Your job contains 1 sequence.
>psy9313
MMKHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIR
DKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGL
PKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHI
EAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAMRHFGNP
LHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQN
VKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKPLPPV
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy9313
(356 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 995 2.7e-100 1
FB|FBgn0086675 - symbol:fne "found in neurons" species:72... 992 5.6e-100 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 571 1.1e-91 2
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 571 1.1e-91 2
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 571 1.1e-91 2
UNIPROTKB|B1APY8 - symbol:ELAVL4 "ELAV-like protein 4" sp... 567 1.1e-91 2
UNIPROTKB|P26378 - symbol:ELAVL4 "ELAV-like protein 4" sp... 567 1.1e-91 2
MGI|MGI:107427 - symbol:Elavl4 "ELAV (embryonic lethal, a... 567 1.1e-91 2
RGD|1560027 - symbol:Elavl4 "ELAV (embryonic lethal, abno... 567 1.1e-91 2
UNIPROTKB|F1LRL1 - symbol:Elavl4 "ELAV-like protein 4" sp... 567 1.1e-91 2
UNIPROTKB|F1LRX3 - symbol:Elavl4 "ELAV-like protein 4" sp... 567 1.1e-91 2
UNIPROTKB|O09032 - symbol:Elavl4 "ELAV-like protein 4" sp... 567 1.1e-91 2
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 564 6.2e-91 2
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 564 6.2e-91 2
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 566 1.7e-90 2
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 893 1.7e-89 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 893 1.7e-89 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 893 1.7e-89 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 893 1.7e-89 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 893 1.7e-89 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 893 1.7e-89 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 892 2.2e-89 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 890 3.6e-89 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 882 2.5e-88 1
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 879 5.3e-88 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 879 5.3e-88 1
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 851 4.9e-85 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 845 2.1e-84 1
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 845 2.1e-84 1
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 845 2.1e-84 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 841 5.6e-84 1
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 841 5.6e-84 1
WB|WBGene00001368 - symbol:exc-7 species:6239 "Caenorhabd... 589 1.9e-81 2
FB|FBgn0260400 - symbol:elav "embryonic lethal abnormal v... 795 4.2e-79 1
UNIPROTKB|F1SNK9 - symbol:ELAVL2 "Uncharacterized protein... 737 5.9e-73 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 571 2.3e-55 1
UNIPROTKB|D4AAT0 - symbol:Elavl4 "ELAV-like protein 4" sp... 567 6.1e-55 1
ZFIN|ZDB-GENE-990415-245 - symbol:elavl1 "ELAV (embryonic... 539 5.6e-52 1
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 523 1.6e-51 2
UNIPROTKB|D3K5N7 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 534 1.9e-51 1
ZFIN|ZDB-GENE-000210-17 - symbol:hug "HuG" species:7955 "... 532 3.1e-51 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 527 1.1e-50 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 527 1.1e-50 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 527 1.1e-50 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 526 1.3e-50 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 524 2.2e-50 1
UNIPROTKB|F1PSC4 - symbol:ELAVL1 "Uncharacterized protein... 523 2.8e-50 1
UNIPROTKB|B4DVB8 - symbol:ELAVL1 "ELAV-like protein 1" sp... 523 2.8e-50 1
UNIPROTKB|Q15717 - symbol:ELAVL1 "ELAV-like protein 1" sp... 523 2.8e-50 1
UNIPROTKB|F1PPC3 - symbol:F1PPC3 "Uncharacterized protein... 365 8.7e-49 2
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 504 2.9e-48 1
UNIPROTKB|Q1JQ73 - symbol:elavl1-a "ELAV-like protein 1-A... 499 9.8e-48 1
FB|FBgn0264270 - symbol:Sxl "Sex lethal" species:7227 "Dr... 405 8.9e-38 1
FB|FBgn0024987 - symbol:ssx "sister-of-Sex-lethal" specie... 399 3.9e-37 1
DICTYBASE|DDB_G0290307 - symbol:DDB_G0290307 "ELAVL1-like... 188 1.0e-34 3
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 228 7.3e-30 2
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 229 4.5e-27 2
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 286 3.6e-25 1
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 195 3.4e-24 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 207 4.7e-24 2
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 191 5.4e-24 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 216 6.3e-24 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 211 9.7e-24 2
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family... 187 1.7e-23 2
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m... 186 2.3e-23 2
UNIPROTKB|H3BPI5 - symbol:PABPC3 "Polyadenylate-binding p... 185 3.5e-23 2
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m... 186 3.7e-23 2
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m... 186 3.8e-23 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 216 5.2e-23 2
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 184 5.3e-23 2
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe... 186 6.3e-23 2
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m... 184 6.9e-23 2
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"... 184 6.9e-23 2
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 168 7.6e-23 2
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 168 9.7e-23 2
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"... 184 1.2e-22 2
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m... 182 1.2e-22 2
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 174 2.5e-22 2
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 166 2.6e-22 2
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 166 2.8e-22 2
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 166 3.6e-22 2
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 173 4.4e-22 2
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 178 6.3e-22 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 190 1.2e-21 2
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 176 1.3e-21 2
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 174 1.4e-21 2
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 174 1.7e-21 2
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 174 2.3e-21 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 193 2.9e-21 2
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 196 3.7e-21 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 185 4.3e-21 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 185 5.0e-21 2
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 195 5.0e-21 3
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 198 5.3e-21 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 193 5.4e-21 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 193 5.4e-21 2
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 185 5.6e-21 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 185 6.0e-21 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 193 6.6e-21 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 193 7.0e-21 2
WARNING: Descriptions of 1056 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
Identities = 204/362 (56%), Positives = 257/362 (70%)
Query: 9 NTTQSHRSTYQSDVNEQ---NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
N ++ +T ++ N + +NLIVNY+PQTM+Q+E++ LF S GEVESCKLIRDK T
Sbjct: 89 NNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTG 148
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
QSLGYGFVNY + EDAE+AI LNGL+LQNK+IKVS ARPSSE+IK ANLYVSGLPK+MT
Sbjct: 149 QSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMT 208
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q DLE+LF PYG IITSRILCD + E+ +G +SKG+GF+RF+Q EA+ A
Sbjct: 209 QSDLESLFSPYGKIITSRILCDNITGEHA----AG------LSKGVGFIRFDQRFEADRA 258
Query: 186 MQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXX----------XXXXXXXXXX 235
++ELNGT P+ ++EPITVKFAN+P
Sbjct: 259 IKELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAAYIAPQNTRGGRAFPANAAAGAAAA 318
Query: 236 XXGNPLHHSA-RF-----KFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLW 289
+H +A R+ +++PLT+DL+ N M+ ++ SGWCIFVYNLAP+TE+NVLW
Sbjct: 319 AAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQGNTIASSGWCIFVYNLAPDTEENVLW 378
Query: 290 QLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKT 349
QLFGPFGAVQ+VKV+RD Q+ KCKGFGFV MTNY+EAV AIQSLNGY LG+R+LQVSFKT
Sbjct: 379 QLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKT 438
Query: 350 HK 351
+K
Sbjct: 439 NK 440
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 992 (354.3 bits), Expect = 5.6e-100, P = 5.6e-100
Identities = 208/347 (59%), Positives = 247/347 (71%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKT----------TA------- 65
+E +NLIVNY+PQTMTQEE++ LFSS+GE+ESCKL+RDK TA
Sbjct: 22 DESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQQ 81
Query: 66 -QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHM 124
QSLGYGFVNY R EDAE+A+ LNGL+LQNK IKVSYARPSSE+IK ANLYVSGLPK++
Sbjct: 82 GQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNL 141
Query: 125 TQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184
+Q DLE +F +G IITSRILCD +SG +SKG+GF+RF+Q EAE
Sbjct: 142 SQPDLEGMFASFGKIITSRILCDN---------ISG------LSKGVGFIRFDQRNEAER 186
Query: 185 AMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPLHHS 244
A+QELNG P+G +EPITVKFAN+P G L +
Sbjct: 187 AIQELNGKTPKGYAEPITVKFANNPSNSAKAQIAPPLTAYLTPQAAAATRRLAG-ALPSA 245
Query: 245 ARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVV 304
R +++PL DLL NS+LP ++ GSGWCIFVYNLAPETE+NVLWQLFGPFGAVQ+VKV+
Sbjct: 246 GRIRYSPLAGDLLANSILPGNAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVI 305
Query: 305 RDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
RD QT KCKGFGFV MTNYDEAV AIQSLNGY LG+R+LQVSFKT+K
Sbjct: 306 RDLQTSKCKGFGFVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKTNK 352
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 571 (206.1 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 118/189 (62%), Positives = 145/189 (76%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 62 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 121
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 181
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D+ V+G IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 182 TSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 226
Query: 201 ITVKFANSP 209
ITVKFAN+P
Sbjct: 227 ITVKFANNP 235
Score = 362 (132.5 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 67/105 (63%), Positives = 84/105 (80%)
Query: 248 KFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+RD
Sbjct: 280 RFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRD 339
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 340 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 384
Score = 150 (57.9 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 48/145 (33%), Positives = 75/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 147 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 206
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSG---LPKHMTQED--- 128
+AE AI LNG K + I V +A S+ +A LY S P + Q+
Sbjct: 207 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 266
Query: 129 -LENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S + D M S
Sbjct: 267 RLDNLLNMAYGVKRFSPMTIDGMTS 291
Score = 51 (23.0 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 346 KGFGFVTMTNYDEAAMAIASLNG 368
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 571 (206.1 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 118/189 (62%), Positives = 145/189 (76%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 61 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 120
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 180
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D+ V+G IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 181 TSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 225
Query: 201 ITVKFANSP 209
ITVKFAN+P
Sbjct: 226 ITVKFANNP 234
Score = 362 (132.5 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 67/105 (63%), Positives = 84/105 (80%)
Query: 248 KFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+RD
Sbjct: 279 RFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRD 338
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 339 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 383
Score = 150 (57.9 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 48/145 (33%), Positives = 75/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 146 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 205
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSG---LPKHMTQED--- 128
+AE AI LNG K + I V +A S+ +A LY S P + Q+
Sbjct: 206 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 265
Query: 129 -LENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S + D M S
Sbjct: 266 RLDNLLNMAYGVKRFSPMTIDGMTS 290
Score = 51 (23.0 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 345 KGFGFVTMTNYDEAAMAIASLNG 367
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 571 (206.1 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 118/189 (62%), Positives = 145/189 (76%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D+ V+G IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 153 TSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 201 ITVKFANSP 209
ITVKFAN+P
Sbjct: 198 ITVKFANNP 206
Score = 362 (132.5 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 67/105 (63%), Positives = 84/105 (80%)
Query: 248 KFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+RD
Sbjct: 251 RFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRD 310
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 311 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 150 (57.9 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 48/145 (33%), Positives = 75/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSG---LPKHMTQED--- 128
+AE AI LNG K + I V +A S+ +A LY S P + Q+
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 237
Query: 129 -LENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S + D M S
Sbjct: 238 RLDNLLNMAYGVKRFSPMTIDGMTS 262
Score = 51 (23.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 317 KGFGFVTMTNYDEAAMAIASLNG 339
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 567 (204.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 116/187 (62%), Positives = 144/187 (77%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 107 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 167 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 211
Query: 203 VKFANSP 209
VKFAN+P
Sbjct: 212 VKFANNP 218
Score = 366 (133.9 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 248 KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 277 RFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD 336
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 337 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 148 (57.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 227
Score = 90 (36.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
NG N++ ++ + NL V+ LP++MTQE+ +LF G I + +++ DK
Sbjct: 27 NGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK 86
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ G GFV + +AE A+ LNG
Sbjct: 87 ITGQSL---------------GYGFVNYIDPKDAEKAINTLNG 114
Score = 72 (30.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L L QLF +G + +++ D T +G GF+ EA AI+ L
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 334 NG 335
NG
Sbjct: 199 NG 200
Score = 51 (23.0 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 343 KGFGFVTMTNYDEAAMAIASLNG 365
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 567 (204.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 116/187 (62%), Positives = 144/187 (77%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 102 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 162 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 206
Query: 203 VKFANSP 209
VKFAN+P
Sbjct: 207 VKFANNP 213
Score = 366 (133.9 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 248 KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 272 RFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD 331
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 332 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 148 (57.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 222
Score = 90 (36.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
NG N++ ++ + NL V+ LP++MTQE+ +LF G I + +++ DK
Sbjct: 22 NGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK 81
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ G GFV + +AE A+ LNG
Sbjct: 82 ITGQSL---------------GYGFVNYIDPKDAEKAINTLNG 109
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L L QLF +G + +++ D T +G GF+ EA AI+ L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 334 NG 335
NG
Sbjct: 194 NG 195
Score = 51 (23.0 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 338 KGFGFVTMTNYDEAAMAIASLNG 360
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 567 (204.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 116/187 (62%), Positives = 144/187 (77%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 107 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 167 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 211
Query: 203 VKFANSP 209
VKFAN+P
Sbjct: 212 VKFANNP 218
Score = 366 (133.9 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 248 KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 277 RFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD 336
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 337 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 381
Score = 148 (57.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 227
Score = 90 (36.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
NG N++ ++ + NL V+ LP++MTQE+ +LF G I + +++ DK
Sbjct: 27 NGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK 86
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ G GFV + +AE A+ LNG
Sbjct: 87 ITGQSL---------------GYGFVNYIDPKDAEKAINTLNG 114
Score = 72 (30.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L L QLF +G + +++ D T +G GF+ EA AI+ L
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 334 NG 335
NG
Sbjct: 199 NG 200
Score = 51 (23.0 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 343 KGFGFVTMTNYDEAAMAIASLNG 365
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 567 (204.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 116/187 (62%), Positives = 144/187 (77%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 155 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 199
Query: 203 VKFANSP 209
VKFAN+P
Sbjct: 200 VKFANNP 206
Score = 366 (133.9 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 248 KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 265 RFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD 324
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 325 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 148 (57.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 178 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 215
Score = 90 (36.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
NG N++ ++ + NL V+ LP++MTQE+ +LF G I + +++ DK
Sbjct: 15 NGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK 74
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ G GFV + +AE A+ LNG
Sbjct: 75 ITGQSL---------------GYGFVNYIDPKDAEKAINTLNG 102
Score = 72 (30.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L L QLF +G + +++ D T +G GF+ EA AI+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 334 NG 335
NG
Sbjct: 187 NG 188
Score = 51 (23.0 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 331 KGFGFVTMTNYDEAAMAIASLNG 353
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 567 (204.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 116/187 (62%), Positives = 144/187 (77%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 46 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 105
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 106 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 165
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 166 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 210
Query: 203 VKFANSP 209
VKFAN+P
Sbjct: 211 VKFANNP 217
Score = 366 (133.9 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 248 KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 276 RFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD 335
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 336 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 380
Score = 148 (57.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 129 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 188
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 189 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 226
Score = 90 (36.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
NG N++ ++ + NL V+ LP++MTQE+ +LF G I + +++ DK
Sbjct: 26 NGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK 85
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ G GFV + +AE A+ LNG
Sbjct: 86 ITGQSL---------------GYGFVNYIDPKDAEKAINTLNG 113
Score = 72 (30.4 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L L QLF +G + +++ D T +G GF+ EA AI+ L
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 334 NG 335
NG
Sbjct: 198 NG 199
Score = 51 (23.0 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 342 KGFGFVTMTNYDEAAMAIASLNG 364
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 567 (204.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 116/187 (62%), Positives = 144/187 (77%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 102 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 162 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 206
Query: 203 VKFANSP 209
VKFAN+P
Sbjct: 207 VKFANNP 213
Score = 366 (133.9 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 248 KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 272 RFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD 331
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 332 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 376
Score = 148 (57.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 222
Score = 90 (36.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
NG N++ ++ + NL V+ LP++MTQE+ +LF G I + +++ DK
Sbjct: 22 NGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK 81
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ G GFV + +AE A+ LNG
Sbjct: 82 ITGQSL---------------GYGFVNYIDPKDAEKAINTLNG 109
Score = 72 (30.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L L QLF +G + +++ D T +G GF+ EA AI+ L
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 334 NG 335
NG
Sbjct: 194 NG 195
Score = 51 (23.0 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 338 KGFGFVTMTNYDEAAMAIASLNG 360
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 567 (204.7 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 116/187 (62%), Positives = 144/187 (77%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 35 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 95 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 154
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 155 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 199
Query: 203 VKFANSP 209
VKFAN+P
Sbjct: 200 VKFANNP 206
Score = 366 (133.9 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
Identities = 69/105 (65%), Positives = 85/105 (80%)
Query: 248 KFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 265 RFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD 324
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 325 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 369
Score = 148 (57.2 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 178 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 215
Score = 90 (36.7 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
NG N++ ++ + NL V+ LP++MTQE+ +LF G I + +++ DK
Sbjct: 15 NGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK 74
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ G GFV + +AE A+ LNG
Sbjct: 75 ITGQSL---------------GYGFVNYIDPKDAEKAINTLNG 102
Score = 72 (30.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L L QLF +G + +++ D T +G GF+ EA AI+ L
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 334 NG 335
NG
Sbjct: 187 NG 188
Score = 51 (23.0 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 331 KGFGFVTMTNYDEAAMAIASLNG 353
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 564 (203.6 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 117/189 (61%), Positives = 144/189 (76%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLI NY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D+ V+G IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 153 TSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 201 ITVKFANSP 209
ITVKFAN+P
Sbjct: 198 ITVKFANNP 206
Score = 362 (132.5 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 67/105 (63%), Positives = 84/105 (80%)
Query: 248 KFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+RD
Sbjct: 251 RFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRD 310
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 311 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 150 (57.9 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 48/145 (33%), Positives = 75/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSG---LPKHMTQED--- 128
+AE AI LNG K + I V +A S+ +A LY S P + Q+
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 237
Query: 129 -LENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S + D M S
Sbjct: 238 RLDNLLNMAYGVKRFSPMTIDGMTS 262
Score = 51 (23.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 317 KGFGFVTMTNYDEAAMAIASLNG 339
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 564 (203.6 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 117/189 (61%), Positives = 144/189 (76%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLI NY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D+ V+G IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 153 TSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 201 ITVKFANSP 209
ITVKFAN+P
Sbjct: 198 ITVKFANNP 206
Score = 362 (132.5 bits), Expect = 6.2e-91, Sum P(2) = 6.2e-91
Identities = 67/105 (63%), Positives = 84/105 (80%)
Query: 248 KFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+F+P+T D + + + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+RD
Sbjct: 251 RFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRD 310
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 311 FNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 355
Score = 150 (57.9 bits), Expect = 2.6e-47, Sum P(2) = 2.6e-47
Identities = 48/145 (33%), Positives = 75/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSG---LPKHMTQED--- 128
+AE AI LNG K + I V +A S+ +A LY S P + Q+
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRF 237
Query: 129 -LENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S + D M S
Sbjct: 238 RLDNLLNMAYGVKRFSPMTIDGMTS 262
Score = 51 (23.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 169 KGIGFVRFNQHIEAEHAMQELNG 191
KG GFV + EA A+ LNG
Sbjct: 317 KGFGFVTMTNYDEAAMAIASLNG 339
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 566 (204.3 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 119/202 (58%), Positives = 148/202 (73%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT-AQS 67
NT ++ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QS
Sbjct: 48 NTINCSSPVESNNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQS 107
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQE 127
LGYGFVNY +DAE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ+
Sbjct: 108 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQK 167
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
+LE LF YG IITSRIL D+ V+G +S+G+GF+RF++ IEAE A++
Sbjct: 168 ELEQLFSQYGRIITSRILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIK 212
Query: 188 ELNGTIPEGASEPITVKFANSP 209
LNG P GA+EPITVKFAN+P
Sbjct: 213 GLNGQKPPGATEPITVKFANNP 234
Score = 356 (130.4 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 68/114 (59%), Positives = 84/114 (73%)
Query: 239 NPLHHSARFKFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGA 297
N + + +F+P+ D + + H G+GWCIFVYNLAP+ ++++LWQ+FGPFGA
Sbjct: 272 NMAYGGIKSRFSPMAIDGMTSLAGINFPGHAGTGWCIFVYNLAPDADESILWQMFGPFGA 331
Query: 298 VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
V NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT K
Sbjct: 332 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 385
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 192/344 (55%), Positives = 236/344 (68%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 107 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 167 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 211
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPLHHSA-RFK------------- 248
VKFAN+P PLHH A RF+
Sbjct: 212 VKFANNPSQKTSQALLSQLYQSPNRRYP--------GPLHHQAQRFRLDNLLNMAYGVKR 263
Query: 249 FAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 264 FSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 323
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 324 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 158 (60.7 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 50/145 (34%), Positives = 74/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVS------GLPKHMTQE- 127
+AE AI LNG K + I V +A S+ +A LY S G H Q
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKTSQALLSQLYQSPNRRYPGPLHHQAQRF 249
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S I D M S
Sbjct: 250 RLDNLLNMAYGVKRFSPITIDGMTS 274
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 192/344 (55%), Positives = 236/344 (68%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 102 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 162 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 206
