U2AF 65 99.6 7.4E-16 2.5E-20 111.7 8.6 81 270-350 4-96 (105)
350 3beg_B Splicing factor, argini 99.6 5E-16 1.7E-20 115.2 7.4 78 23-107 13-95 (115)
351 3u1l_A PRE-mRNA-splicing facto 99.6 5.3E-16 1.8E-20 128.4 8.1 80 269-354 132-232 (240)
352 3pgw_S U1-70K; protein-RNA com 99.6 1.5E-15 5.2E-20 138.3 11.7 85 23-107 99-183 (437)
353 3ue2_A Poly(U)-binding-splicin 99.6 1.9E-15 6.6E-20 111.6 9.7 80 270-349 19-107 (118)
354 2bz2_A Negative elongation fac 99.6 2.4E-15 8.4E-20 112.2 9.8 80 21-108 34-113 (121)
355 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.8E-20 107.6 7.5 71 270-347 5-86 (87)
356 2voo_A Lupus LA protein; RNA-b 99.6 2.5E-15 8.7E-20 121.8 10.6 78 271-350 109-186 (193)
357 1wf0_A TDP-43, TAR DNA-binding 99.6 6.7E-16 2.3E-20 108.9 5.8 77 270-353 4-80 (88)
358 2dit_A HIV TAT specific factor 99.6 7.4E-15 2.5E-19 108.3 11.5 81 268-352 12-103 (112)
359 1wf0_A TDP-43, TAR DNA-binding 99.6 8.9E-16 3E-20 108.2 6.2 79 24-109 3-81 (88)
360 2dit_A HIV TAT specific factor 99.6 1.4E-14 4.8E-19 106.8 11.8 87 18-108 7-104 (112)
361 2voo_A Lupus LA protein; RNA-b 99.6 1.1E-14 3.7E-19 118.1 11.0 80 25-106 108-187 (193)
362 1jmt_A Splicing factor U2AF 35 99.6 1.4E-15 4.9E-20 110.1 4.0 73 276-349 20-104 (104)
363 3v4m_A Splicing factor U2AF 65 99.5 2.2E-14 7.4E-19 104.0 8.8 83 23-105 2-96 (105)
364 3u1l_A PRE-mRNA-splicing facto 99.5 1.4E-14 4.7E-19 120.0 8.2 81 21-107 129-230 (240)
365 3s6e_A RNA-binding protein 39; 99.5 8.5E-14 2.9E-18 102.0 9.3 77 269-349 5-91 (114)
366 3ue2_A Poly(U)-binding-splicin 99.5 1E-13 3.5E-18 102.3 9.8 82 24-105 18-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.2E-13 7.5E-18 97.3 10.8 76 271-353 10-92 (100)
368 1jmt_A Splicing factor U2AF 35 99.5 3.6E-14 1.2E-18 102.7 4.2 72 31-103 20-103 (104)
369 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.7E-12 5.8E-17 92.6 11.1 79 23-108 7-92 (100)
370 3tht_A Alkylated DNA repair pr 99.4 7.1E-13 2.4E-17 115.7 8.5 76 268-349 15-97 (345)
371 3s6e_A RNA-binding protein 39; 99.4 3.7E-12 1.3E-16 93.2 9.8 78 23-104 4-91 (114)
372 3tht_A Alkylated DNA repair pr 99.3 3.7E-12 1.3E-16 111.1 8.7 77 22-104 14-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 1.4E-11 4.8E-16 84.1 8.4 73 270-351 6-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 4.8E-11 1.6E-15 87.2 9.4 74 269-348 16-93 (121)
375 1owx_A Lupus LA protein, SS-B, 99.2 9.3E-11 3.2E-15 85.7 8.5 78 21-104 13-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.2 1.4E-10 4.8E-15 79.2 8.4 77 22-107 3-87 (91)
377 3dxb_A Thioredoxin N-terminall 99.1 2.3E-10 8E-15 95.1 10.6 77 273-349 126-211 (222)
378 1ufw_A Synaptojanin 2; RNP dom 99.1 2.1E-10 7.1E-15 78.7 6.2 72 270-350 14-94 (95)
379 1ufw_A Synaptojanin 2; RNP dom 99.1 4.1E-10 1.4E-14 77.2 6.8 78 19-105 8-94 (95)
380 2l9w_A U4/U6 snRNA-associated- 98.9 7.3E-09 2.5E-13 72.3 8.0 71 270-346 20-95 (117)
381 3dxb_A Thioredoxin N-terminall 98.8 7.5E-09 2.6E-13 85.9 8.5 79 26-104 124-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.6 5.8E-07 2E-11 62.8 9.9 73 25-103 20-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.5 2.8E-06 9.5E-11 59.0 10.6 90 23-125 5-99 (104)
384 1wey_A Calcipressin 1; structu 98.1 8.1E-06 2.8E-10 57.0 5.9 74 272-351 6-84 (104)
385 1uw4_A UPF3X; nonsense mediate 98.0 2.8E-05 9.5E-10 53.4 8.4 69 27-95 2-72 (91)
386 1wey_A Calcipressin 1; structu 97.9 4.2E-05 1.4E-09 53.4 6.9 75 26-106 5-84 (104)
387 1whv_A Poly(A)-specific ribonu 97.9 0.00013 4.3E-09 50.0 8.9 58 22-88 12-69 (100)
388 2dhx_A Poly (ADP-ribose) polym 97.9 0.00033 1.1E-08 48.6 11.0 74 270-352 7-85 (104)
389 1uw4_A UPF3X; nonsense mediate 97.8 0.00039 1.3E-08 47.7 10.2 82 272-353 2-90 (91)
390 1wwh_A Nucleoporin 35, nucleop 97.6 0.00024 8.2E-09 51.1 7.5 71 270-348 23-94 (119)
391 1whv_A Poly(A)-specific ribonu 97.6 0.00046 1.6E-08 47.3 8.3 56 270-334 15-70 (100)
392 1wwh_A Nucleoporin 35, nucleop 97.6 0.0004 1.4E-08 49.9 8.1 81 15-103 13-94 (119)
393 3ctr_A Poly(A)-specific ribonu 97.4 0.00037 1.3E-08 47.9 6.0 53 28-89 8-60 (101)
394 3ctr_A Poly(A)-specific ribonu 97.4 0.0004 1.4E-08 47.7 5.7 53 273-334 8-60 (101)
395 2l08_A Regulator of nonsense t 97.3 0.00027 9.2E-09 48.8 4.5 72 24-95 7-80 (97)
396 3p3d_A Nucleoporin 53; structu 97.0 0.00097 3.3E-08 48.6 4.8 77 271-349 7-97 (132)
397 3p3d_A Nucleoporin 53; structu 96.8 0.0018 6.2E-08 47.2 5.1 79 25-105 6-98 (132)
398 2l08_A Regulator of nonsense t 96.7 0.0048 1.7E-07 42.5 6.2 77 273-349 11-94 (97)
399 3pq1_A Poly(A) RNA polymerase; 96.1 0.0039 1.3E-07 56.4 4.0 56 24-85 51-106 (464)
400 3pq1_A Poly(A) RNA polymerase; 96.0 0.0039 1.3E-07 56.4 3.5 54 272-331 54-107 (464)
401 3d45_A Poly(A)-specific ribonu 92.5 0.43 1.5E-05 44.0 8.6 56 26-90 440-495 (507)
402 3d45_A Poly(A)-specific ribonu 86.7 2.9 0.0001 38.5 9.0 55 114-191 441-495 (507)
403 4eyt_A Telomerase associated p 77.5 13 0.00044 24.6 8.0 60 22-89 8-67 (129)
404 2g0c_A ATP-dependent RNA helic 58.6 14 0.00046 23.7 4.1 59 37-104 12-75 (76)
405 2g0c_A ATP-dependent RNA helic 58.6 24 0.00081 22.5 5.3 60 281-349 11-75 (76)
406 4e8u_A Putative uncharacterize 58.1 27 0.00092 26.7 6.1 56 273-331 14-81 (172)
407 4eyt_A Telomerase associated p 57.8 38 0.0013 22.4 8.5 56 270-333 11-66 (129)
408 4e8u_A Putative uncharacterize 41.3 73 0.0025 24.3 6.1 55 28-85 14-80 (172)
409 2v94_A RPS24, 30S ribosomal pr 36.3 48 0.0016 23.1 4.1 48 36-84 37-89 (107)
410 3j21_T 50S ribosomal protein L 33.4 1.1E+02 0.0036 20.3 5.4 56 274-332 25-82 (86)
411 1xn9_A 30S ribosomal protein S 32.7 41 0.0014 23.1 3.2 49 36-85 28-81 (101)
412 1ywx_A 30S ribosomal protein S 31.9 39 0.0013 23.3 3.0 47 36-83 28-79 (102)
413 2g1d_A 30S ribosomal protein S 30.4 46 0.0016 22.7 3.2 48 36-84 29-81 (98)
414 2okq_A Hypothetical protein YB 30.2 68 0.0023 23.4 4.1 62 128-189 49-110 (141)
415 1ytr_A Bacteriocin plantaricin 27.5 33 0.0011 16.1 1.4 12 40-51 14-25 (26)
416 4a8j_B Elongator complex prote 26.8 1.8E+02 0.0061 23.9 6.5 48 27-74 167-222 (270)
417 2xzm_P RPS24E; ribosome, trans 24.9 1.1E+02 0.0038 22.6 4.5 48 36-84 31-83 (149)
418 1vq8_S 50S ribosomal protein L 22.7 1.4E+02 0.0046 19.7 4.3 54 29-85 24-79 (85)
419 3u5c_Y RP50, 40S ribosomal pro 21.9 1.1E+02 0.0037 22.3 4.0 47 36-83 33-84 (135)
420 3fry_A Probable copper-exporti 20.6 1.5E+02 0.0053 17.9 5.8 54 272-332 7-60 (73)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.3e-48 Score=339.70 Aligned_cols=259 Identities=20% Similarity=0.342 Sum_probs=216.4
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
.......++++++|||+|||.++++++|+++|+.||.|.+|.++++.. + ++|||||+|.+.++|.+|+ .++|..+.|
T Consensus 31 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-~-~~g~afV~f~~~~~A~~A~-~~~~~~~~g 107 (292)
T 2ghp_A 31 ANEALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-K-NFRFARIEFARYDGALAAI-TKTHKVVGQ 107 (292)
T ss_dssp -----------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-S-SSEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred cccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-C-CcEEEEEEECCHHHHHHHH-HhCCcEeCC
Confidence 344556688899999999999999999999999999999999999863 2 5799999999999999999 599999999
Q ss_pred eEEEEEecCCCcccccccceEEcCCCCCCCHHHHHHhhcccC-CeEEEEEecccccccccccccCCCCCCCCCcccEEEE
Q psy9313 96 KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYG-TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174 (356)
Q Consensus 96 ~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV 174 (356)
+.|.|.++. .++|||+|||..+++++|+++|+.|| .|..+.++.+..+ .++|+|||
T Consensus 108 ~~i~v~~~~-------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~----------------~~~g~afV 164 (292)
T 2ghp_A 108 NEIIVSHLT-------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFN----------------TSRRFAYI 164 (292)
T ss_dssp EECEEEECC-------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-----------------------CCEEEE
T ss_pred cEEEEEECC-------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCC----------------CcceEEEE
Confidence 999999874 78899999999999999999999999 9999999887643 57999999
Q ss_pred EeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCcccc
Q psy9313 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTA 254 (356)
Q Consensus 175 ~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (356)
+|.+.++|.+|+..++|..+.| +.+.+.++.+.......
T Consensus 165 ~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~~~~~~--------------------------------------- 203 (292)
T 2ghp_A 165 DVTSKEDARYCVEKLNGLKIEG--YTLVTKVSNPLEKSKRT--------------------------------------- 203 (292)
T ss_dssp ECSSHHHHHHHHHHHTTCEETT--EECEEEECCCC---------------------------------------------
T ss_pred EECCHHHHHHHHHHhCCCEeCC--cEEEEEECCCCcccccc---------------------------------------
Confidence 9999999999999999999999 88999887654322110
Q ss_pred ccccCCCCCCCCCCCCCcEEEEecCCCC-CcHHHHHHhhcCCCceeEEEEeeCCC-CCCcceEEEEEEccHHHHHHHHHH
Q psy9313 255 DLLNNSMLPPKSLHGSGWCIFVYNLAPE-TEDNVLWQLFGPFGAVQNVKVVRDPQ-TYKCKGFGFVCMTNYDEAVFAIQS 332 (356)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~-~~~~~g~afV~f~~~~~A~~a~~~ 332 (356)
......+++|+|+|||+. +++++|+++|++||.|.+|.++.++. ||.++|+|||+|.+.++|.+|+ .
T Consensus 204 ----------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 204 ----------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp -------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred ----------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 001225668999999999 99999999999999999999999877 6899999999999999999999 9
Q ss_pred hCCcccCCeeEEEEEecCCC
Q psy9313 333 LNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 333 l~g~~l~gr~l~v~~a~~~~ 352 (356)
|||..|+|+.|.|.||.+++
T Consensus 273 l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 273 MNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp GTTEEETTEEEEEEECCCCC
T ss_pred hcCCEECCcEEEEEEecCCC
Confidence 99999999999999999875
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.9e-47 Score=333.50 Aligned_cols=247 Identities=23% Similarity=0.351 Sum_probs=221.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
..++++|||+|||.++|+++|+++|+.|| |.++.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34679999999999999999999999999 888887 45678999999999999999999999999999999999
Q ss_pred cCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHH
Q psy9313 103 ARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEA 182 (356)
Q Consensus 103 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a 182 (356)
+.+ ..+|||+|||.++|+++|+++|+.||.|..+.++.+..++ .++|+|||+|.+.++|
T Consensus 92 ~~~------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g---------------~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 92 QPT------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG---------------QSKGYGFAEYMKKDSA 150 (284)
T ss_dssp CCC------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC---------------CEEEEEEEEESSHHHH
T ss_pred cCC------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC---------------ccceEEEEEECCHHHH
Confidence 753 5789999999999999999999999999999998876543 5799999999999999
Q ss_pred HHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCC
Q psy9313 183 EHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSML 262 (356)
Q Consensus 183 ~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (356)
.+|+..++|..+.| +.+.+.++......
T Consensus 151 ~~A~~~l~~~~~~g--~~i~v~~a~~~~~~-------------------------------------------------- 178 (284)
T 3smz_A 151 ARAKSDLLGKPLGP--RTLYVHWTDAGQLT-------------------------------------------------- 178 (284)
T ss_dssp HHHHHHHTTCEETT--EECEEEECCGGGCC--------------------------------------------------
T ss_pred HHHHHHhCCCEeCC--cEEEEEECCCCCCC--------------------------------------------------
Confidence 99999999999998 88999887643210
Q ss_pred CCCCCCCCCcEEEEecCCCCC-cHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe
Q psy9313 263 PPKSLHGSGWCIFVYNLAPET-EDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR 341 (356)
Q Consensus 263 ~~~~~~~~~~~l~V~nlp~~~-t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr 341 (356)
......++|+|+|||+.+ ++++|+++|++||.|.++.++.++ +|.++|+|||+|.+.++|.+|+..|||..|+|+
T Consensus 179 ---~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 254 (284)
T 3smz_A 179 ---PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGS 254 (284)
T ss_dssp ---TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred ---cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe
Confidence 001245689999999995 999999999999999999999987 689999999999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q psy9313 342 LLQVSFKTHKPL 353 (356)
Q Consensus 342 ~l~v~~a~~~~~ 353 (356)
.|+|.|+.++..
T Consensus 255 ~l~v~~a~~~~~ 266 (284)
T 3smz_A 255 HLRVSFCAPGPP 266 (284)
T ss_dssp ECEEEECCSSSC
T ss_pred EEEEEEecCCCc
Confidence 999999988753
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.4e-34 Score=231.92 Aligned_cols=167 Identities=67% Similarity=1.084 Sum_probs=157.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
++++|||+|||.++++++|+++|+.||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHH
Q psy9313 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184 (356)
Q Consensus 105 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 184 (356)
+........+|||+|||..+++++|+++|++||.|..+.+..+..++ .++|+|||+|.+.++|.+
T Consensus 81 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g---------------~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 81 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTG---------------VSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC---------------CEEEEEEEEESSHHHHHH
T ss_pred CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCC---------------CccceEEEEeCCHHHHHH
Confidence 99888889999999999999999999999999999999998876442 479999999999999999
Q ss_pred HHHHhcCCCcCCCcccEEEEEc
Q psy9313 185 AMQELNGTIPEGASEPITVKFA 206 (356)
Q Consensus 185 a~~~~~~~~~~~~~~~i~v~~~ 206 (356)
|++.++|..+.|+..+|.+.+|
T Consensus 146 A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 146 AIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCccCCCccceEEEeC
Confidence 9999999999998888988875
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9.8e-35 Score=241.81 Aligned_cols=170 Identities=28% Similarity=0.486 Sum_probs=154.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
..++++|||+|||.++|+++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|.+|++.+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccc--ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHH
Q psy9313 103 ARPSSEA--IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHI 180 (356)
Q Consensus 103 ~~~~~~~--~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~ 180 (356)
+.+.... ....+|||+|||..+|+++|+++|+.||.|..+.|+.+... ++|+|||+|.+.+
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-----------------~~g~~fV~f~~~~ 154 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-----------------SKGYGFVHFETQE 154 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-----------------EEEEEEEEESSHH
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-----------------CceEEEEEeCCHH
Confidence 8765433 34568999999999999999999999999999999987533 6899999999999
Q ss_pred HHHHHHHHhcCCCcCCCcccEEEEEccChhh
Q psy9313 181 EAEHAMQELNGTIPEGASEPITVKFANSPAG 211 (356)
Q Consensus 181 ~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~ 211 (356)
+|.+|++.|+|..+.| ++|.|.++..+..
T Consensus 155 ~a~~Ai~~lng~~~~g--~~i~V~~a~~~~~ 183 (213)
T 4f02_A 155 AAERAIEKMNGMLLND--RKVFVGRFKSRKE 183 (213)
T ss_dssp HHHHHHHHHTTCEETT--EECEEEECCCHHH
T ss_pred HHHHHHHHhCCCEECC--EEEEEEEcCCCcc
Confidence 9999999999999999 8999999887543
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.4e-34 Score=232.31 Aligned_cols=167 Identities=47% Similarity=0.872 Sum_probs=157.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
++++|||+|||.++++++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|++.++|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57999999999999999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHH
Q psy9313 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184 (356)
Q Consensus 105 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 184 (356)
+........+|||+|||..+++++|+++|++||.|..+.+..+..++ .++|+|||+|.+.++|.+
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~---------------~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTG---------------RPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTC---------------CEEEEEEEEESSHHHHHH
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCC---------------CcceEEEEEECCHHHHHH
Confidence 98888889999999999999999999999999999999998876442 478999999999999999
Q ss_pred HHHHhcCCCcCCCcccEEEEEc
Q psy9313 185 AMQELNGTIPEGASEPITVKFA 206 (356)
Q Consensus 185 a~~~~~~~~~~~~~~~i~v~~~ 206 (356)
|+..++|..+.|+.++|.|.++
T Consensus 147 A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999888889998875
No 6
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.4e-33 Score=235.92 Aligned_cols=184 Identities=22% Similarity=0.400 Sum_probs=155.9
Q ss_pred ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy9313 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189 (356)
Q Consensus 110 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 189 (356)
...++|||+|||.++|+++|+++|+.||.|.++.++.+..++ .++|+|||+|.+.++|.+|++.+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g---------------~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTM---------------KHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC----------------CCCSEEEEEESSHHHHHHHHHHH
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCC---------------ccCceEEEEeCCHHHHHHHHHHc
Confidence 346789999999999999999999999999999998876443 47999999999999999999999
Q ss_pred cCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCC
Q psy9313 190 NGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHG 269 (356)
Q Consensus 190 ~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (356)
++..+.+ +.|.+.++............ .. .. ..
T Consensus 91 ~~~~~~g--~~l~v~~~~~~~~~~~~~~~--------~~---~~----------------------------------~~ 123 (216)
T 2qfj_A 91 NSVMLGG--RNIKVGRPSNIGQAQPIIDQ--------LA---EE----------------------------------AR 123 (216)
T ss_dssp SSCCCC---CCCEEECCSCCGGGHHHHHH--------HH---HH----------------------------------HT
T ss_pred cCCeeCC--eeEEEecCCCccccchhhhh--------hh---cc----------------------------------cC
Confidence 9999999 77888876654432211100 00 00 01
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|+|+|||..+++++|+++|++||.|..|.++.++.+|.++|+|||+|.+.++|.+|++.|||..|+|+.|+|.|+.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~ 203 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAV 203 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECS
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEec
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy9313 350 HKPLPP 355 (356)
Q Consensus 350 ~~~~~~ 355 (356)
+++.|+
T Consensus 204 ~~~~~~ 209 (216)
T 2qfj_A 204 TPPMPL 209 (216)
T ss_dssp SCSSTT
T ss_pred CCCCCC
Confidence 987543
No 7
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1e-33 Score=235.70 Aligned_cols=171 Identities=30% Similarity=0.473 Sum_probs=148.6
Q ss_pred ccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy9313 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187 (356)
Q Consensus 108 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 187 (356)
...+.++|||+|||.++|+++|+++|++||+|.+|.|+.+..++ .++|+|||+|.+.++|++|+.
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg---------------~~~G~afV~F~~~~~A~~Ai~ 75 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITR---------------RSLGYAYVNFQQPADAERALD 75 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC---------------CEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCC---------------CccccccceeCCHHHHHHHHH
Confidence 34457899999999999999999999999999999999887653 579999999999999999999
Q ss_pred HhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCC
Q psy9313 188 ELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSL 267 (356)
Q Consensus 188 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (356)
.+++..+.+ +.+++.++.........
T Consensus 76 ~~~~~~~~g--~~i~~~~~~~~~~~~~~---------------------------------------------------- 101 (213)
T 4f02_A 76 TMNFDVIKG--KPVRIMWSQRDPSLRKS---------------------------------------------------- 101 (213)
T ss_dssp HHTTCEETT--EECEEEECCCCTHHHHH----------------------------------------------------
T ss_pred HhhhhhcCC--ccccccccccccccccc----------------------------------------------------
Confidence 999999999 77888776543321110
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..++|||+|||+.+++++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 102 --~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 102 --GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp --CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred --ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 22479999999999999999999999999999999985 45799999999999999999999999999999999999
Q ss_pred ecCC
Q psy9313 348 KTHK 351 (356)
Q Consensus 348 a~~~ 351 (356)
|+++
T Consensus 178 a~~~ 181 (213)
T 4f02_A 178 FKSR 181 (213)
T ss_dssp CCCH
T ss_pred cCCC
Confidence 9764
No 8
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=223.63 Aligned_cols=165 Identities=30% Similarity=0.445 Sum_probs=149.5
Q ss_pred cceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCC
Q psy9313 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192 (356)
Q Consensus 113 ~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~ 192 (356)
++|||+|||.++|+++|+++|+.||.|.++.+..+..+ .++|+|||+|.+.++|.+|+..+++.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~----------------~~~g~afV~f~~~~~a~~A~~~l~~~ 64 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN----------------KNVNYAFVEYHQSHDANIALQTLNGK 64 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-----------------CCEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCC----------------CCCCEEEEEeCCHHHHHHHHHHcCCC
Confidence 47999999999999999999999999999999988654 57999999999999999999999999
Q ss_pred CcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCCc
Q psy9313 193 IPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGW 272 (356)
Q Consensus 193 ~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (356)
.+.+ +.+.+.++..... ....+.+
T Consensus 65 ~~~g--~~i~v~~~~~~~~------------------------------------------------------~~~~~~~ 88 (166)
T 3md3_A 65 QIEN--NIVKINWAFQSQQ------------------------------------------------------SSSDDTF 88 (166)
T ss_dssp EETT--EECEEEECCCCCC------------------------------------------------------CCCTTCE
T ss_pred ccCC--CeeEEEEcCCCCC------------------------------------------------------CCCCCCc
Confidence 9998 8888887654210 1122566
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+|+|+|||..+++++|+++|++||.|.++.++.++.+|.++|+|||+|.+.++|.+|++.|||..++|+.|+|.||+
T Consensus 89 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 89 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred eEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999986
No 9
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1.2e-32 Score=221.01 Aligned_cols=165 Identities=30% Similarity=0.453 Sum_probs=149.5
Q ss_pred cccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
..++|||+|||.++++++|+++|+.||.|.++.+..+..++ .++|+|||+|.+.++|++|+..++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~---------------~~~g~afV~f~~~~~A~~a~~~l~ 66 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTG---------------YSYGYAFVDFTSEMDSQRAIKVLN 66 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTT---------------EECSEEEEEESSHHHHHHHHHHHT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCC---------------ccceEEEEEECCHHHHHHHHHhcC
Confidence 36789999999999999999999999999999998876443 478999999999999999999999
Q ss_pred CCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCC
Q psy9313 191 GTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGS 270 (356)
Q Consensus 191 ~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (356)
+..+.+ +++.+.++..... ...
T Consensus 67 ~~~~~g--~~l~v~~~~~~~~--------------------------------------------------------~~~ 88 (168)
T 1b7f_A 67 GITVRN--KRLKVSYARPGGE--------------------------------------------------------SIK 88 (168)
T ss_dssp TCEETT--EECEEEECCCCSS--------------------------------------------------------TTT
T ss_pred CCEeCC--cEEEEEecCCCcc--------------------------------------------------------cCC
Confidence 999998 8888888754321 114
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC--eeEEEEEe
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD--RLLQVSFK 348 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g--r~l~v~~a 348 (356)
.++|+|+|||..+++++|+++|++||.|..+.+++++.+|.++|+|||+|.+.++|.+|++.|||..+.| +.|+|.||
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 4689999999999999999999999999999999999899999999999999999999999999999988 99999996
No 10
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=220.74 Aligned_cols=163 Identities=28% Similarity=0.529 Sum_probs=149.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS 106 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 106 (356)
++|||+|||.++++++|+++|++||.|.+|.++.++ ++.++|||||+|.+.++|.+|+..++|..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999986 4789999999999999999999999999999999999999765
Q ss_pred c--ccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHH
Q psy9313 107 S--EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184 (356)
Q Consensus 107 ~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 184 (356)
. ......+|||+|||..+|+++|+++|++||.|..+.+..+..++ .++|+|||+|.+.++|.+
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~---------------~~~g~afV~f~~~~~A~~ 144 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTG---------------SSRGYGFVSFTSQDDAQN 144 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTC---------------CEEEEEEEEESCHHHHHH
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCC---------------CcceEEEEEeCCHHHHHH
Confidence 4 34456789999999999999999999999999999999885543 579999999999999999
Q ss_pred HHHHhcCCCcCCCcccEEEEEcc
Q psy9313 185 AMQELNGTIPEGASEPITVKFAN 207 (356)
Q Consensus 185 a~~~~~~~~~~~~~~~i~v~~~~ 207 (356)
|+..++|..+.| ++|.+.++.
T Consensus 145 A~~~l~g~~~~g--~~i~v~~a~ 165 (166)
T 3md3_A 145 AMDSMQGQDLNG--RPLRINWAA 165 (166)
T ss_dssp HHHHHTTCEETT--EECEEEESC
T ss_pred HHHHhCCCccCC--cEEEEEecC
Confidence 999999999998 889998875
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.2e-32 Score=226.78 Aligned_cols=178 Identities=23% Similarity=0.332 Sum_probs=149.5
Q ss_pred cccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHH
Q psy9313 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAM 186 (356)
Q Consensus 107 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~ 186 (356)
......++|||+|||.++|+++|+++|+.||.|.++.++.+..++ .++|||||+|.+.++|.+|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g---------------~~~g~afV~f~~~~~A~~A~ 72 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTK---------------RSRGFGFVTYATVEEVDAAM 72 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC---------------CEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCC---------------CccceEEEEeCCHHHHHHHH
Confidence 345567899999999999999999999999999999999886553 47999999999999999999
Q ss_pred HHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCC
Q psy9313 187 QELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKS 266 (356)
Q Consensus 187 ~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (356)
.. ++..+.| +.+.+.++......... .
T Consensus 73 ~~-~~~~~~g--~~l~v~~~~~~~~~~~~--------------------------------------------------~ 99 (196)
T 1l3k_A 73 NA-RPHKVDG--RVVEPKRAVSREDSQRP--------------------------------------------------G 99 (196)
T ss_dssp HT-CSCEETT--EECEEEECCC----------------------------------------------------------
T ss_pred hc-CCCEECC--EEeeeecccCccccccc--------------------------------------------------c
Confidence 85 8888888 78888887653211100 0
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 267 LHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 267 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
.....++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~ 178 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVR 178 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 011446899999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred EecCCCC
Q psy9313 347 FKTHKPL 353 (356)
Q Consensus 347 ~a~~~~~ 353 (356)
||.++..
T Consensus 179 ~a~~k~~ 185 (196)
T 1l3k_A 179 KALSKQE 185 (196)
T ss_dssp ECC----
T ss_pred ecCChhH
Confidence 9988753
No 12
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.1e-32 Score=226.90 Aligned_cols=174 Identities=23% Similarity=0.408 Sum_probs=150.4
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
+..+.++++|||+|||.++|+++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|+. +++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~ 85 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVE 85 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEee
Confidence 3456678999999999999999999999999999999999999899999999999999999999994 599999999999
Q ss_pred EEecCCCccc------ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEE
Q psy9313 100 VSYARPSSEA------IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173 (356)
Q Consensus 100 v~~~~~~~~~------~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~af 173 (356)
|.++.+.... ...++|||+|||.++|+++|+++|+.||.|..+.++.+..++ .++|+||
T Consensus 86 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------------~~~g~af 150 (196)
T 1l3k_A 86 PKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSG---------------KKRGFAF 150 (196)
T ss_dssp EEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTC---------------CEEEEEE
T ss_pred eecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCC---------------CccceEE
Confidence 9998765432 234789999999999999999999999999999999886443 5799999
Q ss_pred EEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChhhh
Q psy9313 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212 (356)
Q Consensus 174 V~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~ 212 (356)
|+|.+.++|.+|+.. ++..+.| +.|.|.++.++...
T Consensus 151 V~F~~~~~A~~A~~~-~~~~~~G--~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 151 VTFDDHDSVDKIVIQ-KYHTVNG--HNCEVRKALSKQEM 186 (196)
T ss_dssp EEESSHHHHHHHHHC-SCCEETT--EECEEEECC-----
T ss_pred EEECCHHHHHHHHHh-CCcEECC--EEEEEEecCChhHh
Confidence 999999999999986 7889999 88999988765543
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.9e-32 Score=219.50 Aligned_cols=164 Identities=30% Similarity=0.464 Sum_probs=148.1
Q ss_pred ccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy9313 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191 (356)
Q Consensus 112 ~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 191 (356)
.++|||+|||.++++++|+++|+.||.|.++.++.+..++ .++|+|||+|.+.++|++|+..+++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~---------------~~~g~afV~f~~~~~A~~a~~~l~~ 66 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITG---------------QSLGYGFVNYIDPKDAEKAINTLNG 66 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC---------------CEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCC---------------cceeEEEEEECCHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999999886443 5789999999999999999999999
Q ss_pred CCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCCC
Q psy9313 192 TIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSG 271 (356)
Q Consensus 192 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (356)
..+.+ +++.+.++.+.... ...
T Consensus 67 ~~~~g--~~l~v~~~~~~~~~--------------------------------------------------------~~~ 88 (167)
T 1fxl_A 67 LRLQT--KTIKVSYARPSSAS--------------------------------------------------------IRD 88 (167)
T ss_dssp CEETT--EECEEEECCCCCGG--------------------------------------------------------GTT
T ss_pred CccCC--ceEEEEecCCCccc--------------------------------------------------------CCC
Confidence 99998 88888877543211 134
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCee--EEEEEe
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRL--LQVSFK 348 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~--l~v~~a 348 (356)
++|+|+|||..+++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|.+|++.|||..+.|+. |+|.||
T Consensus 89 ~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 89 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 57999999999999999999999999999999999989999999999999999999999999999999975 999886
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.5e-33 Score=225.99 Aligned_cols=166 Identities=23% Similarity=0.429 Sum_probs=153.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
+++++|||+|||.++|+++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|+. ++..+.|+.|.+.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 468999999999999999999999999999999999998899999999999999999999996 578899999999999
Q ss_pred CCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHH
Q psy9313 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAE 183 (356)
Q Consensus 104 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~ 183 (356)
.+........+|||+|||.++++++|+++|++||.|.++.+..+..++ .++|+|||+|.+.++|.
T Consensus 79 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g---------------~~~g~afV~f~~~~~a~ 143 (167)
T 2cjk_A 79 IPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTG---------------QSRGFGFVTYDSADAVD 143 (167)
T ss_dssp CCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSS---------------TTSEEEEEEESSHHHHH
T ss_pred cchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCC---------------ccceEEEEEECCHHHHH
Confidence 988888888999999999999999999999999999999998886443 57999999999999999
Q ss_pred HHHHHhcCCCcCCCcccEEEEEccCh
Q psy9313 184 HAMQELNGTIPEGASEPITVKFANSP 209 (356)
Q Consensus 184 ~a~~~~~~~~~~~~~~~i~v~~~~~~ 209 (356)
+|++ +++..+.| ++|.|.++.++
T Consensus 144 ~A~~-~~~~~~~g--~~i~V~~a~pk 166 (167)
T 2cjk_A 144 RVCQ-NKFIDFKD--RKIEIKRAEPR 166 (167)
T ss_dssp HHHH-CSEECSSS--SCEEEEECCCC
T ss_pred HHHh-CCCEEeCC--eEEEEeecCCC
Confidence 9998 89999999 88999988653
No 15
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.7e-33 Score=234.20 Aligned_cols=171 Identities=22% Similarity=0.390 Sum_probs=153.2
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
...++++|||+|||.++++++|+++|+.||.|.+|.++++..+|.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 45567899999999999999999999999999999999998889999999999999999999999899999999999999
Q ss_pred ecCCCcc-----------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCccc
Q psy9313 102 YARPSSE-----------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170 (356)
Q Consensus 102 ~~~~~~~-----------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g 170 (356)
++..... .....+|||+|||.++|+++|+++|+.||.|..+.+..+..++ .++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g---------------~~~g 168 (216)
T 2qfj_A 104 RPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTG---------------KHKG 168 (216)
T ss_dssp CCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTC---------------CEEE
T ss_pred cCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCC---------------CcCc
Confidence 9876542 2345789999999999999999999999999999999886543 4799
Q ss_pred EEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccCh
Q psy9313 171 IGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209 (356)
Q Consensus 171 ~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~ 209 (356)
+|||+|.+.++|.+|+..+++..+.| +.|.|.++..+
T Consensus 169 ~afV~F~~~~~A~~A~~~l~g~~~~g--~~i~V~~a~~~ 205 (216)
T 2qfj_A 169 YGFIEYEKAQSSQDAVSSMNLFDLGG--QYLRVGKAVTP 205 (216)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCBCSS--SBCEEEECSSC
T ss_pred eEEEEecCHHHHHHHHHHccCCEeCC--cEEEEEEecCC
Confidence 99999999999999999999999999 88999988765
No 16
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2.7e-32 Score=220.38 Aligned_cols=167 Identities=29% Similarity=0.517 Sum_probs=149.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCC--ccceEEEEEecCHHHHHHHHHHhCCceeC---CeEEE
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA--QSLGYGFVNYYRTEDAERAIIELNGLKLQ---NKSIK 99 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~g~~~~---g~~l~ 99 (356)
++++|||+|||.++++++|+++|++||.|.+|.+++++.++ .++|||||+|.+.++|.+|++.|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998776 89999999999999999999999998875 67888
Q ss_pred EEecCCCcc-cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCC
Q psy9313 100 VSYARPSSE-AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQ 178 (356)
Q Consensus 100 v~~~~~~~~-~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 178 (356)
+.++.+... ....++|||+|||.++|+++|+++|++||.|..+.++.+..+ .++|+|||+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g----------------~~~g~afV~f~~ 145 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDG----------------LSRGCAFVTFTT 145 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTS----------------CEEEEEEEEESS
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCC----------------CEEEEEEEEECC
Confidence 888875543 346789999999999999999999999999999999888543 579999999999
Q ss_pred HHHHHHHHHHhcCCCcC-CCcccEEEEEcc
Q psy9313 179 HIEAEHAMQELNGTIPE-GASEPITVKFAN 207 (356)
Q Consensus 179 ~~~a~~a~~~~~~~~~~-~~~~~i~v~~~~ 207 (356)
.++|.+|++.++|..+. |+.++|.|.++.