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPLHHSA-RFK------------- 248
VKFAN+P PLHH A RF+
Sbjct: 207 VKFANNPSQKSSQALLSQLYQSPNRRYP--------GPLHHQAQRFRLDNLLNMAYGVKR 258
Query: 249 FAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 259 FSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 318
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 319 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 157 (60.3 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 50/145 (34%), Positives = 74/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVS------GLPKHMTQE- 127
+AE AI LNG K + I V +A S+ +A LY S G H Q
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRF 244
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S I D M S
Sbjct: 245 RLDNLLNMAYGVKRFSPITIDGMTS 269
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 192/344 (55%), Positives = 236/344 (68%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 58 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 117
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 118 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 177
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 178 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 222
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPLHHSA-RFK------------- 248
VKFAN+P PLHH A RF+
Sbjct: 223 VKFANNPSQKSSQALLSQLYQSPNRRYP--------GPLHHQAQRFRLDNLLNMAYGVKR 274
Query: 249 FAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 275 FSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 334
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 335 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 378
Score = 157 (60.3 bits), Expect = 9.9e-09, P = 9.9e-09
Identities = 50/145 (34%), Positives = 74/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 141 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 200
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVS------GLPKHMTQE- 127
+AE AI LNG K + I V +A S+ +A LY S G H Q
Sbjct: 201 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRF 260
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S I D M S
Sbjct: 261 RLDNLLNMAYGVKRFSPITIDGMTS 285
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 192/344 (55%), Positives = 236/344 (68%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 101
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 102 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 161
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 162 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 206
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPLHHSA-RFK------------- 248
VKFAN+P PLHH A RF+
Sbjct: 207 VKFANNPSQKSSQALLSQLYQSPNRRYP--------GPLHHQAQRFRLDNLLNMAYGVKR 258
Query: 249 FAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 259 FSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 318
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 319 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 362
Score = 157 (60.3 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 50/145 (34%), Positives = 74/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 125 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 184
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVS------GLPKHMTQE- 127
+AE AI LNG K + I V +A S+ +A LY S G H Q
Sbjct: 185 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRF 244
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S I D M S
Sbjct: 245 RLDNLLNMAYGVKRFSPITIDGMTS 269
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 192/344 (55%), Positives = 236/344 (68%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 47 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 106
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 107 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 166
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 167 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 211
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPLHHSA-RFK------------- 248
VKFAN+P PLHH A RF+
Sbjct: 212 VKFANNPSQKSSQALLSQLYQSPNRRYP--------GPLHHQAQRFRLDNLLNMAYGVKR 263
Query: 249 FAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 264 FSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 323
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 324 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 367
Score = 157 (60.3 bits), Expect = 9.3e-09, P = 9.3e-09
Identities = 50/145 (34%), Positives = 74/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 130 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 189
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVS------GLPKHMTQE- 127
+AE AI LNG K + I V +A S+ +A LY S G H Q
Sbjct: 190 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRF 249
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S I D M S
Sbjct: 250 RLDNLLNMAYGVKRFSPITIDGMTS 274
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 893 (319.4 bits), Expect = 1.7e-89, P = 1.7e-89
Identities = 190/337 (56%), Positives = 232/337 (68%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
+ +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE+
Sbjct: 65 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEK 124
Query: 84 AIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF +G IITSR
Sbjct: 125 AINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSR 184
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITV 203
IL D+ V+G +S+G+GF+RF++ +EAE A++ LNG P GA+EPITV
Sbjct: 185 ILVDQ---------VTG------VSRGVGFIRFDRRVEAEEAIKGLNGQKPPGATEPITV 229
Query: 204 KFANSPXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXGNPLHHSARFK-FAPLTAD-- 255
KFAN+P N L+ + K F+P+T D
Sbjct: 230 KFANNPSQKSSQALLSHLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGV 289
Query: 256 -LLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKG 314
L LP + G+GWCIFVYNLAP+ ++NVLWQ+FGPFGAV NVKV+RD T KCKG
Sbjct: 290 TSLAGINLPAHA--GTGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKG 347
Query: 315 FGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
FGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 348 FGFVTMTNYDEAAVAIASLNGYRLGDRVLQVSFKTNK 384
Score = 151 (58.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + R
Sbjct: 147 SSASIRDANLYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRV 206
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 207 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKSSQALL 244
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 187/339 (55%), Positives = 234/339 (69%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D+ V+G IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 153 TSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 201 ITVKFANSPXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXGNPLH--HSARFKFAPLT 253
ITVKFAN+P N L+ + + +F+P+T
Sbjct: 198 ITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMT 257
Query: 254 ADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKC 312
D + + + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+RD T KC
Sbjct: 258 IDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 317
Query: 313 KGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
KGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 318 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 356
Score = 147 (56.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAIL 215
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 192/344 (55%), Positives = 235/344 (68%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 84 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 143
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 144 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 203
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 204 RILVDQ---------VTGG------SRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPIT 248
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPLHHSA-RFK------------- 248
VKFAN+P PLHH A RF+
Sbjct: 249 VKFANNPSQKTSQALLSQLYQSPNRRYP--------GPLHHQAQRFRLDNLLNMAYGVKR 300
Query: 249 FAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
F+P+T D + + + H G+GWCIFVYNL+P+++++VLWQLFGPFGAV NVKV+RD
Sbjct: 301 FSPITIDSMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDF 360
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 361 NTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 404
Score = 160 (61.4 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 50/145 (34%), Positives = 74/145 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 167 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGGSRGVGFIRFDKRI 226
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVS------GLPKHMTQE- 127
+AE AI LNG K + I V +A S+ +A LY S G H Q
Sbjct: 227 EAEEAIKGLNGQKPSGAAEPITVKFANNPSQKTSQALLSQLYQSPNRRYPGPLHHQAQRF 286
Query: 128 DLENLFR-PYGTIITSRILCDKMAS 151
L+NL YG S I D M S
Sbjct: 287 RLDNLLNMAYGVKRFSPITIDSMTS 311
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
Identities = 186/341 (54%), Positives = 234/341 (68%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ+MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 61 NTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKD 120
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 180
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P A+EP
Sbjct: 181 TSRILVDQ---------VTG------MSRGVGFIRFDKRIEAEEAIKGLNGQKPPAATEP 225
Query: 201 ITVKFANSPXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXGNPLH--HSARFKFAPLT 253
ITVKFAN+P N L+ + + +F P+T
Sbjct: 226 ITVKFANNPSQKTNQAILSQLYHSPNRRYPAPLAQQAQRFRLDNLLNMAYGVKSRFPPMT 285
Query: 254 ADLLNNSM---LPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTY 310
D + + +P + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+RD T
Sbjct: 286 IDGMTSLAGINIPGHA--GTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTN 343
Query: 311 KCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 344 KCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 384
Score = 152 (58.6 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 146 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRI 205
Query: 80 DAERAIIELNGLK--LQNKSIKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 206 EAEEAIKGLNGQKPPAATEPITVKFANNPSQKTNQAIL 243
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 187/336 (55%), Positives = 229/336 (68%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY DA+
Sbjct: 34 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 93
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVSGLPK M+Q+D+E LF YG IITS
Sbjct: 94 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITS 153
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D++ + G IS+G+GF+RF++ EAE A++ LNG P GA+EPIT
Sbjct: 154 RILVDQVTA--------G------ISRGVGFIRFDKRNEAEEAIKGLNGQKPLGAAEPIT 199
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXGNPLHHSARFK-FAPLTADL 256
VKFAN+P N L+ S K F+P+T D
Sbjct: 200 VKFANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQRFRLDNLLNASYGVKRFSPITIDS 259
Query: 257 LNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGF 315
+ + + + G+GWCIFVYNL+PE +++VLWQLFGPFGAV NVKV+RD T KCKGF
Sbjct: 260 MTSLAGVNLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGF 319
Query: 316 GFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
GFV MTNYDEA AI SLNGY LGDR+LQVSFKT K
Sbjct: 320 GFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTSK 355
Score = 148 (57.2 bits), Expect = 9.2e-08, P = 9.2e-08
Identities = 48/146 (32%), Positives = 76/146 (52%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ-SLGYGFVNYYRT 78
S + +++NL V+ +P+TM+Q++++ LFS G + + +++ D+ TA S G GF+ + +
Sbjct: 117 SSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGISRGVGFIRFDKR 176
Query: 79 EDAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLY------VSGLPKHMTQE 127
+AE AI LNG K + I V +A S+ +A LY +G H TQ
Sbjct: 177 NEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQTAARRYTGPLHHQTQR 236
Query: 128 -DLENLFRP-YGTIITSRILCDKMAS 151
L+NL YG S I D M S
Sbjct: 237 FRLDNLLNASYGVKRFSPITIDSMTS 262
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
Identities = 186/339 (54%), Positives = 233/339 (68%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 62 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 121
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 122 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 181
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D+ V+G IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 182 TSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 226
Query: 201 ITVKFANSPXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXGNPLH--HSARFKFAPLT 253
ITVKFAN+P N L+ + + +F+P+T
Sbjct: 227 ITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKSRFSPMT 286
Query: 254 ADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKC 312
D + + + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGAV NVKV+RD T KC
Sbjct: 287 IDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKC 346
Query: 313 KGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
KGFGFV MTNYDEA AI SLNGY LGDR+LQV FKT+K
Sbjct: 347 KGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV-FKTNK 384
Score = 147 (56.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 147 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 206
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 207 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAIL 244
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
Identities = 184/346 (53%), Positives = 229/346 (66%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQ+E + LF S+G++ESCKL+RDK T QSLGYGFVNY DA+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVSGLPK M+Q+++E LF YG IITS
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 155 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXX----------------XXXXXXGNPLHHSAR 246
VKFAN+P +PL AR
Sbjct: 200 VKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSSPLSLIAR 259
Query: 247 FKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVR 305
F +P+ D ++ + + P G GWCIFVYNL+PE +++VLWQLFGPFGAV NVKV+R
Sbjct: 260 F--SPIAIDGMSGLAGVGPVRGCGGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIR 317
Query: 306 DPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
D T KCKGFGFV MTNYDEA AI SLNGY LG+R+LQVSFKT K
Sbjct: 318 DFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 145 (56.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TM+Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSGLPK------HMTQE- 127
+AE AI LNG K + I V +A S+ +A +LY S + H TQ
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRF 237
Query: 128 DLENLFR-PYG 137
L+NL YG
Sbjct: 238 RLDNLLNMAYG 248
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 183/344 (53%), Positives = 228/344 (66%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQ+E + LF S+G++ESCKL+RDK T QSLGYGFVNY DA+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVSGLPK M+Q+++E LF YG IITS
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 155 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXGNPLHHSARFK--------F 249
VKFAN+P N L+ + K F
Sbjct: 200 VKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARF 259
Query: 250 APLTADLLNNSMLPPKS--LHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
+P+ D ++ S G+GWCIFVYNL+PE +++VLWQLFGPFGAV NVKV+RD
Sbjct: 260 SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 319
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LG+R+LQVSFKT K
Sbjct: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 145 (56.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TM+Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSGLPK------HMTQE- 127
+AE AI LNG K + I V +A S+ +A +LY S + H TQ
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRF 237
Query: 128 DLENLFR-PYG 137
L+NL YG
Sbjct: 238 RLDNLLNMAYG 248
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 183/344 (53%), Positives = 228/344 (66%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQ+E + LF S+G++ESCKL+RDK T QSLGYGFVNY DA+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVSGLPK M+Q+++E LF YG IITS
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 155 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXGNPLHHSARFK--------F 249
VKFAN+P N L+ + K F
Sbjct: 200 VKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARF 259
Query: 250 APLTADLLNNSMLPPKS--LHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
+P+ D ++ S G+GWCIFVYNL+PE +++VLWQLFGPFGAV NVKV+RD
Sbjct: 260 SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 319
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LG+R+LQVSFKT K
Sbjct: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 145 (56.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TM+Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSGLPK------HMTQE- 127
+AE AI LNG K + I V +A S+ +A +LY S + H TQ
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRF 237
Query: 128 DLENLFR-PYG 137
L+NL YG
Sbjct: 238 RLDNLLNMAYG 248
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
Identities = 184/345 (53%), Positives = 230/345 (66%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQ+E + LF S+G++ESCKL+RDK T QSLGYGFVNY DA+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVSGLPK M+Q+++E LF YG IITS
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 155 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXGNPLHHSARFKFAPLT---- 253
VKFAN+P N L+ + K +PL+
Sbjct: 200 VKFANNPSQKTGQALLTQLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSSPLSLIAR 259
Query: 254 -ADLLNNSM--LPPKSLHG----SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+ + + M L L G +GWCIFVYNL+PE +++VLWQLFGPFGAV NVKV+RD
Sbjct: 260 FSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRD 319
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LG+R+LQVSFKT K
Sbjct: 320 FTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 364
Score = 144 (55.7 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 43/131 (32%), Positives = 70/131 (53%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TM+Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSGLPK------HMTQE- 127
+AE AI LNG K + I V +A S+ +A LY S + H TQ
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTQLYQSSARRYAGPLHHQTQRF 237
Query: 128 DLENLFR-PYG 137
L+NL YG
Sbjct: 238 RLDNLLNMAYG 248
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 182/344 (52%), Positives = 227/344 (65%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQ+E + LF S+G++ESCKL+RDK T QSLGYGFVNY DA+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVSGLPK M+Q+++E LF YG IITS
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ +G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 155 RILLDQ---------ATG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXGNPLHHSARFK--------F 249
VKFAN+P N L+ + K F
Sbjct: 200 VKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARF 259
Query: 250 APLTADLLNNSMLPPKS--LHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
+P+ D ++ S G+GWCIFVYNL+PE +++VLWQLFGPFGAV NVKV+RD
Sbjct: 260 SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 319
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LG+R+LQVSFKT K
Sbjct: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 146 (56.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TM+Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSGLPK------HMTQE- 127
+AE AI LNG K + I V +A S+ +A +LY S + H TQ
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRF 237
Query: 128 DLENLFR-PYG 137
L+NL YG
Sbjct: 238 RLDNLLNMAYG 248
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 182/344 (52%), Positives = 227/344 (65%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQ+E + LF S+G++ESCKL+RDK T QSLGYGFVNY DA+
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDAD 94
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGLKLQ K+IKVSYARPSS +I+ ANLYVSGLPK M+Q+++E LF YG IITS
Sbjct: 95 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITS 154
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ +G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 155 RILLDQ---------ATG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPIT 199
Query: 203 VKFANSPXXXXXXXXXXXXXXXXXXXXXX-----XXXXXXGNPLHHSARFK--------F 249
VKFAN+P N L+ + K F
Sbjct: 200 VKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSLIARF 259
Query: 250 APLTADLLNNSMLPPKS--LHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
+P+ D ++ S G+GWCIFVYNL+PE +++VLWQLFGPFGAV NVKV+RD
Sbjct: 260 SPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDF 319
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T KCKGFGFV MTNYDEA AI SLNGY LG+R+LQVSFKT K
Sbjct: 320 TTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 146 (56.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TM+Q+E++ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRA---NLYVSGLPK------HMTQE- 127
+AE AI LNG K + I V +A S+ +A +LY S + H TQ
Sbjct: 178 EAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRF 237
Query: 128 DLENLFR-PYG 137
L+NL YG
Sbjct: 238 RLDNLLNMAYG 248
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 589 (212.4 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 119/202 (58%), Positives = 152/202 (75%)
Query: 8 YNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQS 67
Y +TQ + S D+ E +NLI+NY+PQ MTQEE++ LF+S+GE+ESCKL+RDK T QS
Sbjct: 23 YTSTQRYCSAPNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQS 82
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQE 127
LGYGFVNY R EDA RA+ NGL+LQNK+IKVSYARPS++ IK +NLYVSG+PK MT
Sbjct: 83 LGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYARPSNDQIKGSNLYVSGIPKSMTLH 142
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
+LE++FRP+G IITSRIL D V+G +SKG+GFVRF++ EA+ A++
Sbjct: 143 ELESIFRPFGQIITSRILSDN---------VTG------LSKGVGFVRFDKKDEADVAIK 187
Query: 188 ELNGTIPEGASEPITVKFANSP 209
LNG+IP G SE ITVKFAN+P
Sbjct: 188 TLNGSIPSGCSEQITVKFANNP 209
Score = 247 (92.0 bits), Expect = 1.9e-81, Sum P(2) = 1.9e-81
Identities = 51/109 (46%), Positives = 73/109 (66%)
Query: 244 SARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKV 303
+A + + L+A + + LPP +G+C+FVYNL+ +T+D +LWQLF FGA+ NVK+
Sbjct: 350 AAHAQLSALSASVA--ATLPPSDT--AGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKI 405
Query: 304 VRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352
+RD T +CKG+ FV M+NY EA A+ SLNG L + LQV FK+ P
Sbjct: 406 LRD-LTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSSTP 453
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 182/371 (49%), Positives = 237/371 (63%)
Query: 9 NTTQSHRSTYQSDVN---EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
NT + S Q+ N E +NLIVNY+PQTMT++E++ LFSSVGE+ES KLIRDK+
Sbjct: 128 NTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQV 187
Query: 66 -------------QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKR 112
QSLGYGFVNY R +DAE+A+ LNGL+LQNK+IKVS+ARPSS+AIK
Sbjct: 188 YIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKG 247
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
ANLYVSGLPK MTQ++LE +F P+G IITSRIL + A + ++ KG+G
Sbjct: 248 ANLYVSGLPKTMTQQELEAIFAPFGAIITSRIL--QNAGNDTQT------------KGVG 293
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXXXXXXXX 232
F+RF++ EA A+ LNGT P ++PI VKF+N+P
Sbjct: 294 FIRFDKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNPQLVRRI 353
Query: 233 XXXXXGNPLHHSARFKFAPLTADLLNNSMLPP------------KSLHGSGWCIFVYNLA 280
P++ +F+P+ D+L+ MLP S G + IF+YNLA
Sbjct: 354 GGAMH-TPVNKGLA-RFSPMAGDMLD-VMLPNGLGAAAAAATTLASGPGGAYPIFIYNLA 410
Query: 281 PETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340
PETE+ LWQLFGPFGAVQ+VK+V+DP T +CKG+GFV MTNYDEA AI++LNGY +G+
Sbjct: 411 PETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGN 470
Query: 341 RLLQVSFKTHK 351
R+LQVSFKT+K
Sbjct: 471 RVLQVSFKTNK 481
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 169/354 (47%), Positives = 220/354 (62%)
Query: 9 NTTQSHRSTYQSDVNE-QNSNLIVNYVPQTMTQEEL--QHLFSSVGEVESCKLIRDKTTA 65
N TQ + + E ++ L+ + + +E LF ++S ++ K
Sbjct: 59 NMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSLFEKWRPLDSEVIVLGKGW- 117
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
QSLGYGFVNY +DAE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MT
Sbjct: 118 QSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMT 177
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q++LE LF YG IITSRIL D+ V+G IS+G+GF+RF++ IEAE A
Sbjct: 178 QKELEQLFSQYGRIITSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEA 222
Query: 186 MQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXXXX-----XXXXXXXXXGNP 240
++ LNG P GA+EPITVKFAN+P N
Sbjct: 223 IKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNL 282
Query: 241 LH--HSARFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGA 297
L+ + + +F+P+T D + + + + G+GWCIFVYNLAP+ ++++LWQ+FGPFGA
Sbjct: 283 LNMAYGVKSRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGA 342
Query: 298 VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
V NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LGDR+LQVSFKT+K
Sbjct: 343 VTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 396
Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
Identities = 76/206 (36%), Positives = 112/206 (54%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN---YYR 77
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T F + + +
Sbjct: 43 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFREYFTDSSLFEK 102
Query: 78 TEDAERAIIELNGLKLQNKSIK-VSYARP--SSEAIKRAN--------LYVS-GLPKHMT 125
+ +I L G Q+ V+Y P + +AI N + VS P +
Sbjct: 103 WRPLDSEVIVL-GKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSAS 161
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSG--TPEIPQISKGIGFVRFNQHIEAE 183
D +T + L +++ S+ R S ++ IS+G+GF+RF++ IEAE
Sbjct: 162 IRDANLYVSGLPKTMTQKEL-EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 220
Query: 184 HAMQELNGTIPEGASEPITVKFANSP 209
A++ LNG P GA+EPITVKFAN+P
Sbjct: 221 EAIKGLNGQKPPGATEPITVKFANNP 246
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 118/189 (62%), Positives = 145/189 (76%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
TSRIL D+ V+G IS+G+GF+RF++ IEAE A++ LNG P GA+EP
Sbjct: 153 TSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEP 197
Query: 201 ITVKFANSP 209
ITVKFAN+P
Sbjct: 198 ITVKFANNP 206
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 100/191 (52%), Positives = 128/191 (67%)
Query: 163 EIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXX 222
++ IS+G+GF+RF++ IEAE A++ LNG P GA+EPITVKFAN+P
Sbjct: 160 QVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLY 219
Query: 223 XXXXXXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLA 280
PL A RF+F+P+T D + + + + G+GWCIFVYNLA
Sbjct: 220 QSPNRRYP--------GPLAQQAQRFRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLA 271
Query: 281 PETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340
P+ ++++LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LGD
Sbjct: 272 PDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 331
Query: 341 RLLQVSFKTHK 351
R+LQVSFKT+K
Sbjct: 332 RVLQVSFKTNK 342
Score = 147 (56.8 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 178 EAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAIL 215
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 116/187 (62%), Positives = 144/187 (77%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
++ +NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE
Sbjct: 40 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 99
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG IITS
Sbjct: 100 KAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITS 159
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
RIL D+ V+G +S+G+GF+RF++ IEAE A++ LNG P GA+EPIT
Sbjct: 160 RILVDQ---------VTG------VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPIT 204
Query: 203 VKFANSP 209
VKFAN+P
Sbjct: 205 VKFANNP 211
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 103/191 (53%), Positives = 131/191 (68%)
Query: 163 EIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXX 222
++ +S+G+GF+RF++ IEAE A++ LNG P GA+EPITVKFAN+P
Sbjct: 165 QVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLY 224
Query: 223 XXXXXXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNNSMLPPKSLH-GSGWCIFVYNLA 280
PLHH A RF+F+P+T D + + + H G+GWCIFVYNL+
Sbjct: 225 QSPNRRYP--------GPLHHQAQRFRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLS 276
Query: 281 PETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGD 340
P+++++VLWQLFGPFGAV NVKV+RD T KCKGFGFV MTNYDEA AI SLNGY LGD
Sbjct: 277 PDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD 336
Query: 341 RLLQVSFKTHK 351
R+LQVSFKT+K
Sbjct: 337 RVLQVSFKTNK 347
Score = 148 (57.2 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 123 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI 182
Query: 80 DAERAIIELNGLKLQNKS--IKVSYARPSSEAIKRANL 115
+AE AI LNG K + I V +A S+ +A L
Sbjct: 183 EAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALL 220
Score = 90 (36.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 28/103 (27%), Positives = 49/103 (47%)
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
NG N++ ++ + NL V+ LP++MTQE+ +LF G I + +++ DK
Sbjct: 20 NGPSSNNRNCPSPMQTGAATDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK 79
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ G GFV + +AE A+ LNG
Sbjct: 80 ITGQSL---------------GYGFVNYIDPKDAEKAINTLNG 107
Score = 72 (30.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L L QLF +G + +++ D T +G GF+ EA AI+ L
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 334 NG 335
NG
Sbjct: 192 NG 193
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
Identities = 111/205 (54%), Positives = 147/205 (71%)
Query: 5 EEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT 64
+E+Y+ + + ++ + +NLIVNY+PQ M+Q+EL+ LFSS+GEVES KLIRDK
Sbjct: 12 KEVYDMSNGYEDHMADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVA 71
Query: 65 AQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHM 124
SLGYGFVNY DAERAI LNGL+LQ+K+IKVSYARPSS++IK ANLY+SGLPK M
Sbjct: 72 GHSLGYGFVNYLNPNDAERAISTLNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTM 131
Query: 125 TQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184
TQ+D+E +F YG II SR+L D+ SG +S+G+ F+RF++ EAE
Sbjct: 132 TQKDVEEMFGRYGRIINSRVLVDQ---------ASG------LSRGVAFIRFDKRAEAED 176
Query: 185 AMQELNGTIPEGASEPITVKFANSP 209
A+++LNG P GA+E +TVKFA SP
Sbjct: 177 AIKDLNGQKPPGAAEQMTVKFAASP 201
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 92/189 (48%), Positives = 122/189 (64%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+++LNG P GA+E +TVKFA SP
Sbjct: 159 LSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAAEQMTVKFAASPNQVKNTQVIPQVYHQQS 218
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNNSM---LPPKSLHGSGWCIFVYNLAPE 282
G P+HH A RF+F+P++ D ++ +P S SGWCIF+YNL +
Sbjct: 219 RRF--------GGPVHHQAQRFRFSPMSVDHMSGMSGVNVPGNS--SSGWCIFIYNLGQD 268
Query: 283 TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRL 342
++ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MT+Y+EA AI SLNGY LGD++
Sbjct: 269 ADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLNGYRLGDKI 328
Query: 343 LQVSFKTHK 351
LQVSFKT K
Sbjct: 329 LQVSFKTSK 337
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 108/183 (59%), Positives = 137/183 (74%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK SLGYGFVNY +DAERAI
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAIN 79
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
LNGL+LQ+K+IKVS ARPSSE+IK ANLY+SGLP+ MTQ+D+E++F P+G II SR+L
Sbjct: 80 TLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLV 139
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
D+ +G +S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA
Sbjct: 140 DQ---------ATG------LSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFA 184
Query: 207 NSP 209
+P
Sbjct: 185 ANP 187
Score = 452 (164.2 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 92/187 (49%), Positives = 118/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 145 LSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNKNMALLSQLCHSPA 204
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D +++ S + S SGWCIF+YNL + +
Sbjct: 205 RRF--------GGPVHHQAQRFRFSPMGVDHMSSISGVNVASSASSGWCIFIYNLGQDAD 256
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD+ LQ
Sbjct: 257 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQ 316
Query: 345 VSFKTHK 351
V FKT K
Sbjct: 317 VFFKTSK 323
Score = 121 (47.7 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 25/81 (30%), Positives = 48/81 (59%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+++NL ++ +P+TMTQ++++ +F G + + +++ D+ T S G F+ + + +AE A
Sbjct: 104 KDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEA 163
Query: 85 IIELNGLKLQNKS--IKVSYA 103
I NG K S I V +A
Sbjct: 164 IASFNGHKPPGSSEPITVKFA 184
Score = 100 (40.3 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISK 169
I R NL V+ LP++MTQ++L +LF G + +++++ DK+A ++
Sbjct: 17 IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL--------------- 61
Query: 170 GIGFVRFNQHIEAEHAMQELNG 191
G GFV + +AE A+ LNG
Sbjct: 62 GYGFVNYLNAKDAERAINTLNG 83
Score = 72 (30.4 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 291 LFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY 336
+F PFG + N +V+ D T +G F+ EA AI S NG+
Sbjct: 125 MFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGH 170
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 113/204 (55%), Positives = 145/204 (71%)
Query: 7 MYNTTQSHRST-YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + + D+ +NLIVNY+PQ MTQEEL+ LFSS+GE+ES KLIRDK
Sbjct: 1 MSNGYEDHMAEDCRDDIGR--TNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAG 58
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP+ MT
Sbjct: 59 HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMT 118
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q+D+E++F P+G II SR+L D+ +G +S+G+ F+RF++ EAE A
Sbjct: 119 QKDVEDMFSPFGRIINSRVLVDQ---------TTG------LSRGVAFIRFDKRSEAEEA 163
Query: 186 MQELNGTIPEGASEPITVKFANSP 209
+ NG P G+SEPITVKFA +P
Sbjct: 164 ITSFNGHKPPGSSEPITVKFAANP 187
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 92/187 (49%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 204
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D ++ S + SGWCIF+YNL + +
Sbjct: 205 RRF--------GGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDAD 256
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD++LQ
Sbjct: 257 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEASMAIASLNGYRLGDKILQ 316
Query: 345 VSFKTHK 351
VSFKT+K
Sbjct: 317 VSFKTNK 323
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 114/213 (53%), Positives = 149/213 (69%)
Query: 5 EEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK-- 62
+E+Y+ + + ++ +NLI+NY+PQ M+QEEL+ LFSS+GEVES KLIRDK
Sbjct: 34 QEVYDMPNGYEDPMGDEPSDAKTNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMA 93
Query: 63 ------TTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLY 116
T SLGYGFVNY DAERAI LNGL+LQ+K+IKVSYARPSS+ IK ANLY
Sbjct: 94 GMSAHHTLGHSLGYGFVNYVNPSDAERAINTLNGLRLQSKTIKVSYARPSSDGIKDANLY 153
Query: 117 VSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRF 176
+SGLPK MTQ+++E++F YG II SRIL D+ SG +S+G+ F+RF
Sbjct: 154 ISGLPKTMTQKNVEDMFTQYGRIINSRILVDQ---------ASG------LSRGVAFIRF 198
Query: 177 NQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
++ EAE A+++LNG+ P GASEPITVKFA +P
Sbjct: 199 DKRSEAEEAIKDLNGSKPSGASEPITVKFAANP 231
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 95/186 (51%), Positives = 122/186 (65%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+++LNG+ P GASEPITVKFA +P
Sbjct: 189 LSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAANPNQSKNSQLLSQLYHTQS 248
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETED 285
G P+HH RF+F+P++ D +SM S SGWCIFVYNL + ++
Sbjct: 249 RRF--------GGPVHHQPQRFRFSPMSVDHSVSSMNVASS-SSSGWCIFVYNLGQDADE 299
Query: 286 NVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345
+LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD++LQV
Sbjct: 300 GILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQV 359
Query: 346 SFKTHK 351
SFK+ K
Sbjct: 360 SFKSSK 365
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 112/204 (54%), Positives = 144/204 (70%)
Query: 7 MYNTTQSHRSTY-QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + D+ +NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK
Sbjct: 1 MSNGYEDHMDDVCRDDIGR--TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 58
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVS+ARPSSE IK ANLY+SGLP+ MT
Sbjct: 59 HSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMT 118
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q+D+E++F P+G II SR+L D+ +G +S+G+ F+RF++ EAE A
Sbjct: 119 QKDVEDMFLPFGHIINSRVLVDQ---------ATG------LSRGVAFIRFDKRSEAEEA 163
Query: 186 MQELNGTIPEGASEPITVKFANSP 209
+ NG P G+SEPITVKFA +P
Sbjct: 164 IASFNGHKPPGSSEPITVKFAANP 187
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 93/187 (49%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 145 LSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQSKNMALLSQICHSPA 204
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D +++ S + S SGWCIF+YNL + +
Sbjct: 205 RRF--------GGPVHHQAQRFRFSPMGVDHMSSISSVNVASSASSGWCIFIYNLGQDAD 256
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD+ LQ
Sbjct: 257 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQ 316
Query: 345 VSFKTHK 351
VSFKT K
Sbjct: 317 VSFKTSK 323
Score = 112 (44.5 bits), Expect = 0.00092, P = 0.00092
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 43 LQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102
L +F G V + K+IRD T + G+GFV E+A AI LNG +L +K+++VS+
Sbjct: 260 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 319
Query: 103 ARPSS 107
S
Sbjct: 320 KTSKS 324
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 113/204 (55%), Positives = 144/204 (70%)
Query: 7 MYNTTQSHRST-YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + + D+ +NLIVNY+PQ MTQEEL+ LFSS+GEVES KLIRDK
Sbjct: 1 MSNGYEDHMAEDCRDDIGR--TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAG 58
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP+ MT
Sbjct: 59 HSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMT 118
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q+D+E++F +G II SR+L D+ +G +S+G+ F+RF++ EAE A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQ---------TTG------LSRGVAFIRFDKRSEAEEA 163
Query: 186 MQELNGTIPEGASEPITVKFANSP 209
+ NG P G+SEPITVKFA +P
Sbjct: 164 ITSFNGHKPPGSSEPITVKFAANP 187
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 92/187 (49%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPA 204
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D ++ S + SGWCIF+YNL + +
Sbjct: 205 RRF--------GGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLGQDAD 256
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD++LQ
Sbjct: 257 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQ 316
Query: 345 VSFKTHK 351
VSFKT+K
Sbjct: 317 VSFKTNK 323
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 113/204 (55%), Positives = 144/204 (70%)
Query: 7 MYNTTQSHRST-YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + + D+ +NLIVNY+PQ MTQEEL+ LFSS+GEVES KLIRDK
Sbjct: 1 MSNGYEDHMAEDCRDDIGR--TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAG 58
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP+ MT
Sbjct: 59 HSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMT 118
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q+D+E++F +G II SR+L D+ +G +S+G+ F+RF++ EAE A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQ---------TTG------LSRGVAFIRFDKRSEAEEA 163
Query: 186 MQELNGTIPEGASEPITVKFANSP 209
+ NG P G+SEPITVKFA +P
Sbjct: 164 ITSFNGHKPPGSSEPITVKFAANP 187
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 92/187 (49%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNMALLSQLYHSPA 204
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D ++ S + SGWCIF+YNL + +
Sbjct: 205 RRF--------GGPVHHQAQRFRFSPMGVDHMSGISGVNVPGNASSGWCIFIYNLGQDAD 256
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD++LQ
Sbjct: 257 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQ 316
Query: 345 VSFKTHK 351
VSFKT+K
Sbjct: 317 VSFKTNK 323
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 112/204 (54%), Positives = 145/204 (71%)
Query: 7 MYNTTQSHRST-YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + + D+ +NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK
Sbjct: 1 MSNGYEDHMAEDCRDDIGR--TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 58
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP++MT
Sbjct: 59 HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRNMT 118
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q+D+E++F +G II SR+L D+ +G +S+G+ F+RF++ EAE A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQ---------TTG------LSRGVAFIRFDKRSEAEEA 163
Query: 186 MQELNGTIPEGASEPITVKFANSP 209
+ NG P G+SEPITVKFA +P
Sbjct: 164 ITSFNGHKPPGSSEPITVKFAANP 187
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 92/187 (49%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 204
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D ++ S + SGWCIF+YNL + +
Sbjct: 205 RRF--------GGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDAD 256
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD++LQ
Sbjct: 257 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQ 316
Query: 345 VSFKTHK 351
VSFKT+K
Sbjct: 317 VSFKTNK 323
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
Identities = 112/204 (54%), Positives = 144/204 (70%)
Query: 7 MYNTTQSHRST-YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + + D+ +NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK
Sbjct: 1 MSNGYEDHMAEDCRDDIGR--TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 58
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP+ MT
Sbjct: 59 HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRSMT 118
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q+D+E++F +G II SR+L D+ +G +S+G+ F+RF++ EAE A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQ---------TTG------LSRGVAFIRFDKRSEAEEA 163
Query: 186 MQELNGTIPEGASEPITVKFANSP 209
+ NG P G+SEPITVKFA +P
Sbjct: 164 ITNFNGHKPPGSSEPITVKFAANP 187
Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
Identities = 92/187 (49%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITNFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLCHSPA 204
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D ++ S + SGWCIF+YNL + +
Sbjct: 205 RRF--------GGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDAD 256
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD++LQ
Sbjct: 257 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQ 316
Query: 345 VSFKTHK 351
VSFKT+K
Sbjct: 317 VSFKTNK 323
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 112/204 (54%), Positives = 144/204 (70%)
Query: 7 MYNTTQSHRST-YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + + D+ +NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK
Sbjct: 9 MSNGYEDHMAEDCRDDIGR--TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 66
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP+ MT
Sbjct: 67 HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMT 126
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q+D+E++F +G II SR+L D+ +G +S+G+ F+RF++ EAE A
Sbjct: 127 QKDVEDMFSRFGRIINSRVLVDQ---------TTG------LSRGVAFIRFDKRSEAEEA 171
Query: 186 MQELNGTIPEGASEPITVKFANSP 209
+ NG P G+SEPITVKFA +P
Sbjct: 172 ITSFNGHKPPGSSEPITVKFAANP 195
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 92/187 (49%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 153 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 212
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D ++ S + SGWCIF+YNL + +
Sbjct: 213 RRF--------GGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDAD 264
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD++LQ
Sbjct: 265 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQ 324
Query: 345 VSFKTHK 351
VSFKT+K
Sbjct: 325 VSFKTNK 331
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 112/204 (54%), Positives = 144/204 (70%)
Query: 7 MYNTTQSHRST-YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + + D+ +NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK
Sbjct: 28 MSNGYEDHMAEDCRGDIGR--TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 85
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP+ MT
Sbjct: 86 HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMT 145
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q+D+E++F +G II SR+L D+ +G +S+G+ F+RF++ EAE A
Sbjct: 146 QKDVEDMFSRFGRIINSRVLVDQ---------TTG------LSRGVAFIRFDKRSEAEEA 190
Query: 186 MQELNGTIPEGASEPITVKFANSP 209
+ NG P G+SEPITVKFA +P
Sbjct: 191 ITSFNGHKPPGSSEPITVKFAANP 214
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 92/187 (49%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 172 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 231
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D ++ S + SGWCIF+YNL + +
Sbjct: 232 RRF--------GGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDAD 283
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD++LQ
Sbjct: 284 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQ 343
Query: 345 VSFKTHK 351
VSFKT+K
Sbjct: 344 VSFKTNK 350
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 112/204 (54%), Positives = 144/204 (70%)
Query: 7 MYNTTQSHRST-YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + + D+ +NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK
Sbjct: 1 MSNGYEDHMAEDCRGDIGR--TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 58
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVSYARPSSE IK ANLY+SGLP+ MT
Sbjct: 59 HSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMT 118
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
Q+D+E++F +G II SR+L D+ +G +S+G+ F+RF++ EAE A
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQ---------TTG------LSRGVAFIRFDKRSEAEEA 163
Query: 186 MQELNGTIPEGASEPITVKFANSP 209
+ NG P G+SEPITVKFA +P
Sbjct: 164 ITSFNGHKPPGSSEPITVKFAANP 187
Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
Identities = 92/187 (49%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 145 LSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPA 204
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D ++ S + SGWCIF+YNL + +
Sbjct: 205 RRF--------GGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDAD 256
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD++LQ
Sbjct: 257 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQ 316
Query: 345 VSFKTHK 351
VSFKT+K
Sbjct: 317 VSFKTNK 323
>UNIPROTKB|F1PPC3 [details] [associations]
symbol:F1PPC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000077064 EMBL:AAEX03002929
ProteinModelPortal:F1PPC3 Ensembl:ENSCAFT00000037406 Uniprot:F1PPC3
Length = 335
Score = 365 (133.5 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 80/185 (43%), Positives = 105/185 (56%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+ F+ EAE A LNG P G+SEP TV+F N P
Sbjct: 155 LSRGVAFIWFDTWSEAEGASTSLNGHKPPGSSEPTTVRFGN-PNRNQPVALLSQRYRSPA 213
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETED 285
G P+ A RF+F+P+ D S + SGWCIF+YNL +T +
Sbjct: 214 RWF--------GGPVRRQAQRFRFSPVGVDTSGLSGVSVLGDASSGWCIFIYNLGRDTHE 265
Query: 286 NVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQV 345
+LWQ+FGPFGAV NVKV+RD T K KGFGFV MTN++EA A+ SLN LGD++L +
Sbjct: 266 GILWQMFGPFGAVTNVKVIRDFSTNKHKGFGFVTMTNHEEAAMAVASLNSSRLGDKILFI 325
Query: 346 SFKTH 350
SFK +
Sbjct: 326 SFKIY 330
Score = 161 (61.7 bits), Expect = 8.7e-49, Sum P(2) = 8.7e-49
Identities = 48/122 (39%), Positives = 70/122 (57%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NL VNY P+ +TQ+E + FSS+G++ + + AQ G+ V++ RA
Sbjct: 37 TNLTVNYRPRGVTQDEARSPFSSIGDMTLQNPLGVRQRAQP-GHHAVSH--VPQGPRATT 93
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
NGL+LQ+K+IKVS A PS E IK ANL GLP+ +T+ E + +G SR L
Sbjct: 94 P-NGLRLQSKAIKVSSA-PSLEVIKDANLRSGGLPQTVTRT--EGVLPRFGGATNSRGLA 149
Query: 147 DK 148
D+
Sbjct: 150 DQ 151
Score = 59 (25.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 295 FGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGY 336
FG N + + D T +G F+ + EA A SLNG+
Sbjct: 139 FGGATNSRGLADQTTGLSRGVAFIWFDTWSEAEGASTSLNGH 180
Score = 53 (23.7 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 103 ARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTP 162
A + I R NL V+ P+ +TQ++ + F G + L + ++ VS P
Sbjct: 27 AEACGDDIGRTNLTVNYRPRGVTQDEARSPFSSIGDMTLQNPLGVRQRAQPGHHAVSHVP 86
Query: 163 EIPQ 166
+ P+
Sbjct: 87 QGPR 90
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 105/171 (61%), Positives = 130/171 (76%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ + +NLIVNY+PQ MTQEEL+ LF S+GE+ESCKL+RDK T QSLGYGFVNY +D
Sbjct: 33 NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKD 92
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
AE+AI LNGL+LQ K+IKVSYARPSS +I+ ANLYVSGLPK MTQ++LE LF YG II
Sbjct: 93 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRII 152
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
TSRIL D+ V+G IS+G+GF+RF++ IEAE A++ LNG
Sbjct: 153 TSRILVDQ---------VTG------ISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 138 (53.6 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S + +++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + +
Sbjct: 118 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRI 177
Query: 80 DAERAIIELNG 90
+AE AI LNG
Sbjct: 178 EAEEAIKGLNG 188
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 112/215 (52%), Positives = 145/215 (67%)
Query: 7 MYNTTQSHRSTY-QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
M N + H + D+ +NLIVNY+PQ MTQ+EL+ LFSS+GEVES KLIRDK
Sbjct: 1 MSNGYEDHMDDVCRDDIGR--TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAG 58
Query: 66 -----------QSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRAN 114
SLGYGFVNY +DAERAI LNGL+LQ+K+IKVS+ARPSSE+IK AN
Sbjct: 59 FEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDAN 118
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
LY+SGLP+ MTQ+D+E++F P+G II SR+L D+ +G +S+G+ F+
Sbjct: 119 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQ---------ATG------LSRGVAFI 163
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 164 RFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANP 198
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 94/187 (50%), Positives = 119/187 (63%)
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPXXXXXXXXXXXXXXXXX 226
+S+G+ F+RF++ EAE A+ NG P G+SEPITVKFA +P
Sbjct: 156 LSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPITVKFAANPNQNKNVALLSQICHSPA 215
Query: 227 XXXXXXXXXXXGNPLHHSA-RFKFAPLTADLLNN-SMLPPKSLHGSGWCIFVYNLAPETE 284
G P+HH A RF+F+P+ D +++ S + S SGWCIFVYNL + +
Sbjct: 216 RRF--------GGPVHHQAQRFRFSPMGVDHMSSISSVNVASSATSGWCIFVYNLGQDAD 267
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ +LWQ+FGPFGAV NVKV+RD T KCKGFGFV MTNY+EA AI SLNGY LGD+ LQ
Sbjct: 268 EGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQ 327
Query: 345 VSFKTHK 351
VSFKT K
Sbjct: 328 VSFKTSK 334
Score = 112 (44.5 bits), Expect = 0.00098, P = 0.00097
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 43 LQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102
L +F G V + K+IRD T + G+GFV E+A AI LNG +L +K+++VS+
Sbjct: 271 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVSF 330
Query: 103 ARPSS 107
S
Sbjct: 331 KTSKS 335
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 81/187 (43%), Positives = 120/187 (64%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
+D N+NLIVNY+PQ MT EL LF ++G + +C+++RD T S GY FV++
Sbjct: 118 NDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEM 177
Query: 80 DAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
D++RAI LNG+ ++NK +KVSYARP E+IK NLYV+ LP+ +T + L+ +F YG+I
Sbjct: 178 DSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSI 237
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
+ IL DK+ +G P +G+ FVR+N+ EA+ A+ LN IPEG S+
Sbjct: 238 VQKNILRDKL---------TGRP------RGVAFVRYNKREEAQEAISALNNVIPEGGSQ 282
Query: 200 PITVKFA 206
P++V+ A
Sbjct: 283 PLSVRLA 289
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 84/198 (42%), Positives = 121/198 (61%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSL 68
N+ + Q D +NLI+NY+PQ MT EL +LFS G + +CK++RD T S
Sbjct: 76 NSAGQQQQMQQVD-RTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSF 134
Query: 69 GYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQED 128
GYGFV+Y D+E AI +LNG ++NK +KVSYARP ++IK NLYV L +++ +
Sbjct: 135 GYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYARPGGQSIKDTNLYVINLSRNINDDM 194
Query: 129 LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
L+ +F PYG I+ IL DK+ +G P +G+ FVR+N+ EA+ A++
Sbjct: 195 LDRIFSPYGLIVQRNILRDKL---------TGRP------RGVAFVRYNKREEAQEAIKA 239
Query: 189 LNGTIPEGASEPITVKFA 206
LN T+PEG S+PI V+ A
Sbjct: 240 LNNTVPEGGSQPIWVRLA 257
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 188 (71.2 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 38/100 (38%), Positives = 61/100 (61%)
Query: 252 LTADLLNNSMLPPKSLHGSGWC---IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQ 308
L ++ +S PP G ++VYNL + +D++L++LF P GA+ +VK+VRD
Sbjct: 359 LPNSMIGSSSQPPPGGKNPGTDPTNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQT 418
Query: 309 TYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348
T C+G+GFV M + ++ AI S+NG +G + + VSFK
Sbjct: 419 TQVCRGYGFVRMVSLADSYSAINSINGVQVGGKTISVSFK 458
Score = 187 (70.9 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 37/107 (34%), Positives = 64/107 (59%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
TT + ST S + + NL ++++P T T + L+ +FS+ GE++SC+++ D T S G
Sbjct: 82 TTMTQTSTSTSSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRG 141
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRAN 114
+GFV + A+ AI +NG K++NK++ V +A P+S +N
Sbjct: 142 FGFVKFKDVASAQYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSN 188
Score = 135 (52.6 bits), Expect = 2.9e-22, Sum P(2) = 2.9e-22
Identities = 38/119 (31%), Positives = 59/119 (49%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSL 68
N ++ +T D + ++N+ + +P + +L LFS+ GEV KL+ D TT S
Sbjct: 201 NNNSNNNNTNNIDEQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASR 260
Query: 69 GYGFVNYYRTEDAERAIIELNGLKLQN--KSIKVSYARPSSEAI-KRANLYVSGLPKHM 124
G G V Y T+ A A+ LNG LQ+ K + V +A E KR L + ++M
Sbjct: 261 GQGLVRYIDTQSAINAVKSLNGFILQDPEKPLIVRFADNEDEKKQKRQKLQQKQVRQNM 319
Score = 133 (51.9 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NL V +P L LFS G + S K++RD+TT GYGFV D+ AI
Sbjct: 382 TNLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADSYSAIN 441
Query: 87 ELNGLKLQNKSIKVSYAR 104
+NG+++ K+I VS+ +
Sbjct: 442 SINGVQVGGKTISVSFKK 459
Score = 102 (41.0 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
N+++ GLP + L LF YG ++ S++L D + N S+G G
Sbjct: 220 NVFIRGLPIEFDKNQLSELFSAYGEVVESKLLID--ITTNA-------------SRGQGL 264
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
VR+ A +A++ LNG I + +P+ V+FA++
Sbjct: 265 VRYIDTQSAINAVKSLNGFILQDPEKPLIVRFADN 299
Score = 96 (38.9 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ L E + N L +LF +G V K++ D T +G G V + A+ A++SL
Sbjct: 221 VFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSAINAVKSL 280
Query: 334 NGYALGD 340
NG+ L D
Sbjct: 281 NGFILQD 287
Score = 93 (37.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 106 SSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIP 165
SS + NL++S LP T + L ++F +G I + R++ D N +G
Sbjct: 92 SSNSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDL----N-----TG----- 137
Query: 166 QISKGIGFVRFNQHIEAEHAMQELNG 191
+S+G GFV+F A++A+ +NG
Sbjct: 138 -LSRGFGFVKFKDVASAQYAINSMNG 162
Score = 70 (29.7 bits), Expect = 2.3e-15, Sum P(2) = 2.3e-15
Identities = 25/91 (27%), Positives = 38/91 (41%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
NLYV LP L LF P G I + +I+ D+ Q+ +G GF
Sbjct: 383 NLYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTT---------------QVCRGYGF 427
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
VR ++ A+ +NG G + ++ K
Sbjct: 428 VRMVSLADSYSAINSINGVQVGGKTISVSFK 458
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 228 (85.3 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 61/205 (29%), Positives = 107/205 (52%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSL 68
N + + + ++ +N+ V ++P E+L++LFS G+V S K++ D S
Sbjct: 91 NNNNNSVNNKELELERDQTNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPK-GNSY 149
Query: 69 GYGFVNYYRTEDAERAIIELNGLKLQNKSI--KVS--YARPSSEAIKRANLYVSGLPKHM 124
GYGFV + +++ AI EL+G + QNK + ++S Y +S+ NL++ LP +
Sbjct: 150 GYGFVRFSSPQESAAAIEELDGYQYQNKKLLCRLSNLYTNLNSKYPSN-NLFIKPLPYDV 208
Query: 125 TQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184
T + L LF P+G II +++ D +G SK GFVRF+ ++A
Sbjct: 209 TDDQLRKLFEPFGKIIECKVMLDH----------NGQ------SKFAGFVRFSSELDASK 252
Query: 185 AMQELNGT-IPEGASEPITVKFANS 208
A+ +NG I + + P+ VK+A++
Sbjct: 253 AIDAMNGVRINKDSGYPLVVKYADT 277
Score = 165 (63.1 bits), Expect = 7.3e-30, Sum P(2) = 7.3e-30
Identities = 32/84 (38%), Positives = 52/84 (61%)
Query: 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
H + +FV++L P +D+ L+QLF FG +Q+V+V+ D T + KG+GFV DEA+
Sbjct: 765 HTNDTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEAL 824
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK 351
+ +NG+ +G + L+V K K
Sbjct: 825 KCQKEMNGFRIGSKFLKVKLKNEK 848
Score = 149 (57.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
++NL V ++P + L LFS G+++S ++I DK T ++ GYGFV +Y+T++A +
Sbjct: 768 DTNLFVFHLPPFVDDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQ 827
Query: 86 IELNGLKLQNKSIKV 100
E+NG ++ +K +KV
Sbjct: 828 KEMNGFRIGSKFLKV 842
Score = 37 (18.1 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVN 32
N ++ + ++ N N+N+I+N
Sbjct: 612 NNNNNNNNNNNNNNNYNNNNVIIN 635
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 229 (85.7 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 59/186 (31%), Positives = 101/186 (54%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
++ L V +P++ +EE+++LF+++ +ES LI++KTT + G FV+ E+A+RAI
Sbjct: 2 STKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAI 61
Query: 86 IEL-NGLKLQN--KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+L N K Q +++V YA E + + L+V LP+ +E + LF P+G +
Sbjct: 62 EQLHNSKKFQGVLNNLQVKYADSEQEKLA-SKLFVGMLPRSYEEEQIRELFEPHGVV--- 117
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
+C + G P SKG GF++F+ A A+ LNG +G+ P+
Sbjct: 118 EDIC----------ILRG-PNSE--SKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLV 164
Query: 203 VKFANS 208
VKFA++
Sbjct: 165 VKFADT 170
Score = 138 (53.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 33/87 (37%), Positives = 44/87 (50%)
Query: 22 VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA 81
V Q SNL V +P + +L LF G V S K+ DK T S G+GFV+Y A
Sbjct: 398 VGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASA 457
Query: 82 ERAIIELNGLKLQNKSIKVSYARPSSE 108
AI L+G + K +KVS + S +
Sbjct: 458 NLAISNLHGQMMAGKKLKVSLKQTSGQ 484
Score = 127 (49.8 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
Identities = 33/84 (39%), Positives = 44/84 (52%)
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+S+ G +FVYN+ DN L LF +G V + KV D T KGFGFV N
Sbjct: 396 QSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPA 455
Query: 325 EAVFAIQSLNGYALGDRLLQVSFK 348
A AI +L+G + + L+VS K
Sbjct: 456 SANLAISNLHGQMMAGKKLKVSLK 479
Score = 45 (20.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 3 KHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQE 41
+ + + QSH+ ++QS + +VN P M Q+
Sbjct: 198 QQQPSHQQQQSHQQSFQSQYQQP----VVNQFPPKMNQQ 232
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
Identities = 67/179 (37%), Positives = 100/179 (55%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NLI+NY+PQ MT+ EL LFS GE+ K+IR + T S YGFV+Y A A+
Sbjct: 41 TNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAAAVN 100
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
++G + + K +KV++ARPS ++LYV LP +M ++ + LF YG I+ +L
Sbjct: 101 GMDGYETRGKRLKVAFARPSEYESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLR 160
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKF 205
K N RS +G+ F++F +AE A ++ + EGAS P+TVKF
Sbjct: 161 HKF---NNRS------------RGVAFLQFELVRDAEVAKYGMDRYMIEGASRPLTVKF 204
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 195 (73.7 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 59/185 (31%), Positives = 90/185 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ +F G++ +I+DK T G F+ Y E A + A+
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S R L+V L K T ED+ +F P+G I +L
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGEDR-KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVL 127
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