T Consensus 146 ~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 146 RAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 99999999999997665 446899998863
No 17
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1.1e-32 Score=220.91 Aligned_cols=166 Identities=22% Similarity=0.400 Sum_probs=146.4
Q ss_pred cccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
+.++|||+|||.++|+++|+++|+.||.|.++.++.+..++ .++|+|||+|.+.++|++|+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g---------------~~~g~afV~f~~~~~a~~A~~~-- 64 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATG---------------RSRGFGFLSFEKPSSVDEVVKT-- 64 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTS---------------SCCSCEEEEESSTHHHHHHHHS--
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCC---------------CccceEEEEEccHHHHHHHHhc--
Confidence 46789999999999999999999999999999999886543 5899999999999999999984
Q ss_pred CCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCCC
Q psy9313 191 GTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGS 270 (356)
Q Consensus 191 ~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (356)
+..+.| +.+.+.++....... +
T Consensus 65 ~~~~~g--~~i~v~~~~~~~~~~--------------------------------------------------------~ 86 (167)
T 2cjk_A 65 QHILDG--KVIDPKRAIPRDEQD--------------------------------------------------------K 86 (167)
T ss_dssp CCEETT--EECCCEECCCHHHHH--------------------------------------------------------H
T ss_pred ccccCC--eEcccccccchhhcc--------------------------------------------------------C
Confidence 566777 667777665432110 2
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
.++|+|+|||+.+++++|+++|++||.|.++.++.++.+|.++|+|||+|.+.++|.+|++ ++|..++|+.|.|.||.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 3479999999999999999999999999999999999899999999999999999999998 899999999999999988
Q ss_pred CC
Q psy9313 351 KP 352 (356)
Q Consensus 351 ~~ 352 (356)
+.
T Consensus 166 k~ 167 (167)
T 2cjk_A 166 RH 167 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 18
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.9e-31 Score=215.36 Aligned_cols=170 Identities=25% Similarity=0.414 Sum_probs=145.8
Q ss_pred cccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
..++|||+|||.++|+++|+++|++||+|.++.++.+..++ .+.++|+|||+|.+.++|++|++.++
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~-------------~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQN-------------PPQSKGCCFVTFYTRKAALEAQNALH 68 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSS-------------SCEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCC-------------CCCcceEEEEEECCHHHHHHHHHHhc
Confidence 36789999999999999999999999999999999887553 01378999999999999999999999
Q ss_pred CCCcC-CCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCC
Q psy9313 191 GTIPE-GASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHG 269 (356)
Q Consensus 191 ~~~~~-~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (356)
+..+. +..+.+.+..+...... ..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------~~ 93 (175)
T 3nmr_A 69 NMKVLPGMHHPIQMKPADSEKNN-------------------------------------------------------AV 93 (175)
T ss_dssp TTCCCTTCSSCCEEEECGGGCCS-------------------------------------------------------CG
T ss_pred CcEEccCCccceEEccccccccc-------------------------------------------------------cC
Confidence 97654 54577888765432110 11
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC---CeeEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG---DRLLQVS 346 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~---gr~l~v~ 346 (356)
..++|+|+|||+.+|+++|+++|++||.|.++.+++++ +|.++|+|||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 34579999999999999999999999999999999996 4899999999999999999999999998776 4999999
Q ss_pred Eec
Q psy9313 347 FKT 349 (356)
Q Consensus 347 ~a~ 349 (356)
||.
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 973
No 19
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=4.3e-31 Score=212.68 Aligned_cols=160 Identities=20% Similarity=0.425 Sum_probs=144.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc----C-------CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCce
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSV----G-------EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLK 92 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~----g-------~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 92 (356)
+++++|||+|||.++|+++|+++|++| | .|.++.+. .++|||||+|.+.++|.+|+ .++|..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 468999999999999999999999999 6 56666553 34689999999999999999 899999
Q ss_pred eCCeEEEEEecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEE
Q psy9313 93 LQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172 (356)
Q Consensus 93 ~~g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~a 172 (356)
+.|+.|.|.++.+........+|||+|||..+|+++|+++|++||.|..+.+..+..++ .++|+|
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g---------------~~~g~a 139 (172)
T 2g4b_A 75 FQGQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG---------------LSKGYA 139 (172)
T ss_dssp ETTEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTC---------------SEEEEE
T ss_pred ecCceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCC---------------CcceEE
Confidence 99999999999888777778999999999999999999999999999999999886442 579999
Q ss_pred EEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEcc
Q psy9313 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207 (356)
Q Consensus 173 fV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~ 207 (356)
||+|.+.++|.+|+..++|..+.| +.|.|.++.
T Consensus 140 fV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~As 172 (172)
T 2g4b_A 140 FCEYVDINVTDQAIAGLNGMQLGD--KKLLVQRAS 172 (172)
T ss_dssp EEEESSTTHHHHHHHHHTTCEETT--EECEEEECC
T ss_pred EEEeCCHHHHHHHHHHcCCCEECC--eEEEEEeCC
Confidence 999999999999999999999999 888888763
No 20
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.2e-30 Score=215.12 Aligned_cols=184 Identities=23% Similarity=0.363 Sum_probs=148.9
Q ss_pred cccceEEcCCCCCCCHHHHHHhhccc----C-------CeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCH
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPY----G-------TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQH 179 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 179 (356)
..++|||+|||.++|+++|+++|+.| | .|.++.+. .++|+|||+|.+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---------------------~~~g~afV~F~~~ 61 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---------------------QDKNFAFLEFRSV 61 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---------------------TTTTEEEEEESCS
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---------------------CCCCEEEEEeCCH
Confidence 46889999999999999999999999 5 56665553 3589999999999
Q ss_pred HHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccC
Q psy9313 180 IEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259 (356)
Q Consensus 180 ~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (356)
++|++|+ .+++..+.| +++.+.++......... .. . + ....
T Consensus 62 ~~A~~Al-~l~g~~~~g--~~i~v~~~~~~~~~~~~-----------------------~~----~-----~----~~~~ 102 (198)
T 2yh0_A 62 DETTQAM-AFDGIIFQG--QSLKIRRPHDYQPLPGM-----------------------SE----N-----P----SVYV 102 (198)
T ss_dssp HHHHHHG-GGTTEEETT--EEEEEECCCCCCCCCCS-----------------------SS----C-----S----SCCC
T ss_pred HHHHHHH-HhcCCEEcC--ceEEEeCCCCCCCCCCC-----------------------cC----C-----C----cCCC
Confidence 9999999 799999999 88888876543211000 00 0 0 0000
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC
Q psy9313 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG 339 (356)
Q Consensus 260 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 339 (356)
..........+.++|+|+|||+.+++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|.+|++.|||..|+
T Consensus 103 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 182 (198)
T 2yh0_A 103 PGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 182 (198)
T ss_dssp TTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET
T ss_pred CCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 00111122346789999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CeeEEEEEecCCCCC
Q psy9313 340 DRLLQVSFKTHKPLP 354 (356)
Q Consensus 340 gr~l~v~~a~~~~~~ 354 (356)
|+.|.|.||+++..+
T Consensus 183 g~~l~v~~a~~~~~~ 197 (198)
T 2yh0_A 183 DKKLLVQRASVGAKN 197 (198)
T ss_dssp TEECEEEESCCCCCC
T ss_pred CEEEEEEECCCCCCC
Confidence 999999999987643
No 21
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.9e-30 Score=226.03 Aligned_cols=174 Identities=24% Similarity=0.391 Sum_probs=158.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
....++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~ 171 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHW 171 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 44678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCcc---cccccceEEcCCCCCC-CHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCC
Q psy9313 103 ARPSSE---AIKRANLYVSGLPKHM-TQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQ 178 (356)
Q Consensus 103 ~~~~~~---~~~~~~l~v~nl~~~~-t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 178 (356)
+.+... .....+|||+|||..+ |+++|+++|+.||.|..+.+..+..+ .++|+|||+|.+
T Consensus 172 a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g----------------~~~g~afV~f~~ 235 (284)
T 3smz_A 172 TDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDG----------------QLKGFAVLEYET 235 (284)
T ss_dssp CCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSC----------------CEEEEEEEECSS
T ss_pred CCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCC----------------CcccEEEEEeCC
Confidence 987653 3456789999999995 99999999999999999999887633 579999999999
Q ss_pred HHHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhH
Q psy9313 179 HIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAK 214 (356)
Q Consensus 179 ~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 214 (356)
.++|.+|+..++|..+.| ++|.+.++.+......
T Consensus 236 ~~~A~~A~~~l~g~~~~g--~~l~v~~a~~~~~~~~ 269 (284)
T 3smz_A 236 AEMAEEAQQQADGLSLGG--SHLRVSFCAPGPPGRS 269 (284)
T ss_dssp HHHHHHHHHHHTTCEETT--EECEEEECCSSSCHHH
T ss_pred HHHHHHHHHHhCCCccCC--eEEEEEEecCCCcccc
Confidence 999999999999999988 8999999987665433
No 22
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=4.4e-31 Score=212.64 Aligned_cols=159 Identities=25% Similarity=0.428 Sum_probs=141.5
Q ss_pred cccceEEcCCCCCCCHHHHHHhhccc----C-------CeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCH
Q psy9313 111 KRANLYVSGLPKHMTQEDLENLFRPY----G-------TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQH 179 (356)
Q Consensus 111 ~~~~l~v~nl~~~~t~~~l~~~f~~~----g-------~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~ 179 (356)
..++|||+|||.++|+++|+++|++| | .|.++.+.. ++|+|||+|.+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---------------------~~g~afV~f~~~ 61 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---------------------DKNFAFLEFRSV 61 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---------------------TTTEEEEEESSH
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---------------------CCCEEEEEeCCH
Confidence 46889999999999999999999999 6 677776643 489999999999
Q ss_pred HHHHHHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccC
Q psy9313 180 IEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNN 259 (356)
Q Consensus 180 ~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (356)
++|++|+ .+++..+.| +++.+.++.....
T Consensus 62 ~~A~~A~-~~~~~~~~g--~~i~v~~~~~~~~------------------------------------------------ 90 (172)
T 2g4b_A 62 DETTQAM-AFDGIIFQG--QSLKIRRPHDYQP------------------------------------------------ 90 (172)
T ss_dssp HHHHHHG-GGTTCEETT--EECEEECCSSCCC------------------------------------------------
T ss_pred HHHHHHH-HhCCcEecC--ceeeecCCcccCC------------------------------------------------
Confidence 9999999 799999998 7888876543210
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC
Q psy9313 260 SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG 339 (356)
Q Consensus 260 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 339 (356)
....++|+|+|||+.+++++|+++|++||.|.++.++.++.+|.++|+|||+|.+.++|.+|++.|||..++
T Consensus 91 --------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 162 (172)
T 2g4b_A 91 --------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG 162 (172)
T ss_dssp --------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET
T ss_pred --------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC
Confidence 012457999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred CeeEEEEEec
Q psy9313 340 DRLLQVSFKT 349 (356)
Q Consensus 340 gr~l~v~~a~ 349 (356)
|+.|.|.||.
T Consensus 163 g~~l~V~~As 172 (172)
T 2g4b_A 163 DKKLLVQRAS 172 (172)
T ss_dssp TEECEEEECC
T ss_pred CeEEEEEeCC
Confidence 9999999984
No 23
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=1.4e-30 Score=214.34 Aligned_cols=161 Identities=19% Similarity=0.272 Sum_probs=138.8
Q ss_pred CCCceEEEcCCC-CCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 24 EQNSNLIVNYVP-QTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 24 ~~~~~l~v~nlp-~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
.++++|||+||| ..+++++|+++|++||.|.+|++++++ +|||||+|.+.++|..|++.|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 468999999999 899999999999999999999998653 58999999999999999999999999999999999
Q ss_pred cCCCcc-------------------------------------cccccceEEcCCCCCCCHHHHHHhhcccCCe--EEEE
Q psy9313 103 ARPSSE-------------------------------------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI--ITSR 143 (356)
Q Consensus 103 ~~~~~~-------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i--~~v~ 143 (356)
++.... ..+..+|||+|||+++|+++|+++|++||.| .++.
T Consensus 77 s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~ 156 (205)
T 3tyt_A 77 SKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVK 156 (205)
T ss_dssp CSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEE
T ss_pred ccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 863210 0123469999999999999999999999999 8898
Q ss_pred EecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCc--ccEEEEEc
Q psy9313 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS--EPITVKFA 206 (356)
Q Consensus 144 i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~--~~i~v~~~ 206 (356)
+..+. + ..+|+|||+|.+.++|.+|+..|+|..+.+.. .++.++++
T Consensus 157 ~~~~~-~----------------~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 157 VFSGK-S----------------ERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp ECSCC-S----------------SSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EEcCC-C----------------CCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 88764 2 24699999999999999999999999887653 46666553
No 24
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=4.2e-31 Score=213.39 Aligned_cols=165 Identities=22% Similarity=0.367 Sum_probs=144.7
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
..+.++++|||+|||.++++++|+++|..||.+.. .++.+..+|.++|||||+|.+.++|.+|+ .|+|..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEE
Confidence 45778999999999999999999999999998776 33445557889999999999999999999 69999999999999
Q ss_pred EecCCCc--ccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCC
Q psy9313 101 SYARPSS--EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQ 178 (356)
Q Consensus 101 ~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 178 (356)
.++.+.. .....++|||+|||..+|+++|+++|++||.|..+ .. ++.++|+|||+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~----------------~~~~~g~afV~f~~ 145 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQ----------------DGKSKGIAYIEFKS 145 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CS----------------SSSCCSEEEEECSS
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cC----------------CCCCceEEEEEECC
Confidence 9998643 34567899999999999999999999999988766 21 12579999999999
Q ss_pred HHHHHHHHHHhcCCCcCCCcccEEEEEccCh
Q psy9313 179 HIEAEHAMQELNGTIPEGASEPITVKFANSP 209 (356)
Q Consensus 179 ~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~ 209 (356)
.++|.+|+..++|..+.| +.|.+.++.++
T Consensus 146 ~~~A~~A~~~l~g~~~~g--~~i~v~~a~~k 174 (175)
T 1fje_B 146 EADAEKNLEEKQGAEIDG--RSVSLYYTGEK 174 (175)
T ss_dssp HHHHHHHHHHHTEEEETT--EEEEEEECSSC
T ss_pred HHHHHHHHHHhCCCEECC--eEEEEEecCCC
Confidence 999999999999999999 88999988653
No 25
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=2.5e-31 Score=219.10 Aligned_cols=163 Identities=20% Similarity=0.403 Sum_probs=141.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccC-----------CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCce
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVG-----------EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLK 92 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g-----------~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 92 (356)
+.+++|||+|||.++++++|+++|++|| .|.++.+ +.++|||||+|.+.++|.+|+ .|+|..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 4689999999999999999999999995 4444443 456789999999999999999 899999
Q ss_pred eCCeEEEEEecCCCcc--------------------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEeccccccc
Q psy9313 93 LQNKSIKVSYARPSSE--------------------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASE 152 (356)
Q Consensus 93 ~~g~~l~v~~~~~~~~--------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~ 152 (356)
|.|+.|.|.++.+... ....++|||+|||..+++++|+++|++||.|..+.+..+..++
T Consensus 75 ~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~- 153 (198)
T 2yh0_A 75 FQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATG- 153 (198)
T ss_dssp ETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTC-
T ss_pred EcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCC-
Confidence 9999999999865421 1345789999999999999999999999999999999886442
Q ss_pred ccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEccChh
Q psy9313 153 NVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPA 210 (356)
Q Consensus 153 ~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~~ 210 (356)
.++|+|||+|.+.++|.+|+..++|..+.| +.|.+.++.++.
T Consensus 154 --------------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~~~~ 195 (198)
T 2yh0_A 154 --------------LSKGYAFCEYVDINVTDQAIAGLNGMQLGD--KKLLVQRASVGA 195 (198)
T ss_dssp --------------SEEEEEEEEESSSSHHHHHHHHHTTCEETT--EECEEEESCCCC
T ss_pred --------------CcceEEEEEECCHHHHHHHHHHcCCCEECC--EEEEEEECCCCC
Confidence 479999999999999999999999999998 889999887643
No 26
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=5.1e-30 Score=215.72 Aligned_cols=162 Identities=24% Similarity=0.362 Sum_probs=144.8
Q ss_pred CcCCCCceEEEcCCCC-CCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 21 DVNEQNSNLIVNYVPQ-TMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~-~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
....++++|||+|||. ++++++|+++|++||.|.+|.+++++ +|||||+|.+.++|.+|++.|+|..+.|+.|.
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 4456789999999999 99999999999999999999998875 67999999999999999999999999999999
Q ss_pred EEecCCCcc-----------------------------------cccccceEEcCCCCCCCHHHHHHhhcccC-CeEEEE
Q psy9313 100 VSYARPSSE-----------------------------------AIKRANLYVSGLPKHMTQEDLENLFRPYG-TIITSR 143 (356)
Q Consensus 100 v~~~~~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~v~ 143 (356)
|.++.+... .....+|||+|||..+++++|+++|+.|| .|..+.
T Consensus 104 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~ 183 (229)
T 2adc_A 104 ITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFK 183 (229)
T ss_dssp EECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEE
T ss_pred EEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEE
Confidence 999875410 12257799999999999999999999999 999999
Q ss_pred EecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcC-CCcccEEEEEccCh
Q psy9313 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPE-GASEPITVKFANSP 209 (356)
Q Consensus 144 i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~-~~~~~i~v~~~~~~ 209 (356)
+... .+|+|||+|.+.++|.+|+..++|..+. | +.|.+.++.++
T Consensus 184 i~~~--------------------~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g--~~l~v~~a~~~ 228 (229)
T 2adc_A 184 FFQK--------------------DRKMALIQMGSVEEAVQALIDLHNHDLGEN--HHLRVSFSKST 228 (229)
T ss_dssp ECSS--------------------STTCEEEEESSHHHHHHHHHHHTTCBSSSS--CBCEEEECSSC
T ss_pred EEEC--------------------CCcEEEEEECCHHHHHHHHHHHCCCccCCC--CeEEEEEecCC
Confidence 9653 4799999999999999999999999998 7 88999988653
No 27
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=7.3e-30 Score=222.03 Aligned_cols=162 Identities=22% Similarity=0.424 Sum_probs=145.4
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHH----HHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQ----HLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~----~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
....++++|||+|||.++++++|+ ++|+.||.|.+|.+++ ++.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 346779999999999999999977 8999999999998875 678999999999999999999999999999999
Q ss_pred EEEEEecCCCcc--------------------------------------------------------------------
Q psy9313 97 SIKVSYARPSSE-------------------------------------------------------------------- 108 (356)
Q Consensus 97 ~l~v~~~~~~~~-------------------------------------------------------------------- 108 (356)
.|+|.|+++...
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 999999865431
Q ss_pred -------------------------------------------cccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEe
Q psy9313 109 -------------------------------------------AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145 (356)
Q Consensus 109 -------------------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~ 145 (356)
....++|||+|||..+|+++|+++|+.||.|.++.+.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 1134679999999999999999999999999999998
Q ss_pred cccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcC-CCcccEEEEEcc
Q psy9313 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPE-GASEPITVKFAN 207 (356)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~-~~~~~i~v~~~~ 207 (356)
.+ .+|+|||+|.+.++|.+|+..|+|..+. | +.|.|.+++
T Consensus 241 ~~--------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~ak 281 (282)
T 3pgw_A 241 PG--------------------RHDIAFVEFDNEVQAGAARDALQGFKITQN--NAMKISFAK 281 (282)
T ss_pred cC--------------------CCcEEEEEeCCHHHHHHHHHHcCCcEeCCC--CEEEEEEec
Confidence 65 3689999999999999999999999998 7 889998875
No 28
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=8.2e-30 Score=214.47 Aligned_cols=199 Identities=24% Similarity=0.360 Sum_probs=149.5
Q ss_pred CCcccccccceEEcCCCC-CCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHH
Q psy9313 105 PSSEAIKRANLYVSGLPK-HMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAE 183 (356)
Q Consensus 105 ~~~~~~~~~~l~v~nl~~-~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~ 183 (356)
|.......++|||+|||. ++++++|+++|+.||.|.++.+..+ .+|+|||+|.+.++|+
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~--------------------~~g~afV~F~~~~~A~ 86 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--------------------KKENALVQMADGNQAQ 86 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT--------------------TSCCEEEEESCHHHHH
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEEC--------------------CCCEEEEEECCHHHHH
Confidence 444556688999999999 9999999999999999999999876 2789999999999999
Q ss_pred HHHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCC
Q psy9313 184 HAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLP 263 (356)
Q Consensus 184 ~a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (356)
+|++.+++..+.| +.|.+.++............... .....+... +. ..........
T Consensus 87 ~Ai~~l~g~~~~g--~~l~v~~a~~~~~~~~~~~~~~~----------~~~~~~~~~----------~~-~~~~~~~~~~ 143 (229)
T 2adc_A 87 LAMSHLNGHKLHG--KPIRITLSKHQNVQLPREGQEDQ----------GLTKDYGNS----------PL-HRFKKPGSKN 143 (229)
T ss_dssp HHHHHHTTCBCSS--SBCEEECCSCCCCCCCCSSSSTT----------TTEEECTTC----------SS-CCCCSTTSGG
T ss_pred HHHHHhCCCeECC--eEEEEEEecCccccCcccccccc----------ccccccccC----------cc-cccCCccccc
Confidence 9999999999999 78888887643211000000000 000000000 00 0000000000
Q ss_pred CCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC-Ce
Q psy9313 264 PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG-DR 341 (356)
Q Consensus 264 ~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-gr 341 (356)
......++++|+|+|||..+++++|+++|++|| .|..+.++.+ .+|+|||+|.+.++|.+|++.|||..+. |+
T Consensus 144 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~ 218 (229)
T 2adc_A 144 FQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENH 218 (229)
T ss_dssp GTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCC
Confidence 112234678999999999999999999999999 9999999664 2789999999999999999999999999 99
Q ss_pred eEEEEEecCC
Q psy9313 342 LLQVSFKTHK 351 (356)
Q Consensus 342 ~l~v~~a~~~ 351 (356)
.|+|.|++++
T Consensus 219 ~l~v~~a~~~ 228 (229)
T 2adc_A 219 HLRVSFSKST 228 (229)
T ss_dssp BCEEEECSSC
T ss_pred eEEEEEecCC
Confidence 9999999865
No 29
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=4.9e-30 Score=211.01 Aligned_cols=194 Identities=16% Similarity=0.252 Sum_probs=143.3
Q ss_pred cccceEEcCCC-CCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy9313 111 KRANLYVSGLP-KHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189 (356)
Q Consensus 111 ~~~~l~v~nl~-~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 189 (356)
.+++|||+||| ..+|+++|+++|++||.|.+++++.+ .+|+|||+|.+.++|++|++.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--------------------~~g~afV~f~~~~~A~~Ai~~l 62 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--------------------KPGAAMVEMADGYAVDRAITHL 62 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--------------------STTCEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 46789999999 89999999999999999999999875 4799999999999999999999
Q ss_pred cCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCC-CCCCCCCC
Q psy9313 190 NGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNS-MLPPKSLH 268 (356)
Q Consensus 190 ~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 268 (356)
+|..+.| ++|.|.++.......... ...+........+........... ........
T Consensus 63 ng~~~~g--~~l~v~~s~~~~~~p~~~--------------------~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 120 (205)
T 3tyt_A 63 NNNFMFG--QKMNVCVSKQPAIMPGQS--------------------YGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQ 120 (205)
T ss_dssp TTCEETT--EECEEEECSCSCCCCCSC--------------------CBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCC
T ss_pred CCCEECC--ceEEEEEccCCccCCCcc--------------------cccccCCccccccCCCccccccCcccccccccC
Confidence 9999999 889998876432100000 000000000000000000000000 00001123
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCce--eEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe----e
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAV--QNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR----L 342 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v--~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr----~ 342 (356)
.++++|||+|||+.+|+++|+++|++||.| .+++++.+. +.++|+|||+|.+.++|.+|+..|||..|.|+ .
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 467899999999999999999999999999 899998774 55679999999999999999999999999986 6
Q ss_pred EEEEEe
Q psy9313 343 LQVSFK 348 (356)
Q Consensus 343 l~v~~a 348 (356)
+.|.||
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777775
No 30
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=8e-31 Score=211.74 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=141.0
Q ss_pred ccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHH
Q psy9313 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187 (356)
Q Consensus 108 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~ 187 (356)
.....++|||+|||.++|+++|+++|+.||.+..+ ++.+..+ +.++|+|||+|.+.++|++|++
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~---------------~~~~g~afV~f~~~~~a~~A~~ 72 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRT---------------GTNRKFGYVDFESAEDLEKALE 72 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEE---------------ETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCC---------------CccccEEEEEECCHHHHHHHHh
Confidence 44567899999999999999999999999987662 2223222 2579999999999999999995
Q ss_pred HhcCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCC
Q psy9313 188 ELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSL 267 (356)
Q Consensus 188 ~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (356)
+++..+.| +++.+.++...... .
T Consensus 73 -l~g~~~~g--~~l~v~~~~~~~~~------------------------------------------------------~ 95 (175)
T 1fje_B 73 -LTGLKVFG--NEIKLEKPKGRDSK------------------------------------------------------K 95 (175)
T ss_dssp -GGGEEETT--EEEEEECCCCSSCS------------------------------------------------------T
T ss_pred -cCCCEeCC--eEEEEecCCCcccc------------------------------------------------------c
Confidence 99999998 88999887653210 0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
....++|+|+|||+.+++++|+++|++||.|..+ ..++.++|+|||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 1145689999999999999999999999988765 45788999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy9313 348 KTHKP 352 (356)
Q Consensus 348 a~~~~ 352 (356)
|.+++
T Consensus 171 a~~k~ 175 (175)
T 1fje_B 171 TGEKG 175 (175)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98875
No 31
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=3.1e-29 Score=218.12 Aligned_cols=216 Identities=19% Similarity=0.319 Sum_probs=148.0
Q ss_pred cccccceEEcCCCCCCCHHHHH----HhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHH
Q psy9313 109 AIKRANLYVSGLPKHMTQEDLE----NLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184 (356)
Q Consensus 109 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 184 (356)
....++|||+|||.++|+++|+ ++|+.||.|.+|.+.... .++|||||+|.+.++|.+
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~------------------~~~g~afV~f~~~~~a~~ 67 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL------------------KMRGQAFVIFKEVSSATN 67 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC------------------CcceEEEEEECCHHHHHH
Confidence 4557899999999999999966 899999999999987631 578999999999999999
Q ss_pred HHHHhcCCCcCCCcccEEEEEccChhhhhHHHhhhhH-------------HHHHHHHHHhhhhcc------cCCCCcc--
Q psy9313 185 AMQELNGTIPEGASEPITVKFANSPAGRAKALAANLN-------------AQAAAMRHFAAAMRH------FGNPLHH-- 243 (356)
Q Consensus 185 a~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~------~~~~~~~-- 243 (356)
|+..++|..+.| +.|.|.++............... .+............. .......
T Consensus 68 A~~~l~g~~~~g--~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (282)
T 3pgw_A 68 ALRSMQGFPFYD--KPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMP 145 (282)
T ss_pred HHHHhcCCeeCC--cEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCC
Confidence 999999999999 78888887654431111000000 000000000000000 0000000
Q ss_pred --ccc------------cccCcccccc--------------------ccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHH
Q psy9313 244 --SAR------------FKFAPLTADL--------------------LNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLW 289 (356)
Q Consensus 244 --~~~------------~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~ 289 (356)
... ....+..... .............++++|||+|||..+++++|+
T Consensus 146 ~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 225 (282)
T 3pgw_A 146 PMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLS 225 (282)
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHH
Confidence 000 0000000000 000000011223367899999999999999999
Q ss_pred HhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC-CeeEEEEEec
Q psy9313 290 QLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG-DRLLQVSFKT 349 (356)
Q Consensus 290 ~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-gr~l~v~~a~ 349 (356)
++|++||.|.+|+++.+. +|+|||+|.+.++|.+|++.|||..|. |+.|+|.||+
T Consensus 226 ~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 226 MLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999999999999999763 589999999999999999999999999 9999999986
No 32
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=9e-30 Score=209.72 Aligned_cols=191 Identities=23% Similarity=0.329 Sum_probs=146.2
Q ss_pred ccceEEcCCCC-CCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhc
Q psy9313 112 RANLYVSGLPK-HMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190 (356)
Q Consensus 112 ~~~l~v~nl~~-~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 190 (356)
+++|||+|||. ++++++|+++|+.||.|.++.+..+ .+|+|||+|.+.++|++|+..++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~--------------------~~g~afV~f~~~~~a~~A~~~l~ 62 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--------------------KKENALVQMADGNQAQLAMSHLN 62 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT--------------------CSSCCEEECTTTHHHHHHHHHHT
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC--------------------CCCEEEEEECCHHHHHHHHHHhC
Confidence 57899999999 9999999999999999999999876 27899999999999999999999
Q ss_pred CCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccc-cccccCCCCCCCCCCC
Q psy9313 191 GTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLT-ADLLNNSMLPPKSLHG 269 (356)
Q Consensus 191 ~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 269 (356)
+..+.| +++.+.++.......... ..... .....+.... ................
T Consensus 63 ~~~~~g--~~l~v~~a~~~~~~~~~~---------------------~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~~ 118 (198)
T 1qm9_A 63 GHKLHG--KPIRITLSKHQNVQLPRE---------------------GQEDQ-GLTKDYGNSPLHRFKKPGSKNFQNIFP 118 (198)
T ss_dssp TCCCSS--CCCEEEECCCCSCCCSSS---------------------SSSSS-SCEEESSCCCTTSSSSCCCCCCSCCCC
T ss_pred CCeecC--eEEEEEEecCCCcCCCCc---------------------CCccc-cccccccCCchhhccCccccccccCCC
Confidence 999998 788888876543111000 00000 0000000000 0000001111112234
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC-CeeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG-DRLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~-gr~l~v~~ 347 (356)
++++|+|+|||..+++++|+++|++|| .|.++.++.+. +|+|||+|.+.++|.+|++.|||..++ |+.|+|.|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 688999999999999999999999999 99999997642 789999999999999999999999999 99999999
Q ss_pred ecCC
Q psy9313 348 KTHK 351 (356)
Q Consensus 348 a~~~ 351 (356)
++++
T Consensus 194 a~~~ 197 (198)
T 1qm9_A 194 SKST 197 (198)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9865
No 33
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1e-29 Score=209.42 Aligned_cols=158 Identities=25% Similarity=0.378 Sum_probs=141.2
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 25 QNSNLIVNYVPQ-TMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 25 ~~~~l~v~nlp~-~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
.+++|||+|||. .+++++|+++|++||.|.+|.++.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 368999999999 99999999999999999999998764 579999999999999999989999999999999998
Q ss_pred CCCcc-----------------------------------cccccceEEcCCCCCCCHHHHHHhhcccC-CeEEEEEecc
Q psy9313 104 RPSSE-----------------------------------AIKRANLYVSGLPKHMTQEDLENLFRPYG-TIITSRILCD 147 (356)
Q Consensus 104 ~~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~g-~i~~v~i~~~ 147 (356)
.+... ..+..+|||+|||..+++++|+++|+.|| .|..+.+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 77 KHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred cCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 74310 12366799999999999999999999999 9999998764
Q ss_pred cccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcC-CCcccEEEEEccCh
Q psy9313 148 KMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPE-GASEPITVKFANSP 209 (356)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~-~~~~~i~v~~~~~~ 209 (356)
.+|+|||+|.+.++|.+|+..++|..+. | ++|.+.++.++
T Consensus 157 --------------------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g--~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --------------------DRKMALIQMGSVEEAVQALIDLHNHDLGEN--HHLRVSFSKST 197 (198)
T ss_dssp --------------------TSSCEEEECSSHHHHHHHHHHHTSSCCSSC--CSCCEEEECCC
T ss_pred --------------------CCcEEEEEeCCHHHHHHHHHHhcCCccCCC--CeEEEEeeccc
Confidence 3799999999999999999999999998 7 78888887653
No 34
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.96 E-value=1.9e-29 Score=220.48 Aligned_cols=167 Identities=19% Similarity=0.355 Sum_probs=144.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
.+++|||+|||..+++++|+++|+.|| .|..|.++.+.. |.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 589999999999999999999999999 999999998864 889999999999999999999889999999999999999
Q ss_pred CCCccc-------ccccceEEcCCCCC-CCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEE
Q psy9313 104 RPSSEA-------IKRANLYVSGLPKH-MTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVR 175 (356)
Q Consensus 104 ~~~~~~-------~~~~~l~v~nl~~~-~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~ 175 (356)
.+.... ....+|||+|||.. +|+++|+++|+.||.|..+.++.+... ++.++|+|||+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~--------------tg~~~g~afV~ 260 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKE--------------HSFNNCCAFMV 260 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC-----------------CCCEEEEEE
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCc--------------CCCCceEEEEE
Confidence 876543 23578999999999 999999999999999999999887540 12579999999
Q ss_pred eCCHHHHHHHHHHhcCCCcCCCcccEEEEEccCh
Q psy9313 176 FNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209 (356)
Q Consensus 176 f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~~~ 209 (356)
|.+.++|.+|+ .++|..+.| +.|.|.++.++
T Consensus 261 F~~~~~A~~A~-~l~g~~~~g--~~i~V~~a~~k 291 (292)
T 2ghp_A 261 FENKDSAERAL-QMNRSLLGN--REISVSLADKK 291 (292)
T ss_dssp ESSHHHHHHHG-GGTTEEETT--EEEEEEECCCC
T ss_pred eCCHHHHHHHH-HhcCCEECC--cEEEEEEecCC
Confidence 99999999999 999999999 88999988753
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=6.8e-29 Score=212.99 Aligned_cols=163 Identities=26% Similarity=0.425 Sum_probs=144.1
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
......++++|||+|||.++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|+..++|..+.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l 88 (261)
T 3sde_A 15 GEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPL 88 (261)
T ss_dssp TCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCcee
Confidence 3445677899999999999999999999999999999998654 5799999999999999999999999999999
Q ss_pred EEEecCCCcccccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCC
Q psy9313 99 KVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQ 178 (356)
Q Consensus 99 ~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~ 178 (356)
.|.++.+ ..+|||+|||..+|+++|+++|+.||.|..+.++.+..+ .++|+|||+|.+
T Consensus 89 ~v~~a~~------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g----------------~~~g~afV~f~~ 146 (261)
T 3sde_A 89 RIRFATH------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG----------------RATGKGFVEFAA 146 (261)
T ss_dssp EEEECCC------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTS----------------CEEEEEEEEESS
T ss_pred Eeeeccc------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCC----------------CcCcEEEEEeCC
Confidence 9999975 678999999999999999999999999999999988533 579999999999
Q ss_pred HHHHHHHHHHhcC-CCc-CCCcccEEEEEccCh
Q psy9313 179 HIEAEHAMQELNG-TIP-EGASEPITVKFANSP 209 (356)
Q Consensus 179 ~~~a~~a~~~~~~-~~~-~~~~~~i~v~~~~~~ 209 (356)
.++|.+|+..+++ ..+ .+..+++.|.++...
T Consensus 147 ~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 147 KPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred HHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 9999999999954 333 233488999887654
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=6.2e-29 Score=213.26 Aligned_cols=156 Identities=33% Similarity=0.478 Sum_probs=141.3
Q ss_pred ccccceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy9313 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189 (356)
Q Consensus 110 ~~~~~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 189 (356)
...++|||+|||.++|+++|+++|+.||.|.++.+.. ++|+|||+|.+.++|.+|+..+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---------------------~kg~afV~f~~~~~A~~A~~~l 78 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---------------------DRGFGFIRLESRTLAEIAKAEL 78 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---------------------TTTEEEEECSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---------------------CCcEEEEEECCHHHHHHHHHHc
Confidence 4567899999999999999999999999999999854 4799999999999999999999
Q ss_pred cCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCccccccccCccccccccCCCCCCCCCCC
Q psy9313 190 NGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHG 269 (356)
Q Consensus 190 ~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (356)
+|..+.| +.+.+.++..