R GT SKG FV+F H EA+ A+ L+G T+P GAS + V
Sbjct: 128 ---------RG-PDGT------SKGCAFVKFQTHTEAQAAINALHGSRTLP-GASSSLVV 170
Query: 204 KFANS 208
KFA++
Sbjct: 171 KFADT 175
Score = 145 (56.1 bits), Expect = 3.4e-24, Sum P(2) = 3.4e-24
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A AI
Sbjct: 376 GCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAI 435
Query: 331 QSLNGYALGDRLLQVSFKTHK 351
Q++NG+ +G + L+V K K
Sbjct: 436 QAMNGFQIGMKRLKVQLKRPK 456
Score = 131 (51.2 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ N+ + ++PQ T E+ +F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 375 EGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAA 434
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 435 IQAMNGFQIGMKRLKVQLKRP 455
Score = 86 (35.3 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + N+++ LP+ T ++ +F P+G +I++++ D+ ++
Sbjct: 372 EGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ--------------- 416
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 417 SKCFGFVSFDNPGSAQAAIQAMNG 440
Score = 83 (34.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + T E+++ +F G ++ C ++R S G FV +
Sbjct: 88 SESRGEDRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPD-GTSKGCAFVKFQTHT 146
Query: 80 DAERAIIELNGLKL---QNKSIKVSYARPSSE 108
+A+ AI L+G + + S+ V +A E
Sbjct: 147 EAQAAINALHGSRTLPGASSSLVVKFADTEKE 178
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 207 (77.9 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 53/170 (31%), Positives = 88/170 (51%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
N++L V + +T +L F +G V + ++ RD T +SLGYG+VN+ +DA RAI
Sbjct: 35 NTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAI 94
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
ELN + L K I+V Y+ PS N+++ L + + + L + F +G I++ +
Sbjct: 95 QELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCK 154
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+ D SG SKG GFV++ A+ A+++LNG +
Sbjct: 155 VAVDS----------SGQ------SKGYGFVQYANEESAQKAIEKLNGML 188
Score = 206 (77.6 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
Identities = 56/170 (32%), Positives = 88/170 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FSS G + SCK+ D ++ QS GYGFV Y E A++AI +
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEK 183
Query: 88 LNGLKLQNKSIKVS-YAR-----PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
LNG+ L +K + V + R ++ K N+YV L + T +DL+N F YG I +
Sbjct: 184 LNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITS 243
Query: 142 SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ ++ D G + SKG GFV F +A A++ LNG
Sbjct: 244 AVVMKD------------GEGK----SKGFGFVNFENADDAARAVESLNG 277
Score = 166 (63.5 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 59/213 (27%), Positives = 101/213 (47%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQN-SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLI 59
++ +++Y R S N+ +N+ V + ++ T ++L++ F G++ S ++
Sbjct: 188 LLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVM 247
Query: 60 RDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANL-YVS 118
+D +S G+GFVN+ +DA RA+ LNG K +K V A+ SE + Y
Sbjct: 248 KDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQ 306
Query: 119 GLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSF--VSGTPEI--PQ-ISKGIGF 173
L + + NL+ + S + D+ E F V+ + + P SKG GF
Sbjct: 307 NLKEAADKFQSSNLY--VKNLDPS--ISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGF 362
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
V F EA AM +L+G + E S+P+ V A
Sbjct: 363 VAFATPEEATEAMSQLSGKMIE--SKPLYVAIA 393
Score = 134 (52.2 bits), Expect = 4.7e-24, Sum P(2) = 4.7e-24
Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NLA T D+ L FG +G + + V++D + K KGFGFV N D+A A++SL
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEG-KSKGFGFVNFENADDAARAVESL 275
Query: 334 NGYALGDR 341
NG+ D+
Sbjct: 276 NGHKFDDK 283
Score = 125 (49.1 bits), Expect = 4.1e-23, Sum P(2) = 4.1e-23
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL P D L ++F PFG V + KV+RDP KG GFV +EA A+ L
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTS-KGSGFVAFATPEEATEAMSQL 378
Query: 334 NGYALGDRLLQVSFKTHK 351
+G + + L V+ K
Sbjct: 379 SGKMIESKPLYVAIAQRK 396
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 31/95 (32%), Positives = 55/95 (57%)
Query: 15 RSTYQSDVNE-----QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
R Y+ ++ E Q+SNL V + +++ E+L+ +FS G V S K++RD S G
Sbjct: 301 RVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKG 359
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104
GFV + E+A A+ +L+G +++K + V+ A+
Sbjct: 360 SGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 191 (72.3 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 58/204 (28%), Positives = 105/204 (51%)
Query: 12 QSHRSTYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGY 70
QS + Q N+ + V ++P +M +E + +F+ G + +I+DK T S G
Sbjct: 2 QSLQQQQQQQFNQLGGFTVFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGC 61
Query: 71 GFVNYYRTEDAERAIIELN--GLKLQN--KSIKVSYARPSSEAIKRANLYVSGLPKHMTQ 126
F+ + E+A+ A+ N G L+N K ++V Y+ E ++R L++ G+ +
Sbjct: 62 AFITFSTKEEADNALNTTNESGTFLENMNKPLQVKYSDNEIEKMER-KLFI-GMLGTSDE 119
Query: 127 EDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAM 186
+ + LF YG I I+ +K G P KG GF++++ E+E+A+
Sbjct: 120 DQIRILFGNYGIIEDLNIVREK----------DGKP------KGYGFIKYSTRDESENAL 163
Query: 187 QELNG--TIPEGASEPITVKFANS 208
+E++G T+P G++ PI VKFA++
Sbjct: 164 REIDGKHTLP-GSNLPIIVKFADT 186
Score = 179 (68.1 bits), Expect = 2.5e-11, P = 2.5e-11
Identities = 38/104 (36%), Positives = 60/104 (57%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIR 60
MM+ + ++ Q + Q ++++L + Y+P T EEL+ LF+ G V S K+
Sbjct: 261 MMQGNQAFDYNQQQQQQQQQQQPNESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFI 320
Query: 61 DKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR 104
DK T QS +GFV+Y T+ A AI ELNG ++ K +KV++ R
Sbjct: 321 DKNTQQSKCFGFVSYDNTQSAIAAIQELNGRAIEGKKLKVNFKR 364
Score = 143 (55.4 bits), Expect = 5.4e-24, Sum P(2) = 5.4e-24
Identities = 34/78 (43%), Positives = 44/78 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y L D L QLF P+G V + KV D T + K FGFV N A+ AIQ L
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348
Query: 334 NGYALGDRLLQVSFKTHK 351
NG A+ + L+V+FK K
Sbjct: 349 NGRAIEGKKLKVNFKREK 366
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 216 (81.1 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 56/169 (33%), Positives = 91/169 (53%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + T+T +L F+ G+V S ++ RD TT +SLGYG+VNY +DA RA+
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 87 ELNGLKLQNKSIKVSYA-R-PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
ELN + L ++I+V Y+ R PS N+++ L K + + L F +G I++ ++
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKV 164
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
D SG SKG GFV+++ A+ A+ +LNG +
Sbjct: 165 AVDP----------SGQ------SKGYGFVQYDTDEAAQGAIDKLNGML 197
Score = 189 (71.6 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 55/170 (32%), Positives = 87/170 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK+ D + QS GYGFV Y E A+ AI +
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDK 192
Query: 88 LNGLKLQNKSIKVS-YAR-----PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
LNG+ L +K + V + PS E +K N+YV L + ++ E+L +F +G + T
Sbjct: 193 LNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFG-VTT 251
Query: 142 SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
S ++ +R G + SKG GFV F +A A+ LNG
Sbjct: 252 SCVI--------MRD---GEGK----SKGFGFVNFENSDDAARAVDALNG 286
Score = 167 (63.8 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 50/182 (27%), Positives = 87/182 (47%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + ++++ EEL +F G SC ++RD +S G+GFVN+ ++DA RA+
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGE-GKSKGFGFVNFENSDDAARAVD 282
Query: 87 ELNGLKLQNKSIKVSYARPSSEA-IKRANLYVSGLPKHMTQEDLENLF-RPYGTIITSRI 144
LNG +K V A+ SE + + L + + NL+ + +T
Sbjct: 283 ALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDK 342
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
L + A + + +S+G GFV F+ EA A+ E+NG + ++P+ V
Sbjct: 343 LREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGKMI--VTKPLYVA 400
Query: 205 FA 206
A
Sbjct: 401 LA 402
Score = 138 (53.6 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 34/101 (33%), Positives = 56/101 (55%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q SNL V + +++T ++L+ F+ G + SCK++RD + S G GFV + E+A RA
Sbjct: 325 QGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGV-SRGSGFVAFSTPEEATRA 383
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGL-PKHM 124
I E+NG + K + V+ A+ + R S + P +M
Sbjct: 384 ITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVNM 424
Score = 122 (48.0 bits), Expect = 6.3e-24, Sum P(2) = 6.3e-24
Identities = 26/68 (38%), Positives = 39/68 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL+ D L ++FG FG + ++RD + K KGFGFV N D+A A+ +L
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEG-KSKGFGFVNFENSDDAARAVDAL 284
Query: 334 NGYALGDR 341
NG D+
Sbjct: 285 NGKTFDDK 292
Score = 115 (45.5 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 27/78 (34%), Positives = 41/78 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D+ L + F PFG + + KV+RDP +G GFV + +EA AI +
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVS-RGSGFVAFSTPEEATRAITEM 387
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 388 NGKMIVTKPLYVALAQRK 405
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 211 (79.3 bits), Expect = 9.7e-24, Sum P(2) = 9.7e-24
Identities = 55/174 (31%), Positives = 94/174 (54%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
SD + ++L V + +T+ L FS G + S ++ RD+TT +SLGY VN+ + E
Sbjct: 4 SDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLE 63
Query: 80 DAERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYG 137
DAERA+ +N ++ K +++ +++ PS N++V L + + + L + F +G
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFG 123
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
I++ +++CD EN G SKG GFV F EAE A++++NG
Sbjct: 124 NILSCKVVCD----EN------G-------SKGYGFVHFETQEEAERAIEKMNG 160
Score = 196 (74.1 bits), Expect = 9.1e-22, Sum P(2) = 9.1e-22
Identities = 52/172 (30%), Positives = 92/172 (53%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E+AERAI +
Sbjct: 100 NIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEEAERAIEK 157
Query: 88 LNGLKLQNKSIKVS--------YARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V A + A + N+Y+ L + M E L++LF +G
Sbjct: 158 MNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDARKAVDEMNG 253
Score = 179 (68.1 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 62/192 (32%), Positives = 95/192 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + M E LQ LFS G S K++ D++ +S G+GFV++ R EDA +A+
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDES-GKSKGFGFVSFERHEDARKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEA---IK-RANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
E+NG L K I V A+ E +K + PK + Q + R G +
Sbjct: 250 EMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQMKQDKPK-IEQVPQDRSVRCQGVNLYV 308
Query: 143 RILCDKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIP 194
+ L D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I
Sbjct: 309 KNLDDGIDDERLRKEFSPFGTITSAKVTMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 368
Query: 195 EGASEPITVKFA 206
A++P+ V A
Sbjct: 369 --ATKPLYVALA 378
Score = 126 (49.4 bits), Expect = 9.7e-24, Sum P(2) = 9.7e-24
Identities = 32/107 (29%), Positives = 53/107 (49%)
Query: 246 RFKFAPLTADLLNNSMLPP-KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVV 304
+ KF + D +P +S+ G ++V NL +D L + F PFG + + KV
Sbjct: 277 KHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVT 336
Query: 305 RDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
+ + KGFGFVC ++ +EA A+ +NG + + L V+ K
Sbjct: 337 MEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 381
Score = 116 (45.9 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL + +D L LF FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKDLNGKQIYV 263
Score = 115 (45.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 34/88 (38%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IFV NL + L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
EA AI+ +NG L DR + V FK+ +
Sbjct: 150 EAERAIEKMNGMFLNDRKVFVGRFKSRR 177
Score = 65 (27.9 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 24/92 (26%), Positives = 39/92 (42%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS + A+LYV L +T+ L F P G I++ R+ D+ ++
Sbjct: 3 PSDPSYSLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSL---------- 52
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
G V F Q +AE A+ +N + +G
Sbjct: 53 -----GYASVNFQQLEDAERALDTMNFDVIKG 79
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 187 (70.9 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 58/185 (31%), Positives = 89/185 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ +F G++ +I+DK T G F+ Y E A + A+
Sbjct: 9 LFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKAQSAL 68
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S R L+V L K T ED+ +F +G I +L
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGEDR-KLFVGMLGKQQTDEDVRRMFETFGNIDECTVL 127
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
R GT SKG FV+F H EA+ A+ L+G T+P GAS + V
Sbjct: 128 ---------RG-PDGT------SKGCAFVKFQTHTEAQAAINALHGSRTLP-GASSSLVV 170
Query: 204 KFANS 208
KFA++
Sbjct: 171 KFADT 175
Score = 148 (57.2 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
Identities = 35/81 (43%), Positives = 47/81 (58%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A AI
Sbjct: 376 GCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAI 435
Query: 331 QSLNGYALGDRLLQVSFKTHK 351
QS+NG+ +G + L+V K K
Sbjct: 436 QSMNGFQIGMKRLKVQLKRPK 456
Score = 136 (52.9 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 11 TQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGY 70
TQ Q + N+ + ++PQ T E+ +F G V S K+ D+ T QS +
Sbjct: 361 TQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCF 420
Query: 71 GFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
GFV++ A+ AI +NG ++ K +KV RP
Sbjct: 421 GFVSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKRP 455
Score = 87 (35.7 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + N+++ LP+ T ++ +F P+G +I++++ D+ ++
Sbjct: 372 EGPEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQ--------------- 416
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 417 SKCFGFVSFDNPGSAQAAIQSMNG 440
Score = 85 (35.0 bits), Expect = 3.3e-12, Sum P(2) = 3.3e-12
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + T E+++ +F + G ++ C ++R S G FV +
Sbjct: 88 SESRGEDRKLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPD-GTSKGCAFVKFQTHT 146
Query: 80 DAERAIIELNGLKL---QNKSIKVSYARPSSE 108
+A+ AI L+G + + S+ V +A E
Sbjct: 147 EAQAAINALHGSRTLPGASSSLVVKFADTEKE 178
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 186 (70.5 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 59/185 (31%), Positives = 89/185 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ +F G + +I+DK T G F+ Y + A + A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S R L+V L K T ED+ +F P+GTI +L
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVL 127
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
R GT SKG FV+F H EA+ A+ L+ T+P GAS + V
Sbjct: 128 ---------RG-PDGT------SKGCAFVKFQTHAEAQAAINTLHSSRTLP-GASSSLVV 170
Query: 204 KFANS 208
KFA++
Sbjct: 171 KFADT 175
Score = 146 (56.5 bits), Expect = 2.3e-23, Sum P(2) = 2.3e-23
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 269 GSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
G C IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A
Sbjct: 326 GPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQ 385
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK 351
AIQ++NG+ +G + L+V K K
Sbjct: 386 AAIQAMNGFQIGMKRLKVQLKRPK 409
Score = 134 (52.2 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 12 QSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYG 71
Q + Q N+ + ++PQ T E+ +F G V S K+ D+ T QS +G
Sbjct: 315 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 374
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
FV++ A+ AI +NG ++ K +KV RP
Sbjct: 375 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 408
Score = 85 (35.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
N+++ LP+ T ++ +F P+G +I++++ D+ ++ SK GF
Sbjct: 331 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ---------------SKCFGF 375
Query: 174 VRFNQHIEAEHAMQELNG 191
V F+ A+ A+Q +NG
Sbjct: 376 VSFDNPASAQAAIQAMNG 393
Score = 75 (31.5 bits), Expect = 4.1e-11, Sum P(2) = 4.1e-11
Identities = 21/92 (22%), Positives = 42/92 (45%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + T E+++ +F G ++ C ++R S G FV +
Sbjct: 88 SESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHA 146
Query: 80 DAERAIIELNGLKL---QNKSIKVSYARPSSE 108
+A+ AI L+ + + S+ V +A E
Sbjct: 147 EAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 185 (70.2 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 50/172 (29%), Positives = 87/172 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T+ S Y +VN+ T+DAE A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N++V L K + + L + +G I++ +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+CD EN G SKG GFV F H AE A++++NG + G
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETHEAAERAIKKMNGMLLNG 165
Score = 180 (68.4 bits), Expect = 1.7e-12, P = 1.7e-12
Identities = 52/172 (30%), Positives = 90/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V + +++ + L S+ G + SC ++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 115 (45.5 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NG 335
NG
Sbjct: 252 NG 253
Score = 96 (38.9 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 31/88 (35%), Positives = 42/88 (47%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IFV NL + L+ FG + + VV D KG+GFV ++
Sbjct: 92 SLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L R + V FK+ K
Sbjct: 150 AAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Score = 74 (31.1 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 27/92 (29%), Positives = 41/92 (44%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ RI D + S G
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITS--------G---- 50
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
S +V F +AEHA+ +N + +G
Sbjct: 51 ---SSNYAYVNFQHTKDAEHALDTMNFDVIKG 79
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 186 (70.5 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 59/185 (31%), Positives = 89/185 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ +F G + +I+DK T G F+ Y + A + A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S R L+V L K T ED+ +F P+GTI +L
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVL 127
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
R GT SKG FV+F H EA+ A+ L+ T+P GAS + V
Sbjct: 128 ---------RG-PDGT------SKGCAFVKFQTHAEAQAAINTLHSSRTLP-GASSSLVV 170
Query: 204 KFANS 208
KFA++
Sbjct: 171 KFADT 175
Score = 146 (56.5 bits), Expect = 3.7e-23, Sum P(2) = 3.7e-23
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 269 GSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
G C IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A
Sbjct: 372 GPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQ 431
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK 351
AIQ++NG+ +G + L+V K K
Sbjct: 432 AAIQAMNGFQIGMKRLKVQLKRPK 455
Score = 134 (52.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 12 QSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYG 71
Q + Q N+ + ++PQ T E+ +F G V S K+ D+ T QS +G
Sbjct: 361 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 420
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
FV++ A+ AI +NG ++ K +KV RP
Sbjct: 421 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 454
Score = 85 (35.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
N+++ LP+ T ++ +F P+G +I++++ D+ ++ SK GF
Sbjct: 377 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ---------------SKCFGF 421
Query: 174 VRFNQHIEAEHAMQELNG 191
V F+ A+ A+Q +NG
Sbjct: 422 VSFDNPASAQAAIQAMNG 439
Score = 75 (31.5 bits), Expect = 6.0e-11, Sum P(2) = 6.0e-11
Identities = 21/92 (22%), Positives = 42/92 (45%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + T E+++ +F G ++ C ++R S G FV +
Sbjct: 88 SESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHA 146
Query: 80 DAERAIIELNGLKL---QNKSIKVSYARPSSE 108
+A+ AI L+ + + S+ V +A E
Sbjct: 147 EAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 186 (70.5 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 59/185 (31%), Positives = 89/185 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ +F G + +I+DK T G F+ Y + A + A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S R L+V L K T ED+ +F P+GTI +L
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVL 127
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
R GT SKG FV+F H EA+ A+ L+ T+P GAS + V
Sbjct: 128 ---------RG-PDGT------SKGCAFVKFQTHAEAQAAINTLHSSRTLP-GASSSLVV 170
Query: 204 KFANS 208
KFA++
Sbjct: 171 KFADT 175
Score = 146 (56.5 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 269 GSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
G C IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A
Sbjct: 376 GPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQ 435
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK 351
AIQ++NG+ +G + L+V K K
Sbjct: 436 AAIQAMNGFQIGMKRLKVQLKRPK 459
Score = 134 (52.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 12 QSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYG 71
Q + Q N+ + ++PQ T E+ +F G V S K+ D+ T QS +G
Sbjct: 365 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 424
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
FV++ A+ AI +NG ++ K +KV RP
Sbjct: 425 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 458
Score = 85 (35.0 bits), Expect = 0.00049, Sum P(2) = 0.00049
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
N+++ LP+ T ++ +F P+G +I++++ D+ ++ SK GF
Sbjct: 381 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ---------------SKCFGF 425
Query: 174 VRFNQHIEAEHAMQELNG 191
V F+ A+ A+Q +NG
Sbjct: 426 VSFDNPASAQAAIQAMNG 443
Score = 75 (31.5 bits), Expect = 6.2e-11, Sum P(2) = 6.2e-11
Identities = 21/92 (22%), Positives = 42/92 (45%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + T E+++ +F G ++ C ++R S G FV +
Sbjct: 88 SESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHA 146
Query: 80 DAERAIIELNGLKL---QNKSIKVSYARPSSE 108
+A+ AI L+ + + S+ V +A E
Sbjct: 147 EAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 216 (81.1 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 55/168 (32%), Positives = 89/168 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
+L V + +T +L F+ V +V S ++ RD T SLGYG+VNY T+DAE+A+ +
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 88 LNGLKLQNKSIKVSYARPSSEAIKRA--NLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
LN L K I+++Y+ S A + NL+V L K + + L F GTI++ ++
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVA 166
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
D M S+G GFV+F+ A++A+++LNG +
Sbjct: 167 TDHMGQ----------------SRGYGFVQFDTEDSAKNAIEKLNGKV 198
Score = 176 (67.0 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 61/201 (30%), Positives = 96/201 (47%)
Query: 1 MMKHEEMYNTTQSHRSTYQS-DVNEQNS---NLIVNYVPQTMTQEELQHLFSSVGEVESC 56
M K Y + R TY S D + + S NL V + +++ + L FS G + SC
Sbjct: 104 MQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 57 KLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVS-YARP-----SSEAI 110
K+ D QS GYGFV + + A+ AI +LNG L +K I V + R +++ +
Sbjct: 164 KVATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKM 222
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
K N+YV L + T ++L+ F YG+I ++ ++ D G + S+
Sbjct: 223 KFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD------------GDGK----SRC 266
Query: 171 IGFVRFNQHIEAEHAMQELNG 191
GFV F +A A++ LNG
Sbjct: 267 FGFVNFENPEDAARAVEALNG 287
Score = 169 (64.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 53/182 (29%), Positives = 84/182 (46%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + + T +EL+ F G + S ++RD +S +GFVN+ EDA RA+
Sbjct: 225 TNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGD-GKSRCFGFVNFENPEDAARAVE 283
Query: 87 ELNGLKLQNKSIKVSYARPSSEA-IKRANLYVSGLPKHMTQEDLENLF-RPYGTIITSRI 144
LNG K +K V A+ SE ++ + Y G + D NL+ + +T
Sbjct: 284 ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEK 343
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
L + A + + SKG GFV F+ EA + E+NG + G +P+ V
Sbjct: 344 LRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGG--KPLYVA 401
Query: 205 FA 206
A
Sbjct: 402 LA 403
Score = 136 (52.9 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
NL V + T+T E+L+ LF+ G + SCK++RD + S G GFV + +A R + E
Sbjct: 329 NLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNE 387
Query: 88 LNGLKLQNKSIKVSYARPSSEAIKRANL 115
+NG + K + V+ A+ E +RA L
Sbjct: 388 MNGKMVGGKPLYVALAQRKEE--RRAKL 413
Score = 113 (44.8 bits), Expect = 5.2e-23, Sum P(2) = 5.2e-23
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G ++V NL D L +LF FG + + KV+RDP KG GFV + EA +
Sbjct: 327 GLNLYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTS-KGSGFVAFSAASEASRVL 385
Query: 331 QSLNGYALGDRLLQVSFKTHK 351
+NG +G + L V+ K
Sbjct: 386 NEMNGKMVGGKPLYVALAQRK 406
Score = 110 (43.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL+ T D+ L FG +G++ + V+RD K + FGFV N ++A A+++L
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDG-KSRCFGFVNFENPEDAARAVEAL 285
Query: 334 NGYALGDR 341
NG D+
Sbjct: 286 NGKKFDDK 293
Score = 61 (26.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
+LYV L ++T L + F +++ R+ D A+ N S G G+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRD--AATNT-------------SLGYGY 91
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
V ++ +AE AMQ+LN + G IT +S
Sbjct: 92 VNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDS 126
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 184 (69.8 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 58/201 (28%), Positives = 97/201 (48%)
Query: 22 VNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ +Q++ L + +P+ + +++L+ LF G++ +++D+ T G F+ Y E
Sbjct: 130 MKDQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARES 189
Query: 81 A---ERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYG 137
A + A+ E L + I+V A S R L+V L K T+ED+ LF PYG
Sbjct: 190 AIKAQNALHEQKTLPGMTRPIQVKPADSESRGEDR-KLFVGMLNKQQTEEDVYRLFEPYG 248
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT----- 192
I +L G P+ SKG FV+F+ H EA+ A+ L+G+
Sbjct: 249 VIEECTVL-------------RG-PD--GNSKGCAFVKFSTHAEAQSAISALHGSQTMPT 292
Query: 193 -----IPEGASEPITVKFANS 208
+P+GAS + VKFA++
Sbjct: 293 GSDSLLPQGASSSLVVKFADT 313
Score = 151 (58.2 bits), Expect = 5.3e-23, Sum P(2) = 5.3e-23
Identities = 35/81 (43%), Positives = 47/81 (58%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G +F+Y+L E DN L Q+F PFG V + KV D T + K FGFV N A AI
Sbjct: 511 GCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAI 570
Query: 331 QSLNGYALGDRLLQVSFKTHK 351
Q++NG+ +G + L+V K K
Sbjct: 571 QAMNGFQIGMKRLKVQLKRPK 591
Score = 131 (51.2 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL +F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 510 EGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAA 569
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 570 IQAMNGFQIGMKRLKVQLKRP 590
Score = 95 (38.5 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L +F P+GT+I+S++ D+ ++
Sbjct: 507 EGPEGCNLFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQ--------------- 551
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 552 SKCFGFVSFDNPASAQAAIQAMNG 575
Score = 84 (34.6 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 20/71 (28%), Positives = 35/71 (49%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + T+E++ LF G +E C ++R S G FV +
Sbjct: 217 SESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPD-GNSKGCAFVKFSTHA 275
Query: 80 DAERAIIELNG 90
+A+ AI L+G
Sbjct: 276 EAQSAISALHG 286
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 186 (70.5 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 59/185 (31%), Positives = 89/185 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ +F G + +I+DK T G F+ Y + A + A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S R L+V L K T ED+ +F P+GTI +L
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGEDR-KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVL 127
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
R GT SKG FV+F H EA+ A+ L+ T+P GAS + V
Sbjct: 128 ---------RG-PDGT------SKGCAFVKFQTHAEAQAAINTLHSSRTLP-GASSSLVV 170
Query: 204 KFANS 208
KFA++
Sbjct: 171 KFADT 175
Score = 145 (56.1 bits), Expect = 6.3e-23, Sum P(2) = 6.3e-23
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A AI
Sbjct: 408 GCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAI 467
Query: 331 QSLNGYALGDRLLQVSFKTHK 351
Q++NG+ +G + L+V K K
Sbjct: 468 QAMNGFQIGMKRLKVQLKRPK 488
Score = 137 (53.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 29/101 (28%), Positives = 48/101 (47%)
Query: 5 EEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT 64
++ Q + Q N+ + ++PQ T E+ +F G V S K+ D+ T
Sbjct: 387 QQQQQQQQQQQQQQQQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRAT 446
Query: 65 AQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
QS +GFV++ A+ AI +NG ++ K +KV RP
Sbjct: 447 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 487
Score = 85 (35.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
N+++ LP+ T ++ +F P+G +I++++ D+ ++ SK GF
Sbjct: 410 NIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQ---------------SKCFGF 454
Query: 174 VRFNQHIEAEHAMQELNG 191
V F+ A+ A+Q +NG
Sbjct: 455 VSFDNPASAQAAIQAMNG 472
Score = 75 (31.5 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 21/92 (22%), Positives = 42/92 (45%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + T E+++ +F G ++ C ++R S G FV +
Sbjct: 88 SESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHA 146
Query: 80 DAERAIIELNGLKL---QNKSIKVSYARPSSE 108
+A+ AI L+ + + S+ V +A E
Sbjct: 147 EAQAAINTLHSSRTLPGASSSLVVKFADTEKE 178
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 184 (69.8 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 58/185 (31%), Positives = 90/185 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ +F G + +I+DK T G F+ Y + A + A+
Sbjct: 9 LFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S ++ L+V L K T ED+ +F P+GTI +L
Sbjct: 69 HEQKTLPGMNRPIQVKPADSESRGDRK--LFVGMLGKQQTDEDVRKMFEPFGTIDECTVL 126
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
R GT SKG FV+F H EA+ A+ L+ T+P GAS + V
Sbjct: 127 ---------RG-PDGT------SKGCAFVKFQTHAEAQAAINTLHSSRTLP-GASSSLVV 169
Query: 204 KFANS 208
KFA++
Sbjct: 170 KFADT 174
Score = 146 (56.5 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 269 GSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
G C IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A
Sbjct: 376 GPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQ 435
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK 351
AIQ++NG+ +G + L+V K K
Sbjct: 436 AAIQAMNGFQIGMKRLKVQLKRPK 459
Score = 135 (52.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 29/101 (28%), Positives = 48/101 (47%)
Query: 5 EEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT 64
++ Q + Q N+ + ++PQ T E+ +F G V S K+ D+ T
Sbjct: 358 QQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRAT 417
Query: 65 AQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
QS +GFV++ A+ AI +NG ++ K +KV RP
Sbjct: 418 NQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 458
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 184 (69.8 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 61/195 (31%), Positives = 93/195 (47%)
Query: 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT 78
+S EQ+S +P+ + +++L+ +F G + +I+DK T G F+ Y
Sbjct: 3 ESAAGEQSSG---TQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCAR 59
Query: 79 EDA---ERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+ A + A+ E L N+ I+V A S R L+V L K T ED+ +F P
Sbjct: 60 DSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDR-KLFVGMLGKQQTDEDVRKMFEP 118
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TI 193
+GTI +L R GT SKG FV+F H EA+ A+ L+ T+
Sbjct: 119 FGTIDECTVL---------RG-PDGT------SKGCAFVKFQTHAEAQAAINTLHSSRTL 162
Query: 194 PEGASEPITVKFANS 208
P GAS + VKFA++
Sbjct: 163 P-GASSSLVVKFADT 176
Score = 146 (56.5 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 269 GSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
G C IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A
Sbjct: 376 GPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQ 435
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK 351
AIQ++NG+ +G + L+V K K
Sbjct: 436 AAIQAMNGFQIGMKRLKVQLKRPK 459
Score = 134 (52.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 12 QSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYG 71
Q + Q N+ + ++PQ T E+ +F G V S K+ D+ T QS +G
Sbjct: 365 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 424
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
FV++ A+ AI +NG ++ K +KV RP
Sbjct: 425 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 458
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 168 (64.2 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 55/184 (29%), Positives = 87/184 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ LF G + +++D+ T G F+ Y + A + A+
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A R L+V L K +ED+ LF+P+G I +L
Sbjct: 108 HEQKTLPGMNRPIQVKPAASEGRGEDR-KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVL 166
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVK 204
RS GT SKG FV+F EA+ A+Q L+G+ GAS + VK
Sbjct: 167 ---------RS-PDGT------SKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 210
Query: 205 FANS 208
A++
Sbjct: 211 LADT 214
Score = 165 (63.1 bits), Expect = 7.6e-23, Sum P(2) = 7.6e-23
Identities = 43/114 (37%), Positives = 61/114 (53%)
Query: 242 HHSARFK--FAPLTADLLNN-SMLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGA 297
H++A + +AP++ S LP + G C +F+Y+L E D L Q F PFGA
Sbjct: 363 HYAAAYPSAYAPVSTTFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGA 422
Query: 298 VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
V + KV D T + K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 423 VVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 476
Score = 124 (48.7 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 395 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 454
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 455 IQAMNGFQIGMKRLKVQLKRP 475
Score = 82 (33.9 bits), Expect = 7.6e-14, Sum P(2) = 7.6e-14
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + +E+++ LF G +E C ++R S G FV +
Sbjct: 127 SEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQG 185
Query: 80 DAERAIIELNGLKLQ---NKSIKVSYARPSSE-AIKR 112
+A+ AI L+G + + S+ V A E A++R
Sbjct: 186 EAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRR 222
Score = 81 (33.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L F P+G ++++++ D+ ++
Sbjct: 392 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--------------- 436
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 437 SKCFGFVSFDNPTSAQTAIQAMNG 460
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 168 (64.2 bits), Expect = 9.7e-23, Sum P(2) = 9.7e-23
Identities = 55/184 (29%), Positives = 87/184 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ LF G + +++D+ T G F+ Y + A + A+
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A R L+V L K +ED+ LF+P+G I +L
Sbjct: 108 HEQKTLPGMNRPIQVKPAASEGRGEDR-KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVL 166
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVK 204
RS GT SKG FV+F EA+ A+Q L+G+ GAS + VK
Sbjct: 167 ---------RS-PDGT------SKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSSLVVK 210
Query: 205 FANS 208
A++
Sbjct: 211 LADT 214
Score = 164 (62.8 bits), Expect = 9.7e-23, Sum P(2) = 9.7e-23
Identities = 43/114 (37%), Positives = 61/114 (53%)
Query: 242 HHSARFK--FAPLTADLLNN-SMLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGA 297
H++A + +AP++ S LP + G C +F+Y+L E D L Q F PFGA
Sbjct: 363 HYAAAYPSAYAPVSTTFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGA 422
Query: 298 VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
V + KV D T + K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 423 VVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 476
Score = 124 (48.7 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 395 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 454
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 455 IQAMNGFQIGMKRLKVQLKRP 475
Score = 82 (33.9 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + +E+++ LF G +E C ++R S G FV +
Sbjct: 127 SEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQG 185
Query: 80 DAERAIIELNGLKLQ---NKSIKVSYARPSSE-AIKR 112
+A+ AI L+G + + S+ V A E A++R
Sbjct: 186 EAQAAIQSLHGSRTMAGASSSLVVKLADTDRERALRR 222
Score = 81 (33.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L F P+G ++++++ D+ ++
Sbjct: 392 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--------------- 436
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 437 SKCFGFVSFDNPTSAQTAIQAMNG 460
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 184 (69.8 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 61/195 (31%), Positives = 93/195 (47%)
Query: 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT 78
+S EQ+S +P+ + +++L+ +F G + +I+DK T G F+ Y
Sbjct: 79 ESAAGEQSSG---TQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCAR 135
Query: 79 EDA---ERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+ A + A+ E L N+ I+V A S R L+V L K T ED+ +F P
Sbjct: 136 DSALKAQSALHEQKTLPGMNRPIQVKPADSESRGEDR-KLFVGMLGKQQTDEDVRKMFEP 194
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TI 193
+GTI +L R GT SKG FV+F H EA+ A+ L+ T+
Sbjct: 195 FGTIDECTVL---------RG-PDGT------SKGCAFVKFQTHAEAQAAINTLHSSRTL 238
Query: 194 PEGASEPITVKFANS 208
P GAS + VKFA++
Sbjct: 239 P-GASSSLVVKFADT 252
Score = 146 (56.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 269 GSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
G C IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A
Sbjct: 450 GPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQ 509
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK 351
AIQ++NG+ +G + L+V K K
Sbjct: 510 AAIQAMNGFQIGMKRLKVQLKRPK 533
Score = 134 (52.2 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 12 QSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYG 71
Q + Q N+ + ++PQ T E+ +F G V S K+ D+ T QS +G
Sbjct: 439 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 498
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
FV++ A+ AI +NG ++ K +KV RP
Sbjct: 499 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 532
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 182 (69.1 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 60/195 (30%), Positives = 94/195 (48%)
Query: 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT 78
+S EQ+S +P+ + +++L+ +F G + +I+DK T G F+ Y
Sbjct: 4 ESAAGEQSSG---TQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCAR 60
Query: 79 EDA---ERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+ A + A+ E L N+ I+V A S ++ L+V L K T ED+ +F P
Sbjct: 61 DSALKAQSALHEQKTLPGMNRPIQVKPADSESRGDRK--LFVGMLGKQQTDEDVRKMFEP 118
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TI 193
+GTI +L R GT SKG FV+F H EA+ A+ L+ T+
Sbjct: 119 FGTIDECTVL---------RG-PDGT------SKGCAFVKFQTHAEAQAAINTLHSSRTL 162
Query: 194 PEGASEPITVKFANS 208
P GAS + VKFA++
Sbjct: 163 P-GASSSLVVKFADT 176
Score = 146 (56.5 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 35/84 (41%), Positives = 48/84 (57%)
Query: 269 GSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
G C IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A
Sbjct: 377 GPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQ 436
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK 351
AIQ++NG+ +G + L+V K K
Sbjct: 437 AAIQAMNGFQIGMKRLKVQLKRPK 460
Score = 134 (52.2 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 12 QSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYG 71
Q + Q N+ + ++PQ T E+ +F G V S K+ D+ T QS +G
Sbjct: 366 QQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFG 425
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
FV++ A+ AI +NG ++ K +KV RP
Sbjct: 426 FVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 459
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 174 (66.3 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 46/115 (40%), Positives = 63/115 (54%)
Query: 241 LHHSARFK--FAPL-TADLLNNSMLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFG 296
+HH A + +AP+ TA +S LP + G C +F+Y+L E D L Q F PFG
Sbjct: 307 MHHYAAYPSAYAPVSTAFPQQSSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFG 366
Query: 297 AVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
AV + KV D T + K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 367 AVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 421
Score = 151 (58.2 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
Identities = 49/167 (29%), Positives = 78/167 (46%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ LF G + +++D+ T G F+ Y + A + A+
Sbjct: 9 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 68
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A R L+V L K +ED+ LF+P+G I +L
Sbjct: 69 HEQKTLPGMNRPIQVKPAASEGRGEDR-KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVL 127
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192
RS GT SKG FV+F EA+ A+Q L+G+
Sbjct: 128 ---------RS-PDGT------SKGCAFVKFGSQGEAQAAIQSLHGS 158
Score = 127 (49.8 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 31/94 (32%), Positives = 45/94 (47%)
Query: 12 QSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYG 71
QS Q + NL + ++PQ EL F G V S K+ D+ T QS +G
Sbjct: 327 QSSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFG 386
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
FV++ A+ AI +NG ++ K +KV RP
Sbjct: 387 FVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRP 420
Score = 81 (33.6 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L F P+G ++++++ D+ ++
Sbjct: 337 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--------------- 381
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 382 SKCFGFVSFDNPTSAQTAIQAMNG 405
Score = 80 (33.2 bits), Expect = 6.2e-15, Sum P(2) = 6.2e-15
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + +E+++ LF G +E C ++R S G FV +
Sbjct: 88 SEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQG 146
Query: 80 DAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+A+ AI L+G + +++ AR EA
Sbjct: 147 EAQAAIQSLHGSRTM--AVRAG-ARGQGEA 173
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 166 (63.5 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 45/114 (39%), Positives = 62/114 (54%)
Query: 242 HHSARFK--FAPL-TADLLNNSMLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGA 297
H++A + +AP+ TA S LP + G C +F+Y+L E D L Q F PFGA
Sbjct: 362 HYAAAYPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGA 421
Query: 298 VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
V + KV D T + K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 422 VVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 475
Score = 162 (62.1 bits), Expect = 2.6e-22, Sum P(2) = 2.6e-22
Identities = 54/184 (29%), Positives = 87/184 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ LF G + +++D+ T G F+ Y + A + A+
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A R L+V L K +ED+ LF+P+G I +L
Sbjct: 108 HEQKTLPGMNRPIQVKPAASEGRGEDR-KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVL 166
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVK 204
RS GT SKG FV+F EA+ A++ L+G+ GAS + VK
Sbjct: 167 ---------RS-PDGT------SKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSSLVVK 210
Query: 205 FANS 208
A++
Sbjct: 211 LADT 214
Score = 124 (48.7 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 394 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 453
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 454 IQAMNGFQIGMKRLKVQLKRP 474
Score = 81 (33.6 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L F P+G ++++++ D+ ++
Sbjct: 391 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--------------- 435
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 436 SKCFGFVSFDNPTSAQTAIQAMNG 459
Score = 80 (33.2 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + +E+++ LF G +E C ++R S G FV +
Sbjct: 127 SEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQG 185
Query: 80 DAERAIIELNGLKLQ---NKSIKVSYARPSSE-AIKR 112
+A+ AI L+G + + S+ V A E A++R
Sbjct: 186 EAQAAIRGLHGSRTMAGASSSLVVKLADTDRERALRR 222
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 166 (63.5 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 55/184 (29%), Positives = 87/184 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ LF G + +++D+ T G F+ Y + A + A+
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A R L+V L K +ED+ LF+P+G I +L
Sbjct: 108 HEQKTLPGMNRPIQVKPAASEGRGEDR-KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVL 166
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVK 204
RS GT SKG FV+F EA+ A+Q L+G+ GAS + VK
Sbjct: 167 ---------RS-PDGT------SKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVK 210
Query: 205 FANS 208
A++
Sbjct: 211 LADT 214
Score = 161 (61.7 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 43/105 (40%), Positives = 57/105 (54%)
Query: 249 FAPL-TADLLNNSMLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+AP+ TA S LP + G C +F+Y+L E D L Q F PFGAV + KV D
Sbjct: 350 YAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVD 409
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T + K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 410 RATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 454
Score = 124 (48.7 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 373 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 432
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 433 IQAMNGFQIGMKRLKVQLKRP 453
Score = 81 (33.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L F P+G ++++++ D+ ++
Sbjct: 370 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--------------- 414
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 415 SKCFGFVSFDNPTSAQTAIQAMNG 438
Score = 80 (33.2 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + +E+++ LF G +E C ++R S G FV +
Sbjct: 127 SEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQG 185
Query: 80 DAERAIIELNGLKLQ---NKSIKVSYARPSSE-AIKR 112
+A+ AI L+G + + S+ V A E A++R
Sbjct: 186 EAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRR 222
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 166 (63.5 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 55/184 (29%), Positives = 87/184 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ LF G + +++D+ T G F+ Y + A + A+
Sbjct: 48 LFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSAL 107
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A R L+V L K +ED+ LF+P+G I +L
Sbjct: 108 HEQKTLPGMNRPIQVKPAASEGRGEDR-KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVL 166
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVK 204
RS GT SKG FV+F EA+ A+Q L+G+ GAS + VK
Sbjct: 167 ---------RS-PDGT------SKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSSLVVK 210
Query: 205 FANS 208
A++
Sbjct: 211 LADT 214
Score = 160 (61.4 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
Identities = 43/105 (40%), Positives = 56/105 (53%)
Query: 249 FAPL-TADLLNNSMLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
+AP TA S LP + G C +F+Y+L E D L Q F PFGAV + KV D
Sbjct: 350 YAPASTAFSQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVD 409
Query: 307 PQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
T + K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 410 RATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 454
Score = 124 (48.7 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 373 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 432
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 433 IQAMNGFQIGMKRLKVQLKRP 453
Score = 81 (33.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L F P+G ++++++ D+ ++
Sbjct: 370 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--------------- 414
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 415 SKCFGFVSFDNPTSAQTAIQAMNG 438
Score = 80 (33.2 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 25/97 (25%), Positives = 46/97 (47%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + +E+++ LF G +E C ++R S G FV +
Sbjct: 127 SEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQG 185
Query: 80 DAERAIIELNGLKLQ---NKSIKVSYARPSSE-AIKR 112
+A+ AI L+G + + S+ V A E A++R
Sbjct: 186 EAQAAIQGLHGSRTMTGASSSLVVKLADTDRERALRR 222
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 173 (66.0 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 55/185 (29%), Positives = 91/185 (49%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ LF G++ +++D+ T G F+ Y E A + A+
Sbjct: 49 LFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTAL 108
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S R L+V L K ++D+ LF +G+I IL
Sbjct: 109 HEQKTLPGMNRPIQVKPADSESRGEDR-KLFVGMLNKQQCEDDVRRLFESFGSIEECTIL 167
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
G P+ SKG FV+++ H EA+ A+ L+G T+P GAS + V
Sbjct: 168 -------------RG-PD--GNSKGCAFVKYSTHAEAQAAISALHGSQTMP-GASSSLVV 210
Query: 204 KFANS 208
KFA++
Sbjct: 211 KFADT 215
Score = 153 (58.9 bits), Expect = 4.4e-22, Sum P(2) = 4.4e-22
Identities = 37/92 (40%), Positives = 51/92 (55%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
++P + G C +F+Y+L E D L Q+F PFG V + KV D T + K FGFV
Sbjct: 423 IIPQQQREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVS 482
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
N A AIQS+NG+ +G + L+V K K
Sbjct: 483 FDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPK 514
Score = 128 (50.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL +F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 433 EGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPGSAQAA 492
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 493 IQSMNGFQIGMKRLKVQLKRP 513
Score = 94 (38.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + +++++ LF S G +E C ++R S G FV Y
Sbjct: 128 SESRGEDRKLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSTHA 186
Query: 80 DAERAIIELNGLKLQ---NKSIKVSYARPSSE-AIKR 112
+A+ AI L+G + + S+ V +A E I+R
Sbjct: 187 EAQAAISALHGSQTMPGASSSLVVKFADTDKERTIRR 223
Score = 86 (35.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L +F P+G +I+S++ D+ ++
Sbjct: 430 EGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQ--------------- 474
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 475 SKCFGFVSFDNPGSAQAAIQSMNG 498
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 178 (67.7 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 55/185 (29%), Positives = 88/185 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L + +P+ + +++L+ +F G++ +I+DK T G F+ Y E A +A L
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKAQSAL 68
Query: 89 N---GLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
+ G N+ I+V A R L+V L K + ED+ +F P+G I +L
Sbjct: 69 HYSSGYSGMNRPIQVKPADSEGRGEDR-KLFVGMLGKQQSDEDVRKIFEPFGGIDECTVL 127
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
R GT + G FV+F H EA+ A+ L+G T+P GAS + V
Sbjct: 128 ---------RG-PDGTSKA-----GCAFVKFQSHSEAQSAINSLHGSRTLP-GASSSLVV 171
Query: 204 KFANS 208
KFA++
Sbjct: 172 KFADT 176
Score = 143 (55.4 bits), Expect = 6.3e-22, Sum P(2) = 6.3e-22
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G +F+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A AI
Sbjct: 356 GCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAI 415
Query: 331 QSLNGYALGDRLLQVSFKTHK 351
Q++NG+ +G + L+V K K
Sbjct: 416 QAMNGFQIGMKRLKVQLKRPK 436
Score = 135 (52.6 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 29/105 (27%), Positives = 56/105 (53%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIR 60
++ +++ + +Q R +++ + N+ + ++PQ T E+ +F G V S K+
Sbjct: 334 LISQQQLQSFSQCVR---EANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFV 390
Query: 61 DKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
D+ T QS +GFV++ A+ AI +NG ++ K +KV RP
Sbjct: 391 DRATNQSKCFGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRP 435
Score = 88 (36.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/88 (23%), Positives = 44/88 (50%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
R ++ + N+++ LP+ T ++ +F P+G +I++++ D+ ++
Sbjct: 348 REANTGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQ----------- 396
Query: 164 IPQISKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 397 ----SKCFGFVSFDNPASAQTAIQAMNG 420
Score = 85 (35.0 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 23/105 (21%), Positives = 47/105 (44%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S+ ++ L V + + + E+++ +F G ++ C ++R G FV +
Sbjct: 88 SEGRGEDRKLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHS 147
Query: 80 DAERAIIELNGLKL---QNKSIKVSYARPSSE-AIKRANLYVSGL 120
+A+ AI L+G + + S+ V +A E ++R S L
Sbjct: 148 EAQSAINSLHGSRTLPGASSSLVVKFADTEKERGVRRMQQVTSQL 192
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 190 (71.9 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 48/173 (27%), Positives = 89/173 (51%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+S+L V + ++++ L +F+ VG V + ++ RD T +SL Y +VNYY DAERA+
Sbjct: 9 SSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERAL 68
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
LN ++ K+ ++ +++ PS N+++ L K + + L + F +G I++ +
Sbjct: 69 DTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCK 128
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
++ D S SKG GFV + A+ A+ ++NG + G
Sbjct: 129 VVTDDGNS----------------SKGFGFVHYETQESADKAIAKVNGMMING 165
Score = 160 (61.4 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 47/179 (26%), Positives = 83/179 (46%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + + + + L FS+ G + SCK++ D + S G+GFV+Y E A++AI +
Sbjct: 99 NVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAK 157
Query: 88 LNGLKLQNKSIKVSYARPSSEA-----IKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
+NG+ + + + V + S E +K N++ L + + + L+ L + YG I
Sbjct: 158 VNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNI 217
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPI 201
I+ D SKG GF F A++ ++ NG I G +PI
Sbjct: 218 TIMADDKGK----------------SKGFGFANFESAEAAKNVVENENGKIFHG--KPI 258
Score = 131 (51.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 30/101 (29%), Positives = 53/101 (52%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q NL + + ++ ++L+ +FS G + S +++D S G+GFV Y ++A RA
Sbjct: 282 QGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRA 341
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
+ E+NG + K + V+ A+ I+RA L + K T
Sbjct: 342 VTEMNGRMIGTKPLYVALAQRKD--IRRAQLEMQHQQKFKT 380
Score = 130 (50.8 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N+ +++ L ++F FG + + V++D + KGFGFVC T DEA A+ +
Sbjct: 286 LYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEM 345
Query: 334 NGYALGDRLLQVSFKTHKPL 353
NG +G + L V+ K +
Sbjct: 346 NGRMIGTKPLYVALAQRKDI 365
Score = 124 (48.7 bits), Expect = 0.00010, P = 0.00010
Identities = 45/191 (23%), Positives = 82/191 (42%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + ++L+ L GE+ + ++ D +S G+GF N+ E A+ +
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVE 246
Query: 87 ELNGLKLQNKSIKVSYARPSSEA---IKRA--------NLYVSGLPKHMTQEDLENLFRP 135
NG K I A+ E +K NLY+ + + + L +F
Sbjct: 247 NENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQ 306
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPE 195
+GTI ++ ++ D A+ SKG GFV + EA A+ E+NG +
Sbjct: 307 FGTITSAIVMKDDKATT---------------SKGFGFVCYTAPDEATRAVTEMNGRMI- 350
Query: 196 GASEPITVKFA 206
++P+ V A
Sbjct: 351 -GTKPLYVALA 360
Score = 77 (32.2 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F NL+ + + L +L +G + N+ ++ D + K KGFGF + + A +++
Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKG-KSKGFGFANFESAEAAKNVVENE 248
Query: 334 NG 335
NG
Sbjct: 249 NG 250
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 176 (67.0 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 54/185 (29%), Positives = 88/185 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ LF G + +++D T G F+ Y + A + A+
Sbjct: 47 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L + I+V A S + L+V L K ++ED+ LF+P+G I +L
Sbjct: 107 HEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVL 166
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
S SKG FV+F+ H EA+ A+ L+G T+P GAS + V
Sbjct: 167 RGPDGS----------------SKGCAFVKFSSHTEAQAAIHALHGSQTMP-GASSSLVV 209
Query: 204 KFANS 208
KFA++
Sbjct: 210 KFADT 214
Score = 144 (55.7 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 35/92 (38%), Positives = 50/92 (54%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
+L + G C +F+Y+L E D L Q+F PFG + + KV D T + K FGFV
Sbjct: 388 LLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVS 447
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
N A AIQ++NG+ +G + L+V K K
Sbjct: 448 FDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 479
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL +F G + S K+ D+ T QS +GFV++ A+ A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTA 457
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRP 478
Score = 81 (33.6 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 45/193 (23%), Positives = 73/193 (37%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L V + + ++E++ LF G ++ C ++R S G FV + +A+ A
Sbjct: 132 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAA 190
Query: 85 IIELNGLKLQ---NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
I L+G + + S+ V +A E R + G +T L F PY
Sbjct: 191 IHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPS-LTLPFSPYSAYAQ 249
Query: 142 SRILCDKMASENVRSFVS-GTPEIPQISKGIGFVRFN-------QHIEAEHAMQELNGTI 193
+ + S++S G P + IG V N H+ L T
Sbjct: 250 ALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTA 309
Query: 194 PEGASEPITVKFA 206
G PIT FA
Sbjct: 310 VPGLVAPITNGFA 322
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 174 (66.3 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 57/196 (29%), Positives = 89/196 (45%)
Query: 17 TY-QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
TY + + + N + V VP++M + +L+ +F G V S ++RDK T S G FV +
Sbjct: 346 TYGEKEPDPDNIKMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTF 405
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPS-SEAIKRANLYVSGLPKHMTQEDLENLFR 134
Y A +A L+ +K N +P+ SE L+V L K + + D+ LF
Sbjct: 406 YTRHAALKAQDALHNVKTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFE 465
Query: 135 PYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRF-NQHIEAEHAMQELN-GT 192
+G I +L D+ +G SKG FV F +H L+
Sbjct: 466 VHGAIEECTVLRDQ----------NGQ------SKGCAFVTFATKHAAISAIKVTLSQNK 509
Query: 193 IPEGASEPITVKFANS 208
I EG + P+ VKFA++
Sbjct: 510 IMEGCTSPLVVKFADT 525
Score = 153 (58.9 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 37/92 (40%), Positives = 49/92 (53%)
Query: 265 KSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY 323
K + G C +F+Y+L E D L F PFG V + KV D QT K FGFV N
Sbjct: 718 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNP 777
Query: 324 DEAVFAIQSLNGYALGDRLLQVSFKTHKPLPP 355
D A AI+++NG+ +G + L+V K K P
Sbjct: 778 DSAQVAIKAMNGFQVGTKRLKVQLKKPKDSKP 809
Score = 126 (49.4 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ T +L F G V S K+ DK T+ S +GFV++ + A+ A
Sbjct: 724 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVA 783
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV +P
Sbjct: 784 IKAMNGFQVGTKRLKVQLKKP 804
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 174 (66.3 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 54/185 (29%), Positives = 91/185 (49%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ +F G++ +I+DK T G F+ Y E A + A+
Sbjct: 9 LFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNAL 68
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A SE L+V L K ++ D+ +F P+G+I +L
Sbjct: 69 HEQKTLPGMNRPIQVKPA--DSEGRGDRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVL 126
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
G P+ SKG FV++ + EA+ A+ L+G T+P GAS + V
Sbjct: 127 -------------RG-PD--GASKGCAFVKYQSNAEAQAAISALHGSRTLP-GASSSLVV 169
Query: 204 KFANS 208
KFA++
Sbjct: 170 KFADT 174