T Consensus 79 ~g~~i~g--~~l~v~~a~~------------------------------------------------------------- 95 (261)
T 3sde_A 79 DGTILKS--RPLRIRFATH------------------------------------------------------------- 95 (261)
T ss_dssp TTCEETT--EECEEEECCC-------------------------------------------------------------
T ss_pred CCcEECC--ceeEeeeccc-------------------------------------------------------------
Confidence 9999998 8888887642
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC-cccC---CeeEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG-YALG---DRLLQV 345 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g-~~l~---gr~l~v 345 (356)
+++|+|+|||+.+|+++|+++|++||.|.+|.++.+ .+|.++|+|||+|.+.++|.+|+..||+ ..+. |+.|.|
T Consensus 96 -~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 96 -GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp -SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred -CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 347999999999999999999999999999999999 5899999999999999999999999954 4444 999999
Q ss_pred EEecCC
Q psy9313 346 SFKTHK 351 (356)
Q Consensus 346 ~~a~~~ 351 (356)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998764
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=7.5e-24 Score=167.56 Aligned_cols=85 Identities=28% Similarity=0.394 Sum_probs=81.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.||+
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy9313 350 HKPLP 354 (356)
Q Consensus 350 ~~~~~ 354 (356)
++.++
T Consensus 149 ~~~~~ 153 (158)
T 2kn4_A 149 YGRPP 153 (158)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87654
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=5.1e-23 Score=153.21 Aligned_cols=103 Identities=29% Similarity=0.519 Sum_probs=75.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
..+++|||+|||.++++++|+++|++||.|.+|.++.+. +.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.++
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a 80 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRF 80 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 457789999999999999999999999999999999985 558999999999999999999999999999999999998
Q ss_pred CCCcc--------cccccceEEcCCCCCCCHHH
Q psy9313 104 RPSSE--------AIKRANLYVSGLPKHMTQED 128 (356)
Q Consensus 104 ~~~~~--------~~~~~~l~v~nl~~~~t~~~ 128 (356)
.+... .....+|||+|||+++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 81 KSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp SCCCC----------------------------
T ss_pred CCccccccccccccCCCCceEeCCCCCCccccc
Confidence 76543 22345799999999999863
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=1.3e-22 Score=146.43 Aligned_cols=81 Identities=30% Similarity=0.479 Sum_probs=78.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.+++|||+|||+.+|+++|+++|++||.|.+|++++++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 5
No 40
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=5.4e-22 Score=143.14 Aligned_cols=84 Identities=71% Similarity=1.046 Sum_probs=79.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
-..+++|||+|||.++|+++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy9313 103 ARPS 106 (356)
Q Consensus 103 ~~~~ 106 (356)
++|.
T Consensus 96 AkPS 99 (99)
T 4fxv_A 96 ARPS 99 (99)
T ss_dssp CCBC
T ss_pred eeCC
Confidence 9873
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=5.3e-22 Score=155.29 Aligned_cols=138 Identities=20% Similarity=0.219 Sum_probs=110.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHh-cCCCcCCCcccEEEEEccChhhhhHHHhhhhHHHHHHHHHHhhhhcccCCCCcccc
Q psy9313 167 ISKGIGFVRFNQHIEAEHAMQEL-NGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNPLHHSA 245 (356)
Q Consensus 167 ~~~g~afV~f~~~~~a~~a~~~~-~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (356)
..+|+++|+|.+.++|++|+..+ ++..+.| ++.+..+.........
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G---~~~~~~a~~~~~~~~~------------------------------ 57 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG---EWTYDDATKTFTVTEG------------------------------ 57 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC---EEEEETTTTEEEEECS------------------------------
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC---ceecccccCccccccc------------------------------
Confidence 46899999999999999999999 8999888 5777655432211000
Q ss_pred ccccCccccccccCCCCCCCCCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHH
Q psy9313 246 RFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDE 325 (356)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~ 325 (356)
..............+.++|||+|||+.+++++|+++|++||.|.+|+++.+ ++|||||+|.+.++
T Consensus 58 ----------~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~ 122 (150)
T 2i2y_A 58 ----------SHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRD 122 (150)
T ss_dssp ----------SSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHH
T ss_pred ----------cccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHH
Confidence 000001111223346789999999999999999999999999999999886 48999999999999
Q ss_pred HHHHHHHhCCcccCCeeEEEEEecCCC
Q psy9313 326 AVFAIQSLNGYALGDRLLQVSFKTHKP 352 (356)
Q Consensus 326 A~~a~~~l~g~~l~gr~l~v~~a~~~~ 352 (356)
|.+|+..|||..|.|+.|+|.|++++.
T Consensus 123 a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 123 AADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 999999999999999999999998764
No 42
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=5.3e-21 Score=140.55 Aligned_cols=82 Identities=16% Similarity=0.217 Sum_probs=79.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||+.+++++|+++|++||.|.+|.|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|+|.+|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CC
Q psy9313 350 HK 351 (356)
Q Consensus 350 ~~ 351 (356)
.+
T Consensus 85 ~~ 86 (110)
T 3s8s_A 85 KG 86 (110)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.85 E-value=7.9e-21 Score=134.24 Aligned_cols=83 Identities=39% Similarity=0.626 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||..+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.||+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
++|
T Consensus 85 ~kp 87 (87)
T 3bs9_A 85 RKP 87 (87)
T ss_dssp ---
T ss_pred CCC
Confidence 875
No 44
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=6.6e-22 Score=140.48 Aligned_cols=82 Identities=13% Similarity=0.299 Sum_probs=76.9
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhC-CcccCCeeEEEEEec
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN-GYALGDRLLQVSFKT 349 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-g~~l~gr~l~v~~a~ 349 (356)
++|||+|||+++|+++|+++|++|| .|.+|++++++.+|.++|||||+|.+.++|.+|++.++ +..++|+.|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 79999999999999999999999999999999999875 567999999999999
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
+++-
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8764
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-21 Score=138.93 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=75.3
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCc--eeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCc----ccCCeeEE
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGA--VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY----ALGDRLLQ 344 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~----~l~gr~l~ 344 (356)
-.||||+|||+.+|+++|+++|++||. |.+|++++|+.+|+++|||||+|.+.++|.+|++.|||. .|+||.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 358999999999999999999999995 679999999999999999999999999999999999996 48999999
Q ss_pred EEEecC
Q psy9313 345 VSFKTH 350 (356)
Q Consensus 345 v~~a~~ 350 (356)
|+||++
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999986
No 46
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=7.1e-21 Score=139.88 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=82.0
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
.+.+.++|||+|||..+++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 2 g~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcc
Q psy9313 102 YARPSSE 108 (356)
Q Consensus 102 ~~~~~~~ 108 (356)
++.....
T Consensus 82 ~a~~~~~ 88 (110)
T 3s8s_A 82 LDIKGQQ 88 (110)
T ss_dssp ECSTTHH
T ss_pred ECCCCcH
Confidence 9976543
No 47
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=2.3e-20 Score=147.40 Aligned_cols=136 Identities=21% Similarity=0.300 Sum_probs=108.1
Q ss_pred eEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE-------ecC------CCcccccccceEEcCCC
Q psy9313 55 SCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS-------YAR------PSSEAIKRANLYVSGLP 121 (356)
Q Consensus 55 ~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~-------~~~------~~~~~~~~~~l~v~nl~ 121 (356)
++.+..+. ..++|||||+|.+.++|.+|+..+++....+..+.+. ... .........+|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 35566654 3689999999999999999998887643322222222 111 11223446789999999
Q ss_pred CCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccE
Q psy9313 122 KHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPI 201 (356)
Q Consensus 122 ~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i 201 (356)
..+|+++|+++|+.||.|..+.++.+..++ .++|||||+|.+.++|++|+..|+|..+.| ++|
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g---------------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l 142 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTK---------------ESRGFAFVRFHDKRDAEDAMDAMDGAVLDG--REL 142 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCT---------------TSCCEEEEEESBHHHHHHHHHHSTTEESSS--SEE
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCC---------------ccceEEEEEECCHHHHHHHHHHhCCCEECC--eEE
Confidence 999999999999999999999999886443 589999999999999999999999999999 889
Q ss_pred EEEEccCh
Q psy9313 202 TVKFANSP 209 (356)
Q Consensus 202 ~v~~~~~~ 209 (356)
.|.++...
T Consensus 143 ~v~~a~~~ 150 (158)
T 2kn4_A 143 RVQMARYG 150 (158)
T ss_dssp EEEEECCS
T ss_pred EEEECCCC
Confidence 99988764
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.6e-20 Score=131.34 Aligned_cols=82 Identities=29% Similarity=0.463 Sum_probs=78.9
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
+++|||+|||+.+++++|+++|++||.|.++.+++++.+|.++|+|||+|.+.++|.+|++.|||..++|+.|+|.||++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q psy9313 351 KP 352 (356)
Q Consensus 351 ~~ 352 (356)
++
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 49
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.84 E-value=1.8e-21 Score=148.87 Aligned_cols=86 Identities=28% Similarity=0.386 Sum_probs=81.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy9313 350 HKPLPP 355 (356)
Q Consensus 350 ~~~~~~ 355 (356)
++..++
T Consensus 126 ~~~~~~ 131 (135)
T 2lea_A 126 YGRPPD 131 (135)
T ss_dssp CCCCCT
T ss_pred CCCCCc
Confidence 877654
No 50
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=138.01 Aligned_cols=86 Identities=27% Similarity=0.461 Sum_probs=82.2
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.++++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.||
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy9313 349 THKPLP 354 (356)
Q Consensus 349 ~~~~~~ 354 (356)
+++++|
T Consensus 101 ~~~~~~ 106 (106)
T 1p27_B 101 FVRGPP 106 (106)
T ss_dssp EESSCC
T ss_pred cCCCCC
Confidence 988754
No 51
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=137.16 Aligned_cols=84 Identities=23% Similarity=0.510 Sum_probs=77.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhC-CceeCCeEEEEEec
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELN-GLKLQNKSIKVSYA 103 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-g~~~~g~~l~v~~~ 103 (356)
+++|||+|||.++||++|+++|++|| .|.+|.+++++.+|.++|||||+|.+.++|.+|++.++ +..+.|+.|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 89999999999999999999999999999999998764 56799999999999
Q ss_pred CCCccc
Q psy9313 104 RPSSEA 109 (356)
Q Consensus 104 ~~~~~~ 109 (356)
.|+...
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 886544
No 52
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=1.9e-21 Score=138.09 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=73.1
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCC--ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFG--AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.+|||+|||+.+++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|.+|++.|||..|+|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3699999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy9313 350 HKPLP 354 (356)
Q Consensus 350 ~~~~~ 354 (356)
+++.+
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 87754
No 53
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.84 E-value=1.6e-20 Score=146.93 Aligned_cols=122 Identities=20% Similarity=0.299 Sum_probs=109.2
Q ss_pred CccceEEEEEecCHHHHHHHHHHh-CCceeCCeEEEEEecCCC----------------cccccccceEEcCCCCCCCHH
Q psy9313 65 AQSLGYGFVNYYRTEDAERAIIEL-NGLKLQNKSIKVSYARPS----------------SEAIKRANLYVSGLPKHMTQE 127 (356)
Q Consensus 65 ~~~~g~afV~f~~~~~A~~a~~~l-~g~~~~g~~l~v~~~~~~----------------~~~~~~~~l~v~nl~~~~t~~ 127 (356)
...+|+++|+|.+.++|.+|+..+ ||..+.| .+.+.++.+. ......++|||+|||+++|++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467899999999999999999999 9999999 9999988652 223456789999999999999
Q ss_pred HHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcCCCcCCCcccEEEEEcc
Q psy9313 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207 (356)
Q Consensus 128 ~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~~~~~~~i~v~~~~ 207 (356)
+|+++|++||.|.++.++.+ ++|||||+|.+.++|.+|+..++|..+.| ++|.|.++.
T Consensus 89 ~l~~~F~~~G~i~~v~i~~~--------------------~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a~ 146 (150)
T 2i2y_A 89 ELERAFGYYGPLRSVWVARN--------------------PPGFAFVEFEDPRDAADAVRELDGRTLCG--CRVRVELSN 146 (150)
T ss_dssp HHHHHHHHHSCEEEEEECSS--------------------SCSEEEEEESSHHHHHHHHHHHSSSCSSS--SCCEEEECC
T ss_pred HHHHHHHhhCCEEEEEEeeC--------------------CCcEEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEcC
Confidence 99999999999999999875 48999999999999999999999999998 889998876
Q ss_pred Ch
Q psy9313 208 SP 209 (356)
Q Consensus 208 ~~ 209 (356)
++
T Consensus 147 ~~ 148 (150)
T 2i2y_A 147 GE 148 (150)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 54
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=4.8e-20 Score=137.39 Aligned_cols=86 Identities=36% Similarity=0.586 Sum_probs=81.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy9313 349 THKPLP 354 (356)
Q Consensus 349 ~~~~~~ 354 (356)
+.++.+
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 987653
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.7e-20 Score=134.12 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=81.7
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
++++..
T Consensus 92 a~~~~~ 97 (103)
T 2cq0_A 92 AKPSTN 97 (103)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 998764
No 56
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.83 E-value=1.6e-20 Score=135.14 Aligned_cols=84 Identities=25% Similarity=0.561 Sum_probs=80.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|||..++|+.|+|.||+
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 8764
No 57
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.9e-20 Score=132.92 Aligned_cols=84 Identities=27% Similarity=0.533 Sum_probs=80.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
++++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8764
No 58
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=134.10 Aligned_cols=85 Identities=29% Similarity=0.367 Sum_probs=81.2
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 36779999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 98764
No 59
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=132.51 Aligned_cols=83 Identities=30% Similarity=0.503 Sum_probs=79.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..++++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|+|||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy9313 348 KTH 350 (356)
Q Consensus 348 a~~ 350 (356)
|++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 975
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.1e-19 Score=131.86 Aligned_cols=84 Identities=19% Similarity=0.338 Sum_probs=79.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 356789999999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
++++.
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 98764
No 61
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.6e-20 Score=132.42 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=79.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++ |||..|.|+.|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 366799999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
.++..
T Consensus 87 ~~~~~ 91 (99)
T 2dgs_A 87 EPRDS 91 (99)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 98764
No 62
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.9e-20 Score=130.65 Aligned_cols=80 Identities=31% Similarity=0.491 Sum_probs=77.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|+|||+|.+.++|.+|++.|||..+.|+.|+|.||+
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999985
No 63
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.83 E-value=7.4e-20 Score=132.43 Aligned_cols=82 Identities=26% Similarity=0.337 Sum_probs=78.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeE--------EEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQN--------VKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG 339 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 339 (356)
+.+.++|||+|||+.+++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|.+|++.|||..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 346789999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CeeEEEEEec
Q psy9313 340 DRLLQVSFKT 349 (356)
Q Consensus 340 gr~l~v~~a~ 349 (356)
|+.|+|.||+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 64
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9e-20 Score=131.05 Aligned_cols=90 Identities=26% Similarity=0.387 Sum_probs=83.7
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+......+.++++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+..|+|..+.|
T Consensus 5 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 5 SSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34455667789999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred eEEEEEecCC
Q psy9313 96 KSIKVSYARP 105 (356)
Q Consensus 96 ~~l~v~~~~~ 105 (356)
+.|+|.++++
T Consensus 85 ~~l~v~~a~~ 94 (95)
T 2cqc_A 85 RRIRVSGPSS 94 (95)
T ss_dssp EEEEEECCSC
T ss_pred EEEEEEecCC
Confidence 9999999874
No 65
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=5.7e-20 Score=131.77 Aligned_cols=81 Identities=27% Similarity=0.437 Sum_probs=77.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c
Q psy9313 349 T 349 (356)
Q Consensus 349 ~ 349 (356)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 66
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.4e-20 Score=132.95 Aligned_cols=92 Identities=30% Similarity=0.542 Sum_probs=84.9
Q ss_pred CCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
.......++++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|+|..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 33445677999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEecCCCccc
Q psy9313 98 IKVSYARPSSEA 109 (356)
Q Consensus 98 l~v~~~~~~~~~ 109 (356)
|+|.++.+....
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999999876543
No 67
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=132.33 Aligned_cols=84 Identities=25% Similarity=0.432 Sum_probs=78.0
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCC--ceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc----eeCC
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGE--VESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL----KLQN 95 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~--i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~----~~~g 95 (356)
....-.||||+|||+++|+++|+++|++||. +.+|++++|+.+|.++|||||+|.+.++|.+|++.|||. .|.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4566789999999999999999999999994 779999999999999999999999999999999999996 5899
Q ss_pred eEEEEEecCC
Q psy9313 96 KSIKVSYARP 105 (356)
Q Consensus 96 ~~l~v~~~~~ 105 (356)
+.|.|.|++.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999975
No 68
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=8.3e-20 Score=134.01 Aligned_cols=85 Identities=26% Similarity=0.544 Sum_probs=80.8
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy9313 348 KTHKP 352 (356)
Q Consensus 348 a~~~~ 352 (356)
++++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 98764
No 69
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-19 Score=130.61 Aligned_cols=91 Identities=20% Similarity=0.483 Sum_probs=83.6
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
........+.++|||+|||..+++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|.+|+..|+|..+.|+
T Consensus 8 ~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 86 (100)
T 2do4_A 8 VFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKEN 86 (100)
T ss_dssp CCCCSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC
T ss_pred CcCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3344556778999999999999999999999999999999999998 899999999999999999999999999999999
Q ss_pred EEEEEecCCCcc
Q psy9313 97 SIKVSYARPSSE 108 (356)
Q Consensus 97 ~l~v~~~~~~~~ 108 (356)
.|+|.++.++..
T Consensus 87 ~l~v~~a~~~~~ 98 (100)
T 2do4_A 87 IIKVAISNSGPS 98 (100)
T ss_dssp EEEEEECCCCSC
T ss_pred EEEEEECCCCCC
Confidence 999999987643
No 70
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=1.9e-19 Score=134.10 Aligned_cols=94 Identities=27% Similarity=0.502 Sum_probs=86.3
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+........+.++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|+|..|.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 5 SSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34455667789999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEecCCCccc
Q psy9313 96 KSIKVSYARPSSEA 109 (356)
Q Consensus 96 ~~l~v~~~~~~~~~ 109 (356)
+.|+|.|+.+....
T Consensus 85 ~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 85 RQIRTNWATRKPPA 98 (115)
T ss_dssp EECEEEESSCCCCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999876543
No 71
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.1e-20 Score=133.84 Aligned_cols=86 Identities=23% Similarity=0.389 Sum_probs=81.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
++++..
T Consensus 92 a~~~~~ 97 (105)
T 1x5u_A 92 ASAHNK 97 (105)
T ss_dssp TTTTSC
T ss_pred CCCCCc
Confidence 988764
No 72
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.9e-20 Score=134.01 Aligned_cols=85 Identities=27% Similarity=0.355 Sum_probs=80.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.||
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+.+..
T Consensus 91 ~~~~~ 95 (103)
T 2dnm_A 91 RYGRR 95 (103)
T ss_dssp SSCCS
T ss_pred CcCCC
Confidence 97653
No 73
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=130.67 Aligned_cols=81 Identities=15% Similarity=0.135 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcc--cCCeeE
Q psy9313 266 SLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYA--LGDRLL 343 (356)
Q Consensus 266 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~--l~gr~l 343 (356)
....++++|||+|||+.+|+++|+++|++||.|.+|.++++ +|+|||+|++.++|.+|++.|+|.. +.||.|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34457889999999999999999999999999999999864 7999999999999999999999876 789999
Q ss_pred EEEEecCCC
Q psy9313 344 QVSFKTHKP 352 (356)
Q Consensus 344 ~v~~a~~~~ 352 (356)
.|.|++++-
T Consensus 90 ~V~~S~~k~ 98 (100)
T 3r27_A 90 FVNYSTSQK 98 (100)
T ss_dssp EEEECSCSC
T ss_pred EEEeccccc
Confidence 999999875
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=9.8e-20 Score=135.66 Aligned_cols=84 Identities=43% Similarity=0.584 Sum_probs=80.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|++
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
++..
T Consensus 104 ~~~~ 107 (115)
T 2cpz_A 104 SKND 107 (115)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7653
No 75
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=133.08 Aligned_cols=84 Identities=33% Similarity=0.626 Sum_probs=80.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEE-EEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNV-KVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
++++|||+|||+.+++++|+++|++||.|..+ .++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56799999999999999999999999999999 99999899999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
.++..
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98764
No 76
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=6.3e-20 Score=135.58 Aligned_cols=87 Identities=24% Similarity=0.401 Sum_probs=82.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..++++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy9313 348 KTHKPLP 354 (356)
Q Consensus 348 a~~~~~~ 354 (356)
+++++.+
T Consensus 103 a~~~~~~ 109 (110)
T 1oo0_B 103 CFVKGPK 109 (110)
T ss_dssp SEESSCC
T ss_pred cccCCCC
Confidence 9987753
No 77
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=134.08 Aligned_cols=85 Identities=29% Similarity=0.455 Sum_probs=80.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 36678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 78
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=128.10 Aligned_cols=83 Identities=25% Similarity=0.518 Sum_probs=77.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
.+.++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 46789999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCC
Q psy9313 104 RPS 106 (356)
Q Consensus 104 ~~~ 106 (356)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 864
No 79
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.3e-20 Score=132.75 Aligned_cols=92 Identities=24% Similarity=0.359 Sum_probs=84.8
Q ss_pred CCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
.......+.++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|+|..|.|+.
T Consensus 4 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2cqb_A 4 GSSGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 83 (102)
T ss_dssp CSSCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEE
T ss_pred CcCCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34455678999999999999999999999999999999999999889999999999999999999999999999999999
Q ss_pred EEEEecCCCccc
Q psy9313 98 IKVSYARPSSEA 109 (356)
Q Consensus 98 l~v~~~~~~~~~ 109 (356)
|+|.++.+....
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2cqb_A 84 IRVNLAKPMRIK 95 (102)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 999999876543
No 80
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.82 E-value=7.4e-20 Score=145.29 Aligned_cols=85 Identities=25% Similarity=0.413 Sum_probs=80.2
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.++++|||+|||+.+++++|+++|++||.|..|.|+.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
.+++.
T Consensus 150 ~~~~~ 154 (165)
T 1rk8_A 150 FVKGP 154 (165)
T ss_dssp EECC-
T ss_pred cCCCC
Confidence 98764
No 81
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.1e-20 Score=136.80 Aligned_cols=82 Identities=28% Similarity=0.229 Sum_probs=78.4
Q ss_pred CCcEEEEecCCC------CCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC-ee
Q psy9313 270 SGWCIFVYNLAP------ETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD-RL 342 (356)
Q Consensus 270 ~~~~l~V~nlp~------~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g-r~ 342 (356)
.+++|||+|||+ .+++++|+++|++||.|.+|.|++++.||+++|||||+|.+.++|.+|++.|||..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457899999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEEEecCC
Q psy9313 343 LQVSFKTHK 351 (356)
Q Consensus 343 l~v~~a~~~ 351 (356)
|+|.+|.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999753
No 82
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=1.5e-19 Score=126.36 Aligned_cols=82 Identities=26% Similarity=0.447 Sum_probs=78.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~ 105 (356)
+++|||+|||.++++++|+++|++||.|.++.++.+..+|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred Cc
Q psy9313 106 SS 107 (356)
Q Consensus 106 ~~ 107 (356)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 83
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.3e-19 Score=129.82 Aligned_cols=89 Identities=26% Similarity=0.424 Sum_probs=82.5
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
++.....+.++++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 6 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 6 SGMSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp CCCCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 34445567788999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred eEEEEEecC
Q psy9313 96 KSIKVSYAR 104 (356)
Q Consensus 96 ~~l~v~~~~ 104 (356)
+.|+|.+++
T Consensus 86 ~~l~v~~ak 94 (94)
T 2e5h_A 86 RVIKASIAI 94 (94)
T ss_dssp EEEEEEECC
T ss_pred cEEEEEecC
Confidence 999999974
No 84
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.9e-20 Score=133.14 Aligned_cols=85 Identities=31% Similarity=0.488 Sum_probs=81.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 1x5s_A 90 GKSSD 94 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 98764
No 85
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.3e-20 Score=132.61 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=79.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCC---CCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQ---TYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
++++|||+|||+.+++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999999877 66899999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy9313 347 FKTHKPL 353 (356)
Q Consensus 347 ~a~~~~~ 353 (356)
|++++..
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9997664
No 86
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=2.8e-19 Score=133.18 Aligned_cols=91 Identities=30% Similarity=0.500 Sum_probs=84.2
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
......+.++|||+|||.++++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34455678999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEecCCCccc
Q psy9313 99 KVSYARPSSEA 109 (356)
Q Consensus 99 ~v~~~~~~~~~ 109 (356)
+|.++.+....
T Consensus 98 ~V~~a~~~~~~ 108 (115)
T 2cpz_A 98 KVQLKRSKNDS 108 (115)
T ss_dssp EEECCCCSCCC
T ss_pred EEEEcCCCCcC
Confidence 99999876543
No 87
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=130.47 Aligned_cols=83 Identities=31% Similarity=0.530 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 36778999999999999999999999999999999998 7899999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2d9p_A 91 QRKEE 95 (103)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98764
No 88
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.4e-19 Score=127.20 Aligned_cols=83 Identities=24% Similarity=0.392 Sum_probs=79.0
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
...++++|||+|||.++++++|+++|++||.|.++.++.+..++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 35678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecC
Q psy9313 102 YAR 104 (356)
Q Consensus 102 ~~~ 104 (356)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 89
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=132.41 Aligned_cols=93 Identities=28% Similarity=0.424 Sum_probs=85.4
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
........+.++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|+|..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 6 SGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp SCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 33445667889999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEEEecCCCccc
Q psy9313 97 SIKVSYARPSSEA 109 (356)
Q Consensus 97 ~l~v~~~~~~~~~ 109 (356)
.|+|.++.+....
T Consensus 86 ~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 86 PIRVNKASAHNKN 98 (105)
T ss_dssp BCEEEETTTTSCC
T ss_pred EEEEEECCCCCcC
Confidence 9999999876543
No 90
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=132.26 Aligned_cols=91 Identities=26% Similarity=0.527 Sum_probs=84.4
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
......+.++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34566788999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEecCCCccc
Q psy9313 99 KVSYARPSSEA 109 (356)
Q Consensus 99 ~v~~~~~~~~~ 109 (356)
+|.++.+....
T Consensus 85 ~v~~a~~~~~~ 95 (102)
T 1x5s_A 85 RVDQAGKSSDN 95 (102)
T ss_dssp EEEEEECCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876543
No 91
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=130.55 Aligned_cols=88 Identities=26% Similarity=0.382 Sum_probs=82.7
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
...++++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+..|+|..|.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45678999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecCCCccc
Q psy9313 102 YARPSSEA 109 (356)
Q Consensus 102 ~~~~~~~~ 109 (356)
++.+....
T Consensus 84 ~a~~~~~~ 91 (99)
T 1whw_A 84 PSTIKKEA 91 (99)
T ss_dssp ECCCCSTT
T ss_pred EcCCCccc
Confidence 99876543
No 92
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=3.7e-19 Score=130.28 Aligned_cols=84 Identities=30% Similarity=0.432 Sum_probs=79.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC---eeEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD---RLLQV 345 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g---r~l~v 345 (356)
.++++|||+|||+.+++++|+++|++||.|..|.++.++ +|.++|||||+|.+.++|.+|++.|||..+.| +.|+|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 467899999999999999999999999999999999998 78999999999999999999999999999998 99999
Q ss_pred EEecCCCC
Q psy9313 346 SFKTHKPL 353 (356)
Q Consensus 346 ~~a~~~~~ 353 (356)
.||+++..
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99998764
No 93
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=132.27 Aligned_cols=94 Identities=26% Similarity=0.483 Sum_probs=86.1
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEec-CCCCccceEEEEEecCHHHHHHHHHHh-CCcee
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRD-KTTAQSLGYGFVNYYRTEDAERAIIEL-NGLKL 93 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~~ 93 (356)
+........++++|||+|||..+++++|+++|++||.|..|.++.+ +.++.++|||||+|.+.++|.+|+..| +|..|
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 5 SSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp CCCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 4445566788999999999999999999999999999999999998 778999999999999999999999999 99999
Q ss_pred CCeEEEEEecCCCccc
Q psy9313 94 QNKSIKVSYARPSSEA 109 (356)
Q Consensus 94 ~g~~l~v~~~~~~~~~ 109 (356)
.|+.|.|.++.+....
T Consensus 85 ~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 85 YGRRLVLEWADSEVTV 100 (107)
T ss_dssp SSCBCEEEECCCCCCC
T ss_pred CCCEEEEEeCCCCCCC
Confidence 9999999999876543
No 94
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.5e-19 Score=132.60 Aligned_cols=92 Identities=25% Similarity=0.344 Sum_probs=83.5
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+...+....++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|+..|+|..|.|
T Consensus 13 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 92 (106)
T 1p27_B 13 DEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 92 (106)
T ss_dssp --CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC
Confidence 34444556778999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred eEEEEEecCCCc
Q psy9313 96 KSIKVSYARPSS 107 (356)
Q Consensus 96 ~~l~v~~~~~~~ 107 (356)
+.|.|.++.++.
T Consensus 93 ~~l~V~~a~~~~ 104 (106)
T 1p27_B 93 QPISVDWCFVRG 104 (106)
T ss_dssp SBCEEEESEESS
T ss_pred cEEEEEeecCCC
Confidence 999999997653
No 95
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.1e-19 Score=130.09 Aligned_cols=89 Identities=19% Similarity=0.420 Sum_probs=82.4
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.....++++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+. +++..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3445678999999999999999999999999999999999998889999999999999999999997 999999999999
Q ss_pred EEecCCCccc
Q psy9313 100 VSYARPSSEA 109 (356)
Q Consensus 100 v~~~~~~~~~ 109 (356)
|.++.++...
T Consensus 83 V~~a~~~~~~ 92 (99)
T 2dgs_A 83 VKRAEPRDSK 92 (99)
T ss_dssp EEECCCCCCC
T ss_pred EEECCCCccc
Confidence 9999876543
No 96
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.4e-20 Score=132.51 Aligned_cols=86 Identities=21% Similarity=0.365 Sum_probs=81.4
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCcee-EEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCee----E
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQ-NVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRL----L 343 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~----l 343 (356)
.+.++|||+|||+.+++++|+++|++||.|. +|.+++++.++.++|||||+|.+.++|.+|++.|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3677999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEEecCCCCC
Q psy9313 344 QVSFKTHKPLP 354 (356)
Q Consensus 344 ~v~~a~~~~~~ 354 (356)
+|.||++...+
T Consensus 87 ~v~~a~~~~~~ 97 (99)
T 2div_A 87 KLNYATYSGPS 97 (99)
T ss_dssp CEEETTCCSSS
T ss_pred EEeecCCCCCC
Confidence 99999987654
No 97
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=1e-19 Score=135.24 Aligned_cols=80 Identities=33% Similarity=0.504 Sum_probs=75.0
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
.++|||+|||+.+++++|+++|++||.|.+|+|+.+. +.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++++
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999999985 45799999999999999999999999999999999999987
Q ss_pred CC
Q psy9313 351 KP 352 (356)
Q Consensus 351 ~~ 352 (356)
+.
T Consensus 83 ~~ 84 (115)
T 4f25_A 83 RK 84 (115)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 98
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.9e-19 Score=133.26 Aligned_cols=85 Identities=26% Similarity=0.436 Sum_probs=80.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhC------CcccCCee
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN------GYALGDRL 342 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~------g~~l~gr~ 342 (356)
.++++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|| |..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 367789999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEecCCCC
Q psy9313 343 LQVSFKTHKPL 353 (356)
Q Consensus 343 l~v~~a~~~~~ 353 (356)
|+|.|+.++..
T Consensus 93 l~v~~a~~~~~ 103 (111)
T 1x4h_A 93 LKVDLAVTRDE 103 (111)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEECCCCcc
Confidence 99999998764
No 99
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2e-19 Score=132.22 Aligned_cols=85 Identities=24% Similarity=0.355 Sum_probs=80.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeC-CCCCCcceEEEEEEccHHHHHHHHHHh-CCcccCCeeEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD-PQTYKCKGFGFVCMTNYDEAVFAIQSL-NGYALGDRLLQVS 346 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~l~gr~l~v~ 346 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.+ +.++.++|||||+|.+.++|.+|++.| ||..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 36778999999999999999999999999999999999 788999999999999999999999999 9999999999999
Q ss_pred EecCCCC
Q psy9313 347 FKTHKPL 353 (356)
Q Consensus 347 ~a~~~~~ 353 (356)
|++++..
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9998764
No 100
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.7e-19 Score=128.74 Aligned_cols=84 Identities=26% Similarity=0.293 Sum_probs=79.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
++++|||+|||+.+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 6679999999999999999999999999999999984 78899999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy9313 350 HKPLPP 355 (356)
Q Consensus 350 ~~~~~~ 355 (356)
++..++
T Consensus 85 ~~~~~~ 90 (92)
T 2dgv_A 85 NASGPS 90 (92)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 887654
No 101
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=132.14 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=84.0
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
......++++|||+|||.++++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34456778999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred EEEecCCCccc
Q psy9313 99 KVSYARPSSEA 109 (356)
Q Consensus 99 ~v~~~~~~~~~ 109 (356)
.|.++++....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2dnm_A 86 RVQVARYGRRD 96 (103)
T ss_dssp EEEECSSCCSC
T ss_pred EEEECCcCCCC
Confidence 99999875443
No 102
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=3.9e-19 Score=129.64 Aligned_cols=83 Identities=29% Similarity=0.422 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++|| |..|.++.++.++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3678999999999999999999999997 999999999999999999999999999999999 89999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2dng_A 91 EGRKQ 95 (103)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 97664
No 103
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=130.32 Aligned_cols=92 Identities=29% Similarity=0.451 Sum_probs=84.1
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+........+.++|||+|||..+++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+..|+|..|.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 5 SSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp CCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 4445556778999999999999999999999999999999999988 78999999999999999999999999999999
Q ss_pred eEEEEEecCCCccc
Q psy9313 96 KSIKVSYARPSSEA 109 (356)
Q Consensus 96 ~~l~v~~~~~~~~~ 109 (356)
+.|.|.++.+....
T Consensus 83 ~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 83 KPLYVALAQRKEER 96 (103)
T ss_dssp SBCEEEECSSCCCC
T ss_pred cEEEEEEecccccC
Confidence 99999999876544
No 104
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=1.9e-19 Score=129.46 Aligned_cols=84 Identities=29% Similarity=0.474 Sum_probs=80.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 47899999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred CCcc
Q psy9313 105 PSSE 108 (356)
Q Consensus 105 ~~~~ 108 (356)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7654
No 105
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=4.7e-20 Score=137.41 Aligned_cols=105 Identities=24% Similarity=0.388 Sum_probs=94.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
+.++++|||+|||..+++++|+++|+.||.|.+|.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456899999999999999999999999999999999865 45689999999999999999999999999999999999
Q ss_pred cCCCcccccccceEEcCCCCCCCHHHHHHhhcccCC
Q psy9313 103 ARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGT 138 (356)
Q Consensus 103 ~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~g~ 138 (356)
+.+.... .+++...++++|.++|++||-
T Consensus 82 a~~~~~~--------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--------hhhhHhHhHHHHHHHHHHhCC
Confidence 9865443 567788899999999999984
No 106
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.4e-19 Score=128.77 Aligned_cols=87 Identities=28% Similarity=0.536 Sum_probs=81.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
..++++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 35689999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCccc
Q psy9313 103 ARPSSEA 109 (356)
Q Consensus 103 ~~~~~~~ 109 (356)
+.++...
T Consensus 82 a~~~~~~ 88 (95)
T 2dnz_A 82 VTERLDG 88 (95)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9876543
No 107
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=9.6e-20 Score=137.98 Aligned_cols=86 Identities=30% Similarity=0.521 Sum_probs=81.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..++++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
+.++.+
T Consensus 123 a~~~~p 128 (129)
T 2kxn_B 123 SITKRP 128 (129)
T ss_dssp CSSSSC
T ss_pred ecCCCC
Confidence 988763
No 108
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=132.03 Aligned_cols=91 Identities=20% Similarity=0.376 Sum_probs=84.3
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhC------Cce
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELN------GLK 92 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~------g~~ 92 (356)
......++++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+..++ +..
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~ 87 (111)
T 1x4h_A 8 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLK 87 (111)
T ss_dssp CCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEE
T ss_pred CCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcE
Confidence 34456779999999999999999999999999999999999998899999999999999999999999999 999
Q ss_pred eCCeEEEEEecCCCccc
Q psy9313 93 LQNKSIKVSYARPSSEA 109 (356)
Q Consensus 93 ~~g~~l~v~~~~~~~~~ 109 (356)
|.|+.|+|.++.+....