Score = 144 (55.7 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 34/81 (41%), Positives = 47/81 (58%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G IF+Y+L E D+ + Q+F PFG V + KV D T + K FGFV N A AI
Sbjct: 366 GCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAI 425
Query: 331 QSLNGYALGDRLLQVSFKTHK 351
Q++NG+ +G + L+V K K
Sbjct: 426 QAMNGFQIGMKRLKVQLKRPK 446
Score = 132 (51.5 bits), Expect = 9.3e-06, P = 9.3e-06
Identities = 27/81 (33%), Positives = 44/81 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ N+ + ++PQ T E+ +F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 365 EGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAA 424
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 425 IQAMNGFQIGMKRLKVQLKRP 445
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 174 (66.3 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 54/185 (29%), Positives = 88/185 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L V +P+ + +++L+ LF G + +++D T G F+ Y + A + A+
Sbjct: 47 LFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKAQTAL 106
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L + I+V A S + L+V L K ++ED+ LF+P+G I +L
Sbjct: 107 HEQKTLPGMARPIQVKPADSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVL 166
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
S SKG FV+F+ H EA+ A+ L+G T+P GAS + V
Sbjct: 167 RGPDGS----------------SKGCAFVKFSSHTEAQAAIHALHGSQTMP-GASSSLVV 209
Query: 204 KFANS 208
KFA++
Sbjct: 210 KFADT 214
Score = 144 (55.7 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 35/92 (38%), Positives = 50/92 (54%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
+L + G C +F+Y+L E D L Q+F PFG + + KV D T + K FGFV
Sbjct: 388 LLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVS 447
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
N A AIQ++NG+ +G + L+V K K
Sbjct: 448 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 479
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL +F G + S K+ D+ T QS +GFV++ A+ A
Sbjct: 398 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQAA 457
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 458 IQAMNGFQIGMKRLKVQLKRP 478
Score = 81 (33.6 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 45/193 (23%), Positives = 73/193 (37%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L V + + ++E++ LF G ++ C ++R S G FV + +A+ A
Sbjct: 132 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPD-GSSKGCAFVKFSSHTEAQAA 190
Query: 85 IIELNGLKLQ---NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
I L+G + + S+ V +A E R + G +T L F PY
Sbjct: 191 IHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPS-LTLPFSPYSAYAQ 249
Query: 142 SRILCDKMASENVRSFVS-GTPEIPQISKGIGFVRFN-------QHIEAEHAMQELNGTI 193
+ + S++S G P + IG V N H+ L T
Sbjct: 250 ALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLNGLPATPIAPASGLHSPPLLGTTA 309
Query: 194 PEGASEPITVKFA 206
G PIT FA
Sbjct: 310 VPGLVAPITNGFA 322
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 193 (73.0 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 45/170 (26%), Positives = 91/170 (53%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+++L V + ++T+ L LF+S+G V S ++ RD T +SLGY +VN++ ED E+A+
Sbjct: 79 SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
ELN ++ + ++ +++ PS + N+++ L + + L + F +G I++ +
Sbjct: 139 DELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCK 198
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+ D++ + +KG GFV F+ A A++ +NG +
Sbjct: 199 VAVDELGN----------------AKGYGFVHFDSVESANAAIEHVNGML 232
Score = 163 (62.4 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 60/218 (27%), Positives = 100/218 (45%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQT---MTQEELQHLFSSVGEVESCK 57
++ +++Y R QS V +N Y+ +T++E LF GE+ S
Sbjct: 232 LLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLS 291
Query: 58 LIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYV 117
L++D+ + G+GFVNY E A++A+ ELN + + K + V A+ E +
Sbjct: 292 LVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE----- 345
Query: 118 SGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS--GTPEIPQI-------S 168
L K Q LE + + G + + L D++ E +++ S GT +I S
Sbjct: 346 --LRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS 403
Query: 169 KGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
KG GFV + EA A+ E+N + G +P+ V A
Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAG--KPLYVALA 439
Score = 160 (61.4 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 48/171 (28%), Positives = 84/171 (49%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + + + L FS+ G++ SCK+ D+ + GYGFV++ E A AI
Sbjct: 169 NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEH 227
Query: 88 LNGLKLQNKSIKVSY-----ARPSS-EAIKR--ANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L +K + V + R S EA+K N+Y+ L +T+++ +LF +G I
Sbjct: 228 VNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEI 287
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190
+ ++ D+ + P +G GFV + H A+ A+ ELN
Sbjct: 288 TSLSLVKDQ----------NDKP------RGFGFVNYANHECAQKAVDELN 322
Score = 125 (49.1 bits), Expect = 2.9e-21, Sum P(2) = 2.9e-21
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL E +D L F FG + + K++ D Q K KGFGFVC T +EA A+ +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQG-KSKGFGFVCYTTPEEANKAVTEM 424
Query: 334 NGYALGDRLLQVSFKTHK 351
N L + L V+ K
Sbjct: 425 NQRMLAGKPLYVALAQRK 442
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 32/114 (28%), Positives = 58/114 (50%)
Query: 3 KHEEMYNTTQSHRSTYQSDVNE-QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRD 61
KHE + + +N+ Q NL + + + E L+ FS+ G + S K++ D
Sbjct: 339 KHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD 398
Query: 62 KTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANL 115
+ +S G+GFV Y E+A +A+ E+N L K + V+ A+ + ++R+ L
Sbjct: 399 EQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ--RKEVRRSQL 449
Score = 107 (42.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVF 328
G+G +F+ NL P ++ L F FG + + KV D + KG+GFV + + A
Sbjct: 166 GTG-NVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANA 223
Query: 329 AIQSLNGYALGDRLLQV 345
AI+ +NG L D+ + V
Sbjct: 224 AIEHVNGMLLNDKKVYV 240
Score = 100 (40.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL E + LFG FG + ++ +V+D Q K +GFGFV N++ A A+ L
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDEL 321
Query: 334 N 334
N
Sbjct: 322 N 322
Score = 76 (31.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 27/96 (28%), Positives = 42/96 (43%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A PS A A+LYV L +T+ L LF G + + R+ D + ++
Sbjct: 68 SVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSL------ 121
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
G +V F+ + E A+ ELN T+ +G
Sbjct: 122 ---------GYAYVNFHNMEDGEKALDELNYTLIKG 148
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 196 (74.1 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 50/169 (29%), Positives = 90/169 (53%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + Q +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 193 (73.0 bits), Expect = 8.7e-21, Sum P(2) = 8.7e-21
Identities = 52/172 (30%), Positives = 93/172 (54%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M + L+++F YG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ R++ D EN +S +G GFV F +H +A+ A+ E+NG
Sbjct: 218 MSIRVMTD----ENGKS------------RGFGFVSFERHEDAQRAVDEMNG 253
Score = 175 (66.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 56/188 (29%), Positives = 97/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M ++L+ +FS G S +++ D+ +S G+GFV++ R EDA+RA+
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDEN-GKSRGFGFVSFERHEDAQRAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKEMNGKLIYVGRAQ---KKVERQ----TELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 44/179 (24%), Positives = 79/179 (44%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q NL V + + E L+ FS G + S K++ D +S G+GFV + E+A +A
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKA 349
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLEN-LFRPYGTIITSR 143
+ E+NG + K + V+ A+ E ++A+L + + + + N + PY S
Sbjct: 350 VTEMNGRIVATKPLYVALAQRKEE--RQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 407
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPIT 202
+ R+ T ++ Q+ + Q + +H Q + GT+ A P T
Sbjct: 408 YFMAAIPQAQNRAAYYPTSQLAQLRPSPRWT--TQGVRPQH-FQNMPGTMRPSAPRPQT 463
Score = 120 (47.3 bits), Expect = 3.7e-21, Sum P(2) = 3.7e-21
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ D + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 108 (43.1 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 19/72 (26%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D+ L +F +G +++V+ D + K +GFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG + +L+ V
Sbjct: 252 NGKEMNGKLIYV 263
Score = 80 (33.2 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L + +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 185 (70.2 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG FV F A+ A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 178 (67.7 bits), Expect = 9.7e-11, P = 9.7e-11
Identities = 59/188 (31%), Positives = 94/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD +S G+GFV+Y + EDA +A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ K I V A+ E ++A L + Q E + R G + + L
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 167 (63.8 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
Identities = 46/172 (26%), Positives = 89/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D +G SKG GFV + +H +A A++E+NG
Sbjct: 218 LSVKVMRDP----------NGK------SKGFGFVSYEKHEDANKAVEEMNG 253
Score = 132 (51.5 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RDP K KGFGFV +++A A++ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFVSYEKHEDANKAVEEM 251
Query: 334 NGYALGDRLLQV 345
NG + +++ V
Sbjct: 252 NGKEISGKIIFV 263
Score = 125 (49.1 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGSKPLYVALAQRK 371
Score = 106 (42.4 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 31/88 (35%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG+ FV +
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 72 (30.4 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G +++ R+ C M I + S G
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRV-CRDM--------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+V F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YVNFQQPADAERALDTMNFDVIKG--KPIRIMWS 87
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 185 (70.2 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG FV F A+ A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 178 (67.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 59/188 (31%), Positives = 94/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD +S G+GFV+Y + EDA +A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ K I V A+ E ++A L + Q E + R G + + L
Sbjct: 250 EMNGKEISGKIIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 167 (63.8 bits), Expect = 3.9e-18, Sum P(2) = 3.9e-18
Identities = 46/172 (26%), Positives = 89/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D +G SKG GFV + +H +A A++E+NG
Sbjct: 218 LSVKVMRDP----------NGK------SKGFGFVSYEKHEDANKAVEEMNG 253
Score = 132 (51.5 bits), Expect = 5.0e-21, Sum P(2) = 5.0e-21
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RDP K KGFGFV +++A A++ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFVSYEKHEDANKAVEEM 251
Query: 334 NGYALGDRLLQV 345
NG + +++ V
Sbjct: 252 NGKEISGKIIFV 263
Score = 125 (49.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGSKPLYVALAQRK 371
Score = 106 (42.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG+ FV +
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 72 (30.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G +++ R+ C M I + S G
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRV-CRDM--------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+V F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YVNFQQPADAERALDTMNFDVIKG--KPIRIMWS 87
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 195 (73.7 bits), Expect = 5.0e-21, Sum P(3) = 5.0e-21
Identities = 47/170 (27%), Positives = 89/170 (52%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+++L V + ++T+ L LFSS+G+V S ++ RD T +SLGY +VNY T ERA+
Sbjct: 41 SASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERAL 100
Query: 86 IELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
ELN ++ K ++ +++ P+ + N+++ L + + L + F +G I++ +
Sbjct: 101 DELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCK 160
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+ D+ +SKG GFV + A +A++ +NG +
Sbjct: 161 VAQDEFG----------------VSKGYGFVHYETAEAANNAIKHVNGML 194
Score = 164 (62.8 bits), Expect = 4.3e-17, Sum P(3) = 4.3e-17
Identities = 49/171 (28%), Positives = 82/171 (47%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + + + L F++ G + SCK+ +D+ S GYGFV+Y E A AI
Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGV-SKGYGFVHYETAEAANNAIKH 189
Query: 88 LNGLKLQNKSIKVSYA-----RPSS-EAIKR--ANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L +K + V + R S E +K N+Y+ + + E+ LF +G I
Sbjct: 190 VNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEI 249
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190
++ + D SE S+G GFV F+ H A+ A++E+N
Sbjct: 250 TSATLSRD---SEGK-------------SRGFGFVNFSTHESAQAAVEEMN 284
Score = 124 (48.7 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 42/196 (21%), Positives = 84/196 (42%)
Query: 8 YNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQS 67
++ ++ R + ++ +N+ + + + EE + LF GE+ S L RD + +S
Sbjct: 204 HHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRD-SEGKS 262
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQE 127
G+GFVN+ E A+ A+ E+N +++++ + V A+ E + L K
Sbjct: 263 RGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE-------LRKQYEAA 315
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVS--GTPEIPQISKGIGFVRF-NQHIEAEH 184
+E + G + + L D + + +R GT ++ + V E +
Sbjct: 316 RMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTAPVETATPESETKE 375
Query: 185 AMQELNGTIPEGASEP 200
+ + N EG EP
Sbjct: 376 SANKENEKAAEGEKEP 391
Score = 107 (42.7 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I++ N+ PE ED +LF FG + + + RD + K +GFGFV + ++ A A++ +
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEG-KSRGFGFVNFSTHESAQAAVEEM 283
Query: 334 NGYALGDRLLQV 345
N + + L V
Sbjct: 284 NDKEVRSQKLYV 295
Score = 84 (34.6 bits), Expect = 5.0e-21, Sum P(3) = 5.0e-21
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRD 306
++V NL + +D+ L +LFGP+G + + KV+RD
Sbjct: 328 LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRD 360
Score = 74 (31.1 bits), Expect = 5.0e-21, Sum P(3) = 5.0e-21
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 311 KCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K KGFGFVC ++ DEA A+ +N + + L V+ K
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
Score = 64 (27.6 bits), Expect = 7.4e-06, Sum P(3) = 7.4e-06
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L LF G + + R+ D + ++ G
Sbjct: 42 ASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSL---------------GYA 86
Query: 173 FVRFNQHIEAEHAMQELNGTIPEG 196
+V +N E A+ ELN T+ +G
Sbjct: 87 YVNYNDTAHGERALDELNYTLIKG 110
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 198 (74.8 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
Identities = 50/169 (29%), Positives = 90/169 (53%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F H AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETHEAAERAIEKMNGML 162
Score = 193 (73.0 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 53/172 (30%), Positives = 90/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETHEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAIKRA------NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA A N+Y+ + M E L+ +F YG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ R++ D SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSIRVMTDD----------SGK------SKGFGFVSFERHEDAQRAVDEMNG 253
Score = 173 (66.0 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 55/188 (29%), Positives = 93/188 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E+L+ +F G S +++ D + +S G+GFV++ R EDA+RA+
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDS-GKSKGFGFVSFERHEDAQRAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ K + V A+ E + L + Q + + R G + + L
Sbjct: 250 EMNGKEMNGKQVYVGRAQKKGER-------QTELKRKFEQMKQDRMTRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 117 (46.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 33/88 (37%), Positives = 46/88 (52%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV ++
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETHE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 116 (45.9 bits), Expect = 5.3e-21, Sum P(2) = 5.3e-21
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 100 (40.3 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 19/72 (26%), Positives = 40/72 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L ++F +G +++V+ D + K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKGFGFVSFERHEDAQRAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG + + + V
Sbjct: 252 NGKEMNGKQVYV 263
Score = 77 (32.2 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 25/92 (27%), Positives = 41/92 (44%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ D M ++
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSL---------- 52
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
G +V F Q +AE A+ +N + +G
Sbjct: 53 -----GYAYVNFQQPADAERALDTMNFDVIKG 79
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 193 (73.0 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 190 (71.9 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 53/172 (30%), Positives = 92/172 (53%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 179 (68.1 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 122 (48.0 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L +LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 116 (45.9 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 77 (32.2 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 193 (73.0 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 190 (71.9 bits), Expect = 5.4e-20, Sum P(2) = 5.4e-20
Identities = 53/172 (30%), Positives = 92/172 (53%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 179 (68.1 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 122 (48.0 bits), Expect = 5.4e-21, Sum P(2) = 5.4e-21
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L +LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 116 (45.9 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 77 (32.2 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 185 (70.2 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 50/172 (29%), Positives = 87/172 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T+ S Y +VN+ T+DAE A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N++V L K + + L + +G I++ +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+CD EN G SKG GFV F H AE A++++NG + G
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETHEAAERAIKKMNGMLLNG 165
Score = 180 (68.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 52/172 (30%), Positives = 90/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V + +++ + L S+ G + SC ++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 137 (53.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 48/163 (29%), Positives = 80/163 (49%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+ E
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 88 LNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCD 147
+NG +L K I V A+ + ++R + L + Q + + R + + L D
Sbjct: 251 MNGKELNGKQIYVGRAQ---KKVERQ----TELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 148 KMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEA 182
+ E +R S GT ++ SKG GFV F+ EA
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEA 346
Score = 120 (47.3 bits), Expect = 5.6e-21, Sum P(2) = 5.6e-21
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 96 (38.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 31/88 (35%), Positives = 42/88 (47%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IFV NL + L+ FG + + VV D KG+GFV ++
Sbjct: 92 SLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L R + V FK+ K
Sbjct: 150 AAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Score = 94 (38.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEA 326
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEA 346
Score = 74 (31.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 27/92 (29%), Positives = 41/92 (44%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ RI D + S G
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITS--------G---- 50
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
S +V F +AEHA+ +N + +G
Sbjct: 51 ---SSNYAYVNFQHTKDAEHALDTMNFDVIKG 79
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 185 (70.2 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG FV F A+ A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 179 (68.1 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 59/188 (31%), Positives = 95/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD + +S G+GFV+Y + EDA +A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ K I V A+ E ++A L + Q E + R G + + L
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 170 (64.9 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 47/172 (27%), Positives = 89/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG SKG GFV + +H +A A++E+NG
Sbjct: 218 LSVKVMRDP----------SGK------SKGFGFVSYEKHEDANKAVEEMNG 253
Score = 131 (51.2 bits), Expect = 6.0e-21, Sum P(2) = 6.0e-21
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RDP K KGFGFV +++A A++ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHEDANKAVEEM 251
Query: 334 NGYALGDRLLQV 345
NG + +++ V
Sbjct: 252 NGKEISGKVIFV 263
Score = 125 (49.1 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGSKPLYVALAQRK 371
Score = 106 (42.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG+ FV +
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 72 (30.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G +++ R+ C M I + S G
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRV-CRDM--------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+V F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YVNFQQPADAERALDTMNFDVIKG--KPIRIMWS 87
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 193 (73.0 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 52/176 (29%), Positives = 94/176 (53%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S V E +++L V + ++ + L +FS +G+V S ++ RD + +SLGY +VNY++ E
Sbjct: 45 SGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYE 104
Query: 80 DAERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYG 137
D E+AI ELN ++ + ++ +++ PS+ N+++ L + + L + F +G
Sbjct: 105 DGEKAIEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFG 164
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
I++ C K+A T E Q SK GFV + AE A++ +NG +
Sbjct: 165 KILS----C-KVA----------TDEFGQ-SKCFGFVHYETAEAAEAAIENVNGML 204
Score = 168 (64.2 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 55/173 (31%), Positives = 86/173 (49%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+ N+ + + + + L FS+ G++ SCK+ D+ QS +GFV+Y E AE AI
Sbjct: 139 DGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEF-GQSKCFGFVHYETAEAAEAAI 197
Query: 86 IELNGLKLQNKSIKVSYA-----RPSS-EAIKR--ANLYVSGLPKHMTQEDLENLFRPYG 137
+NG+ L ++ + V R S E +K N+YV + + ++E E LF P+G
Sbjct: 198 ENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFG 257
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190
I TS I +K ++ +S KG GFV F H A A++ELN
Sbjct: 258 KI-TS-IYLEK--DQDGKS------------KGFGFVNFEDHESAVKAVEELN 294
Score = 148 (57.2 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 55/205 (26%), Positives = 93/205 (45%)
Query: 11 TQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGY 70
++ R + ++ +N+ V + ++E + LFS G++ S L +D+ +S G+
Sbjct: 217 SKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQD-GKSKGF 275
Query: 71 GFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLE 130
GFVN+ E A +A+ ELN ++ + I V A+ E ++ L K LE
Sbjct: 276 GFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEE-------LKKQYEAVRLE 328
Query: 131 NLFRPYGTIITSRILCDKMASENVRSFVS--GTPEIPQI-------SKGIGFVRFNQHIE 181
L + G + + L D + SE + GT ++ SKG GFV F E
Sbjct: 329 KLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEE 388
Query: 182 AEHAMQELNGTIPEGASEPITVKFA 206
A A+ E+N + G +P+ V A
Sbjct: 389 ATKAITEMNTRMING--KPLYVALA 411
Score = 121 (47.7 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV NL + L + F PFG + + KV+ D + K KGFGFVC T +EA AI +
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEM 396
Query: 334 NGYALGDRLLQVSFKTHK 351
N + + L V+ K
Sbjct: 397 NTRMINGKPLYVALAQRK 414
Score = 103 (41.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 28/79 (35%), Positives = 39/79 (49%)
Query: 263 PPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTN 322
P G G IF+ NL P ++ L F FG + + KV D + + K FGFV
Sbjct: 132 PSARRSGDG-NIFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYET 189
Query: 323 YDEAVFAIQSLNGYALGDR 341
+ A AI+++NG L DR
Sbjct: 190 AEAAEAAIENVNGMLLNDR 208
Score = 102 (41.0 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I+V N+ + +LF PFG + ++ + +D Q K KGFGFV +++ AV A++ L
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKD-QDGKSKGFGFVNFEDHESAVKAVEEL 293
Query: 334 NGYALGDRLLQV 345
N + + + V
Sbjct: 294 NDKEINGQKIYV 305
Score = 63 (27.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 22/91 (24%), Positives = 42/91 (46%)
Query: 106 SSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIP 165
S A A+LYV L + + L +F P G + + R+ D ++ +++
Sbjct: 45 SGVAENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSL----------- 93
Query: 166 QISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
G +V ++++ + E A++ELN EG
Sbjct: 94 ----GYAYVNYHKYEDGEKAIEELNYNPIEG 120
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 193 (73.0 bits), Expect = 7.0e-21, Sum P(2) = 7.0e-21
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 191 (72.3 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
Identities = 53/172 (30%), Positives = 93/172 (54%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 143 (55.4 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 47/159 (29%), Positives = 80/159 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFN 177
D + E +R S GT ++ SKG GFV F+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFS 341
Score = 120 (47.3 bits), Expect = 7.0e-21, Sum P(2) = 7.0e-21
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 114 (45.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 85 (35.0 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC + Y + + +++++
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFS-YMQRMASVRAV 352
Score = 77 (32.2 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Score = 41 (19.5 bits), Expect = 9.4e-07, Sum P(2) = 9.4e-07
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 164 IPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKF-ANSP 209
+PQ G QH+ A+ + + EP+T A++P
Sbjct: 468 VPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAP 514
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 185 (70.2 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG FV F A+ A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 179 (68.1 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 59/188 (31%), Positives = 95/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD + +S G+GFV+Y + EDA +A+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ K I V A+ E ++A L + Q E + R G + + L
Sbjct: 250 EMNGKEISGKVIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 171 (65.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 47/172 (27%), Positives = 90/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E+L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG SKG GFV + +H +A A++E+NG
Sbjct: 218 LSVKVMRDP----------SGK------SKGFGFVSYEKHEDANKAVEEMNG 253
Score = 130 (50.8 bits), Expect = 7.6e-21, Sum P(2) = 7.6e-21
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RDP K KGFGFV +++A A++ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHEDANKAVEEM 251
Query: 334 NGYALGDRLLQV 345
NG + +++ V
Sbjct: 252 NGKEISGKVIFV 263
Score = 125 (49.1 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGSKPLYVALAQRK 371
Score = 106 (42.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG+ FV +
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 72 (30.4 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G +++ R+ C M I + S G
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRV-CRDM--------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+V F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YVNFQQPADAERALDTMNFDVIKG--KPIRIMWS 87
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 193 (73.0 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 191 (72.3 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 53/172 (30%), Positives = 93/172 (54%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 120 (47.3 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 116 (45.9 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 77 (32.2 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 193 (73.0 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 191 (72.3 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 53/172 (30%), Positives = 93/172 (54%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 120 (47.3 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 116 (45.9 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 77 (32.2 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 193 (73.0 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 191 (72.3 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 53/172 (30%), Positives = 93/172 (54%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 120 (47.3 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 116 (45.9 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 77 (32.2 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 193 (73.0 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 191 (72.3 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 53/172 (30%), Positives = 93/172 (54%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 120 (47.3 bits), Expect = 8.8e-21, Sum P(2) = 8.8e-21