T Consensus 88 ~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 88 LDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp SSSCEEEEECCCCCCCC
T ss_pred EcCEEEEEEECCCCccC
Confidence 99999999999876543
No 109
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=9.9e-20 Score=137.91 Aligned_cols=91 Identities=23% Similarity=0.389 Sum_probs=84.5
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
......+.++++|||+|||..+++++|+++|++||.|.+|.++.++.++..+|||||+|.+.++|.+|+..|+|..|.|+
T Consensus 37 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 37 VGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 34455678899999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q psy9313 97 SIKVSYARPSS 107 (356)
Q Consensus 97 ~l~v~~~~~~~ 107 (356)
.|.|.++.++.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999998754
No 110
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-20 Score=132.10 Aligned_cols=80 Identities=21% Similarity=0.307 Sum_probs=73.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC--cccCCeeEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG--YALGDRLLQVS 346 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~l~gr~l~v~ 346 (356)
.+.++|||+|||+.+++++|+++|++||.|.+|+|+++ +|||||+|++.++|.+|++.|++ ..|.|+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 36779999999999999999999999999999999876 79999999999999999998864 78999999999
Q ss_pred EecCCCCC
Q psy9313 347 FKTHKPLP 354 (356)
Q Consensus 347 ~a~~~~~~ 354 (356)
||+++...
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99988754
No 111
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.9e-19 Score=132.97 Aligned_cols=92 Identities=24% Similarity=0.333 Sum_probs=83.6
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
....+....++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|+..|+|..|.|
T Consensus 16 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 16 LEPGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp --CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34445566788999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEecCCCc
Q psy9313 96 KSIKVSYARPSS 107 (356)
Q Consensus 96 ~~l~v~~~~~~~ 107 (356)
+.|.|.++.+..
T Consensus 96 ~~l~V~~a~~~~ 107 (110)
T 1oo0_B 96 QTIQVDWCFVKG 107 (110)
T ss_dssp EECEEEESEESS
T ss_pred cEEEEEEcccCC
Confidence 999999997653
No 112
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=131.78 Aligned_cols=87 Identities=29% Similarity=0.503 Sum_probs=82.1
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
..+.++++|||+|||..+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44667899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCCCc
Q psy9313 101 SYARPSS 107 (356)
Q Consensus 101 ~~~~~~~ 107 (356)
.+++++.
T Consensus 101 ~~a~~k~ 107 (108)
T 2jrs_A 101 GHVTERT 107 (108)
T ss_dssp ECSCSSC
T ss_pred EEcccCC
Confidence 9998764
No 113
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.1e-19 Score=127.46 Aligned_cols=81 Identities=20% Similarity=0.267 Sum_probs=77.5
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
.++|||+|||+.+++++|+++|++||.|.++.++.++.++.++|+|||+|.+.++|.+|+ .|||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999999999999999999999999999 8999999999999999987
Q ss_pred CC
Q psy9313 351 KP 352 (356)
Q Consensus 351 ~~ 352 (356)
+.
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 114
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=5.8e-19 Score=129.23 Aligned_cols=88 Identities=24% Similarity=0.473 Sum_probs=81.4
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC---eE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN---KS 97 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g---~~ 97 (356)
....++++|||+|||..+++++|+++|++||.|.+|.++.+. ++.++|||||+|.+.++|.+|+..|+|..+.| +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 345678999999999999999999999999999999999997 79999999999999999999999999999988 99
Q ss_pred EEEEecCCCccc
Q psy9313 98 IKVSYARPSSEA 109 (356)
Q Consensus 98 l~v~~~~~~~~~ 109 (356)
|.|.++.+....
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999999876544
No 115
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=130.49 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=79.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
...++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
+.++
T Consensus 93 ~~~~ 96 (98)
T 2cqp_A 93 SGPS 96 (98)
T ss_dssp SCSS
T ss_pred CCCC
Confidence 8653
No 116
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=127.67 Aligned_cols=83 Identities=14% Similarity=0.257 Sum_probs=77.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCC-cceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYK-CKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
..++|||+|||+.+++++|+++|++||.|.++.++.++.++. ++|+|||+|.+.++|.+|++.|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 456899999999999999999999999999999999987766 8999999999999999999999999999999999999
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 117
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.1e-19 Score=129.31 Aligned_cols=87 Identities=29% Similarity=0.474 Sum_probs=81.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeE-EEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESC-KLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i-~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
..++++|||+|||..+++++|+++|++||.|.++ .++.++.++.++|||||+|.+.++|.+|+..|+|..|.|+.|+|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3568999999999999999999999999999999 999998899999999999999999999998899999999999999
Q ss_pred ecCCCccc
Q psy9313 102 YARPSSEA 109 (356)
Q Consensus 102 ~~~~~~~~ 109 (356)
++.+....
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876543
No 118
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.7e-19 Score=128.06 Aligned_cols=85 Identities=28% Similarity=0.439 Sum_probs=78.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999864 3799999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy9313 348 KTHKPLP 354 (356)
Q Consensus 348 a~~~~~~ 354 (356)
+++++..
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9987753
No 119
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.8e-19 Score=132.02 Aligned_cols=93 Identities=26% Similarity=0.358 Sum_probs=85.1
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCce--------eEEEEecCCCCccceEEEEEecCHHHHHHHHHHh
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVE--------SCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~--------~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 88 (356)
+.......++++|||+|||..+++++|+++|++||.|. .|.++.++.++.++|||||+|.+.++|.+|+..|
T Consensus 6 p~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 85 (113)
T 2cpe_A 6 SGDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWF 85 (113)
T ss_dssp CCCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHH
T ss_pred CCCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHc
Confidence 34455677899999999999999999999999999999 6999999889999999999999999999999999
Q ss_pred CCceeCCeEEEEEecCCCccc
Q psy9313 89 NGLKLQNKSIKVSYARPSSEA 109 (356)
Q Consensus 89 ~g~~~~g~~l~v~~~~~~~~~ 109 (356)
||..|.|+.|+|.++++....
T Consensus 86 ~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 86 DGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTCEETTEECEEECSSCCCCS
T ss_pred CCCccCCCEEEEEECCCCCCC
Confidence 999999999999999876543
No 120
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=2.8e-19 Score=133.85 Aligned_cols=82 Identities=40% Similarity=0.608 Sum_probs=78.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||+.+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ec
Q psy9313 348 KT 349 (356)
Q Consensus 348 a~ 349 (356)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 85
No 121
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=133.42 Aligned_cols=83 Identities=27% Similarity=0.460 Sum_probs=78.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++||.|..|.++.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999998 89999999999999999999999999999999999999998
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
.+..
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7664
No 122
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=5e-19 Score=128.06 Aligned_cols=86 Identities=23% Similarity=0.375 Sum_probs=80.6
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCcee--------EEEEecCCCCccceEEEEEecCHHHHHHHHHHhCC
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVES--------CKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNG 90 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~--------i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 90 (356)
....+.+.++|||+|||.++++++|+++|++||.|.. +.++.++.+|.++|||||+|.+.++|.+|++.|+|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 3445677899999999999999999999999999999 99999988999999999999999999999999999
Q ss_pred ceeCCeEEEEEecC
Q psy9313 91 LKLQNKSIKVSYAR 104 (356)
Q Consensus 91 ~~~~g~~l~v~~~~ 104 (356)
..+.|+.|+|.+++
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999874
No 123
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.8e-19 Score=129.20 Aligned_cols=89 Identities=16% Similarity=0.251 Sum_probs=81.9
Q ss_pred CCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
.........++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|+|..|.|+.
T Consensus 7 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 7 GASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCCCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 33445667899999999999999999999999999998888888889999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q psy9313 98 IKVSYARPS 106 (356)
Q Consensus 98 l~v~~~~~~ 106 (356)
|+|.++..+
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999998754
No 124
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=128.93 Aligned_cols=80 Identities=33% Similarity=0.537 Sum_probs=76.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||+.+++++|+++|++||.|.+|.++.++. +.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 567999999999999999999999999999999999986 8999999999999999999999999999999999999987
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
+
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 125
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.6e-19 Score=132.76 Aligned_cols=84 Identities=30% Similarity=0.358 Sum_probs=79.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.+++ .|.|+.|+|.|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ecCCC
Q psy9313 348 KTHKP 352 (356)
Q Consensus 348 a~~~~ 352 (356)
|..+.
T Consensus 93 a~~~~ 97 (116)
T 2cqd_A 93 AYLGA 97 (116)
T ss_dssp STTTC
T ss_pred cccCC
Confidence 97654
No 126
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=5.3e-19 Score=133.51 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=81.2
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 267 LHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 267 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
...++++|||+|||+.+++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|.+|++.|||..|.|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34577899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy9313 347 FKTHKPL 353 (356)
Q Consensus 347 ~a~~~~~ 353 (356)
||..+..
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9998664
No 127
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=5.9e-19 Score=128.63 Aligned_cols=91 Identities=21% Similarity=0.391 Sum_probs=83.0
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
........+.++|||+|||..+++++|+++|++|| |.+|.++.++.++.++|||||+|.+.++|.+|+ .|+|..|.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 83 (103)
T 2dng_A 6 SGKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR 83 (103)
T ss_dssp CCCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe
Confidence 33445567789999999999999999999999997 999999999989999999999999999999999 8999999999
Q ss_pred EEEEEecCCCccc
Q psy9313 97 SIKVSYARPSSEA 109 (356)
Q Consensus 97 ~l~v~~~~~~~~~ 109 (356)
.|+|.++.+....
T Consensus 84 ~l~V~~a~~~~~~ 96 (103)
T 2dng_A 84 SLRVDIAEGRKQD 96 (103)
T ss_dssp ECEEEECCCCCCC
T ss_pred EEEEEEecCCCCC
Confidence 9999999876543
No 128
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-19 Score=129.62 Aligned_cols=83 Identities=23% Similarity=0.454 Sum_probs=78.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCC-CCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT-YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
.+.++|||+|||+.+++++|+++|++|| |..|.++.++.+ +.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999988 999999999999999999999 8999999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
++++..
T Consensus 91 a~~~~~ 96 (104)
T 1wi8_A 91 ADQAQD 96 (104)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 998764
No 129
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=2.1e-19 Score=131.85 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=79.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCccc---CCeeEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYAL---GDRLLQV 345 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l---~gr~l~v 345 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++.|||..+ .|+.|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 4678999999999999999999999999999999999999999999999999999999999999999987 8999999
Q ss_pred EEecCCC
Q psy9313 346 SFKTHKP 352 (356)
Q Consensus 346 ~~a~~~~ 352 (356)
.|+.++.
T Consensus 91 ~~a~~~~ 97 (106)
T 2dgp_A 91 KPADSES 97 (106)
T ss_dssp EECCCCS
T ss_pred EECCccc
Confidence 9998765
No 130
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-19 Score=129.33 Aligned_cols=87 Identities=26% Similarity=0.439 Sum_probs=81.7
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCce-eEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE--
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVE-SCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS-- 97 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~-~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~-- 97 (356)
....++++|||+|||..+++++|+++|++||.|. +|.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~ 83 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPA 83 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcc
Confidence 3456789999999999999999999999999999 9999999989999999999999999999999989999999999
Q ss_pred --EEEEecCCCc
Q psy9313 98 --IKVSYARPSS 107 (356)
Q Consensus 98 --l~v~~~~~~~ 107 (356)
|+|.|+++..
T Consensus 84 ~~l~v~~a~~~~ 95 (99)
T 2div_A 84 KRFKLNYATYSG 95 (99)
T ss_dssp EECCEEETTCCS
T ss_pred eeEEEeecCCCC
Confidence 9999998754
No 131
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=4.9e-19 Score=130.10 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=77.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.++++|||+|||+.+++++|+++|++||.|.+|.++.++ +|.++|+|||+|.+.++|.+|++.|||..|.|+.|+|.||
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 467899999999999999999999999999999999998 8999999999999999999999999999999999999998
Q ss_pred cC
Q psy9313 349 TH 350 (356)
Q Consensus 349 ~~ 350 (356)
.+
T Consensus 106 ~s 107 (107)
T 3ulh_A 106 TS 107 (107)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 132
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=128.54 Aligned_cols=82 Identities=26% Similarity=0.321 Sum_probs=77.1
Q ss_pred CCcEEEEecCCCCCcHHHHH----HhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLW----QLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
.+++|||+|||+.+++++|+ ++|++||.|.+|.++.++.+ +|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 56789999999999999999 99999999999999998765 889999999999999999999999999999999
Q ss_pred EEecCCCCC
Q psy9313 346 SFKTHKPLP 354 (356)
Q Consensus 346 ~~a~~~~~~ 354 (356)
.||++++.+
T Consensus 85 ~~a~~~~~~ 93 (96)
T 2dgx_A 85 SLATGASGP 93 (96)
T ss_dssp EECCCSSCC
T ss_pred EEcCCCCCC
Confidence 999987754
No 133
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6e-20 Score=129.00 Aligned_cols=81 Identities=27% Similarity=0.450 Sum_probs=77.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
++++|||+|||+.+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+++|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
+
T Consensus 84 s 84 (85)
T 1x4e_A 84 S 84 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 134
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2.4e-19 Score=135.88 Aligned_cols=87 Identities=26% Similarity=0.455 Sum_probs=82.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..++++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy9313 348 KTHKPLP 354 (356)
Q Consensus 348 a~~~~~~ 354 (356)
|.+++.+
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9877643
No 135
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=132.03 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=81.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|+.|.|.|
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q psy9313 348 KTHKPLP 354 (356)
Q Consensus 348 a~~~~~~ 354 (356)
+.++..+
T Consensus 92 a~~~~~~ 98 (105)
T 2dh8_A 92 CTPRGMQ 98 (105)
T ss_dssp SCCSSCC
T ss_pred ccCCCCC
Confidence 9987654
No 136
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=7.9e-20 Score=129.73 Aligned_cols=83 Identities=17% Similarity=0.233 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccC--CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVG--EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g--~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
.+|||+|||.++++++|+++|++|| .|.++.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred CCccc
Q psy9313 105 PSSEA 109 (356)
Q Consensus 105 ~~~~~ 109 (356)
+....
T Consensus 82 ~~~~~ 86 (90)
T 3p5t_L 82 KLEHH 86 (90)
T ss_dssp -----
T ss_pred CCccc
Confidence 76443
No 137
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.80 E-value=4.7e-19 Score=127.24 Aligned_cols=88 Identities=24% Similarity=0.402 Sum_probs=78.7
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
+..+..+.+.++|||+|||..+++++|+++|++||.|.+|.++.++. +.++|||||+|.+.++|.+|+..|+|..+.|+
T Consensus 7 ~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 7 GMFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp -----CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 34445667889999999999999999999999999999999999875 89999999999999999999999999999999
Q ss_pred EEEEEecCC
Q psy9313 97 SIKVSYARP 105 (356)
Q Consensus 97 ~l~v~~~~~ 105 (356)
.|+|.+++.
T Consensus 86 ~l~V~~a~~ 94 (95)
T 2ywk_A 86 PINVSGPSS 94 (95)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEcCC
Confidence 999999863
No 138
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=5.8e-19 Score=124.51 Aligned_cols=79 Identities=23% Similarity=0.345 Sum_probs=74.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|++ +++..|+|+.|.|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 366799999999999999999999999999999999999999999999999999999999997 5888999999999986
No 139
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=128.09 Aligned_cols=87 Identities=28% Similarity=0.576 Sum_probs=80.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCC---CCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKT---TAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
..++++|||+|||.++++++|+++|++||.|..|.++.++. ++.++|||||+|.+.++|.+|+..|+|..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 35689999999999999999999999999999999999876 568999999999999999999999999999999999
Q ss_pred EEecCCCccc
Q psy9313 100 VSYARPSSEA 109 (356)
Q Consensus 100 v~~~~~~~~~ 109 (356)
|.++.+....
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 140
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=4e-19 Score=130.31 Aligned_cols=91 Identities=23% Similarity=0.402 Sum_probs=84.0
Q ss_pred CCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCcee---C
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL---Q 94 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~---~ 94 (356)
..+..+.+.++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|+|..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 3445677889999999999999999999999999999999999988999999999999999999999999999987 8
Q ss_pred CeEEEEEecCCCcc
Q psy9313 95 NKSIKVSYARPSSE 108 (356)
Q Consensus 95 g~~l~v~~~~~~~~ 108 (356)
|+.|+|.++.+...
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 99999999987654
No 141
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-18 Score=126.99 Aligned_cols=89 Identities=31% Similarity=0.535 Sum_probs=80.5
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
......+.++|||+|||..+++++|+++|++||.|.+|.++.+.. .++|||||+|.+.++|.+|+..|+|..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 345567889999999999999999999999999999999999853 368999999999999999999999999999999
Q ss_pred EEEecCCCccc
Q psy9313 99 KVSYARPSSEA 109 (356)
Q Consensus 99 ~v~~~~~~~~~ 109 (356)
+|.++.+....
T Consensus 86 ~V~~a~~~~~~ 96 (103)
T 2cqi_A 86 KVNWATTPSSQ 96 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEECCCCccc
Confidence 99999876543
No 142
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.80 E-value=2.7e-19 Score=131.55 Aligned_cols=86 Identities=27% Similarity=0.437 Sum_probs=78.4
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
..+++|||+|||+.+++++|+++|++||.|.+|.+++++.+|.++|||||+|.+.++|.+|++.+ |..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 46678999999999999999999999999999999999999999999999999999999999976 59999999999999
Q ss_pred cCCCCCC
Q psy9313 349 THKPLPP 355 (356)
Q Consensus 349 ~~~~~~~ 355 (356)
.++...|
T Consensus 102 ~~~~~~~ 108 (109)
T 2rs2_A 102 FPRRAQP 108 (109)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9877543
No 143
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.2e-19 Score=131.82 Aligned_cols=85 Identities=25% Similarity=0.275 Sum_probs=80.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCcee--------EEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQ--------NVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 340 (356)
...++|||+|||+.+++++|+++|++||.|. .|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 3678999999999999999999999999998 69999999999999999999999999999999999999999
Q ss_pred eeEEEEEecCCCC
Q psy9313 341 RLLQVSFKTHKPL 353 (356)
Q Consensus 341 r~l~v~~a~~~~~ 353 (356)
+.|+|.|++.+..
T Consensus 93 ~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 93 SKLKVSLARKKPP 105 (113)
T ss_dssp EECEEECSSCCCC
T ss_pred CEEEEEECCCCCC
Confidence 9999999998764
No 144
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4e-19 Score=130.06 Aligned_cols=93 Identities=28% Similarity=0.419 Sum_probs=85.3
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+......+.+.++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|
T Consensus 6 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 6 SGMNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp CCCCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 444556678899999999999999999999999999999999999988999999999999999999999977 9999999
Q ss_pred eEEEEEecCCCccc
Q psy9313 96 KSIKVSYARPSSEA 109 (356)
Q Consensus 96 ~~l~v~~~~~~~~~ 109 (356)
+.|.|.++.++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 85 RNIDPKPCTPRGMQ 98 (105)
T ss_dssp EEEBCCCSCCSSCC
T ss_pred EEEEEEEccCCCCC
Confidence 99999999876544
No 145
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=3.6e-20 Score=131.65 Aligned_cols=82 Identities=34% Similarity=0.405 Sum_probs=74.3
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCC
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~ 351 (356)
++|||+|||..+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.+ |.+|+..|||..++|+.|+|.||.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999999999999999999999999 99999999999999999999999987
Q ss_pred CCC
Q psy9313 352 PLP 354 (356)
Q Consensus 352 ~~~ 354 (356)
+.+
T Consensus 81 ~~~ 83 (90)
T 2ki2_A 81 KSL 83 (90)
T ss_dssp ---
T ss_pred CCC
Confidence 754
No 146
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=2.3e-19 Score=128.90 Aligned_cols=87 Identities=17% Similarity=0.278 Sum_probs=76.3
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
......+.++|||+|||..+++++|+++|++||.|..+.++.++.++..+|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l 87 (95)
T 2ek1_A 8 SSSGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (95)
T ss_dssp -------CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEE
Confidence 34455667999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecCC
Q psy9313 99 KVSYARP 105 (356)
Q Consensus 99 ~v~~~~~ 105 (356)
+|.++.+
T Consensus 88 ~v~~a~s 94 (95)
T 2ek1_A 88 KLSGPSS 94 (95)
T ss_dssp EEECCC-
T ss_pred EEEeccC
Confidence 9998763
No 147
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=3.5e-19 Score=127.99 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=71.6
Q ss_pred CCCcEEEEecCCC-CCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCc--ccCCeeEEE
Q psy9313 269 GSGWCIFVYNLAP-ETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY--ALGDRLLQV 345 (356)
Q Consensus 269 ~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--~l~gr~l~v 345 (356)
.++++|||+|||+ .+++++|+++|++||.|.+|.|+++ +|||||+|++.++|..|++.||+. .|.||.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999876 689999999999999999999865 499999999
Q ss_pred EEecCCC
Q psy9313 346 SFKTHKP 352 (356)
Q Consensus 346 ~~a~~~~ 352 (356)
.||+.+.
T Consensus 87 ~~a~~~~ 93 (102)
T 1x4d_A 87 HLSQKYK 93 (102)
T ss_dssp EEECCCT
T ss_pred EECCCCC
Confidence 9999644
No 148
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=134.48 Aligned_cols=86 Identities=27% Similarity=0.435 Sum_probs=81.7
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
....++|||+|||+.+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
|+++..
T Consensus 119 a~~~~~ 124 (139)
T 1u6f_A 119 AASGHQ 124 (139)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 998764
No 149
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-19 Score=131.45 Aligned_cols=93 Identities=26% Similarity=0.390 Sum_probs=84.4
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
......+.+.++|||+|||..+++++|+++|++||.|.+|.++.++.++.++|||||+|.+.++|.+|+..+++ .|.|+
T Consensus 8 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 8 MHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp CCCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 34456677899999999999999999999999999999999999988999999999999999999999999898 89999
Q ss_pred EEEEEecCCCcccc
Q psy9313 97 SIKVSYARPSSEAI 110 (356)
Q Consensus 97 ~l~v~~~~~~~~~~ 110 (356)
.|+|.++.+.....
T Consensus 87 ~l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 87 KANVNLAYLGAKPR 100 (116)
T ss_dssp ECEEEESTTTCCCC
T ss_pred EEEEEEcccCCCcc
Confidence 99999997654433
No 150
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=125.56 Aligned_cols=79 Identities=19% Similarity=0.327 Sum_probs=72.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHh--CCcccCCeeEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL--NGYALGDRLLQVS 346 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~g~~l~gr~l~v~ 346 (356)
.++++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|++.++|.+|++.| ++..+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998875 799999999999999999977 4678999999999
Q ss_pred EecCCCC
Q psy9313 347 FKTHKPL 353 (356)
Q Consensus 347 ~a~~~~~ 353 (356)
||+++..
T Consensus 87 ~a~~~~~ 93 (101)
T 2cq1_A 87 YSNHKEL 93 (101)
T ss_dssp ECSCSSC
T ss_pred EcCcccC
Confidence 9998765
No 151
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=128.67 Aligned_cols=88 Identities=19% Similarity=0.379 Sum_probs=81.3
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCC-CccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT-AQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
.....+.++|||+|||..+++++|+++|+.|| |.+|.++.++.+ +.++|||||+|.+.++|.+|+ .|++..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 34456789999999999999999999999999 999999999887 899999999999999999999 999999999999
Q ss_pred EEEecCCCccc
Q psy9313 99 KVSYARPSSEA 109 (356)
Q Consensus 99 ~v~~~~~~~~~ 109 (356)
.|.++.+....
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876544
No 152
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=126.14 Aligned_cols=92 Identities=25% Similarity=0.453 Sum_probs=82.6
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+........+.++|||+|||..+++++|+++|++||.|.+|.++.+.. .++|||||+|.+.++|.+|+..|+|..|.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 5 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344556678899999999999999999999999999999999998853 388999999999999999999999999999
Q ss_pred eEEEEEecCCCccc
Q psy9313 96 KSIKVSYARPSSEA 109 (356)
Q Consensus 96 ~~l~v~~~~~~~~~ 109 (356)
+.|+|.++.+....
T Consensus 83 ~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 83 RKIEVNNATARVMT 96 (103)
T ss_dssp EECEEEECCSSCCC
T ss_pred EEEEEEEcccCCCC
Confidence 99999999876543
No 153
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=124.27 Aligned_cols=80 Identities=18% Similarity=0.288 Sum_probs=76.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++| .|..|.++.+ .+|+++|+|||+|.+.++|.+|+. |||..|.|+.|.|.+++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 56799999999999999999999999 9999999999 789999999999999999999999 99999999999999998
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
+++
T Consensus 86 ~~~ 88 (91)
T 2dgw_A 86 SGP 88 (91)
T ss_dssp SCC
T ss_pred cCC
Confidence 875
No 154
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.79 E-value=9.7e-19 Score=123.35 Aligned_cols=82 Identities=22% Similarity=0.452 Sum_probs=76.7
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
..+.+.++|||+|||..+++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+ .+++..+.|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEE
Confidence 45678899999999999999999999999999999999999889999999999999999999999 56899999999999
Q ss_pred Eec
Q psy9313 101 SYA 103 (356)
Q Consensus 101 ~~~ 103 (356)
.++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 155
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=124.99 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=78.2
Q ss_pred CCCCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHh--CCc
Q psy9313 14 HRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL--NGL 91 (356)
Q Consensus 14 ~~~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~g~ 91 (356)
..++.......++++|||+|||..+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.| ++.
T Consensus 3 ~~s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~ 76 (101)
T 2cq1_A 3 SGSSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTP 76 (101)
T ss_dssp CCCCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCc
Confidence 344555666778999999999999999999999999999999988765 579999999999999999876 467
Q ss_pred eeCCeEEEEEecCCCccc
Q psy9313 92 KLQNKSIKVSYARPSSEA 109 (356)
Q Consensus 92 ~~~g~~l~v~~~~~~~~~ 109 (356)
.+.|+.|.|.++++....
T Consensus 77 ~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 77 HLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp EETTEECEEEECSCSSCC
T ss_pred eECCcEEEEEEcCcccCc
Confidence 899999999999876443
No 156
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=130.78 Aligned_cols=88 Identities=32% Similarity=0.559 Sum_probs=82.4
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
..+.+.++|||+|||..+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34566899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (104)
T 1p1t_A 83 DNAASEKN 90 (104)
T ss_dssp EETTCTTH
T ss_pred EeCCCccc
Confidence 99987654
No 157
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=130.13 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=74.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+++|+++|+++|++||.|.+|.+++++. |.++|||||+|.+.++|.+|+. ++|..|.|+.|.|.|+.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 456899999999999999999999999999999999987 9999999999999999999999 99999999999999976
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 158
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=1.9e-19 Score=129.31 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=76.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 45799999999999999999999999999999999998999999999999999999999999999999999999999987
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
+
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 5
No 159
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.79 E-value=1.3e-19 Score=131.17 Aligned_cols=84 Identities=23% Similarity=0.350 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCC------CCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC-
Q psy9313 23 NEQNSNLIVNYVPQ------TMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN- 95 (356)
Q Consensus 23 ~~~~~~l~v~nlp~------~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g- 95 (356)
...+++|||+|||. .+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34578999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEecCCC
Q psy9313 96 KSIKVSYARPS 106 (356)
Q Consensus 96 ~~l~v~~~~~~ 106 (356)
+.|+|.++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999764
No 160
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6e-19 Score=129.99 Aligned_cols=81 Identities=21% Similarity=0.297 Sum_probs=74.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC--cccCCeeEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG--YALGDRLLQV 345 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~l~gr~l~v 345 (356)
..++++|||+|||+.+++++|+++|++||.|.+|.++++ +|||||+|++.++|.+|++.|++ ..|.|+.|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346789999999999999999999999999999999876 79999999999999999999874 6899999999
Q ss_pred EEecCCCCC
Q psy9313 346 SFKTHKPLP 354 (356)
Q Consensus 346 ~~a~~~~~~ 354 (356)
.||+++...
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999988754
No 161
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=3.2e-19 Score=139.51 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=77.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCC--ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFG--AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..++|||+|||+.+++++|+++|++|| .|.+|+++.++.+|.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecCC
Q psy9313 348 KTHK 351 (356)
Q Consensus 348 a~~~ 351 (356)
|..+
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 162
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=6.5e-19 Score=131.83 Aligned_cols=85 Identities=31% Similarity=0.483 Sum_probs=79.7
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.....+.++|||+|||.++++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|++.|||..|.|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34567789999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEecC
Q psy9313 100 VSYAR 104 (356)
Q Consensus 100 v~~~~ 104 (356)
|.+++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99874
No 163
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.4e-18 Score=126.63 Aligned_cols=83 Identities=20% Similarity=0.378 Sum_probs=77.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|.+|.++.+.. .++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 3678999999999999999999999999999999999854 36899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqi_A 91 TTPSS 95 (103)
T ss_dssp CCTTC
T ss_pred CCCcc
Confidence 98654
No 164
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-19 Score=129.93 Aligned_cols=91 Identities=21% Similarity=0.318 Sum_probs=80.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS 106 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 106 (356)
++|||+|||.++++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 5689999999999999999999999999999999999765
Q ss_pred ccc----------ccccceEEcCCCC
Q psy9313 107 SEA----------IKRANLYVSGLPK 122 (356)
Q Consensus 107 ~~~----------~~~~~l~v~nl~~ 122 (356)
... ....++||+||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCCC
Confidence 421 1255799999873
No 165
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=126.09 Aligned_cols=83 Identities=28% Similarity=0.376 Sum_probs=78.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|++ ++..|.|+.|.|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 356789999999999999999999999999999999999999999999999999999999999 577999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 98764
No 166
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.1e-19 Score=130.50 Aligned_cols=83 Identities=30% Similarity=0.441 Sum_probs=79.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
++.
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 764
No 167
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=131.04 Aligned_cols=84 Identities=24% Similarity=0.325 Sum_probs=77.9
Q ss_pred CCcEEEEecCCCCCcHHHHH---HhhcCCCceeEEEEeeCCCCC---CcceEEEEEEccHHHHHHHHHHhCCcccCCeeE
Q psy9313 270 SGWCIFVYNLAPETEDNVLW---QLFGPFGAVQNVKVVRDPQTY---KCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLL 343 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~---~~f~~~G~v~~v~i~~~~~~~---~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l 343 (356)
..++|||+|||+.+++++|+ ++|++||.|..|.++.+..++ .++|||||+|.+.++|.+|++.|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 45689999999999999999 999999999999999887654 456999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q psy9313 344 QVSFKTHKPL 353 (356)
Q Consensus 344 ~v~~a~~~~~ 353 (356)
+|.||+++++
T Consensus 94 ~V~~a~~k~~ 103 (111)
T 2cpi_A 94 KASLGTTKYC 103 (111)
T ss_dssp EEESCCCCSC
T ss_pred EEEecccccc
Confidence 9999999874
No 168
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=130.60 Aligned_cols=82 Identities=24% Similarity=0.484 Sum_probs=75.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCC-CCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP-QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
...++|||+|||+.+++++|+++|++|| |.+|.++.++ .+|+++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4678999999999999999999999999 9999999998 68999999999999999999999 8999999999999999
Q ss_pred ecCCC
Q psy9313 348 KTHKP 352 (356)
Q Consensus 348 a~~~~ 352 (356)
+++++
T Consensus 95 a~~~~ 99 (100)
T 2j76_E 95 ADQAQ 99 (100)
T ss_dssp CCCSC
T ss_pred ccCCC
Confidence 98764
No 169
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=130.00 Aligned_cols=84 Identities=27% Similarity=0.508 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
..+.++|||+|||.++++++|+++|++||.|.+|.++.+. +|.++|||||+|.+.++|.+|++.|||..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3557899999999999999999999999999999999997 899999999999999999999999999999999999999
Q ss_pred cCCCc
Q psy9313 103 ARPSS 107 (356)
Q Consensus 103 ~~~~~ 107 (356)
+++..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98654
No 170
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.7e-18 Score=127.64 Aligned_cols=82 Identities=30% Similarity=0.350 Sum_probs=77.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.++++|||+|||+.+++++|+++|++||.|.+|.++.++ ++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 356789999999999999999999999999999999997 5899999999999999999999999999999999999999
Q ss_pred cCC
Q psy9313 349 THK 351 (356)
Q Consensus 349 ~~~ 351 (356)
+..
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 743
No 171
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.6e-19 Score=126.83 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=74.6
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhC--CceeCCeEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELN--GLKLQNKSI 98 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~l 98 (356)
..+.++++|||+|||.+++|++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.++ +..|.|+.|
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 45778999999999999999999999999999999999875 5799999999999999998886 478999999
Q ss_pred EEEecCCCccc
Q psy9313 99 KVSYARPSSEA 109 (356)
Q Consensus 99 ~v~~~~~~~~~ 109 (356)
.|.+++++...
T Consensus 85 ~V~~A~~~~~~ 95 (105)
T 1sjq_A 85 YIQFSNHKELK 95 (105)
T ss_dssp CBCCCSSSSCC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 172
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=4.5e-19 Score=121.10 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=68.9
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.-|+|+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.|||..+.||.|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 44699999999999999999999999999999866 48999999999999999999999999999999999985
No 173
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=5.4e-19 Score=129.15 Aligned_cols=82 Identities=30% Similarity=0.502 Sum_probs=78.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcC-CCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcc-cCCeeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGP-FGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYA-LGDRLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-l~gr~l~v~~ 347 (356)
++++|||+|||+.+++++|+++|++ ||.|.+|.++.++ +|.++|||||+|.+.++|.+|++.|||.. |.|+.|+|.|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 5678999999999999999999999 9999999999998 89999999999999999999999999999 9999999999
Q ss_pred ecCCC
Q psy9313 348 KTHKP 352 (356)
Q Consensus 348 a~~~~ 352 (356)
+.++.
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98665
No 174
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.78 E-value=1.1e-18 Score=123.60 Aligned_cols=83 Identities=22% Similarity=0.394 Sum_probs=78.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
...++|||+|||.++++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|+ .++|..+.|+.|+|.++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 34689999999999999999999999999999999999888999999999999999999999 99999999999999999
Q ss_pred CCCc
Q psy9313 104 RPSS 107 (356)
Q Consensus 104 ~~~~ 107 (356)
++..
T Consensus 83 ~~~~ 86 (89)
T 3ucg_A 83 RTNR 86 (89)
T ss_dssp TTTS
T ss_pred cCCC
Confidence 8754
No 175
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=129.83 Aligned_cols=83 Identities=29% Similarity=0.420 Sum_probs=77.5
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
....++|||+|||..+++++|+++|++||.|.+|.++.+. +.++|||||+|.+.++|.+|++.|||..|+|+.|+|.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999885 45899999999999999999999999999999999999
Q ss_pred ecCCC
Q psy9313 348 KTHKP 352 (356)
Q Consensus 348 a~~~~ 352 (356)
++++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 99875
No 176
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-19 Score=137.25 Aligned_cols=83 Identities=23% Similarity=0.445 Sum_probs=78.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeE--EEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCc----ccCCee
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQN--VKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY----ALGDRL 342 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~----~l~gr~ 342 (356)
...++|||+|||+.+|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|||. .|+||.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 46789999999999999999999999999977 99999999999999999999999 999999999999 999999
Q ss_pred EEEEEecCCC
Q psy9313 343 LQVSFKTHKP 352 (356)
Q Consensus 343 l~v~~a~~~~ 352 (356)
|.|.|++++.
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998753
No 177
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=123.98 Aligned_cols=83 Identities=16% Similarity=0.418 Sum_probs=77.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCc-cceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ-SLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
.+++|||+|||.++++++|+++|++||.|.++.++.+..++. ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 578999999999999999999999999999999999877665 8999999999999999999999999999999999999
Q ss_pred CCCc
Q psy9313 104 RPSS 107 (356)
Q Consensus 104 ~~~~ 107 (356)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 178
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-18 Score=132.03 Aligned_cols=91 Identities=37% Similarity=0.627 Sum_probs=84.2
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
....+...++|||+|||.++++++|+++|+.||.|.+|.++.++.++.++|||||+|.+.++|.+|+..|+|..|.|+.|
T Consensus 35 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 35 MNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp SSCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred cCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34456778999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred EEEecCCCccc
Q psy9313 99 KVSYARPSSEA 109 (356)
Q Consensus 99 ~v~~~~~~~~~ 109 (356)
+|.++.+....