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 116 (45.9 bits), Expect = 2.3e-20, Sum P(2) = 2.3e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 77 (32.2 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 169 (64.5 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
Identities = 53/186 (28%), Positives = 89/186 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V +P+ + +++L+ LF G + +++D T G + + R ++ E A
Sbjct: 51 LFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGLRWWTHIRRDNPEEAPAAA 110
Query: 89 NG---LKLQNKS-IKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
G L LQ +K+ + PS E ++ L+V L K ++ED+ LF+P+G I +
Sbjct: 111 GGQRELGLQRPGGVKLPPSSPSGEGDRK--LFVGMLNKQQSEEDVLRLFQPFGVIDECTV 168
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPIT 202
L S G FV+F+ H EA+ A+ L+G T+P GAS +
Sbjct: 169 LRGPDGSSKA---------------GCAFVKFSSHTEAQAAIHALHGSQTMP-GASSSLV 212
Query: 203 VKFANS 208
VKFA++
Sbjct: 213 VKFADT 218
Score = 144 (55.7 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
Identities = 35/92 (38%), Positives = 50/92 (54%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
+L + G C +F+Y+L E D L Q+F PFG + + KV D T + K FGFV
Sbjct: 392 LLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVS 451
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
N A AIQ++NG+ +G + L+V K K
Sbjct: 452 FDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 483
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL +F G + S K+ D+ T QS +GFV++ A+ A
Sbjct: 402 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTA 461
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 462 IQAMNGFQIGMKRLKVQLKRP 482
Score = 88 (36.0 bits), Expect = 5.6e-12, Sum P(2) = 5.6e-12
Identities = 37/162 (22%), Positives = 64/162 (39%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S E + L V + + ++E++ LF G ++ C ++R + G FV +
Sbjct: 130 SPSGEGDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHT 189
Query: 80 DAERAIIELNGLKLQ---NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPY 136
+A+ AI L+G + + S+ V +A E R + G +T L F PY
Sbjct: 190 EAQAAIHALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPS-LTLPFSPY 248
Query: 137 GTIITSRILCDKMASENVRSFVS-GTPEIPQISKGIGFVRFN 177
+ + S++S G P + IG V N
Sbjct: 249 SAYAQALMQQQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLN 290
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 193 (73.0 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 191 (72.3 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 53/172 (30%), Positives = 93/172 (54%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 178 (67.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 120 (47.3 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 116 (45.9 bits), Expect = 2.4e-20, Sum P(2) = 2.4e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 77 (32.2 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 190 (71.9 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 53/173 (30%), Positives = 85/173 (49%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGE--VESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
Q ++L V + + + L LFS VG + S + RD T +SLGY +VN++ DAE
Sbjct: 182 QLTSLYVGDLAADVNEIILNELFSKVGRNAIASIHVCRDSNTLRSLGYAYVNFFNNHDAE 241
Query: 83 RAIIELNGLKLQNKSIKV--SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII 140
RA+ LN + K ++ SY P+ N++V L K + L + F +G I+
Sbjct: 242 RALDTLNYTLVHGKPCRIMWSYRDPTKRKTNVGNIFVKNLEKGVDNAMLYDTFSSFGNIL 301
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+ ++ F G ISKG G+V F + AE A++++NGT+
Sbjct: 302 SCKV-----------EFEKG------ISKGYGYVHFETNDSAEKAIEKVNGTL 337
Score = 126 (49.4 bits), Expect = 1.0e-20, Sum P(2) = 1.0e-20
Identities = 24/74 (32%), Positives = 44/74 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ N+ + +++ + F G + +K+V+D + + KGFGF+ + EA A+ SL
Sbjct: 472 LFINNIDESIDRDLIKEEFAKHGTIIGIKIVQD-ENARNKGFGFISFSEIQEAQKALDSL 530
Query: 334 NGYALGDRLLQVSF 347
NG+ G + +QVSF
Sbjct: 531 NGFTFGSKQIQVSF 544
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 23/100 (23%), Positives = 60/100 (60%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
+L +N + +++ ++ ++ F+ G + K+++D+ A++ G+GF+++ ++A++A+
Sbjct: 471 SLFINNIDESIDRDLIKEEFAKHGTIIGIKIVQDEN-ARNKGFGFISFSEIQEAQKALDS 529
Query: 88 LNGLKLQNKSIKVSYARPSSEAIK-RANLYVSGLPKHMTQ 126
LNG +K I+VS++ + I + N + + K++ Q
Sbjct: 530 LNGFTFGSKQIQVSFSNKDNNQINNKLNGNSTKITKNIIQ 569
Score = 112 (44.5 bits), Expect = 8.7e-12, Sum P(2) = 8.7e-12
Identities = 43/168 (25%), Positives = 78/168 (46%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V + + + L FSS G + SCK+ +K ++ GYG+V++ + AE+AI +
Sbjct: 275 NIFVKNLEKGVDNAMLYDTFSSFGNILSCKVEFEKGISK--GYGYVHFETNDSAEKAIEK 332
Query: 88 LNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCD 147
+NG + K I V +R +VS + ++ + + FR IT IL
Sbjct: 333 VNGTLILGKPINV----------ER---FVSKVERYKVENKV--FFRNADESITIEILQQ 377
Query: 148 KMASE--NVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
++++ + S + + SKG+G V F +A+ + E I
Sbjct: 378 ELSNRFGEIESCILKNDANGK-SKGLGLVEFKNQEDAQKILTESGALI 424
Score = 50 (22.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 168 SKGIGFVRF-NQHIEAEHAMQELNGTIPEG 196
S G +V F N H +AE A+ LN T+ G
Sbjct: 226 SLGYAYVNFFNNH-DAERALDTLNYTLVHG 254
Score = 46 (21.3 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 274 IFVYNLAPETEDNVLWQ-LFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEA 326
+F N +L Q L FG +++ ++++ K KG G V N ++A
Sbjct: 361 VFFRNADESITIEILQQELSNRFGEIESC-ILKNDANGKSKGLGLVEFKNQEDA 413
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 169 (64.5 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 56/197 (28%), Positives = 97/197 (49%)
Query: 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYY 76
Q D++ + + V +P+T ++++L+ LF G V ++RD++ QS G FV YY
Sbjct: 48 QPDID--SIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYY 105
Query: 77 RTEDAERAIIELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENL 132
+ A A L+ +K+ + I++ A + A++ L+V + K + D+ +
Sbjct: 106 TRKSALEAQNALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLM 165
Query: 133 FRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192
F PYG I RIL G P+ +S+G FV F A+ A++ ++ +
Sbjct: 166 FSPYGQIEECRIL-------------RG-PD--GLSRGCAFVTFTARQMAQSAIKSMHQS 209
Query: 193 -IPEGASEPITVKFANS 208
EG S PI VKFA++
Sbjct: 210 QTMEGCSSPIVVKFADT 226
Score = 144 (55.7 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 34/78 (43%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L E D L Q+F PFG V + KV D QT K FGFV N + AIQS+
Sbjct: 452 LFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQAAIQSM 511
Query: 334 NGYALGDRLLQVSFKTHK 351
NG+ +G + L+V K K
Sbjct: 512 NGFQIGMKRLKVQLKRSK 529
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ ++L +F G V S K+ DK T S +GFV+Y ++ A
Sbjct: 448 EGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQAA 507
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 508 IQSMNGFQIGMKRLKVQLKRSKNDS 532
Score = 107 (42.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 26/92 (28%), Positives = 47/92 (51%)
Query: 100 VSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159
VS A E + ANL++ LP+ +DL +F P+G +I++++ DK +
Sbjct: 437 VSAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTN-------- 488
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + ++ A+Q +NG
Sbjct: 489 -------LSKCFGFVSYDNPVSSQAAIQSMNG 513
Score = 97 (39.2 bits), Expect = 8.7e-13, Sum P(2) = 8.7e-13
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 95 NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENV 154
+K + S P I ++V +P+ +++ L LF PYG + +L D+ S+N
Sbjct: 36 SKKMNGSLDHPDQPDIDSIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDR--SQN- 92
Query: 155 RSFVSGTPEIPQISKGIGFVRF---NQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
P PQ SKG FV + +EA++A+ + +P G PI +K A+S
Sbjct: 93 -------P--PQ-SKGCCFVTYYTRKSALEAQNALHNMK-ILP-GMHHPIQMKPADS 137
Score = 74 (31.1 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 17/79 (21%), Positives = 39/79 (49%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L V + + + +++ +FS G++E C+++R
Sbjct: 126 MHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQIEECRILRGPD-GL 184
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + + A+ AI
Sbjct: 185 SRGCAFVTFTARQMAQSAI 203
Score = 73 (30.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV ++ + +N + +F P+G ++ +++R P +G FV T A AI+S+
Sbjct: 148 LFVGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLS-RGCAFVTFTARQMAQSAIKSM 206
Query: 334 N 334
+
Sbjct: 207 H 207
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 190 (71.9 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 49/167 (29%), Positives = 84/167 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + + +T+ L +F++VG V S ++ RD T +SLGY +VNY+ DAERA+
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 87 ELN--GLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
LN +K Q + S+ PS N++V L K + + L + F +G I++ ++
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
D+ SK GFV + A+ A++++NG
Sbjct: 136 ATDEFGK----------------SKSYGFVHYEDEESAKEAIEKVNG 166
Score = 182 (69.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 49/134 (36%), Positives = 75/134 (55%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V + +++ + L FS G + SCK+ D+ +S YGFV+Y E A+ AI +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEK 163
Query: 88 LNGLKLQNKSIKVS-YARPSSEAI---KRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
+NG++L +K++ V + + S A K NLYV P +T+ L LF PYG I TS
Sbjct: 164 VNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEI-TSM 222
Query: 144 ILCDKMASENVRSF 157
I+ KM ++N R F
Sbjct: 223 IV--KMDNKN-RKF 233
Score = 126 (49.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 242 HHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNV 301
H S + A L A +N + K+ H G +++ NL +D +L +LF PFG + +
Sbjct: 422 HQSRARRHAILKAKF-DNLNVENKNKH-QGVNLYIKNLDDGIDDIMLRELFEPFGTITSA 479
Query: 302 KVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN 334
KV+RD + + KGFGFVC + +EA A+ ++
Sbjct: 480 KVMRDEKE-QSKGFGFVCFASQEEANKAVTEMH 511
Score = 97 (39.2 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 31/105 (29%), Positives = 48/105 (45%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NL V P ++T+ L+ LF+ GE+ S + D + + F+NY E A+ A+
Sbjct: 193 TNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK---FCFINYADAESAKNAMD 249
Query: 87 ELNGLKLQNKS-IKVSYARPSSEAIKRANLYVSGLPKHMTQEDLE 130
LNG K+ + I +Y P E A SG T D +
Sbjct: 250 NLNGKKITDDGQIDETYD-PKKE---EATASTSGAANQTTGTDAD 290
Score = 70 (29.7 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V N + L QLF P+G + ++ V D + K F F+ + + A A+ +L
Sbjct: 195 LYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK---FCFINYADAESAKNAMDNL 251
Query: 334 NGYALGD 340
NG + D
Sbjct: 252 NGKKITD 258
Score = 54 (24.1 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L + +T+ L +F G + + R+ D + +++ G
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSL---------------GYA 60
Query: 173 FVRFNQHIEAEHAMQELNGTIPEG 196
+V ++ +AE A+ LN T +G
Sbjct: 61 YVNYHNLADAERALDTLNYTNIKG 84
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 190 (71.9 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 49/167 (29%), Positives = 84/167 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + + +T+ L +F++VG V S ++ RD T +SLGY +VNY+ DAERA+
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75
Query: 87 ELN--GLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
LN +K Q + S+ PS N++V L K + + L + F +G I++ ++
Sbjct: 76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
D+ SK GFV + A+ A++++NG
Sbjct: 136 ATDEFGK----------------SKSYGFVHYEDEESAKEAIEKVNG 166
Score = 182 (69.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 49/134 (36%), Positives = 75/134 (55%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V + +++ + L FS G + SCK+ D+ +S YGFV+Y E A+ AI +
Sbjct: 105 NIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEF-GKSKSYGFVHYEDEESAKEAIEK 163
Query: 88 LNGLKLQNKSIKVS-YARPSSEAI---KRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
+NG++L +K++ V + + S A K NLYV P +T+ L LF PYG I TS
Sbjct: 164 VNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFNPYGEI-TSM 222
Query: 144 ILCDKMASENVRSF 157
I+ KM ++N R F
Sbjct: 223 IV--KMDNKN-RKF 233
Score = 126 (49.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 32/93 (34%), Positives = 52/93 (55%)
Query: 242 HHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNV 301
H S + A L A +N + K+ H G +++ NL +D +L +LF PFG + +
Sbjct: 422 HQSRARRHAILKAKF-DNLNVENKNKH-QGVNLYIKNLDDGIDDIMLRELFEPFGTITSA 479
Query: 302 KVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN 334
KV+RD + + KGFGFVC + +EA A+ ++
Sbjct: 480 KVMRDEKE-QSKGFGFVCFASQEEANKAVTEMH 511
Score = 97 (39.2 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 31/105 (29%), Positives = 48/105 (45%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+NL V P ++T+ L+ LF+ GE+ S + D + + F+NY E A+ A+
Sbjct: 193 TNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK---FCFINYADAESAKNAMD 249
Query: 87 ELNGLKLQNKS-IKVSYARPSSEAIKRANLYVSGLPKHMTQEDLE 130
LNG K+ + I +Y P E A SG T D +
Sbjct: 250 NLNGKKITDDGQIDETYD-PKKE---EATASTSGAANQTTGTDAD 290
Score = 70 (29.7 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V N + L QLF P+G + ++ V D + K F F+ + + A A+ +L
Sbjct: 195 LYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK---FCFINYADAESAKNAMDNL 251
Query: 334 NGYALGD 340
NG + D
Sbjct: 252 NGKKITD 258
Score = 54 (24.1 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L + +T+ L +F G + + R+ D + +++ G
Sbjct: 16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSL---------------GYA 60
Query: 173 FVRFNQHIEAEHAMQELNGTIPEG 196
+V ++ +AE A+ LN T +G
Sbjct: 61 YVNYHNLADAERALDTLNYTNIKG 84
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 185 (70.2 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG FV F A+ A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYAFVHFETQEAADKAIEKMNGML 162
Score = 178 (67.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 59/188 (31%), Positives = 95/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD + +S G+GFV+Y + EDA +A+
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ K I V A+ E ++A L + Q E + R G + + L
Sbjct: 250 EMNGKEITGKVIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 171 (65.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 47/172 (27%), Positives = 90/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A++AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E+L+ LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG SKG GFV + +H +A A++E+NG
Sbjct: 218 LSVKVMRDP----------SGK------SKGFGFVSYEKHEDANKAVEEMNG 253
Score = 128 (50.1 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RDP K KGFGFV +++A A++ +
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHEDANKAVEEM 251
Query: 334 NGYALGDRLLQV 345
NG + +++ V
Sbjct: 252 NGKEITGKVIFV 263
Score = 125 (49.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGSKPLYVALAQRK 371
Score = 106 (42.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG+ FV +
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 72 (30.4 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G +++ R+ C M I + S G
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRV-CRDM--------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+V F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YVNFQQPADAERALDTMNFDVIKG--KPIRIMWS 87
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 191 (72.3 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIEKMNGML 162
Score = 191 (72.3 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 53/172 (30%), Positives = 93/172 (54%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 120 (47.3 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 116 (45.9 bits), Expect = 4.1e-20, Sum P(2) = 4.1e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 75 (31.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 27/92 (29%), Positives = 41/92 (44%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 176 (67.0 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 62/198 (31%), Positives = 97/198 (48%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
NE+ L V VP+ MT+ +L LF V +I++KTT G F+ EDA+
Sbjct: 8 NEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEKTTRAPRGCCFLTCPTREDAD 67
Query: 83 RAIIELNGLK-LQNKS--IKVSYARPSSEAIK----RAN----LYVSGLPKHMTQEDLEN 131
+ I + K L S ++V YA E + N L+V LPK++++ ++++
Sbjct: 68 KVINSFHNKKTLPGASSPLQVKYADGELERLDVLDCSCNPEHKLFVGMLPKNVSETEVQS 127
Query: 132 LFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
LF YGTI +IL + Q SKG F+++ +A AM+ LNG
Sbjct: 128 LFSEYGTIKDLQILRGSL----------------QTSKGCLFLKYESKEQAVAAMEALNG 171
Query: 192 T-IPEGASEPITVKFANS 208
I EGA+ P+ VK+A++
Sbjct: 172 RHIMEGANVPLIVKWADT 189
Score = 130 (50.8 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 36/106 (33%), Positives = 49/106 (46%)
Query: 246 RFKFAPLTADLLNNSMLPPKSLHGSGWC---IFVYNLAPETEDNVLWQLFGPFGAVQNVK 302
R ++ + NN P SL G +F+YN+ E ED L F PFG V + K
Sbjct: 310 RLPLTTVSPGISNNGTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAK 369
Query: 303 VVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFK 348
V D T K FGF+ + A AI ++NG L + L+V K
Sbjct: 370 VFVDKATGISKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLK 415
Score = 127 (49.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 31/100 (31%), Positives = 50/100 (50%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSL 68
N S S+ Q++ +NL + +P+ +EL F G+V S K+ DK T S
Sbjct: 322 NNGTSIPSSLQTE-GPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISK 380
Query: 69 GYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE 108
+GF++Y A+ AI +NG +L K +KV R + +
Sbjct: 381 CFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKRDNGQ 420
Score = 82 (33.9 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 30/107 (28%), Positives = 49/107 (45%)
Query: 103 ARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTP 162
A + E +R L+V +PKHMT+ L LFR + + I+ +K T
Sbjct: 2 AEETMENEERVKLFVGQVPKHMTEIQLLTLFREFSIVNEVNIIKEK------------TT 49
Query: 163 EIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITVKFAN 207
P +G F+ +A+ + + T+P GAS P+ VK+A+
Sbjct: 50 RAP---RGCCFLTCPTREDADKVINSFHNKKTLP-GASSPLQVKYAD 92
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 185 (70.2 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG FV F A+ A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYAFVHFETQDAADRAIEKMNGML 162
Score = 175 (66.7 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
Identities = 48/172 (27%), Positives = 86/172 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ + A+RAI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQDAADRAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ M E L+ LF YG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SKG GFV F +H +A A++E+NG
Sbjct: 218 LSVKVMTDPTGK----------------SKGFGFVSFEKHEDANKAVEEMNG 253
Score = 174 (66.3 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 58/188 (30%), Positives = 92/188 (48%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + M E L+ LFS G+ S K++ D T +S G+GFV++ + EDA +A+
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPT-GKSKGFGFVSFEKHEDANKAVE 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG + K + V A+ E ++A L + Q E + R G + + L
Sbjct: 250 EMNGKDINGKMVFVGRAQKKVE--RQAEL-----KRRFEQLKQERISRYQGVNLYIKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 125 (49.1 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGSKPLYVALAQRK 371
Score = 121 (47.7 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 24/72 (33%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L +LF +G +VKV+ DP T K KGFGFV +++A A++ +
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKGFGFVSFEKHEDANKAVEEM 251
Query: 334 NGYALGDRLLQV 345
NG + +++ V
Sbjct: 252 NGKDINGKMVFV 263
Score = 110 (43.8 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG+ FV D
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQD 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AADRAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 71 (30.1 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G +++ R+ C M I + S G
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRV-CRDM--------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+V F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YVNFQQPADAERALDTMNFDVIKG--KPIRIMWS 87
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 191 (72.3 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 53/172 (30%), Positives = 93/172 (54%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 55 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 112
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 113 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 172
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 173 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 208
Score = 178 (67.7 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 204
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 205 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 257
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 258 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 315
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 316 KPLYVALA 323
Score = 156 (60.0 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 40/132 (30%), Positives = 71/132 (53%)
Query: 64 TAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLP 121
T +SLGY +VN+ + DAERA+ +N ++ K +++ +++ PS N+++ L
Sbjct: 3 TRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLD 62
Query: 122 KHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIE 181
K + + L + F +G I++ +++CD EN G SKG GFV F
Sbjct: 63 KSIDNKALYDTFSAFGNILSCKVVCD----EN------G-------SKGYGFVHFETQEA 105
Query: 182 AEHAMQELNGTI 193
AE A++++NG +
Sbjct: 106 AERAIEKMNGML 117
Score = 120 (47.3 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 148 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 206
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 207 NGKELNGKQIYV 218
Score = 116 (45.9 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 251 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 308
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 309 NGRIVATKPLYVALAQRK 326
Score = 114 (45.2 bits), Expect = 9.9e-05, Sum P(2) = 9.9e-05
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 47 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 104
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 105 AAERAIEKMNGMLLNDRKVFVGRFKSRK 132
Score = 53 (23.7 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 164 IPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
I + S G +V F Q +AE A+ +N + +G +P+ + ++
Sbjct: 2 ITRRSLGYAYVNFQQPADAERALDTMNFDVIKG--KPVRIMWS 42
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 184 (69.8 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG FV F A+ A++++NG +
Sbjct: 132 VCD----EN------G-------SKGYAFVHFETQDAADRAIEKMNGML 163
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 58/188 (30%), Positives = 93/188 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + M + L+ LF G+ S K++ D T +S G+GFV+Y + EDA +A+
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPT-GKSRGFGFVSYEKHEDANKAVE 250
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K++ V A+ E ++A L + Q E + R G + + L
Sbjct: 251 EMNGTELNGKTVFVGRAQKKME--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 303
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 304 DTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 361
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 362 KPLYVALA 369
Score = 171 (65.3 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 46/173 (26%), Positives = 87/173 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ + A+RAI +
Sbjct: 101 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQDAADRAIEK 158
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ M + L+ LF YG
Sbjct: 159 MNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKT 218
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192
++ +++ D S+G GFV + +H +A A++E+NGT
Sbjct: 219 LSVKVMTDPTGK----------------SRGFGFVSYEKHEDANKAVEEMNGT 255
Score = 125 (49.1 bits), Expect = 3.4e-20, Sum P(2) = 3.4e-20
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEM 354
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 355 NGRIVGSKPLYVALAQRK 372
Score = 123 (48.4 bits), Expect = 0.00015, P = 0.00015
Identities = 34/117 (29%), Positives = 62/117 (52%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q NL + + T+ E+L+ FS G + S K++ ++ +S G+GFV + E+A +A
Sbjct: 293 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCFSSPEEATKA 350
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKR-ANLY---VSGLPKHMTQEDLENLFRPYG 137
+ E+NG + +K + V+ A+ E N Y ++G+ + M + N F+P G
Sbjct: 351 VTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRIAGM-RAMPANAIINQFQPAG 406
Score = 116 (45.9 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L +LF +G +VKV+ DP T K +GFGFV +++A A++ +
Sbjct: 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRGFGFVSYEKHEDANKAVEEM 252
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 253 NGTELNGKTVFV 264
Score = 110 (43.8 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG+ FV D
Sbjct: 93 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQD 150
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 151 AADRAIEKMNGMLLNDRKVFVGRFKSRK 178
Score = 72 (30.4 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G +++ R+ C M I + S G
Sbjct: 12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRV-CRDM--------------ITRRSLGYA 56
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+V F Q +AE A+ +N + +G +PI + ++
Sbjct: 57 YVNFQQPADAERALDTMNFDVVKG--KPIRIMWS 88
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 162 (62.1 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 58/219 (26%), Positives = 110/219 (50%)
Query: 2 MKHEEMY--NTTQS--HRSTYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESC 56
M++EE+ N T + + + SD + ++ + V +P++ +++EL+ LF G V
Sbjct: 10 MRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQI 69
Query: 57 KLIRDKTT--AQSLGYGFVNYYRTE---DAERAIIELNGLKLQNKSIKVSYA-RPSSEAI 110
++RD++ QS G FV +Y + +A+ A+ + L + I++ A S A+
Sbjct: 70 NVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAV 129
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
+ L++ + K + D+ +F P+G I RIL G P+ +S+G
Sbjct: 130 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRIL-------------RG-PD--GLSRG 173
Query: 171 IGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVKFANS 208
FV F+ A++A++ ++ + EG S PI VKFA++
Sbjct: 174 CAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADT 212
Score = 147 (56.8 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 401 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 460
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 461 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 502
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 421 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 480
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 481 IQAMNGFQIGMKRLKVQLKRSKNDS 505
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 162 (62.1 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 58/219 (26%), Positives = 110/219 (50%)
Query: 2 MKHEEMY--NTTQS--HRSTYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESC 56
M++EE+ N T + + + SD + ++ + V +P++ +++EL+ LF G V
Sbjct: 10 MRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQI 69
Query: 57 KLIRDKTT--AQSLGYGFVNYYRTE---DAERAIIELNGLKLQNKSIKVSYA-RPSSEAI 110
++RD++ QS G FV +Y + +A+ A+ + L + I++ A S A+
Sbjct: 70 NVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAV 129
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
+ L++ + K + D+ +F P+G I RIL G P+ +S+G
Sbjct: 130 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRIL-------------RG-PD--GLSRG 173
Query: 171 IGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVKFANS 208
FV F+ A++A++ ++ + EG S PI VKFA++
Sbjct: 174 CAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADT 212
Score = 147 (56.8 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 401 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 460
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 461 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 502
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 421 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 480
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 481 IQAMNGFQIGMKRLKVQLKRSKNDS 505
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 162 (62.1 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 58/219 (26%), Positives = 110/219 (50%)
Query: 2 MKHEEMY--NTTQS--HRSTYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESC 56
M++EE+ N T + + + SD + ++ + V +P++ +++EL+ LF G V
Sbjct: 10 MRNEELLLSNGTANKMNGALDHSDQPDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQI 69
Query: 57 KLIRDKTT--AQSLGYGFVNYYRTE---DAERAIIELNGLKLQNKSIKVSYA-RPSSEAI 110
++RD++ QS G FV +Y + +A+ A+ + L + I++ A S A+
Sbjct: 70 NVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNIKTLPGMHHPIQMKPADSEKSNAV 129
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
+ L++ + K + D+ +F P+G I RIL G P+ +S+G
Sbjct: 130 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRIL-------------RG-PD--GLSRG 173
Query: 171 IGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVKFANS 208
FV F+ A++A++ ++ + EG S PI VKFA++
Sbjct: 174 CAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADT 212
Score = 147 (56.8 bits), Expect = 3.6e-20, Sum P(2) = 3.6e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 401 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 460
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 461 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 502
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 421 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 480
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 481 IQAMNGFQIGMKRLKVQLKRSKNDS 505
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 176 (67.0 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 60/205 (29%), Positives = 90/205 (43%)
Query: 6 EMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
E+ +T Q D + N + V +P+T + L+ +F G V + ++RDK T+
Sbjct: 276 ELMESTSPDSIKDQPDAD--NIKMFVGQIPKTWDETRLRQMFEQFGPVHTLNVLRDKVTS 333