T Consensus 115 ~v~~a~~~~~~ 125 (139)
T 1u6f_A 115 KVALAASGHQR 125 (139)
T ss_dssp EEEESSCCCCC
T ss_pred EEEECCCCCCC
Confidence 99999876443
No 179
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.78 E-value=1e-18 Score=128.49 Aligned_cols=92 Identities=25% Similarity=0.462 Sum_probs=76.2
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
.....+.+.+.++|||+|||.++++++|+++|+.||.|.+|.++.++.+|.++|||||+|.+.++|.+|+.. .+..+.|
T Consensus 15 ~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~-~~~~l~g 93 (109)
T 2rs2_A 15 VPRGSHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDS 93 (109)
T ss_dssp -----------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHS-SCEEETT
T ss_pred CccccccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHH-CCCcCCC
Confidence 344445677899999999999999999999999999999999999988899999999999999999999965 5699999
Q ss_pred eEEEEEecCCCcc
Q psy9313 96 KSIKVSYARPSSE 108 (356)
Q Consensus 96 ~~l~v~~~~~~~~ 108 (356)
+.|.|.++.+...
T Consensus 94 ~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 94 KTIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEEECCCCCC
T ss_pred EEEEEEEccCCCC
Confidence 9999999987643
No 180
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=3.7e-18 Score=128.81 Aligned_cols=87 Identities=21% Similarity=0.408 Sum_probs=81.6
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
....++++|||+|||..+++++|+++|++||.|.+|.++.+. +|.++|||||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 456788999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.++.+...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99986543
No 181
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-18 Score=124.20 Aligned_cols=90 Identities=22% Similarity=0.345 Sum_probs=82.0
Q ss_pred CCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
.......+.++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+. ++..|.|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~ 84 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW 84 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE
Confidence 344566778999999999999999999999999999999999998899999999999999999999996 688999999
Q ss_pred EEEEecCCCccc
Q psy9313 98 IKVSYARPSSEA 109 (356)
Q Consensus 98 l~v~~~~~~~~~ 109 (356)
|.|.++.+....
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cqg_A 85 CDCKLPNSKQSQ 96 (103)
T ss_dssp EEEECCCTTCCC
T ss_pred EEEEecCCCCcC
Confidence 999999876544
No 182
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.4e-18 Score=125.89 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=72.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCc--ccCCeeEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY--ALGDRLLQVS 346 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--~l~gr~l~v~ 346 (356)
.++++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|++.++|.+|++.|++. .|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 36789999999999999999999999999999998764 799999999999999999998765 5999999999
Q ss_pred EecCCCC
Q psy9313 347 FKTHKPL 353 (356)
Q Consensus 347 ~a~~~~~ 353 (356)
|++++..
T Consensus 87 ~a~~~~~ 93 (104)
T 1wex_A 87 YSTSKRI 93 (104)
T ss_dssp ECSSSSC
T ss_pred EccCccc
Confidence 9997653
No 183
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.5e-18 Score=127.04 Aligned_cols=88 Identities=23% Similarity=0.327 Sum_probs=81.1
Q ss_pred CCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
.......++++|||+|||..+++++|+++|++||.|.+|.++.++ ++.++|||||+|.+.++|.+|+..|+|..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 7 GALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 344556778999999999999999999999999999999999987 5999999999999999999999999999999999
Q ss_pred EEEEecCCC
Q psy9313 98 IKVSYARPS 106 (356)
Q Consensus 98 l~v~~~~~~ 106 (356)
|.|.++.+.
T Consensus 86 l~v~~a~~~ 94 (114)
T 2do0_A 86 MHVKMDERA 94 (114)
T ss_dssp CEEEECSCC
T ss_pred EEEEEcccC
Confidence 999998754
No 184
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.78 E-value=1.4e-18 Score=123.89 Aligned_cols=86 Identities=28% Similarity=0.394 Sum_probs=79.6
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
...++++|||+|||..+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4567899999999999999999999999999999999884 68899999999999999999999999999999999999
Q ss_pred ecCCCccc
Q psy9313 102 YARPSSEA 109 (356)
Q Consensus 102 ~~~~~~~~ 109 (356)
++++....
T Consensus 82 ~a~~~~~~ 89 (92)
T 2dgv_A 82 IDRNASGP 89 (92)
T ss_dssp ECSCCSSC
T ss_pred EcCCCCCC
Confidence 99876543
No 185
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.4e-18 Score=122.35 Aligned_cols=84 Identities=14% Similarity=0.306 Sum_probs=78.4
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
......++|||+|||.++++++|+++|+.| .|.+|.++.+ .+|.++|||||+|.+.++|.+|+. ++|..|.|+.|.|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 345678999999999999999999999999 9999999999 689999999999999999999998 9999999999999
Q ss_pred EecCCCc
Q psy9313 101 SYARPSS 107 (356)
Q Consensus 101 ~~~~~~~ 107 (356)
.++.+..
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9998753
No 186
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=123.65 Aligned_cols=80 Identities=9% Similarity=0.115 Sum_probs=72.2
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCce--eCCeEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLK--LQNKSI 98 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~--~~g~~l 98 (356)
....++++|||+|||.++|+++|+++|++||.|.++.+++. +|+|||+|.+.++|.+|++.|++.. +.|+.|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34567899999999999999999999999999999998753 4799999999999999999999875 789999
Q ss_pred EEEecCCC
Q psy9313 99 KVSYARPS 106 (356)
Q Consensus 99 ~v~~~~~~ 106 (356)
.|.+++++
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999865
No 187
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=2.3e-18 Score=135.54 Aligned_cols=85 Identities=22% Similarity=0.335 Sum_probs=80.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||.|||+.+++++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87653
No 188
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=129.67 Aligned_cols=84 Identities=17% Similarity=0.192 Sum_probs=78.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCc-eeEEEEe-eCCCCCCcceEEEEEEccHHHHHHHHHHhC--CcccCCeeEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGA-VQNVKVV-RDPQTYKCKGFGFVCMTNYDEAVFAIQSLN--GYALGDRLLQV 345 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~-~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~l~gr~l~v 345 (356)
+.++|||+|||+.+++++|+++|++||. |.+|.++ .+..+|.++|||||+|.+.++|.+|++.|| +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5679999999999999999999999998 9999998 788888999999999999999999999996 58999999999
Q ss_pred EEecCCCC
Q psy9313 346 SFKTHKPL 353 (356)
Q Consensus 346 ~~a~~~~~ 353 (356)
.||+++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99998764
No 189
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=2.1e-18 Score=126.70 Aligned_cols=85 Identities=22% Similarity=0.417 Sum_probs=79.1
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
......++++|||+|||..+++++|+++|++||.|.+|.++.+. +|.++|||||+|.+.++|.+|+..|+|..|.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34556789999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EEEecC
Q psy9313 99 KVSYAR 104 (356)
Q Consensus 99 ~v~~~~ 104 (356)
+|.++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999875
No 190
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-18 Score=126.75 Aligned_cols=82 Identities=22% Similarity=0.331 Sum_probs=75.9
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++.+ +.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 46789999999999999999999999999999999665 457999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 97 ~~~~~ 101 (109)
T 1x4a_A 97 RSGRG 101 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98764
No 191
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=123.93 Aligned_cols=83 Identities=25% Similarity=0.285 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHH----HHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQ----HLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~----~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
....++|||+|||..+++++|+ ++|++||.|.+|.++.++.+ +|||||+|.+.++|.+|++.|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 4467899999999999999999 99999999999999988654 7899999999999999999999999999999
Q ss_pred EEEecCCCcc
Q psy9313 99 KVSYARPSSE 108 (356)
Q Consensus 99 ~v~~~~~~~~ 108 (356)
+|.++++...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 192
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.3e-19 Score=122.77 Aligned_cols=75 Identities=23% Similarity=0.348 Sum_probs=72.4
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|+|||+|.+.++|.+|++ |||..++|+.|+|.||
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 38999999999999999999999999999999999999999999999999999999998 9999999999999986
No 193
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=130.23 Aligned_cols=93 Identities=19% Similarity=0.383 Sum_probs=83.8
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
.........+.++|||+|||..+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|+.. ++..|.|
T Consensus 17 ~~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 95 (116)
T 1x4b_A 17 LERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG 95 (116)
T ss_dssp CCCCCCHHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT
T ss_pred hhhcccccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC
Confidence 334444566779999999999999999999999999999999999988999999999999999999999966 9999999
Q ss_pred eEEEEEecCCCccc
Q psy9313 96 KSIKVSYARPSSEA 109 (356)
Q Consensus 96 ~~l~v~~~~~~~~~ 109 (356)
+.|+|.++.+....
T Consensus 96 ~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 96 RVVEPKRAVAREES 109 (116)
T ss_dssp EEEEEECCSSCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876544
No 194
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=5.3e-19 Score=134.71 Aligned_cols=91 Identities=20% Similarity=0.367 Sum_probs=83.2
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCcee--EEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc---
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVES--CKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL--- 91 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~--i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--- 91 (356)
...+.....+++|||+|||.++++++|+++|++||.|.. |+++.++.+|.++|||||+|.+. +|.+|+..|||.
T Consensus 14 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 14 GSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 344455678899999999999999999999999999976 99999998999999999999999 999999999999
Q ss_pred -eeCCeEEEEEecCCCcc
Q psy9313 92 -KLQNKSIKVSYARPSSE 108 (356)
Q Consensus 92 -~~~g~~l~v~~~~~~~~ 108 (356)
.+.|+.|.|.++.+...
T Consensus 93 ~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCGGGCCCCCEECCCSCC
T ss_pred ccCCCEEEEEEECCCCCC
Confidence 99999999999987643
No 195
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.1e-19 Score=126.89 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=77.4
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
......++|||+|||.++|+++|+++|++||.|.+|.++.++. |.++|||||+|.+.++|.+|+. ++|..+.|+.|.|
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEE
Confidence 3456679999999999999999999999999999999999986 9999999999999999999996 8999999999999
Q ss_pred EecCC
Q psy9313 101 SYARP 105 (356)
Q Consensus 101 ~~~~~ 105 (356)
.++..
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 99764
No 196
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.77 E-value=1.1e-18 Score=132.21 Aligned_cols=90 Identities=26% Similarity=0.360 Sum_probs=83.1
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
......++++|||+|||..+++++|+++|++||.|.+|.++.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 94 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 94 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34556678999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecCCCcc
Q psy9313 99 KVSYARPSSE 108 (356)
Q Consensus 99 ~v~~~~~~~~ 108 (356)
.|.++.+...
T Consensus 95 ~v~~a~~~~~ 104 (126)
T 3ex7_B 95 SVDWCFVRGP 104 (126)
T ss_dssp EEEESEESSS
T ss_pred EEEEecCCCC
Confidence 9999976543
No 197
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=127.31 Aligned_cols=87 Identities=25% Similarity=0.400 Sum_probs=81.1
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhc-cCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCce-eCCeEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSS-VGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLK-LQNKSI 98 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~-~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~-~~g~~l 98 (356)
....++++|||+|||..+++++|+++|++ ||.|.+|.++.+. +|.++|||||+|.+.++|.+|++.|+|.. +.|+.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567899999999999999999999999 9999999999998 89999999999999999999999999999 999999
Q ss_pred EEEecCCCcc
Q psy9313 99 KVSYARPSSE 108 (356)
Q Consensus 99 ~v~~~~~~~~ 108 (356)
+|.++.+...
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999976544
No 198
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=124.60 Aligned_cols=80 Identities=29% Similarity=0.465 Sum_probs=74.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 46679999999999999999999999999999999865 799999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy9313 349 THKPLP 354 (356)
Q Consensus 349 ~~~~~~ 354 (356)
+++...
T Consensus 87 ~~~~~~ 92 (99)
T 2cpj_A 87 CHSASL 92 (99)
T ss_dssp SCCSCC
T ss_pred CCCCCC
Confidence 987754
No 199
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=124.73 Aligned_cols=89 Identities=8% Similarity=0.095 Sum_probs=77.2
Q ss_pred CCCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc--e
Q psy9313 15 RSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL--K 92 (356)
Q Consensus 15 ~~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--~ 92 (356)
.+..+.....++++|||+|||..+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.|++. .
T Consensus 4 ~~~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~ 77 (104)
T 1wex_A 4 GSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVY 77 (104)
T ss_dssp SCCCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCB
T ss_pred CCCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCce
Confidence 34455566778999999999999999999999999999999998764 579999999999999999988754 5
Q ss_pred eCCeEEEEEecCCCccc
Q psy9313 93 LQNKSIKVSYARPSSEA 109 (356)
Q Consensus 93 ~~g~~l~v~~~~~~~~~ 109 (356)
+.|+.|.|.++.++...
T Consensus 78 i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 78 IAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp SSSSBCEEEECSSSSCC
T ss_pred ECCEEEEEEEccCcccc
Confidence 99999999999875443
No 200
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.5e-19 Score=122.55 Aligned_cols=76 Identities=26% Similarity=0.440 Sum_probs=73.4
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
++|||+|||+.+++++|+++|++||.|.++.++.++.+|.++|+|||+|.+.++|.+|++.++ ..+.|+.|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 469999999999999999999999999999999999999999999999999999999999999 9999999999997
No 201
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9e-19 Score=130.19 Aligned_cols=86 Identities=21% Similarity=0.407 Sum_probs=80.3
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
......++|||+|||..+++++|+++|+.||.|..|.++.++.++.++|||||+|.+.++|.+|+ .|+|..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 34566789999999999999999999999999999999999988999999999999999999999 99999999999999
Q ss_pred EecCCCc
Q psy9313 101 SYARPSS 107 (356)
Q Consensus 101 ~~~~~~~ 107 (356)
.++.+..
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 9987643
No 202
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-19 Score=131.83 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=77.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.|++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999999999999999999999999999 899999999999999997
Q ss_pred CC
Q psy9313 350 HK 351 (356)
Q Consensus 350 ~~ 351 (356)
.+
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 203
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=129.57 Aligned_cols=88 Identities=17% Similarity=0.272 Sum_probs=80.4
Q ss_pred CCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCc-eeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEV-ESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i-~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
.....+.+.++|||+|||.++++++|+++|+.||.| ..|.++.++ +|.++|||||+|.+.++|.+|+.. ++..|.|+
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr 84 (114)
T 2cpy_A 7 GEGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGR 84 (114)
T ss_dssp CCCSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTE
T ss_pred CCCCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCe
Confidence 344567788999999999999999999999999999 899999998 899999999999999999999965 99999999
Q ss_pred EEEEEecCCCc
Q psy9313 97 SIKVSYARPSS 107 (356)
Q Consensus 97 ~l~v~~~~~~~ 107 (356)
.|.|.++.+..
T Consensus 85 ~i~v~~a~~~~ 95 (114)
T 2cpy_A 85 EAFVHVVTLED 95 (114)
T ss_dssp EEEEEEECHHH
T ss_pred EEEEEECCHHH
Confidence 99999997543
No 204
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=127.33 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=80.7
Q ss_pred CCCCcCCCCceEEEcCCCCCCCHHHHH---HHhhccCCceeEEEEecCCCC---ccceEEEEEecCHHHHHHHHHHhCCc
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMTQEELQ---HLFSSVGEVESCKLIRDKTTA---QSLGYGFVNYYRTEDAERAIIELNGL 91 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~te~~l~---~~f~~~g~i~~i~~~~~~~~~---~~~g~afV~f~~~~~A~~a~~~l~g~ 91 (356)
.........++|||+|||..+++++|+ ++|++||.|.+|.++++..++ .++|||||+|.+.++|.+|++.|||.
T Consensus 7 ~~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 7 GASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CSCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 334455678999999999999999999 999999999999999887654 45699999999999999999999999
Q ss_pred eeCCeEEEEEecCCCc
Q psy9313 92 KLQNKSIKVSYARPSS 107 (356)
Q Consensus 92 ~~~g~~l~v~~~~~~~ 107 (356)
.|.|+.|+|.++.++.
T Consensus 87 ~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 87 VVDGRTLKASLGTTKY 102 (111)
T ss_dssp EETTEEEEEESCCCCS
T ss_pred EECCEEEEEEeccccc
Confidence 9999999999998764
No 205
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=124.40 Aligned_cols=81 Identities=17% Similarity=0.345 Sum_probs=74.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
...++|||+|||+.+|+++|+++|++||. ..|.|+.++ +|+++|||||+|.+.++|.+|++ +|+..|.||.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 45679999999999999999999999995 499999998 89999999999999999999995 7999999999999998
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
....
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 206
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=124.05 Aligned_cols=82 Identities=21% Similarity=0.356 Sum_probs=74.6
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||+.+++++|+++|++||.| .++.+ .++.++|||||+|.+.++|.+|+..|||..|.|+.|+|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3467899999999999999999999999987 56666 5788999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
++++..
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 988764
No 207
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.6e-18 Score=124.50 Aligned_cols=83 Identities=16% Similarity=0.191 Sum_probs=76.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeE-EEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQN-VKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
...++|||+|||+.+++++|+++|++||.|.. |.|+.+ .+|+++|||||+|.+.++|.+|+.. |+..|+||.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 35679999999999999999999999999987 888888 7899999999999999999999997 99999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
+..+..
T Consensus 91 ~~~~~~ 96 (104)
T 1wg5_A 91 SSRAEV 96 (104)
T ss_dssp ECTTTS
T ss_pred CCHHHH
Confidence 987653
No 208
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-18 Score=131.96 Aligned_cols=88 Identities=24% Similarity=0.342 Sum_probs=81.2
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+........+.++|||+|||..+++++|+++|++||.|.++.++.++.++.++|||||+|.+.++|.+|++.|+|..|.|
T Consensus 53 ~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 132 (140)
T 2ku7_A 53 SGGSGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 132 (140)
T ss_dssp SCSSCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT
T ss_pred CCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34445667789999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred eEEEEEec
Q psy9313 96 KSIKVSYA 103 (356)
Q Consensus 96 ~~l~v~~~ 103 (356)
+.|+|.++
T Consensus 133 ~~l~v~~A 140 (140)
T 2ku7_A 133 RTIRVNLA 140 (140)
T ss_dssp EEEEEEC-
T ss_pred EEEEEEeC
Confidence 99999875
No 209
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=127.33 Aligned_cols=81 Identities=27% Similarity=0.361 Sum_probs=75.0
Q ss_pred CCCcEEEEecCCCCC------cHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe-
Q psy9313 269 GSGWCIFVYNLAPET------EDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR- 341 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr- 341 (356)
..+++|||+|||+.+ ++++|+++|++||.|.+|.++ ..+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 356799999999999 789999999999999999988 46789999999999999999999999999999998
Q ss_pred eEEEEEecCC
Q psy9313 342 LLQVSFKTHK 351 (356)
Q Consensus 342 ~l~v~~a~~~ 351 (356)
.|+|.||...
T Consensus 91 ~l~V~~a~~~ 100 (105)
T 2nlw_A 91 TFRVNLFTDF 100 (105)
T ss_dssp EEEEECSCCC
T ss_pred eEEEEEcchH
Confidence 9999999754
No 210
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.9e-18 Score=130.53 Aligned_cols=82 Identities=15% Similarity=0.246 Sum_probs=78.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.|++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3578999999999999999999999999999999999989999999999999999999999 799999999999999998
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 755
No 211
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=134.76 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccC--CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVG--EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g--~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
...++|||+|||.++++++|+++|+.|| .|.+|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy9313 102 YARPS 106 (356)
Q Consensus 102 ~~~~~ 106 (356)
++.+.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99764
No 212
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.7e-18 Score=125.15 Aligned_cols=82 Identities=22% Similarity=0.391 Sum_probs=77.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCccc--------CC
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYAL--------GD 340 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l--------~g 340 (356)
...++|||+|||+.+++++|+++|++||.|.+|.++.++ ++.++|||||+|.+.++|.+|++.|||..| .|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356799999999999999999999999999999999998 899999999999999999999999999999 57
Q ss_pred eeEEEEEecCC
Q psy9313 341 RLLQVSFKTHK 351 (356)
Q Consensus 341 r~l~v~~a~~~ 351 (356)
+.|.|.||.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999854
No 213
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=124.62 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=78.3
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
...+...++|||+|||.++|+++|+++|++||.+ +|.++.++ +++++|||||+|.+.++|.+|+ .+++..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEE
Confidence 4566778999999999999999999999999954 99999997 8999999999999999999999 6899999999999
Q ss_pred EEecCCCcc
Q psy9313 100 VSYARPSSE 108 (356)
Q Consensus 100 v~~~~~~~~ 108 (356)
|.++.+...
T Consensus 86 V~~~~~~~~ 94 (102)
T 1wez_A 86 LFLNSTAGT 94 (102)
T ss_dssp EEEECCCCC
T ss_pred EEECCCCCC
Confidence 999876543
No 214
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=128.93 Aligned_cols=83 Identities=22% Similarity=0.393 Sum_probs=79.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|++. +|..|+|+.|+|.|+.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 457999999999999999999999999999999999999999999999999999999999997 9999999999999999
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
++.-
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 8753
No 215
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.76 E-value=4.9e-18 Score=133.59 Aligned_cols=88 Identities=27% Similarity=0.463 Sum_probs=82.3
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
....++++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34467899999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.|+.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987543
No 216
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-19 Score=125.09 Aligned_cols=82 Identities=29% Similarity=0.404 Sum_probs=77.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
+.++++|||+|||..+++++|+++|++||.|..+.++.++.++.++|||||+|.+.++|.+|++.|||..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 45789999999999999999999999999999999999988999999999999999999999999999999999998877
Q ss_pred cC
Q psy9313 103 AR 104 (356)
Q Consensus 103 ~~ 104 (356)
++
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 217
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.4e-18 Score=125.30 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=71.6
Q ss_pred CCCCcEEEEecCCCC-CcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC--cccCCeeEE
Q psy9313 268 HGSGWCIFVYNLAPE-TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG--YALGDRLLQ 344 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~l~gr~l~ 344 (356)
..++++|||+|||++ +++++|+++|++||.|.+|.++++ +|||||+|++.++|.+|++.|++ ..|.||.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 346889999999998 999999999999999999999754 79999999999999999998864 569999999
Q ss_pred EEEecCCC
Q psy9313 345 VSFKTHKP 352 (356)
Q Consensus 345 v~~a~~~~ 352 (356)
|.||+.+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99998765
No 218
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3e-18 Score=117.06 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
..+..|||+||++.+||++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.++
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 4588999999999999999999999999999999865 5789999999999999999999999999999999977
No 219
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=129.80 Aligned_cols=80 Identities=16% Similarity=0.322 Sum_probs=73.4
Q ss_pred CCcEEEEecCCCCCcHHHHH----HhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLW----QLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
++++|||+|||+.+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|++.|||..|.|+.|+|
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 57799999999999999876 6999999999988754 5788999999999999999999999999999999999
Q ss_pred EEecCCC
Q psy9313 346 SFKTHKP 352 (356)
Q Consensus 346 ~~a~~~~ 352 (356)
.||+.+.
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998764
No 220
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=8.8e-19 Score=133.86 Aligned_cols=93 Identities=25% Similarity=0.386 Sum_probs=85.3
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
...+....++++|||+|||..+++++|+++|++||.|..|.++.++.++.++|||||+|.+.++|.+|+..|+|..|.|+
T Consensus 38 ~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 38 GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34455667789999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred EEEEEecCCCccc
Q psy9313 97 SIKVSYARPSSEA 109 (356)
Q Consensus 97 ~l~v~~~~~~~~~ 109 (356)
.|+|.++++....
T Consensus 118 ~l~V~~a~~~~~~ 130 (135)
T 2lea_A 118 ELRVQMARYGRPP 130 (135)
T ss_dssp CCEEEECCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876544
No 221
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=120.65 Aligned_cols=77 Identities=26% Similarity=0.408 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 367899999999999999999999999999999986 579999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 222
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=125.18 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=79.3
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCcee-EEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVES-CKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~-i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+.........++|||+|||.++++++|+++|++||.|.+ |.++.+ .+|+++|||||+|.+.++|.+|+.. ++..+.|
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g 83 (104)
T 1wg5_A 6 SGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGH 83 (104)
T ss_dssp CCCCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCC
Confidence 334455677899999999999999999999999999987 888887 6899999999999999999999965 9999999
Q ss_pred eEEEEEecCCCc
Q psy9313 96 KSIKVSYARPSS 107 (356)
Q Consensus 96 ~~l~v~~~~~~~ 107 (356)
+.|+|.++.+..
T Consensus 84 r~i~v~~~~~~~ 95 (104)
T 1wg5_A 84 RYIEIFKSSRAE 95 (104)
T ss_dssp SCCEEEEECTTT
T ss_pred cEEEEEECCHHH
Confidence 999999987653
No 223
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=132.64 Aligned_cols=81 Identities=31% Similarity=0.477 Sum_probs=77.0
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||..+++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.|
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred e
Q psy9313 348 K 348 (356)
Q Consensus 348 a 348 (356)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 6
No 224
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=129.30 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=77.3
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCce-eEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAV-QNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
..+.++|||+|||+.+++++|+++|++||.| ..|.|+.++ +|+++|||||+|.+.++|.+|+.. ||..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3466899999999999999999999999999 899999998 899999999999999999999996 9999999999999
Q ss_pred EecCCC
Q psy9313 347 FKTHKP 352 (356)
Q Consensus 347 ~a~~~~ 352 (356)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 998643
No 225
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=1.1e-18 Score=127.61 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=71.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
..++|||+|||+.+++++|+++|++|| .|..+.++.+ .++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 567999999999999999999999999 8999988643 46899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+.+++
T Consensus 103 ~~~p~ 107 (111)
T 2jvr_A 103 DNPPP 107 (111)
T ss_dssp CC---
T ss_pred CCCCC
Confidence 87653
No 226
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.4e-18 Score=123.07 Aligned_cols=89 Identities=21% Similarity=0.404 Sum_probs=78.3
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
......+.++++|||+|||..+++++|+++|++||.| .++.+ .++..+|||||+|.+.++|.+|+..|+|..|.|+
T Consensus 6 s~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 6 SGNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp CCCCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 3444567789999999999999999999999999976 45565 5789999999999999999999999999999999
Q ss_pred EEEEEecCCCccc
Q psy9313 97 SIKVSYARPSSEA 109 (356)
Q Consensus 97 ~l~v~~~~~~~~~ 109 (356)
.|+|.++.+....
T Consensus 82 ~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 82 AIRLELQGPRGSP 94 (101)
T ss_dssp EEEEEECSSCCCC
T ss_pred EEEEEEcCCCCCC
Confidence 9999999876543
No 227
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=125.08 Aligned_cols=86 Identities=26% Similarity=0.496 Sum_probs=79.2
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
........++|||+|||..+++++|+++|++||.|.+|.++.+. +.++|||||+|.+.++|.+|+..|+|..+.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556788999999999999999999999999999999999885 4588999999999999999999999999999999
Q ss_pred EEEecCCC
Q psy9313 99 KVSYARPS 106 (356)
Q Consensus 99 ~v~~~~~~ 106 (356)
+|.++.++
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999865
No 228
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.1e-18 Score=125.01 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=75.0
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCC--ceeCCeE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNG--LKLQNKS 97 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g--~~~~g~~ 97 (356)
.....++++|||+|||.++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++.+++ ..|.|+.
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~ 98 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQP 98 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeE
Confidence 345667899999999999999999999999999999999875 57999999999999999998874 6799999
Q ss_pred EEEEecCCCccc
Q psy9313 98 IKVSYARPSSEA 109 (356)
Q Consensus 98 l~v~~~~~~~~~ 109 (356)
|.|.++++....
T Consensus 99 l~V~~a~~k~~~ 110 (119)
T 2ad9_A 99 IYIQFSNHKELK 110 (119)
T ss_dssp CEEEECSSSSCC
T ss_pred EEEEEccCCCCC
Confidence 999999876443
No 229
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=122.15 Aligned_cols=79 Identities=28% Similarity=0.495 Sum_probs=73.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC--CeeEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG--DRLLQVS 346 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~--gr~l~v~ 346 (356)
.+.++|||+|||+.+++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.|||..+. |+.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 35678999999999999999999999999999998764 789999999999999999999999999 9999999
Q ss_pred EecCCCC
Q psy9313 347 FKTHKPL 353 (356)
Q Consensus 347 ~a~~~~~ 353 (356)
|+++++.
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9998764
No 230
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-17 Score=122.77 Aligned_cols=87 Identities=16% Similarity=0.390 Sum_probs=78.3
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.....+.++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345667899999999999999999999999999999998553 55789999999999999999999999999999999
Q ss_pred EEecCCCccc
Q psy9313 100 VSYARPSSEA 109 (356)
Q Consensus 100 v~~~~~~~~~ 109 (356)
|.++++....
T Consensus 93 V~~a~~~~~~ 102 (109)
T 1x4a_A 93 VEFPRSGRGT 102 (109)
T ss_dssp EECCCCCCCC
T ss_pred EEEcccCCCC
Confidence 9999876543
No 231
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.76 E-value=1.2e-18 Score=119.25 Aligned_cols=75 Identities=27% Similarity=0.456 Sum_probs=71.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 28 ~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
+|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++ ++|..+.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999998889999999999999999999995 9999999999999875
No 232
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=3.8e-18 Score=127.25 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=75.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCc---eeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGA---VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
...++|||+|||+.+|+++|+++|++||. |..|+|+.++. |+++|||||+|.+.++|.+|++ |||..|+||.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 35679999999999999999999999998 89999999987 8999999999999999999999 9999999999999
Q ss_pred EEecC
Q psy9313 346 SFKTH 350 (356)
Q Consensus 346 ~~a~~ 350 (356)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99864
No 233
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.9e-18 Score=123.21 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=72.0
Q ss_pred cCCCCceEEEcCCCC-CCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc--eeCCeEE
Q psy9313 22 VNEQNSNLIVNYVPQ-TMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL--KLQNKSI 98 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~-~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~--~~~g~~l 98 (356)
...++++|||+|||. .+++++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++.|++. .|.|+.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k------g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI------NEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS------SCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC------CEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345789999999999 99999999999999999999998753 69999999999999999988864 5999999
Q ss_pred EEEecCCCc
Q psy9313 99 KVSYARPSS 107 (356)
Q Consensus 99 ~v~~~~~~~ 107 (356)
.|.++++..
T Consensus 85 ~V~~a~~~~ 93 (102)
T 1x4d_A 85 RVHLSQKYK 93 (102)
T ss_dssp EEEEECCCT
T ss_pred EEEECCCCC
Confidence 999998643
No 234
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=9.2e-18 Score=122.11 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=76.4
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..+.++|||+|||+.+++++|+++|+.|+ .+.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34677899999999999999999999874 678888988999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
|+++..
T Consensus 89 a~~~~~ 94 (102)
T 2fc8_A 89 AKPKGE 94 (102)
T ss_dssp CCCCCS
T ss_pred ecCCCC
Confidence 998764
No 235
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=124.53 Aligned_cols=86 Identities=27% Similarity=0.507 Sum_probs=79.6
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCcee------
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL------ 93 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~------ 93 (356)
.....+.++|||+|||..+++++|+++|+.||.|..|.++.++ ++.++|||||+|.+.++|.+|+..|||..|
T Consensus 19 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 19 KQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp SCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTS
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccc
Confidence 3455678999999999999999999999999999999999998 899999999999999999999999999999
Q ss_pred --CCeEEEEEecCCC
Q psy9313 94 --QNKSIKVSYARPS 106 (356)
Q Consensus 94 --~g~~l~v~~~~~~ 106 (356)
.++.|.|.|+.|+
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999999865
No 236
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=128.17 Aligned_cols=86 Identities=15% Similarity=0.307 Sum_probs=76.8
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHH----HHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQ----HLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~----~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
....++++|||+|||..+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|..|+..|||..|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 445678999999999999999876 6999999999987753 578899999999999999999999999999999
Q ss_pred EEEEEecCCCccc
Q psy9313 97 SIKVSYARPSSEA 109 (356)
Q Consensus 97 ~l~v~~~~~~~~~ 109 (356)
.|+|.|+++....
T Consensus 101 ~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 101 PLVITFSETPQSQ 113 (127)
T ss_dssp CCEEEECCCCCHH
T ss_pred EEEEEEccCcchh
Confidence 9999999876543
No 237
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=4.5e-18 Score=154.96 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=80.1
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
..+.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8754
No 238
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=119.51 Aligned_cols=76 Identities=28% Similarity=0.526 Sum_probs=72.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999998889999999999999999999998888 9999999999986
No 239
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=8e-18 Score=121.66 Aligned_cols=87 Identities=30% Similarity=0.475 Sum_probs=77.9
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+........++++|||+|||..+++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|++.|+|..|.|
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 5 SSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp SSCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3444456678899999999999999999999999999999998754 5799999999999999999999999999
Q ss_pred eEEEEEecCCCcc
Q psy9313 96 KSIKVSYARPSSE 108 (356)
Q Consensus 96 ~~l~v~~~~~~~~ 108 (356)
+.|+|.++.++..
T Consensus 79 ~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 79 KQLRVRFACHSAS 91 (99)
T ss_dssp BCCEEEESSCCSC
T ss_pred ceEEEEEcCCCCC
Confidence 9999999987543
No 240
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=1.8e-18 Score=130.70 Aligned_cols=86 Identities=20% Similarity=0.384 Sum_probs=80.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
..+.++|||+|||.++++++|+++|++||.|.+|.++.++.+|.++|||||+|.+.++|.+|+ .|+|..|.|+.|+|.+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 445799999999999999999999999999999999999889999999999999999999999 8999999999999999
Q ss_pred cCCCccc
Q psy9313 103 ARPSSEA 109 (356)
Q Consensus 103 ~~~~~~~ 109 (356)
+++....
T Consensus 112 a~~~~~~ 118 (124)
T 2jwn_A 112 KRTNMPG 118 (124)
T ss_dssp SSCCCSS
T ss_pred CCCCCCC
Confidence 9865443
No 241
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=7.6e-18 Score=133.63 Aligned_cols=89 Identities=25% Similarity=0.365 Sum_probs=81.4
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
+....++++|||+|||..+++++|+++|++||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456788999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEecCCCcc
Q psy9313 100 VSYARPSSE 108 (356)
Q Consensus 100 v~~~~~~~~ 108 (356)
|.|+.+...
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999976543
No 242
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=8.3e-18 Score=125.40 Aligned_cols=84 Identities=15% Similarity=0.218 Sum_probs=77.7
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCC---ceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGE---VESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~---i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
......++|||+|||.++|+++|+++|+.||. |..|.++.++. |+++|||||+|.+.++|.+|+. +++..|.|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 44567899999999999999999999999998 89999999976 9999999999999999999997 9999999999
Q ss_pred EEEEecCCC
Q psy9313 98 IKVSYARPS 106 (356)
Q Consensus 98 l~v~~~~~~ 106 (356)
|+|.++.+.
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999988643
No 243
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=9.7e-19 Score=126.63 Aligned_cols=86 Identities=19% Similarity=0.372 Sum_probs=75.5
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecC-CCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK-TTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
.......++|||+|||.++++++|+++|++|| |.+|.++.++ .+|.++|||||+|.+.++|.+|+ .|+|..|.|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34567789999999999999999999999999 9999999987 58999999999999999999999 999999999999
Q ss_pred EEEecCCCc
Q psy9313 99 KVSYARPSS 107 (356)
Q Consensus 99 ~v~~~~~~~ 107 (356)
+|.++.+..
T Consensus 91 ~V~~a~~~~ 99 (100)
T 2j76_E 91 RVDVADQAQ 99 (100)
T ss_dssp CCEECCCSC
T ss_pred EEEeccCCC
Confidence 999998753
No 244
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=121.26 Aligned_cols=89 Identities=22% Similarity=0.444 Sum_probs=79.7
Q ss_pred CCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
.......++++|||+|||..+++++|+++|+.| ..|.++.++.++.++|||||+|.+.++|.+|++.|+|..|.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 334556789999999999999999999999977 36788888888999999999999999999999999999999999
Q ss_pred EEEEecCCCccc
Q psy9313 98 IKVSYARPSSEA 109 (356)
Q Consensus 98 l~v~~~~~~~~~ 109 (356)
|+|.+++++...
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2fc8_A 84 VTLDWAKPKGEG 95 (102)
T ss_dssp CEEEECCCCCSS
T ss_pred EEEEEecCCCCC
Confidence 999999876543
No 245
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=124.37 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=73.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|+|+|||+.+++++|+++|++| .|.+|.|+.++. |+++|||||+|.+.++|.+|+ .+||..|+||.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45789999999999999999999999 899999999976 899999999999999999999 599999999999998886
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 246
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-19 Score=129.15 Aligned_cols=84 Identities=18% Similarity=0.203 Sum_probs=77.2
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |||..|.|+.|.|.|+
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 36789999999999999999999999999988 677777788999999999999999999999 9999999999999999
Q ss_pred cCCCCC
Q psy9313 349 THKPLP 354 (356)
Q Consensus 349 ~~~~~~ 354 (356)
+++...
T Consensus 93 ~~~~~~ 98 (101)
T 1fj7_A 93 KGRDGT 98 (101)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 987643
No 247
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=129.54 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=76.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
...++|||+|||+.+++++|+++|++||.|..+.++.+..+|+++|||||+|.+.++|.+|+. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 466899999999999999999999999999987777777789999999999999999999999 9999999999999999
Q ss_pred cCC
Q psy9313 349 THK 351 (356)
Q Consensus 349 ~~~ 351 (356)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 248
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=121.01 Aligned_cols=73 Identities=27% Similarity=0.382 Sum_probs=67.9
Q ss_pred CcEEEEecCCCCC------cHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe-eE
Q psy9313 271 GWCIFVYNLAPET------EDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR-LL 343 (356)
Q Consensus 271 ~~~l~V~nlp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr-~l 343 (356)
+++|||+|||+.+ ++++|+++|++||.|.++.++ +.+|.++|||||+|.+.++|.+|++.|||..|.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 789999999999999999987 45789999999999999999999999999999999 88
Q ss_pred EE
Q psy9313 344 QV 345 (356)
Q Consensus 344 ~v 345 (356)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 249
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=4.2e-18 Score=124.35 Aligned_cols=84 Identities=19% Similarity=0.392 Sum_probs=76.4
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.......++|||+|||.++++++|+++|+.| .|.+|.++.++. |+++|||||+|.+.++|.+|+ .+|+..|.|+.|.
T Consensus 10 ~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~ 86 (109)
T 2dnn_A 10 LPINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVE 86 (109)
T ss_dssp CCCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEE
Confidence 3445567899999999999999999999999 899999999875 999999999999999999999 7999999999999
Q ss_pred EEecCCC
Q psy9313 100 VSYARPS 106 (356)
Q Consensus 100 v~~~~~~ 106 (356)
|..+.+.
T Consensus 87 V~~a~~~ 93 (109)
T 2dnn_A 87 VSPATER 93 (109)
T ss_dssp EEECCHH
T ss_pred EEECCcc
Confidence 9888653
No 250
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=3.1e-18 Score=130.11 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=75.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCc---eeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGA---VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
..++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+|++ |||..|+||.|.|.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 5679999999999999999999999999 89999999987 9999999999999999999999 99999999999999
Q ss_pred EecC
Q psy9313 347 FKTH 350 (356)
Q Consensus 347 ~a~~ 350 (356)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 9864
No 251
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=129.57 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=77.7
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
......++|||+|||.++++++|+++|+.||.|.++.++.+..+|.++|||||+|.+.++|.+|+. +||..|.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 98 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQV 98 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEE
Confidence 445677999999999999999999999999999986677777789999999999999999999997 9999999999999
Q ss_pred EecCCC
Q psy9313 101 SYARPS 106 (356)
Q Consensus 101 ~~~~~~ 106 (356)
.++.+.
T Consensus 99 ~~a~~~ 104 (124)
T 1wel_A 99 HPITKK 104 (124)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998754
No 252
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=4.8e-18 Score=129.04 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=78.6
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCC---ceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGE---VESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~---i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
.......++|||+|||.++|+++|+++|+.||. |.+|.++.++. |+++|||||+|.+.++|.+|++ +++..|.|+
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 345677899999999999999999999999999 89999999986 9999999999999999999997 999999999
Q ss_pred EEEEEecCCC
Q psy9313 97 SIKVSYARPS 106 (356)
Q Consensus 97 ~l~v~~~~~~ 106 (356)
.|+|.++.+.
T Consensus 116 ~i~V~~a~~~ 125 (136)
T 2hgl_A 116 YIEVFKSHRT 125 (136)
T ss_dssp EEEEEECCHH
T ss_pred EEEEEECChH
Confidence 9999988643
No 253
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.1e-17 Score=120.36 Aligned_cols=82 Identities=15% Similarity=0.355 Sum_probs=75.0
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeC--CeE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQ--NKS 97 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~--g~~ 97 (356)
.....++++|||+|||..+++++|+++|++||.|.+|.+..+ +|||||+|.+.++|.+|++.|||..+. |+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 445677899999999999999999999999999999988754 579999999999999999999999999 999
Q ss_pred EEEEecCCCc
Q psy9313 98 IKVSYARPSS 107 (356)
Q Consensus 98 l~v~~~~~~~ 107 (356)
|+|.+++++.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998754
No 254
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=121.37 Aligned_cols=83 Identities=24% Similarity=0.416 Sum_probs=75.9
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC---
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN--- 95 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g--- 95 (356)
.+......++|||+|||.++++++|+++|++||.|..|.++.+ |||||+|.+.++|.+|++.|||..|.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~ 80 (108)
T 1x4c_A 8 GPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEG 80 (108)
T ss_dssp SCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcC
Confidence 3445677899999999999999999999999999999999876 699999999999999999999999999
Q ss_pred --eEEEEEecCCCcc
Q psy9313 96 --KSIKVSYARPSSE 108 (356)
Q Consensus 96 --~~l~v~~~~~~~~ 108 (356)
+.|+|.++.+...
T Consensus 81 ~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 81 ETAYIRVKVDGPRSP 95 (108)
T ss_dssp CEEEEEEEESSCCSC
T ss_pred cceEEEEEeCCCCCC
Confidence 9999999987654
No 255
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=123.00 Aligned_cols=83 Identities=22% Similarity=0.382 Sum_probs=75.9
Q ss_pred cCCCCceEEEcCCCCCC------CHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 22 VNEQNSNLIVNYVPQTM------TQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~------te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
....+++|||+|||..+ ++++|+++|++||.|.+|.++ +.+|.++|||||+|.+.++|.+|+..|||..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 44557899999999999 789999999999999999988 3578999999999999999999999999999999
Q ss_pred e-EEEEEecCCC
Q psy9313 96 K-SIKVSYARPS 106 (356)
Q Consensus 96 ~-~l~v~~~~~~ 106 (356)
+ .|+|.++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999998753
No 256
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.4e-18 Score=129.34 Aligned_cols=85 Identities=24% Similarity=0.366 Sum_probs=74.0
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.++++|||+|||+.+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|++.|||..|.|+.|+|.||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 46789999999999999999999999999843333222226788999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 103 ~~~~~ 107 (115)
T 2cpx_A 103 KNKKQ 107 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 97764
No 257
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=118.37 Aligned_cols=80 Identities=31% Similarity=0.503 Sum_probs=74.0
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
.+.+.++|||+|||.++++++|+++|++||.|.++.++ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999987 4699999999999999999999999999999999
Q ss_pred ecCCCccc
Q psy9313 102 YARPSSEA 109 (356)
Q Consensus 102 ~~~~~~~~ 109 (356)
++.+....
T Consensus 76 ~a~~~~~~ 83 (90)
T 2dnq_A 76 ASKNKSKA 83 (90)
T ss_dssp CSSCCCCC
T ss_pred ECCCCCCC
Confidence 99876544
No 258
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.7e-18 Score=125.25 Aligned_cols=87 Identities=23% Similarity=0.354 Sum_probs=79.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCC-ceeEEEE-ecCCCCccceEEEEEecCHHHHHHHHHHhC--CceeCCeEE
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGE-VESCKLI-RDKTTAQSLGYGFVNYYRTEDAERAIIELN--GLKLQNKSI 98 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~-i~~i~~~-~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~l 98 (356)
..+.++|||+|||..+++++|+++|.+||. |.++.++ .++.+|.++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346899999999999999999999999998 9999998 787788999999999999999999999896 589999999
Q ss_pred EEEecCCCccc
Q psy9313 99 KVSYARPSSEA 109 (356)
Q Consensus 99 ~v~~~~~~~~~ 109 (356)
+|.|+.+....
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 259
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.3e-18 Score=118.27 Aligned_cols=75 Identities=20% Similarity=0.293 Sum_probs=70.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHh-CCcccCCeeEEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL-NGYALGDRLLQVSF 347 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~l~gr~l~v~~ 347 (356)
.+.++|||+|||..+++++|+++|++||.|.++.++++ +|+|||+|.+.++|.+|++.| +|..+.|+.|+|.|
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 35678999999999999999999999999999999875 799999999999999999999 99999999999999
Q ss_pred ec
Q psy9313 348 KT 349 (356)
Q Consensus 348 a~ 349 (356)
|+
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 260
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=6.5e-18 Score=123.81 Aligned_cols=78 Identities=27% Similarity=0.506 Sum_probs=72.3
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.++++|||+|||+.+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|++.|||..+.|+.|.|.|+
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 467899999999999999999999999999999987 689999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy9313 349 THKPLP 354 (356)
Q Consensus 349 ~~~~~~ 354 (356)
+.++..
T Consensus 101 ~~~~~r 106 (108)
T 2jvo_A 101 KLPAKR 106 (108)
T ss_dssp SCCC--
T ss_pred cCCCCC
Confidence 987653
No 261
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=1e-18 Score=124.06 Aligned_cols=81 Identities=31% Similarity=0.519 Sum_probs=74.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecCCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS 106 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~~~ 106 (356)
++|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.+ |.+|+..|||..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999888999999999999999 99999999999999999999999875
Q ss_pred cc
Q psy9313 107 SE 108 (356)
Q Consensus 107 ~~ 108 (356)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 262
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=121.50 Aligned_cols=77 Identities=21% Similarity=0.263 Sum_probs=72.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC-----eeEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD-----RLLQ 344 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g-----r~l~ 344 (356)
..++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|++.|||..|.| +.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 5779999999999999999999999999999999876 799999999999999999999999999 9999
Q ss_pred EEEecCCCC
Q psy9313 345 VSFKTHKPL 353 (356)
Q Consensus 345 v~~a~~~~~ 353 (356)
|.+|+++..
T Consensus 87 V~~a~~~~~ 95 (108)
T 1x4c_A 87 VKVDGPRSP 95 (108)
T ss_dssp EEESSCCSC
T ss_pred EEeCCCCCC
Confidence 999998764
No 263
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.74 E-value=1.4e-17 Score=119.60 Aligned_cols=76 Identities=18% Similarity=0.317 Sum_probs=71.2
Q ss_pred CCCcEEEEecCCC-CCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 269 GSGWCIFVYNLAP-ETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 269 ~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
.++++|||+|||+ .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|||..+.|+.|+|.|
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3678999999998 99999999999999999999982 78999999999999999999999999999999999
Q ss_pred ecCCC
Q psy9313 348 KTHKP 352 (356)
Q Consensus 348 a~~~~ 352 (356)
++.+.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 264
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=124.61 Aligned_cols=77 Identities=19% Similarity=0.094 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|||..|.|+.|.|.||+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG------GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS------SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4568999999999999999999999999999998753 7899999999999999999999999999999999998
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
...
T Consensus 83 ~~~ 85 (111)
T 1whx_A 83 IGV 85 (111)
T ss_dssp TTT
T ss_pred CCc
Confidence 754
No 265
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=1.4e-17 Score=122.03 Aligned_cols=85 Identities=25% Similarity=0.501 Sum_probs=73.2
Q ss_pred CCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 16 ~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
.........++++|||+|||..+++++|+++|++||.|.+|.++ +|||||+|.+.++|.+|+..|+|..+.|
T Consensus 21 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 21 MHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp -------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred cccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34445667889999999999999999999999999999999987 4799999999999999999999999999
Q ss_pred eEEEEEecCCCcc
Q psy9313 96 KSIKVSYARPSSE 108 (356)
Q Consensus 96 ~~l~v~~~~~~~~ 108 (356)
+.|.|.++++...
T Consensus 93 ~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 93 QPLEVVYSKLPAK 105 (108)
T ss_dssp EECEEESCSCCC-
T ss_pred eEEEEEEecCCCC
Confidence 9999999987543
No 266
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1e-17 Score=120.60 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=72.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
...++|||+|||+.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3567999999999999999999999999996 666654 56899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 92 ~~~~~ 96 (97)
T 2e5j_A 92 RQQRD 96 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 88753
No 267
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-17 Score=116.96 Aligned_cols=82 Identities=28% Similarity=0.467 Sum_probs=74.8
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.....++++|||+|||..+++++|+++|++||.|.+|.+++ +||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34567789999999999999999999999999999999874 3999999999999999999999999999999
Q ss_pred EEecCCCccc
Q psy9313 100 VSYARPSSEA 109 (356)
Q Consensus 100 v~~~~~~~~~ 109 (356)
|.++.+....
T Consensus 76 V~~a~~~~~~ 85 (92)
T 2dgt_A 76 VQLSTSRLRT 85 (92)
T ss_dssp EEESSCCCSC
T ss_pred EEEccCCCCC
Confidence 9999876543
No 268
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.2e-17 Score=117.60 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=71.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.+++ +||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3678999999999999999999999999999999864 49999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 80 ~~~~~ 84 (92)
T 2dgt_A 80 TSRLR 84 (92)
T ss_dssp SCCCS
T ss_pred cCCCC
Confidence 98764
No 269
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.6e-18 Score=123.75 Aligned_cols=78 Identities=24% Similarity=0.514 Sum_probs=74.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 5679999999999999999999999999999999886 7899999999999999999999999999999999999
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
+++.
T Consensus 98 ~~~~ 101 (109)
T 1x4g_A 98 ESPD 101 (109)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 270
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=3.4e-18 Score=123.21 Aligned_cols=80 Identities=23% Similarity=0.488 Sum_probs=74.9
Q ss_pred CCcEEEEecCCCCCcHHHHH----HhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLW----QLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
++++|||+|||+.+++++|+ ++|++||.|..|.++. +|.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 66799999999999999999 9999999999999874 4678999999999999999999999999999999999
Q ss_pred EEecCCC
Q psy9313 346 SFKTHKP 352 (356)
Q Consensus 346 ~~a~~~~ 352 (356)
.|++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9999865
No 271
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1e-17 Score=124.67 Aligned_cols=78 Identities=21% Similarity=0.500 Sum_probs=73.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
++++|||+|||+.+++++|+++|++||.|.+|.++.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 56799999999999999999999999999999999764 559999999999999999999999999999999999998
Q ss_pred C
Q psy9313 350 H 350 (356)
Q Consensus 350 ~ 350 (356)
+
T Consensus 84 ~ 84 (115)
T 3lqv_A 84 A 84 (115)
T ss_dssp H
T ss_pred C
Confidence 5
No 272
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.4e-18 Score=125.82 Aligned_cols=89 Identities=21% Similarity=0.305 Sum_probs=76.7
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
....++++|||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|+..|+|..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 44567899999999999999999999999999854433333337889999999999999999999999999999999999
Q ss_pred EecCCCccc
Q psy9313 101 SYARPSSEA 109 (356)
Q Consensus 101 ~~~~~~~~~ 109 (356)
.++.+....
T Consensus 100 ~~a~~~~~~ 108 (115)
T 2cpx_A 100 EFGKNKKQR 108 (115)
T ss_dssp EECCCCSCC
T ss_pred EEccCCCCC
Confidence 999876543
No 273
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=116.22 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=73.1
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHh-CCceeCCeE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL-NGLKLQNKS 97 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~g~~~~g~~ 97 (356)
.+..+.+.++|||+|||..+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|+..| +|..+.|+.
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 3445677899999999999999999999999999999999864 579999999999999999888 999999999
Q ss_pred EEEEecC
Q psy9313 98 IKVSYAR 104 (356)
Q Consensus 98 l~v~~~~ 104 (356)
|+|.|++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999974
No 274
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=125.44 Aligned_cols=80 Identities=13% Similarity=0.125 Sum_probs=75.6
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCc---eeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGA---VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
...++|||+|||+.+|+++|+++|+.||. |..|.|+.++. |+++|||||+|.+.++|.+|+. +||..|+||.|.|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 36779999999999999999999999998 89999999987 9999999999999999999999 9999999999999
Q ss_pred EEecC
Q psy9313 346 SFKTH 350 (356)
Q Consensus 346 ~~a~~ 350 (356)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99875
No 275
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.1e-18 Score=122.78 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=71.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
.+++|||+|||..+++++|+++|++||.|.++.+++ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.||+
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 457999999999999999999999999999999974 38999999999999999999999999999999999998
Q ss_pred CC
Q psy9313 350 HK 351 (356)
Q Consensus 350 ~~ 351 (356)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 276
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=1.2e-17 Score=122.24 Aligned_cols=81 Identities=15% Similarity=0.203 Sum_probs=72.7
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
.+...++|||+|||.++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|.+|++.|||..|.|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 456789999999999999999999999999 899998753 247899999999999999999999999999999999
Q ss_pred EecCCC
Q psy9313 101 SYARPS 106 (356)
Q Consensus 101 ~~~~~~ 106 (356)
.++...
T Consensus 100 ~~a~~~ 105 (111)
T 2jvr_A 100 ERDDNP 105 (111)
T ss_dssp EESCC-
T ss_pred EECCCC
Confidence 998754
No 277
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=123.16 Aligned_cols=83 Identities=20% Similarity=0.464 Sum_probs=76.3
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
......++|||+|||..+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|+..|+|..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 35667899999999999999999999999999999999876 579999999999999999999999999999999
Q ss_pred EecCCCccc
Q psy9313 101 SYARPSSEA 109 (356)
Q Consensus 101 ~~~~~~~~~ 109 (356)
.|+++....
T Consensus 94 ~~a~~~~~~ 102 (109)
T 1x4g_A 94 YWGKESPDM 102 (109)
T ss_dssp ECCCCCCSS
T ss_pred EecCCCCCC
Confidence 999876543
No 278
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-18 Score=125.05 Aligned_cols=86 Identities=22% Similarity=0.316 Sum_probs=77.5
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
....+.++|||+|||.++++++|+++|++||.|.. .++.+..+|.++|||||+|.+.++|.+|++ |+|..|.|+.|+|
T Consensus 12 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V 89 (101)
T 1fj7_A 12 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 89 (101)
T ss_dssp TTCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEE
Confidence 34557899999999999999999999999999888 666776778999999999999999999997 9999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.++.+...
T Consensus 90 ~~a~~~~~ 97 (101)
T 1fj7_A 90 EKPKGRDG 97 (101)
T ss_dssp ECCSCCCC
T ss_pred EEcCCCCC
Confidence 99987543
No 279
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=118.46 Aligned_cols=82 Identities=21% Similarity=0.385 Sum_probs=73.4
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
.....+++|||+|||..+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456689999999999999999999999999997 566543 56789999999999999999999999999999999
Q ss_pred EecCCCc
Q psy9313 101 SYARPSS 107 (356)
Q Consensus 101 ~~~~~~~ 107 (356)
.++.+..
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998754
No 280
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=9.7e-18 Score=134.03 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=80.8
Q ss_pred CCCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 267 LHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 267 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
...++++|||+|||+.+++++|+++|++||.|..|.++.++ ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34578899999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EecCCCC
Q psy9313 347 FKTHKPL 353 (356)
Q Consensus 347 ~a~~~~~ 353 (356)
||.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9987654
No 281
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.73 E-value=1.3e-18 Score=119.03 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=71.9
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
+|||+|||+.+++++|+++|++||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 48999999999999999999999999999999999999999999999999999999999 5999999999999986
No 282
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.8e-17 Score=117.08 Aligned_cols=85 Identities=29% Similarity=0.437 Sum_probs=75.3
Q ss_pred CCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhcc--CCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeC
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSV--GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQ 94 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~--g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 94 (356)
..+.....++++|||+|||..+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..|||..|.
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (99)
T 2cpd_A 6 SGDEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLD 77 (99)
T ss_dssp CCCCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEET
T ss_pred cccccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3444556778999999999999999999999999 889988764 469999999999999999999999999
Q ss_pred CeEEEEEecCCCccc
Q psy9313 95 NKSIKVSYARPSSEA 109 (356)
Q Consensus 95 g~~l~v~~~~~~~~~ 109 (356)
|+.|+|.++++....
T Consensus 78 g~~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 78 GSPIEVTLAKPVDKD 92 (99)
T ss_dssp TEEEEEECCCCCCCC
T ss_pred CcEEEEEECCCCCCC
Confidence 999999999876543
No 283
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=120.32 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=72.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.|+.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 56899999999999999999999999988766 3467889999999999999999999999999999999999998
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7764
No 284
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=8.8e-18 Score=140.06 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=76.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCC--ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFG--AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..++|||+|||+.+|+++|+++|++|| .|.+|+|+.++.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy9313 348 KTH 350 (356)
Q Consensus 348 a~~ 350 (356)
|+.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 285
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1e-17 Score=122.09 Aligned_cols=79 Identities=16% Similarity=0.261 Sum_probs=71.9
Q ss_pred cEEEEecC----CCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEcc----HHH----HHHHHH--HhCCcc
Q psy9313 272 WCIFVYNL----APETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTN----YDE----AVFAIQ--SLNGYA 337 (356)
Q Consensus 272 ~~l~V~nl----p~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~----~~~----A~~a~~--~l~g~~ 337 (356)
+.|+|+|| |+.+++++|+++|+.||.|.+|.++.|+.||.++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 46999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred cCCeeEEEEEecC
Q psy9313 338 LGDRLLQVSFKTH 350 (356)
Q Consensus 338 l~gr~l~v~~a~~ 350 (356)
|+||.|+|.+-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998664
No 286
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-17 Score=119.33 Aligned_cols=77 Identities=19% Similarity=0.348 Sum_probs=71.5
Q ss_pred CCcEEEEecCCC-CCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 270 SGWCIFVYNLAP-ETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 270 ~~~~l~V~nlp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
++++|||+|||+ .+++++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.|+
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 677999999998 99999999999999999999983 689999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy9313 349 THKPLP 354 (356)
Q Consensus 349 ~~~~~~ 354 (356)
+++..+
T Consensus 81 ~~~~~~ 86 (96)
T 2kvi_A 81 SSNARP 86 (96)
T ss_dssp ECCCC-
T ss_pred CcCCCC
Confidence 876643
No 287
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=4.2e-17 Score=117.08 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=71.6
Q ss_pred CCCCCcCCCCceEEEcCCCC-CCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 17 TYQSDVNEQNSNLIVNYVPQ-TMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 17 ~~~~~~~~~~~~l~v~nlp~-~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
........++++|||+|||. .+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..|+|..+.|
T Consensus 13 ~~~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 13 GLVPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp ------CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ccccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34445677899999999998 99999999999999999999883 5799999999999999999999999999
Q ss_pred eEEEEEecCCC
Q psy9313 96 KSIKVSYARPS 106 (356)
Q Consensus 96 ~~l~v~~~~~~ 106 (356)
+.|+|.++++.
T Consensus 85 ~~l~V~~a~~~ 95 (97)
T 2xnq_A 85 KKLILEVSSSN 95 (97)
T ss_dssp EECEEEECCCC
T ss_pred EEEEEEecCCC
Confidence 99999999864
No 288
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=1.1e-17 Score=120.56 Aligned_cols=85 Identities=21% Similarity=0.454 Sum_probs=76.5
Q ss_pred cCCCCceEEEcCCCCCCCHHHHH----HHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQ----HLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~----~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
...++++|||+|||..+++++|+ ++|++||.|.+|.+.+ +|.++|||||+|.+.++|.+|+..|+|..+.|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 35678999999999999999999 9999999999998863 4778899999999999999999999999999999
Q ss_pred EEEEecCCCccc
Q psy9313 98 IKVSYARPSSEA 109 (356)
Q Consensus 98 l~v~~~~~~~~~ 109 (356)
|+|.++.+....
T Consensus 81 l~v~~a~~~~~~ 92 (97)
T 1nu4_A 81 MRIQYAKTDSDI 92 (97)
T ss_dssp CEEEECSSCCTH
T ss_pred EEEEEccCCCcc
Confidence 999999886543
No 289
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=6.4e-18 Score=122.68 Aligned_cols=76 Identities=25% Similarity=0.396 Sum_probs=72.3
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecCC
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~~ 351 (356)
++|||+|||+.+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|++.|||..+.|+.|+|.|++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999887 5899999999999999999999999999999999999876
Q ss_pred C
Q psy9313 352 P 352 (356)
Q Consensus 352 ~ 352 (356)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 290
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=117.12 Aligned_cols=77 Identities=31% Similarity=0.468 Sum_probs=71.5
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+.++|||+|||+.+++++|+++|++||.|..|.+++ +||||+|.+.++|.+|++.|||..+.|+.|+|.|+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 3567899999999999999999999999999999874 38999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
+++..
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 97754
No 291
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.72 E-value=4.6e-18 Score=116.23 Aligned_cols=75 Identities=20% Similarity=0.343 Sum_probs=71.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 28 ~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
+|||+|||.++++++|+++|++||.|.++.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999998889999999999999999999995 6999999999999875
No 292
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=6.9e-17 Score=116.67 Aligned_cols=77 Identities=29% Similarity=0.439 Sum_probs=71.2
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCC--CceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPF--GAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
.+.++|||+|||+.+++++|+++|++| |.|..+.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 367899999999999999999999999 899988763 5799999999999999999999999999999999
Q ss_pred EecCCCC
Q psy9313 347 FKTHKPL 353 (356)
Q Consensus 347 ~a~~~~~ 353 (356)
|++++..
T Consensus 85 ~a~~~~~ 91 (99)
T 2cpd_A 85 LAKPVDK 91 (99)
T ss_dssp CCCCCCC
T ss_pred ECCCCCC
Confidence 9998663
No 293
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.5e-17 Score=115.48 Aligned_cols=80 Identities=29% Similarity=0.512 Sum_probs=73.6
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
..+.+.++|||+|||..+++++|+++|++||.|.+|.+++ +||||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3467789999999999999999999999999999999874 39999999999999999999999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.++.+...
T Consensus 76 ~~a~~~~~ 83 (90)
T 2dnp_A 76 ELSTKGQK 83 (90)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99987644
No 294
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.72 E-value=4e-17 Score=118.37 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=73.2
Q ss_pred CCCcEEEEecCCC-----CCcHHHHHHhhcCCCceeEEEEeeCCCC-CCcceEEEEEEccHHHHHHHHHHhCCcccCCee
Q psy9313 269 GSGWCIFVYNLAP-----ETEDNVLWQLFGPFGAVQNVKVVRDPQT-YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRL 342 (356)
Q Consensus 269 ~~~~~l~V~nlp~-----~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~ 342 (356)
.++++|+|.||.. +.++++|+++|++||.|.+|.|+.++.+ +.++|+|||+|.+.++|.+|++.|||+.++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3677999999962 2378999999999999999999998764 688999999999999999999999999999999
Q ss_pred EEEEEecC
Q psy9313 343 LQVSFKTH 350 (356)
Q Consensus 343 l~v~~a~~ 350 (356)
|+|.|+..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 295
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.2e-17 Score=119.80 Aligned_cols=78 Identities=19% Similarity=0.380 Sum_probs=72.2
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
.+..+++|||+|||..+++++|+++|++||.|.++.+.+ ++|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 445679999999999999999999999999999999873 45899999999999999999999999999999999
Q ss_pred ecCC
Q psy9313 102 YARP 105 (356)
Q Consensus 102 ~~~~ 105 (356)
|+++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9876
No 296
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.56 E-value=3.8e-19 Score=132.64 Aligned_cols=83 Identities=24% Similarity=0.322 Sum_probs=79.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeE--------EEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQN--------VKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR 341 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr 341 (356)
+.++|||+|||+.+++++|+++|++||.|.. |.++.++.++.++|||||+|.+.++|.+|++.|||..|.|+
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 85 (116)
Confidence 5678999999999999999999999999998 99999988999999999999999999999999999999999
Q ss_pred eEEEEEecCCC
Q psy9313 342 LLQVSFKTHKP 352 (356)
Q Consensus 342 ~l~v~~a~~~~ 352 (356)
.|+|.|+++++
T Consensus 86 ~l~V~~a~~~~ 96 (116)
T 2lcw_A 86 PIKVSFATRRA 96 (116)
Confidence 99999998865
No 297
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=3.1e-17 Score=119.43 Aligned_cols=76 Identities=28% Similarity=0.456 Sum_probs=70.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
+.++|||+|||+.+++++|+++|++||.|..|.++ ++||||+|.+.++|.+|++.|||..|.|+.|.|.|++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 56789999999999999999999999999999986 3589999999999999999999999999999999998
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
++..
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 7653
No 298
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=121.79 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=71.1
Q ss_pred CCcEEEE--ecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCccc-----CCee
Q psy9313 270 SGWCIFV--YNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYAL-----GDRL 342 (356)
Q Consensus 270 ~~~~l~V--~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l-----~gr~ 342 (356)
++++||| +||++.+++++|+++|++||.|..|.++.+ +|||||+|.+.++|.+|++.|||..+ .|+.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 5678999 669999999999999999999999988643 79999999999999999999999988 6899
Q ss_pred EEEEEecCCCC
Q psy9313 343 LQVSFKTHKPL 353 (356)
Q Consensus 343 l~v~~a~~~~~ 353 (356)
|.|.|+...++
T Consensus 98 l~v~~a~~~p~ 108 (114)
T 2cq2_A 98 LYLNFVEKVQW 108 (114)
T ss_dssp CEEEEESCCCC
T ss_pred EEEEecccCcc
Confidence 99999997764
No 299
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=120.40 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=72.3
Q ss_pred cCCCCceEEEcCCCCC-CCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhC--CceeCCeEE
Q psy9313 22 VNEQNSNLIVNYVPQT-MTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELN--GLKLQNKSI 98 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~-~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--g~~~~g~~l 98 (356)
...++++|||+|||.+ +++++|+++|++||.|.+|.+++. +|||||+|.+.++|.+|++.|+ +..|.|+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 4678999999999998 999999999999999999999753 5799999999999999999886 456999999
Q ss_pred EEEecCCCcc
Q psy9313 99 KVSYARPSSE 108 (356)
Q Consensus 99 ~v~~~~~~~~ 108 (356)
.|.++.+...
T Consensus 95 ~V~~a~~~~~ 104 (112)
T 1x4f_A 95 KVDLSEKYKK 104 (112)
T ss_dssp EEEEECSCSS
T ss_pred EEEECccccc
Confidence 9999986543
No 300
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=118.66 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=75.1
Q ss_pred CCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 20 ~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.....++++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|+|..|.|+.|.
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3455678999999999999999999999999988766 24688999999999999999999999999999999999
Q ss_pred EEecCCCcc
Q psy9313 100 VSYARPSSE 108 (356)
Q Consensus 100 v~~~~~~~~ 108 (356)
|.++.+...
T Consensus 85 v~~a~~~~~ 93 (96)
T 1fjc_A 85 LYYTGEKGG 93 (96)
T ss_dssp EEECSSSCC
T ss_pred EEEcCCCCC
Confidence 999987543
No 301
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=113.47 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=64.9
Q ss_pred CcE-EEEecCCCCCcHHH----HHHhhcCCC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEE
Q psy9313 271 GWC-IFVYNLAPETEDNV----LWQLFGPFG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344 (356)
Q Consensus 271 ~~~-l~V~nlp~~~t~~~----L~~~f~~~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~ 344 (356)
+.| |||+|||+.+++++ |.++|++|| .|.+| ++ |+|||+|.+.++|.+|++.|+|..+.||.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999988 558999994 99988 33 9999999999999999999999999999999
Q ss_pred EEEecCCC
Q psy9313 345 VSFKTHKP 352 (356)
Q Consensus 345 v~~a~~~~ 352 (356)
|+||+.+.
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99999765
No 302
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=6.1e-18 Score=117.40 Aligned_cols=73 Identities=25% Similarity=0.455 Sum_probs=67.6
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe-EE
Q psy9313 26 NSNLIVNYVPQTM------TQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK-SI 98 (356)
Q Consensus 26 ~~~l~v~nlp~~~------te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~-~l 98 (356)
+++|||+|||..+ ++++|+++|++||.|.++.+++ .+|.++|||||+|.+.++|.+|+..|||..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4799999999999 7899999999999999999873 5789999999999999999999999999999999 88
Q ss_pred EE
Q psy9313 99 KV 100 (356)
Q Consensus 99 ~v 100 (356)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 65
No 303
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=118.20 Aligned_cols=80 Identities=25% Similarity=0.322 Sum_probs=73.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEE-EEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNV-KVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+++|||+|||+.+++++|+++|++||.|.+| .++.++.+ |.|||+|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 46789999999999999999999999999999 48887654 44999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
.++..
T Consensus 90 ~~~~~ 94 (96)
T 2e44_A 90 PDEMA 94 (96)
T ss_dssp CCCCS
T ss_pred Ccccc
Confidence 98854
No 304
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=5e-17 Score=121.15 Aligned_cols=76 Identities=25% Similarity=0.306 Sum_probs=69.7
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceE-EEEEEccHHHHHHHHHHhCCcccCC--eeEEEEEe
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGF-GFVCMTNYDEAVFAIQSLNGYALGD--RLLQVSFK 348 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~g~~l~g--r~l~v~~a 348 (356)
..|+|+||++.+|+++|.++|++||.|.+|+++.+. +|+ |||+|.+.++|.+|++.|||..|.| +.|+|+||
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 467799999999999999999999999999887642 677 9999999999999999999999988 99999999
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
+++.
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 305
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=117.45 Aligned_cols=82 Identities=30% Similarity=0.462 Sum_probs=73.8
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeE-EEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESC-KLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i-~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
.....+++|||+|||..+++++|+++|++||.|.++ .++.++.++ .|||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 10 PKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344568999999999999999999999999999999 477776544 399999999999999999999999999999
Q ss_pred EEecCCC
Q psy9313 100 VSYARPS 106 (356)
Q Consensus 100 v~~~~~~ 106 (356)
|.++.+.
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9999876
No 306
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=7.5e-18 Score=123.47 Aligned_cols=84 Identities=11% Similarity=0.186 Sum_probs=77.5
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCC---ceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGE---VESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~---i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
......++|||+|||.++|+++|+++|+.||. |..|.++.++. |+++|||||+|.+.++|.+|+. +++..+.|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567899999999999999999999999988 89999999976 9999999999999999999997 9999999999
Q ss_pred EEEEecCCC
Q psy9313 98 IKVSYARPS 106 (356)
Q Consensus 98 l~v~~~~~~ 106 (356)
|+|.++.+.
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998753
No 307
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.71 E-value=1.1e-17 Score=121.70 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=75.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|.+|++ +|..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45789999999999999999999999999999999998 89999999999999999999999 9999999999999998
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 654
No 308
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.71 E-value=7.6e-17 Score=117.34 Aligned_cols=81 Identities=27% Similarity=0.523 Sum_probs=73.5
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
....++++|||+|||..+++++|+++|++||.|..|.+++ +||||+|.+.++|.+|+..|+|..|.|+.|.|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 3456789999999999999999999999999999998863 49999999999999999999999999999999
Q ss_pred EecCCCccc
Q psy9313 101 SYARPSSEA 109 (356)
Q Consensus 101 ~~~~~~~~~ 109 (356)
.++.+....
T Consensus 78 ~~a~~~~~~ 86 (103)
T 2dgu_A 78 VFAKPPDQK 86 (103)
T ss_dssp EECCCCCCC
T ss_pred EEcCCCccc
Confidence 999876543
No 309
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=1.5e-16 Score=118.19 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=68.1
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceE-EEEEEccHHHHHHHHHHhCCcccCC--eeEEEEEe
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGF-GFVCMTNYDEAVFAIQSLNGYALGD--RLLQVSFK 348 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~g~~l~g--r~l~v~~a 348 (356)
..|+|+||++.+++++|.++|++||.|.+|.|+.. .|| |||+|.+.++|..|++.|||..|.| +.|+|.||
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 34679999999999999999999999999999753 376 9999999999999999999999987 69999999
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
+++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 9875
No 310
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=1.2e-16 Score=117.84 Aligned_cols=79 Identities=23% Similarity=0.481 Sum_probs=72.2
Q ss_pred cCCCCceEEEcCCCCC-CCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 22 VNEQNSNLIVNYVPQT-MTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~-~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
....+++|||+|||.. +++++|+++|++||.|.+|.+ .+|||||+|.+.++|.+|+..|+|..|.|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 4456799999999999 999999999999999999988 3579999999999999999999999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.++.+...
T Consensus 95 ~~a~~~~~ 102 (110)
T 1wf1_A 95 NMAGEPKP 102 (110)
T ss_dssp EESCCCCS
T ss_pred EECCCCCC
Confidence 99985543
No 311
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=124.08 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=72.8
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCce----eEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAV----QNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v----~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v 345 (356)
..++|||+|||+.+|+++|+++|++||.| ..|.|+.+. +|+++|||||+|.+.++|.+|++. |+..|+||.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45689999999999999999999999975 689999984 899999999999999999999995 999999999999
Q ss_pred EEecC
Q psy9313 346 SFKTH 350 (356)
Q Consensus 346 ~~a~~ 350 (356)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98864
No 312
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=121.71 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=72.1
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
..+..++|||+|||..+++++|+++|++||.|.+|.+++ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999998864 45799999999999999999999999999999999
Q ss_pred ecCCC
Q psy9313 102 YARPS 106 (356)
Q Consensus 102 ~~~~~ 106 (356)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98753
No 313
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=115.95 Aligned_cols=81 Identities=26% Similarity=0.405 Sum_probs=71.6
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCC-ceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCC-ceeCCeEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGE-VESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNG-LKLQNKSIK 99 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~-i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g-~~~~g~~l~ 99 (356)
...+.++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..+.|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3567899999999999999999999999999 6666553 357999999999999999999999 999999999
Q ss_pred EEecCCCccc
Q psy9313 100 VSYARPSSEA 109 (356)
Q Consensus 100 v~~~~~~~~~ 109 (356)
|.++.+....
T Consensus 77 v~~a~~~~~~ 86 (93)
T 2cqh_A 77 VDYSVSKKLR 86 (93)
T ss_dssp EEECCCCCCC
T ss_pred EEEccCcccc
Confidence 9999876443
No 314
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=117.91 Aligned_cols=77 Identities=26% Similarity=0.422 Sum_probs=69.6
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCc-eeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCC-cccCCeeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGA-VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG-YALGDRLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~-v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g-~~l~gr~l~v~~ 347 (356)
+.++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||| ..|.|+.|+|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 5678999999999999999999999999 6666652 378999999999999999999999 999999999999
Q ss_pred ecCCCC
Q psy9313 348 KTHKPL 353 (356)
Q Consensus 348 a~~~~~ 353 (356)
++++..
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 987653
No 315
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-16 Score=114.11 Aligned_cols=77 Identities=23% Similarity=0.442 Sum_probs=70.8
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.++++|||+|+ .+++++|+++|++||.|..|.+. .++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 36789999995 89999999999999999999984 34899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
++++.
T Consensus 85 ~~~~~ 89 (97)
T 1x5p_A 85 RKQPM 89 (97)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98764
No 316
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.70 E-value=1.9e-17 Score=120.39 Aligned_cols=82 Identities=26% Similarity=0.479 Sum_probs=76.6
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
....+++|||+|||..+++++|+++|++||.|.+|.++.++ +|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLG 81 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEE
Confidence 35567999999999999999999999999999999999998 89999999999999999999996 9999999999999
Q ss_pred ecCCC
Q psy9313 102 YARPS 106 (356)
Q Consensus 102 ~~~~~ 106 (356)
++.+.
T Consensus 82 ~a~~~ 86 (102)
T 2xs2_A 82 PAIRK 86 (102)
T ss_dssp EEEEC
T ss_pred ECCcC
Confidence 98754
No 317
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.70 E-value=5.5e-17 Score=114.42 Aligned_cols=77 Identities=23% Similarity=0.304 Sum_probs=71.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++| .|.++.+. .++|||||+|.+.++|.+|++.|||..+.|+.|+|.|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 45689999999999999999999999 99999884 458999999999999999999999999999999999998
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
....
T Consensus 77 ~~~~ 80 (88)
T 1wg1_A 77 TDAL 80 (88)
T ss_dssp CCCC
T ss_pred CCce
Confidence 7654
No 318
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=6.5e-17 Score=125.16 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=71.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC--eeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD--RLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g--r~l~v~~ 347 (356)
...+|||+||++.+|+++|+++|++||.|.+|.++.+ .++|||||+|.+.++|.+|++.|||..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3457899999999999999999999999999998754 247899999999999999999999999965 9999999
Q ss_pred ecCCC
Q psy9313 348 KTHKP 352 (356)
Q Consensus 348 a~~~~ 352 (356)
++++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 99764
No 319
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=115.69 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=70.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+.+++++|+++|++||.|.+| +.++.+|. ||||+|.+.++|.+|+. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45689999999999999999999999999987 66655554 99999999999999999 99999999999999998
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
++..
T Consensus 81 ~~~~ 84 (94)
T 2e5g_A 81 QKEF 84 (94)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 6654
No 320
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.2e-17 Score=117.05 Aligned_cols=80 Identities=16% Similarity=0.286 Sum_probs=71.1
Q ss_pred cCCCCceEEEcCCCC-CCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 22 VNEQNSNLIVNYVPQ-TMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~-~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
...++++|||+|||. .+++++|+++|++||.|.+|.+. +|||||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 456789999999998 99999999999999999999884 479999999999999999999999999999999
Q ss_pred EecCCCccc
Q psy9313 101 SYARPSSEA 109 (356)
Q Consensus 101 ~~~~~~~~~ 109 (356)
.++.+....
T Consensus 78 ~~a~~~~~~ 86 (96)
T 2kvi_A 78 EVSSSNARP 86 (96)
T ss_dssp EEEECCCC-
T ss_pred EEcCcCCCC
Confidence 999765443
No 321
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=6.7e-17 Score=119.13 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=70.4
Q ss_pred CCcEEEEecCCCC-CcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 270 SGWCIFVYNLAPE-TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 270 ~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.+++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.++|.+|++.|||..|.|+.|+|.|+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 5689999999999 999999999999999999998 3789999999999999999999999999999999999
Q ss_pred cCCC
Q psy9313 349 THKP 352 (356)
Q Consensus 349 ~~~~ 352 (356)
+.+.
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8544
No 322
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.70 E-value=2.6e-17 Score=137.21 Aligned_cols=82 Identities=17% Similarity=0.249 Sum_probs=77.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccC--CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVG--EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g--~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
..++|||+|||..+|+++|+++|++|| .|.+|.|+.++.+++++|||||+|.+.++|.+|+..|||..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 678899999999999999999999999 999999999999999999999999999999999988999999999999999
Q ss_pred cCCC
Q psy9313 103 ARPS 106 (356)
Q Consensus 103 ~~~~ 106 (356)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9754
No 323
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-18 Score=130.10 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=81.7
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCcee--------EEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCcee
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVES--------CKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL 93 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~--------i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 93 (356)
...++++|||+|||..+++++|+++|++||.|.. |.++.++.++.++|||||+|.+.++|.+|+..|||..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3567899999999999999999999999999998 89999988899999999999999999999999999999
Q ss_pred CCeEEEEEecCCCccc
Q psy9313 94 QNKSIKVSYARPSSEA 109 (356)
Q Consensus 94 ~g~~l~v~~~~~~~~~ 109 (356)
.|+.|+|.++.+....
T Consensus 83 ~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 83 SGNPIKVSFATRRADF 98 (116)
Confidence 9999999999876543
No 324
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=9.7e-18 Score=129.86 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=73.2
Q ss_pred CCCCcEEEEecCCCCCcHHHHHHhhcCCCceeEE--------EEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC
Q psy9313 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNV--------KVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG 339 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v--------~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~ 339 (356)
..++++|||+|||+.+|+++|+++|++||.|..+ .+. .+|.++|||||+|.+.++|.+|+..|||..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3467899999999999999999999999998764 333 35788999999999999999999999999999
Q ss_pred CeeEEEEEecCCC
Q psy9313 340 DRLLQVSFKTHKP 352 (356)
Q Consensus 340 gr~l~v~~a~~~~ 352 (356)
|+.|.|.||++..
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999998754
No 325
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.70 E-value=7e-18 Score=128.53 Aligned_cols=80 Identities=20% Similarity=0.371 Sum_probs=74.7
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..++|||+|||+++|+++|+++|++|| |..|.|+++++ |+++|||||+|.+.++|.+|+ .+|+..|.||.|.|.++.
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 556899999999999999999999999 67999999986 899999999999999999999 699999999999999988
Q ss_pred CCC
Q psy9313 350 HKP 352 (356)
Q Consensus 350 ~~~ 352 (356)
.+.
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 765
No 326
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=2.5e-17 Score=122.98 Aligned_cols=84 Identities=23% Similarity=0.279 Sum_probs=75.2
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCce--eEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVE--SCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~--~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
........++|||+|||+++|+++|+++|+.| .|. +|.++.++. |+++|||||+|.+.++|.+|++ +++..|.|+
T Consensus 35 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR 111 (126)
T 2hgm_A 35 NSADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHR 111 (126)
T ss_dssp CTTCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTB
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCE
Confidence 34456678999999999999999999999999 566 899999876 9999999999999999999995 688999999
Q ss_pred EEEEEecCC
Q psy9313 97 SIKVSYARP 105 (356)
Q Consensus 97 ~l~v~~~~~ 105 (356)
.|.|..+.+
T Consensus 112 ~I~V~~a~~ 120 (126)
T 2hgm_A 112 YIEVFKSSQ 120 (126)
T ss_dssp CCCCEEECH
T ss_pred EEEEEECCH
Confidence 999988764
No 327
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.69 E-value=3.5e-17 Score=122.24 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=72.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCcee--EEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQ--NVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~--~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~ 347 (356)
..++|||+|||+.+|+++|+++|++| .|. .|+|+.++. |+++|||||+|.+.++|.+|++ +++..|+||.|.|.+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 56789999999999999999999999 566 999999987 9999999999999999999999 588999999999998
Q ss_pred ecCC
Q psy9313 348 KTHK 351 (356)
Q Consensus 348 a~~~ 351 (356)
+..+
T Consensus 118 a~~~ 121 (126)
T 2hgm_A 118 SSQE 121 (126)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8643
No 328
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.4e-17 Score=122.08 Aligned_cols=81 Identities=20% Similarity=0.203 Sum_probs=73.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCc----eeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEV----ESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i----~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
....++|||+|||+++|+++|+++|++||.| .+|.++.+. +|+++|||||+|.+.++|.+|+. .++..|.|+.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEE
Confidence 4567999999999999999999999999975 689999984 89999999999999999999996 49999999999
Q ss_pred EEEecCC
Q psy9313 99 KVSYARP 105 (356)
Q Consensus 99 ~v~~~~~ 105 (356)
.|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9987754
No 329
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.69 E-value=1.6e-16 Score=127.02 Aligned_cols=85 Identities=21% Similarity=0.397 Sum_probs=79.9
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS 101 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~ 101 (356)
...++++|||+|||..+++++|+++|++||.|..|.++.+. ++.++|||||+|.+.++|.+|++.|+|..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred ecCCCc
Q psy9313 102 YARPSS 107 (356)
Q Consensus 102 ~~~~~~ 107 (356)
++.+..
T Consensus 163 ~a~~~~ 168 (177)
T 2f3j_A 163 LVASQI 168 (177)
T ss_dssp EESSGG
T ss_pred EecCCC
Confidence 997643
No 330
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.2e-16 Score=112.64 Aligned_cols=82 Identities=27% Similarity=0.381 Sum_probs=73.3
Q ss_pred CCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
......++++|||+|| .+++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+..|+|..|.|+.|
T Consensus 8 ~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 8 ERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred ccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 3445667899999996 89999999999999999999884 456899999999999999999999999999999
Q ss_pred EEEecCCCcc
Q psy9313 99 KVSYARPSSE 108 (356)
Q Consensus 99 ~v~~~~~~~~ 108 (356)
+|.++.+...
T Consensus 80 ~v~~a~~~~~ 89 (97)
T 1x5p_A 80 KVNIARKQPM 89 (97)
T ss_dssp EEECCSSCCC
T ss_pred EEEECCCCCC
Confidence 9999987644
No 331
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=1.6e-16 Score=112.07 Aligned_cols=77 Identities=19% Similarity=0.345 Sum_probs=71.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
.+.+++|||+|||..+++++|+++|++| .|.++.+. .++|||||+|.+.++|.+|++.|||..+.|+.|+|.+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 74 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQL 74 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEE
Confidence 3568999999999999999999999999 99999884 5678999999999999999999999999999999999
Q ss_pred cCCC
Q psy9313 103 ARPS 106 (356)
Q Consensus 103 ~~~~ 106 (356)
+...
T Consensus 75 a~~~ 78 (88)
T 1wg1_A 75 QPTD 78 (88)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 332
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.8e-17 Score=126.27 Aligned_cols=85 Identities=13% Similarity=0.185 Sum_probs=75.3
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
......++|||+|||.++|+++|+++|++|| +.+|.++.++. ++++|||||+|.+.++|.+|+ .+++..|.|+.|.|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3456788999999999999999999999999 67999999975 999999999999999999999 88999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.++.+...
T Consensus 118 ~~a~~~~~ 125 (139)
T 2hgn_A 118 FLNSTTGA 125 (139)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 99876543
No 333
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=108.93 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=66.5
Q ss_pred CCce-EEEcCCCCCCCHHH----HHHHhhccC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 25 QNSN-LIVNYVPQTMTQEE----LQHLFSSVG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 25 ~~~~-l~v~nlp~~~te~~----l~~~f~~~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
++.| |||+|||..+++++ |+++|++|| +|.+| ++ |+|||.|.+.++|.+|++.|+|..+.||.|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 3444 99999999999988 458999994 99988 33 899999999999999999999999999999
Q ss_pred EEEecCCCccc
Q psy9313 99 KVSYARPSSEA 109 (356)
Q Consensus 99 ~v~~~~~~~~~ 109 (356)
+|.+++..++.
T Consensus 77 ~v~~A~~~sd~ 87 (96)
T 2diu_A 77 IVSFTPKNREL 87 (96)
T ss_dssp EEESSCCSCCC
T ss_pred EEEecCCCcce
Confidence 99999876554
No 334
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-16 Score=112.68 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=70.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
....++|||+|||.++++++|+++|++||.|.+| +.++.++. ||||+|.+.++|.+|+. |+|..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4567899999999999999999999999999987 55555555 99999999999999998 999999999999998
Q ss_pred cCCCcc
Q psy9313 103 ARPSSE 108 (356)
Q Consensus 103 ~~~~~~ 108 (356)
+.+...
T Consensus 79 a~~~~~ 84 (94)
T 2e5g_A 79 REQKEF 84 (94)
T ss_dssp SCCSCC
T ss_pred CCcCCC
Confidence 875543
No 335
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=5.9e-17 Score=125.42 Aligned_cols=86 Identities=23% Similarity=0.365 Sum_probs=74.3
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEE--E---EecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCK--L---IRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~--~---~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
...++++|||+|||..+++++|+++|++||.|..+. + +....+|.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 366789999999999999999999999999987741 0 11123688999999999999999999999999999999
Q ss_pred EEEEEecCCCc
Q psy9313 97 SIKVSYARPSS 107 (356)
Q Consensus 97 ~l~v~~~~~~~ 107 (356)
.|.|.++++..
T Consensus 121 ~l~V~~a~~~~ 131 (143)
T 3egn_A 121 PMVVQFARSAR 131 (143)
T ss_dssp ECEEEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999997643
No 336
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.67 E-value=1.9e-16 Score=111.53 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=63.2
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcc--cCCeeEEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYA--LGDRLLQVSF 347 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~--l~gr~l~v~~ 347 (356)
+.++|||+|||+++|+++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+ ++|.. +.|+.|.|.+
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 5678999999999999999999999999999999875 58999999999999983 56655 4599999999
Q ss_pred ecCCC
Q psy9313 348 KTHKP 352 (356)
Q Consensus 348 a~~~~ 352 (356)
|.++.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 98765
No 337
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=3.9e-16 Score=120.81 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC--eEEEE
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN--KSIKV 100 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v 100 (356)
+....+|||+|||..+++++|+++|++||.|.+|.++.+. .+|||||+|.+.++|.+|++.|||..|.| +.|+|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V 118 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRI 118 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEE
Confidence 4455678999999999999999999999999999987542 46899999999999999999999999965 99999
Q ss_pred EecCCCc
Q psy9313 101 SYARPSS 107 (356)
Q Consensus 101 ~~~~~~~ 107 (356)
.|+++..
T Consensus 119 ~~Ak~~~ 125 (164)
T 1sjr_A 119 DFSKLTS 125 (164)
T ss_dssp EECSSSS
T ss_pred EEecCCc
Confidence 9999763
No 338
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.66 E-value=6.4e-16 Score=115.18 Aligned_cols=81 Identities=19% Similarity=0.328 Sum_probs=71.7
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceE-EEEEecCHHHHHHHHHHhCCceeCC--eEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGY-GFVNYYRTEDAERAIIELNGLKLQN--KSI 98 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~g~~~~g--~~l 98 (356)
.+..-.+|||+||+..+|+++|+++|++||.|.+|.++.+. +|+ |||+|.+.++|.+|++.|||..|.| +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 34455677799999999999999999999999999887643 466 9999999999999999999999988 999
Q ss_pred EEEecCCCc
Q psy9313 99 KVSYARPSS 107 (356)
Q Consensus 99 ~v~~~~~~~ 107 (356)
+|.|+++..
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999998764
No 339
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.7e-16 Score=114.69 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=72.7
Q ss_pred CceEEEcCC----CCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecC----HHH----HHHHHH--HhCCc
Q psy9313 26 NSNLIVNYV----PQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYR----TED----AERAII--ELNGL 91 (356)
Q Consensus 26 ~~~l~v~nl----p~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~----~~~----A~~a~~--~l~g~ 91 (356)
.+.|||+|| |+.+++.+|+.+|+.||.|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .++|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999999999999999999999996 433 788887 68999
Q ss_pred eeCCeEEEEEecCCC
Q psy9313 92 KLQNKSIKVSYARPS 106 (356)
Q Consensus 92 ~~~g~~l~v~~~~~~ 106 (356)
.|.|+.|+|.+-+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999987643
No 340
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=1.9e-16 Score=117.42 Aligned_cols=76 Identities=21% Similarity=0.270 Sum_probs=66.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCee-----EE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRL-----LQ 344 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~-----l~ 344 (356)
..++|||.|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+|++.|||..|.|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4568999999999999999999999999999999765 89999999999999999999999999988 77
Q ss_pred EEEecCCC
Q psy9313 345 VSFKTHKP 352 (356)
Q Consensus 345 v~~a~~~~ 352 (356)
|..+.++.
T Consensus 88 v~~~~~~~ 95 (115)
T 3beg_B 88 VKVDGPRS 95 (115)
T ss_dssp EEECC---
T ss_pred eccCCCCC
Confidence 77776544
No 341
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=1.2e-15 Score=110.55 Aligned_cols=83 Identities=16% Similarity=0.243 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCC-----CCCHHHHHHHhhccCCceeEEEEecCCC-CccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 23 NEQNSNLIVNYVPQ-----TMTQEELQHLFSSVGEVESCKLIRDKTT-AQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 23 ~~~~~~l~v~nlp~-----~~te~~l~~~f~~~g~i~~i~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
+.++++|+|+||.. +-++++|++.|++||.|.+|.++.++.+ +.++|+|||+|.+.++|.+|++.|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46789999999973 2378999999999999999999998654 68899999999999999999999999999999
Q ss_pred EEEEEecCC
Q psy9313 97 SIKVSYARP 105 (356)
Q Consensus 97 ~l~v~~~~~ 105 (356)
.|.|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 342
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.8e-16 Score=113.72 Aligned_cols=79 Identities=22% Similarity=0.402 Sum_probs=69.9
Q ss_pred cCCCCceEEE--cCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCcee-----C
Q psy9313 22 VNEQNSNLIV--NYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL-----Q 94 (356)
Q Consensus 22 ~~~~~~~l~v--~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~-----~ 94 (356)
...++++||| +||+.++++++|+++|++||.|.+|.++.+ +|||||+|.+.++|.+|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3456889999 669999999999999999999999987642 58999999999999999999999988 6
Q ss_pred CeEEEEEecCCC
Q psy9313 95 NKSIKVSYARPS 106 (356)
Q Consensus 95 g~~l~v~~~~~~ 106 (356)
|+.|.|.++..-
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 889999988743
No 343
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.2e-16 Score=115.53 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=63.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCC---CCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT---YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
..++|||+|||+.+++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|++ ++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEec
Confidence 567899999999999999999999999999 888888777 79999999999999999999999832 444444433
No 344
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.2e-15 Score=111.94 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=67.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceE-EEEEecCHHHHHHHHHHhCCceeCC--eEEEEEec
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGY-GFVNYYRTEDAERAIIELNGLKLQN--KSIKVSYA 103 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~g~~~~g--~~l~v~~~ 103 (356)
..|||+|||..+++++|+++|++||.|.+|.++.. .|+ |||+|.+.++|..|++.|||..|.| +.|+|.++
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 44679999999999999999999999999998652 275 9999999999999999999999987 69999999
Q ss_pred CCCc
Q psy9313 104 RPSS 107 (356)
Q Consensus 104 ~~~~ 107 (356)
++..
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8764
No 345
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=7.9e-16 Score=108.38 Aligned_cols=78 Identities=27% Similarity=0.421 Sum_probs=63.1
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCce--eCCeEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLK--LQNKSI 98 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~--~~g~~l 98 (356)
....+.++|||+|||.++|+++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+ ++|.. +.|+.|
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v 76 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISV 76 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEE
Confidence 35677899999999999999999999999999999998874 67999999999999983 45554 569999
Q ss_pred EEEecCCCc
Q psy9313 99 KVSYARPSS 107 (356)
Q Consensus 99 ~v~~~~~~~ 107 (356)
.|.++.++.
T Consensus 77 ~v~~a~~k~ 85 (89)
T 3d2w_A 77 HISNAEPKH 85 (89)
T ss_dssp EEEECC---
T ss_pred EEEEcCCCC
Confidence 999998754
No 346
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=6.9e-16 Score=108.60 Aligned_cols=73 Identities=21% Similarity=0.470 Sum_probs=67.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcc----C-------CceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSV----G-------EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL 91 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~----g-------~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 91 (356)
.++.++|||+|||.++++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 4678999999999999999999999999 8 8999988654 589999999999999999 99999
Q ss_pred eeCCeEEEEEe
Q psy9313 92 KLQNKSIKVSY 102 (356)
Q Consensus 92 ~~~g~~l~v~~ 102 (356)
.+.|+.|+|..
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999874
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=8.4e-16 Score=114.75 Aligned_cols=77 Identities=23% Similarity=0.442 Sum_probs=70.7
Q ss_pred CCCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEe
Q psy9313 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a 348 (356)
.++++|||+|+ .+++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|++.|||..|.|+.|.|.|+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 46789999995 69999999999999999999986 34899999999999999999999999999999999999
Q ss_pred cCCCC
Q psy9313 349 THKPL 353 (356)
Q Consensus 349 ~~~~~ 353 (356)
++++.
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98764
No 348
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=114.04 Aligned_cols=80 Identities=13% Similarity=0.187 Sum_probs=69.6
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCC---CccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT---AQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
....+++|||+|||.++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|+ .+.|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345689999999999999999999999999999 888887766 7899999999999999999998884 3677777
Q ss_pred EEEecC
Q psy9313 99 KVSYAR 104 (356)
Q Consensus 99 ~v~~~~ 104 (356)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 776554
No 349
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=7.4e-16 Score=111.74 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=71.2
Q ss_pred CCcEEEEecC--CCCCc--------HHHHHHhhcCCCceeEEEEeeCCCC--CCcceEEEEEEccHHHHHHHHHHhCCcc
Q psy9313 270 SGWCIFVYNL--APETE--------DNVLWQLFGPFGAVQNVKVVRDPQT--YKCKGFGFVCMTNYDEAVFAIQSLNGYA 337 (356)
Q Consensus 270 ~~~~l~V~nl--p~~~t--------~~~L~~~f~~~G~v~~v~i~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g~~ 337 (356)
++++|.|.|+ |.+.. +++|++.|++||.|.+|.|++++.+ +.++|+|||+|.+.++|.+|++.|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 6778999999 33333 3799999999999999999988765 3678999999999999999999999999
Q ss_pred cCCeeEEEEEecC
Q psy9313 338 LGDRLLQVSFKTH 350 (356)
Q Consensus 338 l~gr~l~v~~a~~ 350 (356)
++||.|+|.|+..
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999999853
No 350
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.63 E-value=5e-16 Score=115.21 Aligned_cols=78 Identities=26% Similarity=0.468 Sum_probs=66.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE-----
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS----- 97 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~----- 97 (356)
....++|||+|||.++++++|+++|++||.|..|.++.+ |||||+|.+.++|.+|++.|||..|.|+.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 356899999999999999999999999999999998765 79999999999999999999999999988
Q ss_pred EEEEecCCCc
Q psy9313 98 IKVSYARPSS 107 (356)
Q Consensus 98 l~v~~~~~~~ 107 (356)
++|..+.+..
T Consensus 86 i~v~~~~~~~ 95 (115)
T 3beg_B 86 IRVKVDGPRS 95 (115)
T ss_dssp CEEEECC---
T ss_pred EEeccCCCCC
Confidence 7777776543
No 351
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.63 E-value=5.3e-16 Score=128.37 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=70.9
Q ss_pred CCCcEEEEecCCCCC---------cHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCccc-
Q psy9313 269 GSGWCIFVYNLAPET---------EDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYAL- 338 (356)
Q Consensus 269 ~~~~~l~V~nlp~~~---------t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l- 338 (356)
..+++|||+||+..+ ++++|+++|++||.|.+|+|+.+ +|||||+|.+.++|..|++.|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 367899999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred -----------CCeeEEEEEecCCCCC
Q psy9313 339 -----------GDRLLQVSFKTHKPLP 354 (356)
Q Consensus 339 -----------~gr~l~v~~a~~~~~~ 354 (356)
.|+.|.|.||+..+-|
T Consensus 206 ~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 206 LPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CTTSTTGGGGGGSCCCEEEECC-----
T ss_pred ccccccccccCCCCEEEEEEccCCCCH
Confidence 8999999999987754
No 352
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.63 E-value=1.5e-15 Score=138.30 Aligned_cols=85 Identities=21% Similarity=0.391 Sum_probs=80.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEe
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~ 102 (356)
..+.++|||+|||..+|+++|.++|++||.|..|.|+.+..+|.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cCCCc
Q psy9313 103 ARPSS 107 (356)
Q Consensus 103 ~~~~~ 107 (356)
+.+..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98643
No 353
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.62 E-value=1.9e-15 Score=111.58 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=70.8
Q ss_pred CCcEEEEecCC--C---CCcHHHHHHhhcCCCceeEEEEeeCCC----CCCcceEEEEEEccHHHHHHHHHHhCCcccCC
Q psy9313 270 SGWCIFVYNLA--P---ETEDNVLWQLFGPFGAVQNVKVVRDPQ----TYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340 (356)
Q Consensus 270 ~~~~l~V~nlp--~---~~t~~~L~~~f~~~G~v~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 340 (356)
++++|+|.|+- . +-.++||++.|++||.|.+|.|++++. ++.++|+|||+|.+.++|.+|++.|||+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56789999993 2 224699999999999999999998864 45678999999999999999999999999999
Q ss_pred eeEEEEEec
Q psy9313 341 RLLQVSFKT 349 (356)
Q Consensus 341 r~l~v~~a~ 349 (356)
|.|+|.|+.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999985
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.61 E-value=2.4e-15 Score=112.23 Aligned_cols=80 Identities=28% Similarity=0.385 Sum_probs=71.7
Q ss_pred CcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
..+.++++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+..|+|..+.|+.|.|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 44567899999996 69999999999999999999985 35689999999999999999999999999999999
Q ss_pred EecCCCcc
Q psy9313 101 SYARPSSE 108 (356)
Q Consensus 101 ~~~~~~~~ 108 (356)
.|+.+...
T Consensus 106 ~~a~~~~~ 113 (121)
T 2bz2_A 106 NIARKQPM 113 (121)
T ss_dssp EECCSSCC
T ss_pred EEeCCCCC
Confidence 99987643
No 355
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.1e-15 Score=107.55 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=66.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCC----C-------ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCccc
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPF----G-------AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYAL 338 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~----G-------~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l 338 (356)
+.++|||+|||+.+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .|||..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 46789999999999999999999999 8 8999998765 799999999999999999 9999999
Q ss_pred CCeeEEEEE
Q psy9313 339 GDRLLQVSF 347 (356)
Q Consensus 339 ~gr~l~v~~ 347 (356)
.|+.|+|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999974
No 356
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.61 E-value=2.5e-15 Score=121.81 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=71.9
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEecC
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTH 350 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~~ 350 (356)
.++|||+|||+.+++++|+++|++||.|..|+++++.. |.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.|++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 46899999999999999999999999999999999864 889999999999999999999865 4599999999999875
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.7e-16 Score=108.86 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
++++|||+|||+.+++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|.+|.. .+..+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 5679999999999999999999999999999999865 58999999999999976422 1334589999999998
Q ss_pred CCCC
Q psy9313 350 HKPL 353 (356)
Q Consensus 350 ~~~~ 353 (356)
++..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
No 358
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=7.4e-15 Score=108.33 Aligned_cols=81 Identities=19% Similarity=0.257 Sum_probs=69.9
Q ss_pred CCCCcEEEEecCCCCCc-----------HHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCc
Q psy9313 268 HGSGWCIFVYNLAPETE-----------DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY 336 (356)
Q Consensus 268 ~~~~~~l~V~nlp~~~t-----------~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 336 (356)
+.++++|+|.||..... +++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34678999999954332 5899999999999999966 553 36999999999999999999999999
Q ss_pred ccCCeeEEEEEecCCC
Q psy9313 337 ALGDRLLQVSFKTHKP 352 (356)
Q Consensus 337 ~l~gr~l~v~~a~~~~ 352 (356)
.|.||.|+|.|+.++.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 9999999999998754
No 359
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.9e-16 Score=108.21 Aligned_cols=79 Identities=23% Similarity=0.360 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEec
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA 103 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~ 103 (356)
.++++|||+|||.++++++|+++|++||.|.+|.++.+ ++|||||+|.+.++|++|.. .+..+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 46799999999999999999999999999999998764 57899999999999986531 234569999999999
Q ss_pred CCCccc
Q psy9313 104 RPSSEA 109 (356)
Q Consensus 104 ~~~~~~ 109 (356)
.++...
T Consensus 76 ~~~~~~ 81 (88)
T 1wf0_A 76 EPKHNS 81 (88)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 876544
No 360
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=106.85 Aligned_cols=87 Identities=18% Similarity=0.248 Sum_probs=73.9
Q ss_pred CCCCcCCCCceEEEcCCCCCCC-----------HHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHH
Q psy9313 18 YQSDVNEQNSNLIVNYVPQTMT-----------QEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86 (356)
Q Consensus 18 ~~~~~~~~~~~l~v~nlp~~~t-----------e~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~ 86 (356)
.....+.++++|+|+||..... +++|+++|++||.|.+|.+ .++ .++|||||+|.+.++|.+|+.
T Consensus 7 ~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~ 82 (112)
T 2dit_A 7 GGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQ 82 (112)
T ss_dssp SCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHH
Confidence 3345678899999999954432 6899999999999999966 443 378999999999999999999
Q ss_pred HhCCceeCCeEEEEEecCCCcc
Q psy9313 87 ELNGLKLQNKSIKVSYARPSSE 108 (356)
Q Consensus 87 ~l~g~~~~g~~l~v~~~~~~~~ 108 (356)
.|||..|.|+.|.|.++.+...
T Consensus 83 ~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 83 TLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HSTTCEETTEECEEEECCSCCC
T ss_pred HcCCCEECCcEEEEEEeCCCCC
Confidence 9999999999999999987543
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=1.1e-14 Score=118.07 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
..++|||+|||.++++++|+++|++||.|..|.++++. +|.++|||||+|.+.++|.+|+. ..+..+.|+.|.|.++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~-~~~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHH-CTTCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEhH
Confidence 46899999999999999999999999999999999986 58999999999999999999995 45669999999999987
Q ss_pred CC
Q psy9313 105 PS 106 (356)
Q Consensus 105 ~~ 106 (356)
.-
T Consensus 186 ~y 187 (193)
T 2voo_A 186 DY 187 (193)
T ss_dssp TC
T ss_pred HH
Confidence 53
No 362
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.4e-15 Score=110.10 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=63.0
Q ss_pred EecCCCCCcHHHHHHhh------------cCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeE
Q psy9313 276 VYNLAPETEDNVLWQLF------------GPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLL 343 (356)
Q Consensus 276 V~nlp~~~t~~~L~~~f------------~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l 343 (356)
+.|||+.+++++|+++| ++||.|.+|.|+++.. ++++|||||+|.+.++|.+|+..|||+.++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44566666777666665 9999999999998764 7889999999999999999999999999999999
Q ss_pred EEEEec
Q psy9313 344 QVSFKT 349 (356)
Q Consensus 344 ~v~~a~ 349 (356)
+|.|+.
T Consensus 99 ~v~~sp 104 (104)
T 1jmt_A 99 HAELSP 104 (104)
T ss_dssp CEEECC
T ss_pred EEEEcC
Confidence 999963
No 363
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.54 E-value=2.2e-14 Score=103.99 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=72.5
Q ss_pred CCCCceEEEcCC--CCCCC--------HHHHHHHhhccCCceeEEEEecCCC--CccceEEEEEecCHHHHHHHHHHhCC
Q psy9313 23 NEQNSNLIVNYV--PQTMT--------QEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAIIELNG 90 (356)
Q Consensus 23 ~~~~~~l~v~nl--p~~~t--------e~~l~~~f~~~g~i~~i~~~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~g 90 (356)
..+++.|.|.|+ |..+. ++||++.|++||.|.+|.|+++..+ +.++|+|||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 457899999998 43443 3789999999999999999988754 36789999999999999999999999
Q ss_pred ceeCCeEEEEEecCC
Q psy9313 91 LKLQNKSIKVSYARP 105 (356)
Q Consensus 91 ~~~~g~~l~v~~~~~ 105 (356)
..+.||.|+|.+..+
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998764
No 364
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.4e-14 Score=119.95 Aligned_cols=81 Identities=19% Similarity=0.392 Sum_probs=71.7
Q ss_pred CcCCCCceEEEcCCCCCC---------CHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCc
Q psy9313 21 DVNEQNSNLIVNYVPQTM---------TQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGL 91 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~~---------te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~ 91 (356)
.....+++|||+|||..+ +|++|+++|++||.|.+|.++.+ +|||||+|.+.++|..|+..|+|.
T Consensus 129 s~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 129 SFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp --CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTC
T ss_pred ccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCC
Confidence 346789999999999998 79999999999999999999864 589999999999999999999999
Q ss_pred ee------------CCeEEEEEecCCCc
Q psy9313 92 KL------------QNKSIKVSYARPSS 107 (356)
Q Consensus 92 ~~------------~g~~l~v~~~~~~~ 107 (356)
.| .|+.|.|.|+.+..
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EEeccccccccccCCCCEEEEEEccCCC
Confidence 99 89999999998643
No 365
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.50 E-value=8.5e-14 Score=101.98 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=66.6
Q ss_pred CCCcEEEEecCC--CC--------CcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCccc
Q psy9313 269 GSGWCIFVYNLA--PE--------TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYAL 338 (356)
Q Consensus 269 ~~~~~l~V~nlp--~~--------~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l 338 (356)
.++++|.+.|+= .+ -.++||++.|++||.|.+|.|+++. ++|+|||+|.+.++|.+|++.|||+.+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 367789999993 22 1237899999999999999997662 489999999999999999999999999
Q ss_pred CCeeEEEEEec
Q psy9313 339 GDRLLQVSFKT 349 (356)
Q Consensus 339 ~gr~l~v~~a~ 349 (356)
+||.|+|.|+.
T Consensus 81 ~GR~i~v~~~~ 91 (114)
T 3s6e_A 81 AGKMITAAYVP 91 (114)
T ss_dssp TTEECEEEEEC
T ss_pred CCEEEEEEEEc
Confidence 99999999986
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.50 E-value=1e-13 Score=102.34 Aligned_cols=82 Identities=15% Similarity=0.264 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCC--C---CHHHHHHHhhccCCceeEEEEecCC----CCccceEEEEEecCHHHHHHHHHHhCCceeC
Q psy9313 24 EQNSNLIVNYVPQT--M---TQEELQHLFSSVGEVESCKLIRDKT----TAQSLGYGFVNYYRTEDAERAIIELNGLKLQ 94 (356)
Q Consensus 24 ~~~~~l~v~nlp~~--~---te~~l~~~f~~~g~i~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 94 (356)
.++++|+|+|+-.. + .++||++.|++||.|.+|.|++++. ++.++|+|||+|.+.++|.+|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 37899999999432 2 3689999999999999999999864 3578899999999999999999999999999
Q ss_pred CeEEEEEecCC
Q psy9313 95 NKSIKVSYARP 105 (356)
Q Consensus 95 g~~l~v~~~~~ 105 (356)
||.|+|.+...
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998753
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=2.2e-13 Score=97.28 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=64.1
Q ss_pred CcEEEEecCC-------CCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeE
Q psy9313 271 GWCIFVYNLA-------PETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLL 343 (356)
Q Consensus 271 ~~~l~V~nlp-------~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l 343 (356)
..+|.|.-.. ..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|++.+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 3456666543 4589999999999999999999983 5699999999999999999997554 689999
Q ss_pred EEEEecCCCC
Q psy9313 344 QVSFKTHKPL 353 (356)
Q Consensus 344 ~v~~a~~~~~ 353 (356)
+|.|++.++.
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999987763
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=3.6e-14 Score=102.69 Aligned_cols=72 Identities=25% Similarity=0.432 Sum_probs=62.5
Q ss_pred EcCCCCCCCHHHHHHHh------------hccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEE
Q psy9313 31 VNYVPQTMTQEELQHLF------------SSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSI 98 (356)
Q Consensus 31 v~nlp~~~te~~l~~~f------------~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l 98 (356)
+.|||..+++++|++.| ++||.|.+|.++++. +++++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 44566666777776555 999999999999876 47899999999999999999999999999999999
Q ss_pred EEEec
Q psy9313 99 KVSYA 103 (356)
Q Consensus 99 ~v~~~ 103 (356)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.7e-12 Score=92.64 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCC-------CCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 23 NEQNSNLIVNYVP-------QTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 23 ~~~~~~l~v~nlp-------~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
+....+|.|.-.+ ..+++++|+++|++||.|.+|.++ +.++|||||+|.+.++|..|++.++ .+.|
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g 79 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVD 79 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCC
Confidence 3346678887765 458999999999999999999987 3578999999999999999997644 4689
Q ss_pred eEEEEEecCCCcc
Q psy9313 96 KSIKVSYARPSSE 108 (356)
Q Consensus 96 ~~l~v~~~~~~~~ 108 (356)
+.|+|.|+++...
T Consensus 80 ~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 80 NPLKISWLEGQPQ 92 (100)
T ss_dssp SBCEEECSSCCCC
T ss_pred CeEEEEEccCCCC
Confidence 9999999986543
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=7.1e-13 Score=115.67 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=66.0
Q ss_pred CCCCcEEEEec--CCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccC---Ce-
Q psy9313 268 HGSGWCIFVYN--LAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALG---DR- 341 (356)
Q Consensus 268 ~~~~~~l~V~n--lp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~---gr- 341 (356)
..++.+|||+| |++.+|+++|+++|++||.|.+|.++. ++|||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 34777999999 578999999999999999999987754 3799999999999999999999999873 45
Q ss_pred -eEEEEEec
Q psy9313 342 -LLQVSFKT 349 (356)
Q Consensus 342 -~l~v~~a~ 349 (356)
.|.|.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 67888875
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.36 E-value=3.7e-12 Score=93.24 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=67.6
Q ss_pred CCCCceEEEcCCCCCCC----------HHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCce
Q psy9313 23 NEQNSNLIVNYVPQTMT----------QEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLK 92 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~t----------e~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~ 92 (356)
+.+++.|.|.|+=..-. ++||++.|++||.|.+|.+.++. .+|+|||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45788999999854432 36789999999999999986653 48999999999999999999999999
Q ss_pred eCCeEEEEEecC
Q psy9313 93 LQNKSIKVSYAR 104 (356)
Q Consensus 93 ~~g~~l~v~~~~ 104 (356)
+.|+.|.|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999985
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=3.7e-12 Score=111.14 Aligned_cols=77 Identities=21% Similarity=0.418 Sum_probs=66.1
Q ss_pred cCCCCceEEEcC--CCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeC---Ce
Q psy9313 22 VNEQNSNLIVNY--VPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQ---NK 96 (356)
Q Consensus 22 ~~~~~~~l~v~n--lp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~---g~ 96 (356)
...++.+|||+| |+..+||++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||..+. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 467899999999 578999999999999999999987754 4689999999999999999999999873 45
Q ss_pred --EEEEEecC
Q psy9313 97 --SIKVSYAR 104 (356)
Q Consensus 97 --~l~v~~~~ 104 (356)
.+.+.++.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 56667664
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1.4e-11 Score=84.11 Aligned_cols=73 Identities=27% Similarity=0.364 Sum_probs=62.7
Q ss_pred CCcEEEEecCC----CCCcH----HHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCe
Q psy9313 270 SGWCIFVYNLA----PETED----NVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDR 341 (356)
Q Consensus 270 ~~~~l~V~nlp----~~~t~----~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr 341 (356)
+..||+|.-.+ ..+-+ .+|.+.|++||.|..++++.+. +||+|.+.++|.+|++ |||..+.||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 45578888776 23333 7799999999999999998873 8999999999999999 999999999
Q ss_pred eEEEEEecCC
Q psy9313 342 LLQVSFKTHK 351 (356)
Q Consensus 342 ~l~v~~a~~~ 351 (356)
.|+|+++++.
T Consensus 77 ~LkV~lkt~d 86 (91)
T 2dnr_A 77 TITIALKSPS 86 (91)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEeCCCC
Confidence 9999998853
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=4.8e-11 Score=87.24 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=66.3
Q ss_pred CCCcEEEEecCCCC-CcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEcc-HHHHHHHHHHhC--CcccCCeeEE
Q psy9313 269 GSGWCIFVYNLAPE-TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTN-YDEAVFAIQSLN--GYALGDRLLQ 344 (356)
Q Consensus 269 ~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--g~~l~gr~l~ 344 (356)
.+++.|+|+|+++. ++.++|+++|++||.|.+|.+.++.. .|||+|.+ ..+|..|+..|+ |..|.|..++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 47889999999999 99999999999999999999988853 59999999 899999999995 6789998888
Q ss_pred EEEe
Q psy9313 345 VSFK 348 (356)
Q Consensus 345 v~~a 348 (356)
+...
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7654
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=9.3e-11 Score=85.74 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=69.3
Q ss_pred CcCCCCceEEEcCCCCC-CCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecC-HHHHHHHHHHhC--CceeCCe
Q psy9313 21 DVNEQNSNLIVNYVPQT-MTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYR-TEDAERAIIELN--GLKLQNK 96 (356)
Q Consensus 21 ~~~~~~~~l~v~nlp~~-~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--g~~~~g~ 96 (356)
-.-.+++.|+|+||+.. +++++|+++|++||.|..|.+.++.. .|||.|.+ .++|..|+..++ +..|.|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 34567999999999999 99999999999999999999988764 69999999 899999999995 7789998
Q ss_pred EEEEEecC
Q psy9313 97 SIKVSYAR 104 (356)
Q Consensus 97 ~l~v~~~~ 104 (356)
.+++....
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887664
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-10 Score=79.16 Aligned_cols=77 Identities=26% Similarity=0.449 Sum_probs=66.0
Q ss_pred cCCCCceEEEcCCCC----CCCH----HHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCcee
Q psy9313 22 VNEQNSNLIVNYVPQ----TMTQ----EELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL 93 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~----~~te----~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~ 93 (356)
..++..||+|.-.|. .+-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|+. |||..+
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEe
Confidence 456778899888773 3433 6788999999999999998874 8999999999999996 999999
Q ss_pred CCeEEEEEecCCCc
Q psy9313 94 QNKSIKVSYARPSS 107 (356)
Q Consensus 94 ~g~~l~v~~~~~~~ 107 (356)
.|+.|+|..++|..
T Consensus 74 ~Gr~LkV~lkt~dW 87 (91)
T 2dnr_A 74 LNRTITIALKSPSG 87 (91)
T ss_dssp TTEEEEEEECCCSS
T ss_pred CCeEEEEEeCCCCc
Confidence 99999999998754
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.14 E-value=2.3e-10 Score=95.05 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=65.9
Q ss_pred EEEEecC-----CCCCcHHHHHHhhcCCCceeEEEEeeCCC----CCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeE
Q psy9313 273 CIFVYNL-----APETEDNVLWQLFGPFGAVQNVKVVRDPQ----TYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLL 343 (356)
Q Consensus 273 ~l~V~nl-----p~~~t~~~L~~~f~~~G~v~~v~i~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l 343 (356)
.+.+.|+ ..+-.+++|.+.|++||.|.++.|+++.. ++.++|++||+|.+.++|.+|++.|||+.++||.|
T Consensus 126 v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i 205 (222)
T 3dxb_A 126 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 205 (222)
T ss_dssp EEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred cchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEE
Confidence 4555555 23446789999999999999999986544 45889999999999999999999999999999999
Q ss_pred EEEEec
Q psy9313 344 QVSFKT 349 (356)
Q Consensus 344 ~v~~a~ 349 (356)
++.|+.
T Consensus 206 ~~~~~~ 211 (222)
T 3dxb_A 206 VAEVYD 211 (222)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999975
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=2.1e-10 Score=78.67 Aligned_cols=72 Identities=17% Similarity=0.269 Sum_probs=61.9
Q ss_pred CCcEEEEecCCCC-----CcH----HHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC
Q psy9313 270 SGWCIFVYNLAPE-----TED----NVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340 (356)
Q Consensus 270 ~~~~l~V~nlp~~-----~t~----~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g 340 (356)
+..||+|.-++.. +-+ .+|.+.|++||.|..+++..+. +||+|.+.++|.+|++ |||..+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 5558999988632 222 6699999999999999998872 9999999999999999 99999999
Q ss_pred eeEEEEEecC
Q psy9313 341 RLLQVSFKTH 350 (356)
Q Consensus 341 r~l~v~~a~~ 350 (356)
|.|+|++..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998764
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=4.1e-10 Score=77.19 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=66.5
Q ss_pred CCCcCCCCceEEEcCCCCC-----CCH----HHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhC
Q psy9313 19 QSDVNEQNSNLIVNYVPQT-----MTQ----EELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELN 89 (356)
Q Consensus 19 ~~~~~~~~~~l~v~nlp~~-----~te----~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 89 (356)
-+...++..||+|.-++.+ +-. .+|.+.|.+||.|..+++..++ +||+|.+.++|.+|++ |+
T Consensus 8 i~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ld 78 (95)
T 1ufw_A 8 SSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VD 78 (95)
T ss_dssp SCCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GG
T ss_pred ceecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cC
Confidence 3456778899999988753 322 5688999999999999998874 9999999999999996 99
Q ss_pred CceeCCeEEEEEecCC
Q psy9313 90 GLKLQNKSIKVSYARP 105 (356)
Q Consensus 90 g~~~~g~~l~v~~~~~ 105 (356)
|..+.||.|+|.+..+
T Consensus 79 G~~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 79 GMKVKGRAVKISGPSS 94 (95)
T ss_dssp GSEETTEEEEEECCCC
T ss_pred CeeeCCeEEEEeccCC
Confidence 9999999999998654
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.89 E-value=7.3e-09 Score=72.30 Aligned_cols=71 Identities=13% Similarity=0.193 Sum_probs=66.0
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCC-----CceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPF-----GAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~ 344 (356)
..++|-+.|||+.+++..|+.+.+++ |.+..+.+..| .+-|+|+|.+...|-+|.-.|+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 35689999999999999999999999 99999999888 56799999999999999999999999999999
Q ss_pred EE
Q psy9313 345 VS 346 (356)
Q Consensus 345 v~ 346 (356)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 85
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.84 E-value=7.5e-09 Score=85.87 Aligned_cols=79 Identities=15% Similarity=0.237 Sum_probs=65.8
Q ss_pred CceEEEcCCCC-----CCCHHHHHHHhhccCCceeEEEEecCC----CCccceEEEEEecCHHHHHHHHHHhCCceeCCe
Q psy9313 26 NSNLIVNYVPQ-----TMTQEELQHLFSSVGEVESCKLIRDKT----TAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96 (356)
Q Consensus 26 ~~~l~v~nlp~-----~~te~~l~~~f~~~g~i~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~ 96 (356)
+..+.+.|+-. .-.+++|++.|++||.|.++.++++.. +++++|++||+|.+.++|.+|+..|||..+.||
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44455555432 235689999999999999999986644 348999999999999999999999999999999
Q ss_pred EEEEEecC
Q psy9313 97 SIKVSYAR 104 (356)
Q Consensus 97 ~l~v~~~~ 104 (356)
.|.+.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999875
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=5.8e-07 Score=62.81 Aligned_cols=73 Identities=12% Similarity=0.203 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc-----CCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEE
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSV-----GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~-----g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~ 99 (356)
..++|-|-|||..++...|+.+++++ |.+..|.+.+|.. =|+|+|.+...|-+|.-.|+|..|.|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47899999999999999999999999 9999999999863 699999999999999889999999999999
Q ss_pred EEec
Q psy9313 100 VSYA 103 (356)
Q Consensus 100 v~~~ 103 (356)
+...
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8754
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=2.8e-06 Score=58.97 Aligned_cols=90 Identities=23% Similarity=0.331 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcc-----CCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeE
Q psy9313 23 NEQNSNLIVNYVPQTMTQEELQHLFSSV-----GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97 (356)
Q Consensus 23 ~~~~~~l~v~nlp~~~te~~l~~~f~~~-----g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~ 97 (356)
.....+|.|.|||+.+.++.|.-+|+.- |.|.++.... +-|+|+|.+.+.|++.| .-..+.|.+..
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL-~k~~H~L~~~~ 75 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVL-AQADHELHGAQ 75 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHH-TCSCCBSSSSB
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHh-cCCcceecCeE
Confidence 4457899999999999999999999882 5788887654 37999999999999999 44588899999
Q ss_pred EEEEecCCCcccccccceEEcCCCCCCC
Q psy9313 98 IKVSYARPSSEAIKRANLYVSGLPKHMT 125 (356)
Q Consensus 98 l~v~~~~~~~~~~~~~~l~v~nl~~~~t 125 (356)
|.|....+ ...++|++.+|++.++
T Consensus 76 LsV~P~~~----~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 76 LSLRPAPP----RAPARLLLQGLPPGTS 99 (104)
T ss_dssp CEEEECCC----CCCCCCCCCSCCCCCC
T ss_pred EEEEcCCC----CCcceEeeecCCCCCC
Confidence 99977554 3567799999998765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=8.1e-06 Score=56.98 Aligned_cols=74 Identities=9% Similarity=0.001 Sum_probs=63.1
Q ss_pred cEEEEecCCCCC-c----HHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEE
Q psy9313 272 WCIFVYNLAPET-E----DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346 (356)
Q Consensus 272 ~~l~V~nlp~~~-t----~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~ 346 (356)
++|+|.||+.++ . .+.++++|..|+++......++. .-..|.|.+.++|.+|...||+..+.|+.++|-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 479999998655 2 25778999999998888777764 248999999999999999999999999999999
Q ss_pred EecCC
Q psy9313 347 FKTHK 351 (356)
Q Consensus 347 ~a~~~ 351 (356)
|+.+.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 98743
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.05 E-value=2.8e-05 Score=53.43 Aligned_cols=69 Identities=19% Similarity=0.352 Sum_probs=58.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCC--ccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA--QSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 27 ~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
++|-|++||+.+||+++.+.++.+..+.....+..+.+. ....-|||.|.+.+++....+.++|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 579999999999999999999999887777776665433 244569999999999999999999998744
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=4.2e-05 Score=53.38 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=63.7
Q ss_pred CceEEEcCCCCCC-CH----HHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEE
Q psy9313 26 NSNLIVNYVPQTM-TQ----EELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100 (356)
Q Consensus 26 ~~~l~v~nlp~~~-te----~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v 100 (356)
.++|+|+||+.++ .. +.++.+|..|++.......+.-. =..|.|.+.++|.+|...|++..++|+.++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 5789999999876 32 56789999999988887776532 4689999999999999999999999999999
Q ss_pred EecCCC
Q psy9313 101 SYARPS 106 (356)
Q Consensus 101 ~~~~~~ 106 (356)
.++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 998753
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.86 E-value=0.00013 Score=50.02 Aligned_cols=58 Identities=24% Similarity=0.336 Sum_probs=48.5
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHh
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 88 (356)
.+.-...++| +.|..+.-.||.++|+.||. ..|.++.|- .|||.|.+.+.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3444556677 99999999999999999995 448887774 7999999999999999765
No 388
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00033 Score=48.60 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=60.5
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCC-----CceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEE
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPF-----GAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~-----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~ 344 (356)
.+.+|.|.|||..+.++.|.-+|++- |.|.++.... +-|+|+|.+...|++++.. ..+.|.|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 56789999999999999999999872 5788877644 3599999999999999982 36788899999
Q ss_pred EEEecCCC
Q psy9313 345 VSFKTHKP 352 (356)
Q Consensus 345 v~~a~~~~ 352 (356)
|.....+.
T Consensus 78 V~P~~~~~ 85 (104)
T 2dhx_A 78 LRPAPPRA 85 (104)
T ss_dssp EEECCCCC
T ss_pred EEcCCCCC
Confidence 97765543
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.77 E-value=0.00039 Score=47.72 Aligned_cols=82 Identities=12% Similarity=0.216 Sum_probs=64.7
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCC--cceEEEEEEccHHHHHHHHHHhCCcccCC-----eeEE
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYK--CKGFGFVCMTNYDEAVFAIQSLNGYALGD-----RLLQ 344 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~a~~~l~g~~l~g-----r~l~ 344 (356)
+.|.|++||+.+|++++++.++....+.....+....+.+ ....|+|.|.+.+++..-.+.++|+.+.+ ....
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 3689999999999999999999998887777766544332 23569999999999999999999987653 3556
Q ss_pred EEEecCCCC
Q psy9313 345 VSFKTHKPL 353 (356)
Q Consensus 345 v~~a~~~~~ 353 (356)
|.||.-...
T Consensus 82 VE~AP~qkv 90 (91)
T 1uw4_A 82 VEFAPFQKA 90 (91)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCcC
Confidence 788765543
No 390
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.60 E-value=0.00024 Score=51.07 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=57.1
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCC-eeEEEEEe
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD-RLLQVSFK 348 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~g-r~l~v~~a 348 (356)
..+-|.|.+.|... ...+..+|++||.|.+.... ....+..|.|.+..+|++|+. .||..|+| -.|-|...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 34579999999884 67788999999999987762 125799999999999999999 69999985 55555553
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.58 E-value=0.00046 Score=47.28 Aligned_cols=56 Identities=21% Similarity=0.440 Sum_probs=46.4
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhC
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN 334 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 334 (356)
..-.++| ++|.++-..||.++|+.||.| .|..+-| .-|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3345666 999999999999999999965 5666665 369999999999999999763
No 392
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.0004 Score=49.95 Aligned_cols=81 Identities=15% Similarity=0.156 Sum_probs=60.0
Q ss_pred CCCCCCCcCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeC
Q psy9313 15 RSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQ 94 (356)
Q Consensus 15 ~~~~~~~~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~ 94 (356)
.....++.....+-|.|-+.|+.. -..|..+|++||.|.+...... ..+-.|.|.+..+|++|| ..||..|.
T Consensus 13 ~~~l~~~~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~------~NWihI~Y~s~~~A~rAL-~kNG~ii~ 84 (119)
T 1wwh_A 13 GDSLTSEDHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKAL-SKDGRIFG 84 (119)
T ss_dssp --------CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS------SSEEEEEESSHHHHHHHH-TTTTCEET
T ss_pred CcccCCCCCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC------CCeEEEEeCCHHHHHHHH-HhCCeEec
Confidence 334444556678999999999984 6778899999999998876222 238999999999999999 67999997
Q ss_pred C-eEEEEEec
Q psy9313 95 N-KSIKVSYA 103 (356)
Q Consensus 95 g-~~l~v~~~ 103 (356)
| -.|-|.+.
T Consensus 85 g~~mIGV~p~ 94 (119)
T 1wwh_A 85 ESIMIGVKPC 94 (119)
T ss_dssp TTEECEEEEC
T ss_pred CCEEEEEEEC
Confidence 5 56677664
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.40 E-value=0.00037 Score=47.90 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=45.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhC
Q psy9313 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELN 89 (356)
Q Consensus 28 ~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 89 (356)
.++| +.|..+.-.||.++|+.|| -..|.++.|- .|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4556 9999999999999999999 4557777763 79999999999999997664
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.35 E-value=0.0004 Score=47.74 Aligned_cols=53 Identities=23% Similarity=0.469 Sum_probs=44.7
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhC
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN 334 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 334 (356)
.++| ++|.++-..||.++|++||.| .|..+-| .-|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3555 999999999999999999954 5666665 369999999999999999764
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.31 E-value=0.00027 Score=48.76 Aligned_cols=72 Identities=10% Similarity=0.248 Sum_probs=52.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCC--ccceEEEEEecCHHHHHHHHHHhCCceeCC
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA--QSLGYGFVNYYRTEDAERAIIELNGLKLQN 95 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~g~~~~g 95 (356)
..+-+|-||.||+.+||+++.+.++.+-.+.....+..+.+. ....-|||.|.+.++.....+..+|..+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 346789999999999999998888776443222222222111 233459999999999999999999998743
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.97 E-value=0.00097 Score=48.60 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=55.4
Q ss_pred CcEEEEecCCCCCcHHHHHHhhcCCCceeE-EEEeeCC--------CC----C-CcceEEEEEEccHHHHHHHHHHhCCc
Q psy9313 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQN-VKVVRDP--------QT----Y-KCKGFGFVCMTNYDEAVFAIQSLNGY 336 (356)
Q Consensus 271 ~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~-v~i~~~~--------~~----~-~~~g~afV~f~~~~~A~~a~~~l~g~ 336 (356)
..-|.|.+.|... ...+.++|++||.|.. +...++. .+ . ...++.-|+|++..+|.+|++ .||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3468999998775 4558889999999865 2111100 00 0 124688999999999999999 7999
Q ss_pred ccCCeeEEEEEec
Q psy9313 337 ALGDRLLQVSFKT 349 (356)
Q Consensus 337 ~l~gr~l~v~~a~ 349 (356)
.|.|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877776653
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.81 E-value=0.0018 Score=47.18 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=56.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhccCCcee-EEEEe------------cCCCC-ccceEEEEEecCHHHHHHHHHHhCC
Q psy9313 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVES-CKLIR------------DKTTA-QSLGYGFVNYYRTEDAERAIIELNG 90 (356)
Q Consensus 25 ~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~-i~~~~------------~~~~~-~~~g~afV~f~~~~~A~~a~~~l~g 90 (356)
..+.|.|-+.|++ ....+.+.|+++|.|.+ +...+ .+... ....+..|.|.+..+|.+|| ..||
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENG 83 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTT
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCC
Confidence 3567889999776 45668899999998876 21111 00001 13458899999999999999 6799
Q ss_pred ceeCCeEEEEEecCC
Q psy9313 91 LKLQNKSIKVSYARP 105 (356)
Q Consensus 91 ~~~~g~~l~v~~~~~ 105 (356)
..|.|..|-|.+..+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888876653
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.68 E-value=0.0048 Score=42.51 Aligned_cols=77 Identities=16% Similarity=0.229 Sum_probs=55.7
Q ss_pred EEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCC--cceEEEEEEccHHHHHHHHHHhCCcccCC-----eeEEE
Q psy9313 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYK--CKGFGFVCMTNYDEAVFAIQSLNGYALGD-----RLLQV 345 (356)
Q Consensus 273 ~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~--~~g~afV~f~~~~~A~~a~~~l~g~~l~g-----r~l~v 345 (356)
.|.|+.||+.+|++++.+.++..-.+.....+....+.+ .-..|+|.|.+.++...-.+..+|..+-+ -...|
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~V 90 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVV 90 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEE
Confidence 599999999999999999988876554333333222211 12458999999999999999999987553 35556
Q ss_pred EEec
Q psy9313 346 SFKT 349 (356)
Q Consensus 346 ~~a~ 349 (356)
.||.
T Consensus 91 E~AP 94 (97)
T 2l08_A 91 EFAP 94 (97)
T ss_dssp EECC
T ss_pred EecC
Confidence 6664
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.10 E-value=0.0039 Score=56.37 Aligned_cols=56 Identities=11% Similarity=0.320 Sum_probs=43.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHH
Q psy9313 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85 (356)
Q Consensus 24 ~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 85 (356)
...++|+|. .|..+++.+|.++|++||+|.++.+..++ | -||.|+|.+.+++..++
T Consensus 51 qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 51 QAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp HHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHH
T ss_pred HhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHH
Confidence 456899997 79999999999999999999999887654 3 59999999999999776
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.99 E-value=0.0039 Score=56.40 Aligned_cols=54 Identities=9% Similarity=0.119 Sum_probs=40.9
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHH
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~ 331 (356)
++|+|. .|...++.+|.++|++||.|.++.+..+. .-||.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 479997 79999999999999999999998887652 3599999999999887765
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=92.54 E-value=0.43 Score=44.00 Aligned_cols=56 Identities=25% Similarity=0.341 Sum_probs=46.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCC
Q psy9313 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNG 90 (356)
Q Consensus 26 ~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g 90 (356)
...++|+ +|..+...+|.+.|+.||. .+|.++.+. .|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHHh
Confidence 3467776 9999999999999999995 456665543 799999999999999988753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=86.66 E-value=2.9 Score=38.49 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=43.5
Q ss_pred ceEEcCCCCCCCHHHHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHhcC
Q psy9313 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191 (356)
Q Consensus 114 ~l~v~nl~~~~t~~~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 191 (356)
.+++-.+|..+...+|.++|+.||.+ +|..+ ....|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~f~~~~~~~~i~~~fs~fg~v-~V~wi----------------------ddt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVTFPKEWKTSDLYQLFSAFGNI-QISWI----------------------DDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEECCTTCCHHHHHHHGGGGCCC-EEEEC----------------------SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCHHHHHHHHHhcCCE-EEEEE----------------------cCCeEEEEECCHHHHHHHHHHHHh
Confidence 34444599999999999999999954 34332 346799999999999999998854
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=77.53 E-value=13 Score=24.64 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=47.8
Q ss_pred cCCCCceEEEcCCCCCCCHHHHHHHhhccCCceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhC
Q psy9313 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELN 89 (356)
Q Consensus 22 ~~~~~~~l~v~nlp~~~te~~l~~~f~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 89 (356)
.-..+|.|.|-|+|..+-..++.-+....|---.+..+ .|.|.+.|.+.++-..|+..|-
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 35678999999999999999999999888854444332 2589999999999999997663
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=58.63 E-value=14 Score=23.75 Aligned_cols=59 Identities=8% Similarity=0.226 Sum_probs=38.2
Q ss_pred CCCHHHHHHHhhccCC-----ceeEEEEecCCCCccceEEEEEecCHHHHHHHHHHhCCceeCCeEEEEEecC
Q psy9313 37 TMTQEELQHLFSSVGE-----VESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104 (356)
Q Consensus 37 ~~te~~l~~~f~~~g~-----i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~~~g~~l~v~~~~ 104 (356)
.+...+|..++..-+. |-.|.+..+ |.||+-.... |..++..|++..+.|+.+.+..++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 3677888888876543 445555332 7898887654 677888999999999999887653
No 405
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=58.58 E-value=24 Score=22.55 Aligned_cols=60 Identities=7% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCcHHHHHHhhcCCCc-----eeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHhCCcccCCeeEEEEEec
Q psy9313 281 PETEDNVLWQLFGPFGA-----VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349 (356)
Q Consensus 281 ~~~t~~~L~~~f~~~G~-----v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~g~~l~gr~l~v~~a~ 349 (356)
..+...+|..++..-+. |-.+.+.. .+.||+-.. ..|..+++.|++..+.|+.+.|..++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 45677777777765543 44555533 368888885 45778899999999999999998764
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=58.11 E-value=27 Score=26.68 Aligned_cols=56 Identities=13% Similarity=0.114 Sum_probs=39.3
Q ss_pred EEEEecCCC-C--------CcHHHHHHhh--cCCCceeEEEEeeCCCCCCcceEEEEEEccH-HHHHHHHH
Q psy9313 273 CIFVYNLAP-E--------TEDNVLWQLF--GPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY-DEAVFAIQ 331 (356)
Q Consensus 273 ~l~V~nlp~-~--------~t~~~L~~~f--~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~-~~A~~a~~ 331 (356)
+++|.|+|. . .+..+|++.| ..|.++. |+...++. ..+|+|.|.|.+. ..-..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHHH
Confidence 688889986 2 3347899977 9998864 66666653 4589999999864 33344444
No 407
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=57.76 E-value=38 Score=22.40 Aligned_cols=56 Identities=21% Similarity=0.204 Sum_probs=43.3
Q ss_pred CCcEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHHh
Q psy9313 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333 (356)
Q Consensus 270 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 333 (356)
.+|-+.|-|+|..+-..++.-...-.|---.|..+. |.|++.|.+.++.+-|+..|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHH
Confidence 567899999999888877766666666544555432 56999999999999999877
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.32 E-value=73 Score=24.30 Aligned_cols=55 Identities=11% Similarity=0.211 Sum_probs=37.5
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hccCCceeEEEEecCCCCccceEEEEEecCHHH-HHHHH
Q psy9313 28 NLIVNYVPQ-T--------MTQEELQHLF--SSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED-AERAI 85 (356)
Q Consensus 28 ~l~v~nlp~-~--------~te~~l~~~f--~~~g~i~~i~~~~~~~~~~~~g~afV~f~~~~~-A~~a~ 85 (356)
.+.|-|+|. . ....+|++.| ..|.++. |..+.+. .-.+|+|.|.|.+--. -..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHH
Confidence 455677776 2 4457899977 9998755 6666664 3477899999976433 44455
No 409
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=36.26 E-value=48 Score=23.08 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHhhc-cCCceeEEEEe----cCCCCccceEEEEEecCHHHHHHH
Q psy9313 36 QTMTQEELQHLFSS-VGEVESCKLIR----DKTTAQSLGYGFVNYYRTEDAERA 84 (356)
Q Consensus 36 ~~~te~~l~~~f~~-~g~i~~i~~~~----~~~~~~~~g~afV~f~~~~~A~~a 84 (356)
...+..+|++.+.+ |+.-.++.++. ....|.+.|||.| |.+.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45678888876655 44322222222 2334678888865 7788888753
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.36 E-value=1.1e+02 Score=20.34 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=41.2
Q ss_pred EEEecCCCCCcHHHHHHhhcC-CC-ceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHH
Q psy9313 274 IFVYNLAPETEDNVLWQLFGP-FG-AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332 (356)
Q Consensus 274 l~V~nlp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 332 (356)
-++.-+....+..+|++.+++ || .|..|..+..+. ...-|+|.+..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~---~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR---GEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT---SCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC---CceEEEEEcCCCCcHHHHHHh
Confidence 456667888999999988877 55 577777766552 244699999988777776554
No 411
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=32.70 E-value=41 Score=23.14 Aligned_cols=49 Identities=10% Similarity=0.201 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHhhc-cCCceeEE----EEecCCCCccceEEEEEecCHHHHHHHH
Q psy9313 36 QTMTQEELQHLFSS-VGEVESCK----LIRDKTTAQSLGYGFVNYYRTEDAERAI 85 (356)
Q Consensus 36 ~~~te~~l~~~f~~-~g~i~~i~----~~~~~~~~~~~g~afV~f~~~~~A~~a~ 85 (356)
...+..+|++.+.+ |+.-.++. +......|.+.|||.| |.+.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56788899877766 34222222 2223334678888865 77777777654
No 412
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=31.93 E-value=39 Score=23.27 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHhhc-cCCceeE----EEEecCCCCccceEEEEEecCHHHHHH
Q psy9313 36 QTMTQEELQHLFSS-VGEVESC----KLIRDKTTAQSLGYGFVNYYRTEDAER 83 (356)
Q Consensus 36 ~~~te~~l~~~f~~-~g~i~~i----~~~~~~~~~~~~g~afV~f~~~~~A~~ 83 (356)
...+..+|++.+.+ |+.-.++ .+......|.+.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788999877665 3422222 22223334678888865 778887765
No 413
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=30.41 E-value=46 Score=22.73 Aligned_cols=48 Identities=19% Similarity=0.281 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHhhc-cCCceeEEEEecCCC----CccceEEEEEecCHHHHHHH
Q psy9313 36 QTMTQEELQHLFSS-VGEVESCKLIRDKTT----AQSLGYGFVNYYRTEDAERA 84 (356)
Q Consensus 36 ~~~te~~l~~~f~~-~g~i~~i~~~~~~~~----~~~~g~afV~f~~~~~A~~a 84 (356)
...+..+|++.+.+ |+.-.++.++....| |.+.|||.| |.+.+.|++.
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk~ 81 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAMLY 81 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45678888876655 443344444444333 567777765 5666666543
No 414
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=30.25 E-value=68 Score=23.39 Aligned_cols=62 Identities=11% Similarity=0.214 Sum_probs=47.9
Q ss_pred HHHHhhcccCCeEEEEEecccccccccccccCCCCCCCCCcccEEEEEeCCHHHHHHHHHHh
Q psy9313 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189 (356)
Q Consensus 128 ~l~~~f~~~g~i~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~a~~~~ 189 (356)
.-..+|..||-+..+.---+.....++.++.......++-.--|.+|+|.+.+..+++..++
T Consensus 49 ~a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kv 110 (141)
T 2okq_A 49 KAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKM 110 (141)
T ss_dssp HHHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 34578899998887776666655556777777777777777789999999999999888654
No 415
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=27.48 E-value=33 Score=16.11 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.7
Q ss_pred HHHHHHHhhccC
Q psy9313 40 QEELQHLFSSVG 51 (356)
Q Consensus 40 e~~l~~~f~~~g 51 (356)
-.+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 467889999887
No 416
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=26.81 E-value=1.8e+02 Score=23.89 Aligned_cols=48 Identities=21% Similarity=0.440 Sum_probs=39.2
Q ss_pred ceEEEcCCCC-CCCHHHHHHHhhcc-------CCceeEEEEecCCCCccceEEEEE
Q psy9313 27 SNLIVNYVPQ-TMTQEELQHLFSSV-------GEVESCKLIRDKTTAQSLGYGFVN 74 (356)
Q Consensus 27 ~~l~v~nlp~-~~te~~l~~~f~~~-------g~i~~i~~~~~~~~~~~~g~afV~ 74 (356)
+.+-|..++. .++|++|...++++ +++-.+.+...+++|++--|.|..
T Consensus 167 TIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~i 222 (270)
T 4a8j_B 167 TIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFIV 222 (270)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEEE
T ss_pred heEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEEE
Confidence 5666888887 56899999999987 367788888888999998888853
No 417
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=24.86 E-value=1.1e+02 Score=22.63 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHhhc-cCCceeEEEEecCC----CCccceEEEEEecCHHHHHHH
Q psy9313 36 QTMTQEELQHLFSS-VGEVESCKLIRDKT----TAQSLGYGFVNYYRTEDAERA 84 (356)
Q Consensus 36 ~~~te~~l~~~f~~-~g~i~~i~~~~~~~----~~~~~g~afV~f~~~~~A~~a 84 (356)
...+..||++.+.. |+.-.++.++.... .|.+.|||.| |.+.+.|++.
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 45688899887766 55423333333322 3567888876 6777777753
No 418
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=22.73 E-value=1.4e+02 Score=19.75 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=38.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cC-CceeEEEEecCCCCccceEEEEEecCHHHHHHHH
Q psy9313 29 LIVNYVPQTMTQEELQHLFSS-VG-EVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85 (356)
Q Consensus 29 l~v~nlp~~~te~~l~~~f~~-~g-~i~~i~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 85 (356)
-|+.......+..+|++++++ || .|..|....-+ ....-|||.+....+|....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~---~~~KKA~VtL~~g~~aid~~ 79 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM---DGEKKAVVRLSEDDDAQEVA 79 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT---TSSEEEEEEECTTSCHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC---CCceEEEEEECCCCcHHHHH
Confidence 345556788999999999987 56 57777666643 23457999998887765543
No 419
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=21.89 E-value=1.1e+02 Score=22.25 Aligned_cols=47 Identities=17% Similarity=0.376 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHhhc-cCCceeEEEEe----cCCCCccceEEEEEecCHHHHHH
Q psy9313 36 QTMTQEELQHLFSS-VGEVESCKLIR----DKTTAQSLGYGFVNYYRTEDAER 83 (356)
Q Consensus 36 ~~~te~~l~~~f~~-~g~i~~i~~~~----~~~~~~~~g~afV~f~~~~~A~~ 83 (356)
...+..+|++.+.. |+.-.++.++. ....|.+.|||.| |.+.+.|++
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 46788999987755 55322322222 2334567778776 677777775
No 420
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=20.58 E-value=1.5e+02 Score=17.93 Aligned_cols=54 Identities=9% Similarity=-0.026 Sum_probs=40.9
Q ss_pred cEEEEecCCCCCcHHHHHHhhcCCCceeEEEEeeCCCCCCcceEEEEEEccHHHHHHHHHH
Q psy9313 272 WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332 (356)
Q Consensus 272 ~~l~V~nlp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 332 (356)
.++.|.++.-.-=...+...+.. ..|..+.+-.. .+.+.|.|++.++...+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHH
Confidence 36888999876677888888988 88888887433 56788998866666677764
Done!