Query: 66 QSLGYGFVNYYRTEDAERAIIELNGLK-LQNKSIKVSYARPSSEAIKRANLYVSGLPKHM 124
S G FV YY + A RA L+ +K L + SE L+V L K
Sbjct: 334 ISRGCCFVTYYTRKAALRAQDALHNIKTLDGMHHPIQMKPADSENRNERKLFVGMLNKKY 393
Query: 125 TQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184
T+ D+ LF +GTI +L D+ SKG FV F A
Sbjct: 394 TEADVRQLFTGHGTIEECTVLRDQAGQ----------------SKGCAFVTFATKQNAIG 437
Query: 185 AMQELNGT-IPEGASEPITVKFANS 208
A++ L+ + EG S P+ VKFA++
Sbjct: 438 AIKALHQSQTMEGCSAPLVVKFADT 462
Score = 138 (53.6 bits), Expect = 3.7e-20, Sum P(2) = 3.7e-20
Identities = 38/104 (36%), Positives = 53/104 (50%)
Query: 251 PLTADLLNNSM--LPPKSLHG-SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
P+T L + + K + G G +F+Y+L E D L F PFG V + KV D
Sbjct: 784 PVTTSALQAAAAGVTGKQIEGPDGSNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDK 843
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
QT K FGFV N A AIQ+++G+ +G + L+V K K
Sbjct: 844 QTNLSKCFGFVSYDNPHSANAAIQAMHGFQIGSKRLKVQLKRSK 887
Score = 120 (47.3 bits), Expect = 0.00051, P = 0.00051
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
SNL + ++PQ +L F G V S K+ DK T S +GFV+Y A AI
Sbjct: 808 SNLFIYHLPQEFIDTDLASTFLPFGNVLSAKVFIDKQTNLSKCFGFVSYDNPHSANAAIQ 867
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIK 111
++G ++ +K +KV R S +A K
Sbjct: 868 AMHGFQIGSKRLKVQLKR-SKDAAK 891
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 190 (71.9 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 53/172 (30%), Positives = 92/172 (53%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 36 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIEK 93
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L+ LF +G
Sbjct: 94 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPA 153
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 154 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 189
Score = 179 (68.1 bits), Expect = 6.7e-11, P = 6.7e-11
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 185
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 186 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 238
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 239 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 296
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 297 KPLYVALA 304
Score = 122 (48.0 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L +LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 129 VYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 187
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 188 NGKELNGKQIYV 199
Score = 116 (45.9 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 232 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 289
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 290 NGRIVATKPLYVALAQRK 307
Score = 116 (45.9 bits), Expect = 0.00080, P = 0.00080
Identities = 42/177 (23%), Positives = 77/177 (43%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q NL V + + E L+ FS G + S K++ + +S G+GFV + E+A +A
Sbjct: 228 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKA 285
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLEN-LFRPYGTIITSR 143
+ E+NG + K + V+ A+ E ++A+L + + + + N + PY S
Sbjct: 286 VTEMNGRIVATKPLYVALAQRKEE--RQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG 343
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEP 200
+ R+ T ++ Q+++ R+ H Q + G I A P
Sbjct: 344 YFMAAIPQTQNRAAYYPTNQLAQLARPSP--RWTAQGARPHPFQNMPGAIRPAAPRP 398
Score = 89 (36.4 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 18/74 (24%), Positives = 42/74 (56%)
Query: 81 AERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGT 138
AERA+ +N ++ K +++ +++ PS N+++ L K + + L + F +G
Sbjct: 1 AERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 60
Query: 139 IITSRILCDKMASE 152
I++ +++CD+ S+
Sbjct: 61 ILSCKVVCDENGSK 74
Score = 63 (27.2 bits), Expect = 6.2e-12, Sum P(3) = 6.2e-12
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTI 193
SKG GFV F AE A++++NG +
Sbjct: 73 SKGYGFVHFETQEAAERAIEKMNGML 98
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 185 (70.2 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 60/188 (31%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD + +S G+GFV+Y + EDA +A+
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVE 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ KSI V A+ E ++A L + Q E + R G + + L
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 183 (69.5 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 50/169 (29%), Positives = 87/169 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG FV F A A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYAFVHFETQEAANKAIEKMNGML 162
Score = 171 (65.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 49/179 (27%), Positives = 90/179 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A +AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAANKAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E+L LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
++ +++ D SG SKG GFV + +H +A A++E+NG G S
Sbjct: 218 LSVKVMRD----------CSGK------SKGFGFVSYEKHEDANKAVEEMNGKEMSGKS 260
Score = 125 (49.1 bits), Expect = 4.3e-20, Sum P(2) = 4.3e-20
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGSKPLYVALAQRK 371
Score = 117 (46.2 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RD K KGFGFV +++A A++ +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSG-KSKGFGFVSYEKHEDANKAVEEM 251
Query: 334 NGYALGDRLLQV 345
NG + + + V
Sbjct: 252 NGKEMSGKSIFV 263
Score = 106 (42.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG+ FV +
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 72 (30.4 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G +++ R+ C M I + S G
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRV-CRDM--------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+V F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YVNFQQPADAERALDTMNFDVIKG--KPIRIMWS 87
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 194 (73.4 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 50/169 (29%), Positives = 89/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + Q +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A+ ++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIDKMNGML 162
Score = 191 (72.3 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 54/179 (30%), Positives = 93/179 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ M E L+ +F YG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
++ +++ D +N +S KG GFV F +H +A+ A+ E+NG G S
Sbjct: 218 LSVKVMTD----DNGKS------------KGFGFVSFERHEDAQKAVDEMNGKDMNGKS 260
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 56/188 (29%), Positives = 94/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + M E L+ +F G S K++ D +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG + KS+ V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 EMNGKDMNGKSMFVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRS-FVS-GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R F+ GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 112 (44.5 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 112 (44.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 33/88 (37%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI +NG L DR + V FK+ K
Sbjct: 150 AAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Score = 107 (42.7 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + D L ++FG +G +VKV+ D K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNG-KSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NG 335
NG
Sbjct: 252 NG 253
Score = 79 (32.9 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 27/92 (29%), Positives = 43/92 (46%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L + +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 162 (62.1 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 51/187 (27%), Positives = 94/187 (50%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTE---DAER 83
+ V +P++ +++EL+ LF G V ++RD++ QS G FV +Y + +A+
Sbjct: 117 MFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 176
Query: 84 AIIELNGLKLQNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
A+ + L + I++ A S A++ L++ + K + D+ +F PYG I
Sbjct: 177 ALHNIKTLTGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPYGQIEEC 236
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPI 201
RIL G P+ +S+G FV F+ A++A++ ++ + EG S P+
Sbjct: 237 RIL-------------RG-PD--GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPM 280
Query: 202 TVKFANS 208
VKFA++
Sbjct: 281 VVKFADT 287
Score = 148 (57.2 bits), Expect = 4.5e-20, Sum P(2) = 4.5e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 478 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQT 537
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 538 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 579
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 498 EGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 557
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 558 IQAMNGFQIGMKRLKVQLKRSKNDS 582
Score = 102 (41.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G ++++++ DK +
Sbjct: 488 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTN--------- 538
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 539 ------LSKCFGFVSYDNPVSAQAAIQAMNG 563
Score = 101 (40.6 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 41/127 (32%), Positives = 67/127 (52%)
Query: 86 IELNGLK-LQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
I+ NG N +++ S +P +AIK ++V +P+ ++++L+ LF PYG + I
Sbjct: 91 IQSNGTAGKMNGALEHS-DQPDPDAIK---MFVGQIPRSWSEKELKELFEPYGAVYQINI 146
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPI 201
L D+ S+N P PQ SKG FV F +EA++A+ + T+ G PI
Sbjct: 147 LRDR--SQN--------P--PQ-SKGCCFVTFYTRKAALEAQNALHNIK-TLT-GMHHPI 191
Query: 202 TVKFANS 208
+K A+S
Sbjct: 192 QMKPADS 198
Score = 71 (30.1 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 205 EDRKLFIGMVSKKCNENDIRVMFSPYGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 263
Query: 85 I 85
I
Sbjct: 264 I 264
Score = 63 (27.2 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F P+G ++ +++R P +G FV + A AI+++
Sbjct: 209 LFIGMVSKKCNENDIRVMFSPYGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 267
Query: 334 N 334
+
Sbjct: 268 H 268
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 225 (84.3 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 55/141 (39%), Positives = 81/141 (57%)
Query: 67 SLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQ 126
SLGYGFV + + ++A AI +LNG ++ +K +KVSYA+ SS ANLY++ L H+T
Sbjct: 151 SLGYGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQSTHANLYINRLEPHVTN 210
Query: 127 EDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAM 186
+L+ +F +G +I ++IL D P+ S+ +GFV F+Q EA A+
Sbjct: 211 ANLKEVFGSFGDVIDTKILTD--------------PDTGA-SRCVGFVHFSQRREALKAV 255
Query: 187 QELNGTIPEGASEPITVKFAN 207
+NG S PI VKFAN
Sbjct: 256 SSMNGANIPFQSTPIYVKFAN 276
Score = 108 (43.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
S ++NL +N + +T L+ +F S G+V K++ D T S GFV++ +
Sbjct: 190 SSSQSTHANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRR 249
Query: 80 DAERAIIELNGLKL--QNKSIKVSYARPSS 107
+A +A+ +NG + Q+ I V +A S
Sbjct: 250 EALKAVSSMNGANIPFQSTPIYVKFANQLS 279
Score = 99 (39.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ L P + L ++FG FG V + K++ DP T + GFV + EA+ A+ S+
Sbjct: 199 LYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSM 258
Query: 334 NG 335
NG
Sbjct: 259 NG 260
Score = 97 (39.2 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 34/118 (28%), Positives = 60/118 (50%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS----- 159
P +A+ NL V+ +PK M +L++LF +G I + +I+ ++ N S ++
Sbjct: 76 PDLDAL--TNLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGNGNSNININSNN 133
Query: 160 --GTPEIPQ-------ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
G+ S G GFV+F++ EA A+++LNG E S+P+ V +A +
Sbjct: 134 SNGSNSNNNNNNSNNNSSLGYGFVKFSKKDEAAMAIEQLNGF--EVDSKPLKVSYAQA 189
Score = 69 (29.3 bits), Expect = 4.6e-20, Sum P(2) = 4.6e-20
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
S + I + NL ++ L++LF FGA+ V+++ + Q + +Y A
Sbjct: 450 SSFPIHISNLPNNIDETFLYKLFA-FGAISGVQLLNNGQA-------IITYLDYQTVQNA 501
Query: 330 IQSLNGYALGDRLLQV 345
I +LNG + R L+V
Sbjct: 502 INTLNGKIISGRSLKV 517
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 161 (61.7 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
Identities = 56/217 (25%), Positives = 103/217 (47%)
Query: 3 KHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK 62
+HE ++T S S + L V +P+ + +++L+HLF G++ +++DK
Sbjct: 5 QHEMRASSTSSTDSNGFPVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDK 64
Query: 63 TTAQSLGYGFVNYYRTEDAERAIIELNGLKL---QNKSIKVSYA----RPSSEAIKRAN- 114
T G F+ Y + A R L+ K N++++V A RP+S K +
Sbjct: 65 YTGMHKGCAFLTYCHRDSAVRCQATLHDQKTLPGMNRAMQVKPADTDSRPASPKDKMDDK 124
Query: 115 -LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
L++ L K +++++ LF +G + D++ V G SKG F
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGEL-------DEVT---VLRGADGA------SKGCAF 168
Query: 174 VRFNQHIEAEHAMQELNG--TIPEGASEPITVKFANS 208
V++ ++A A+ L+G T+P GAS + VK+A++
Sbjct: 169 VKYKHGLDAHMAISALHGSQTMP-GASSSLVVKYADT 204
Score = 147 (56.8 bits), Expect = 4.9e-20, Sum P(2) = 4.9e-20
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
M+ P+ + G C +F+Y+L E D L Q+F PFG + + KV D T + K FGFV
Sbjct: 417 MVTPREVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVS 476
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFK 348
N + AI ++NG+ +G + L+V K
Sbjct: 477 YDNIHSSQAAITAMNGFQIGMKRLKVQLK 505
Score = 139 (54.0 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 28/82 (34%), Positives = 46/82 (56%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
NL + ++PQ EL +F+ G + S K+ D+ T QS +GFV+Y ++ AI
Sbjct: 430 NLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSYDNIHSSQAAITA 489
Query: 88 LNGLKLQNKSIKVSYARPSSEA 109
+NG ++ K +KV RP +E+
Sbjct: 490 MNGFQIGMKRLKVQLKRPRNES 511
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 185 (70.2 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 60/188 (31%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD + +S G+GFV+Y + EDA +A+
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVE 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ KSI V A+ E ++A L + Q E + R G + + L
Sbjct: 250 EMNGKEMSGKSIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 303 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 183 (69.5 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 50/169 (29%), Positives = 87/169 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G V S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K I++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG FV F A A++++NG +
Sbjct: 131 VCD----EN------G-------SKGYAFVHFETQEAANKAIEKMNGML 162
Score = 171 (65.3 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 49/179 (27%), Positives = 90/179 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A +AI +
Sbjct: 100 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAANKAIEK 157
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E+L LF +G
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
++ +++ D SG SKG GFV + +H +A A++E+NG G S
Sbjct: 218 LSVKVMRD----------CSGK------SKGFGFVSYEKHEDANKAVEEMNGKEMSGKS 260
Score = 125 (49.1 bits), Expect = 5.0e-20, Sum P(2) = 5.0e-20
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGSKPLYVALAQRK 371
Score = 117 (46.2 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RD K KGFGFV +++A A++ +
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSG-KSKGFGFVSYEKHEDANKAVEEM 251
Query: 334 NGYALGDRLLQV 345
NG + + + V
Sbjct: 252 NGKEMSGKSIFV 263
Score = 106 (42.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 31/88 (35%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG+ FV +
Sbjct: 92 SLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AANKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 72 (30.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G +++ R+ C M I + S G
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRV-CRDM--------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+V F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YVNFQQPADAERALDTMNFDVIKG--KPIRIMWS 87
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 191 (72.3 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
Identities = 50/169 (29%), Positives = 88/169 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N+++ L K + + L + F +G I++ ++
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F AE A+ ++NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAAERAIDKMNGML 162
Score = 177 (67.4 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 49/172 (28%), Positives = 88/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAAERAIDK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA RA N+Y+ + M E L+ F YG
Sbjct: 158 MNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D S+G GFV F +H +A+ A+ ++NG
Sbjct: 218 LSVKVMTDDHGK----------------SRGFGFVSFERHEDAQKAVDDMNG 253
Score = 157 (60.3 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 55/188 (29%), Positives = 93/188 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ F G S K++ D +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
++NG L K+I V A+ + ++R + L + Q + + R G + + L
Sbjct: 250 DMNGKDLNGKAIFVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 302
Query: 147 DKMASENVRS-FVS-GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R F G+ ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 115 (45.5 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 112 (44.5 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
Identities = 33/88 (37%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IF+ NL ++ L+ F FG + + KVV D KG+GFV +
Sbjct: 92 SLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI +NG L DR + V FK+ K
Sbjct: 150 AAERAIDKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L + FG +GA +VKV+ D K +GFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHG-KSRGFGFVSFERHEDAQKAVDDM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKDLNGKAIFV 263
Score = 77 (32.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 187 (70.9 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 48/172 (27%), Positives = 89/172 (51%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
+ +++L V + ++T+ L LFS +G V S ++ RD T +SLGY +VNY T D E+
Sbjct: 58 QASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEK 117
Query: 84 AIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT 141
A+ ELN ++ + ++ +++ P+ + N+++ L + + L + F +G I++
Sbjct: 118 ALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILS 177
Query: 142 SRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
++ D EN G SKG GFV + A A++ +NG +
Sbjct: 178 CKVAQD----EN------GN------SKGYGFVHYETDEAASQAIKHVNGML 213
Score = 185 (70.2 bits), Expect = 3.2e-19, Sum P(3) = 3.2e-19
Identities = 48/171 (28%), Positives = 80/171 (46%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + + + L F++ G + SCK+ +D+ S GYGFV+Y E A +AI
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDEN-GNSKGYGFVHYETDEAASQAIKH 208
Query: 88 LNGLKLQNKSIKVSYARPSSEAIKR--------ANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L K + V + P + + N+YV + +T ++ LF YG +
Sbjct: 209 VNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDV 268
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190
+S + D+ + S+G GFV F H +A A+QELN
Sbjct: 269 TSSSLARDQETGK---------------SRGFGFVNFTSHEDASKAVQELN 304
Score = 142 (55.0 bits), Expect = 5.6e-14, Sum P(3) = 5.6e-14
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQT---MTQEELQHLFSSVGEVESCK 57
++ +++Y + QS +E +N YV +T +E + LF G+V S
Sbjct: 213 LLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSS 272
Query: 58 LIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE 108
L RD+ T +S G+GFVN+ EDA +A+ ELN + +++ V A+ E
Sbjct: 273 LARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHE 323
Score = 122 (48.0 bits), Expect = 5.2e-20, Sum P(2) = 5.2e-20
Identities = 25/61 (40%), Positives = 38/61 (62%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I+V N+ PE D+ LF +G V + + RD +T K +GFGFV T++++A A+Q L
Sbjct: 244 IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQEL 303
Query: 334 N 334
N
Sbjct: 304 N 304
Score = 90 (36.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L F FG + + KV +D + KG+GFV + A AI+ +
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 334 NGYALGDRLLQV 345
NG L ++ + V
Sbjct: 210 NGMLLNEKKVYV 221
Score = 84 (34.6 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 3 KHEEMYNTTQSHRSTYQSDVNE-QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRD 61
KHE +S+ + Q ++ Q NL + + + E+L+ LFS G + S K++RD
Sbjct: 321 KHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Query: 62 KTT 64
T
Sbjct: 381 SIT 383
Score = 79 (32.9 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 311 KCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K KGFGFVC N D+A A+ +N + ++ L V+ K
Sbjct: 431 KSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRK 471
Score = 76 (31.8 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 30/119 (25%), Positives = 51/119 (42%)
Query: 82 ERAIIELN-GLKLQNKSIKVSYARPSSEAIK---RANLYVSGLPKHMTQEDLENLFRPYG 137
E+ + N G + I + PSS A A+LYV L +T+ L LF G
Sbjct: 26 EKTTVNTNVGASFTGEEIDTAGPTPSSAAPHPQASASLYVGELDPSVTEAMLFELFSQIG 85
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
++ + R+ D + ++ G +V +N + E A++ELN T+ +G
Sbjct: 86 SVASIRVCRDAVTRRSL---------------GYAYVNYNTTADGEKALEELNYTLIKG 129
Score = 75 (31.5 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
+++ NL E +D L QLF FG + + KV+RD T
Sbjct: 348 LYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSIT 383
Score = 49 (22.3 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
SKG GFV F +A A+ E+N + ++P+ V A
Sbjct: 432 SKGFGFVCFANPDDATKAVAEMNQRMVN--NKPLYVALA 468
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 160 (61.4 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 51/187 (27%), Positives = 94/187 (50%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTE---DAER 83
+ V +P++ +++EL+ LF G V ++RD++ QS G FV +Y + +A+
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 84 AIIELNGLKLQNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
A+ + L + I++ A S A++ L++ + K + D+ +F P+G I
Sbjct: 78 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPI 201
RIL G P+ +S+G FV F+ A++A++ ++ + EG S PI
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPI 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 147 (56.8 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 377 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 436
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 437 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 478
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 397 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 456
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 457 IQAMNGFQIGMKRLKVQLKRSKNDS 481
Score = 107 (42.7 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 36/108 (33%), Positives = 59/108 (54%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ ++++L+ LF PYG + +L D+ S+N P
Sbjct: 10 QPDPDAIK---MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + T+P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNIK-TLP-GMHHPIQMKPADS 99
Score = 103 (41.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G +I++++ DK +
Sbjct: 387 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN--------- 437
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 438 ------LSKCFGFVSYDNPVSAQAAIQAMNG 462
Score = 71 (30.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 106 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 164
Query: 85 I 85
I
Sbjct: 165 I 165
Score = 66 (28.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F PFG ++ +++R P +G FV + A AI+++
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 160 (61.4 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 51/187 (27%), Positives = 94/187 (50%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTE---DAER 83
+ V +P++ +++EL+ LF G V ++RD++ QS G FV +Y + +A+
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 84 AIIELNGLKLQNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
A+ + L + I++ A S A++ L++ + K + D+ +F P+G I
Sbjct: 78 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPI 201
RIL G P+ +S+G FV F+ A++A++ ++ + EG S PI
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPI 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 147 (56.8 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 381 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 440
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 441 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 482
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 401 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 460
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 461 IQAMNGFQIGMKRLKVQLKRSKNDS 485
Score = 107 (42.7 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 36/108 (33%), Positives = 59/108 (54%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ ++++L+ LF PYG + +L D+ S+N P
Sbjct: 10 QPDPDAIK---MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + T+P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNIK-TLP-GMHHPIQMKPADS 99
Score = 103 (41.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G +I++++ DK +
Sbjct: 391 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN--------- 441
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 442 ------LSKCFGFVSYDNPVSAQAAIQAMNG 466
Score = 71 (30.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 106 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 164
Query: 85 I 85
I
Sbjct: 165 I 165
Score = 66 (28.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F PFG ++ +++R P +G FV + A AI+++
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 160 (61.4 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 51/187 (27%), Positives = 94/187 (50%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTE---DAER 83
+ V +P++ +++EL+ LF G V ++RD++ QS G FV +Y + +A+
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 84 AIIELNGLKLQNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
A+ + L + I++ A S A++ L++ + K + D+ +F P+G I
Sbjct: 78 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPI 201
RIL G P+ +S+G FV F+ A++A++ ++ + EG S PI
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPI 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 147 (56.8 bits), Expect = 5.5e-20, Sum P(2) = 5.5e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 381 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 440
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 441 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 482
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 401 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 460
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 461 IQAMNGFQIGMKRLKVQLKRSKNDS 485
Score = 107 (42.7 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 36/108 (33%), Positives = 59/108 (54%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ ++++L+ LF PYG + +L D+ S+N P
Sbjct: 10 QPDPDAIK---MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + T+P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNIK-TLP-GMHHPIQMKPADS 99
Score = 103 (41.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G +I++++ DK +
Sbjct: 391 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN--------- 441
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 442 ------LSKCFGFVSYDNPVSAQAAIQAMNG 466
Score = 71 (30.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 106 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 164
Query: 85 I 85
I
Sbjct: 165 I 165
Score = 66 (28.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F PFG ++ +++R P +G FV + A AI+++
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 160 (61.4 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 51/187 (27%), Positives = 94/187 (50%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTE---DAER 83
+ V +P++ +++EL+ LF G V ++RD++ QS G FV +Y + +A+
Sbjct: 24 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 83
Query: 84 AIIELNGLKLQNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
A+ + L + I++ A S A++ L++ + K + D+ +F P+G I
Sbjct: 84 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEEC 143
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPI 201
RIL G P+ +S+G FV F+ A++A++ ++ + EG S PI
Sbjct: 144 RIL-------------RG-PD--GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPI 187
Query: 202 TVKFANS 208
VKFA++
Sbjct: 188 VVKFADT 194
Score = 147 (56.8 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 387 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 446
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 447 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 488
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 407 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 466
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 467 IQAMNGFQIGMKRLKVQLKRSKNDS 491
Score = 107 (42.7 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 36/108 (33%), Positives = 59/108 (54%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ ++++L+ LF PYG + +L D+ S+N P
Sbjct: 16 QPDPDAIK---MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDR--SQN--------P- 61
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + T+P G PI +K A+S
Sbjct: 62 -PQ-SKGCCFVTFYTRKAALEAQNALHNIK-TLP-GMHHPIQMKPADS 105
Score = 103 (41.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G +I++++ DK +
Sbjct: 397 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN--------- 447
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 448 ------LSKCFGFVSYDNPVSAQAAIQAMNG 472
Score = 71 (30.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 112 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 170
Query: 85 I 85
I
Sbjct: 171 I 171
Score = 66 (28.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F PFG ++ +++R P +G FV + A AI+++
Sbjct: 116 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 174
Query: 334 N 334
+
Sbjct: 175 H 175
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 160 (61.4 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 51/187 (27%), Positives = 94/187 (50%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTE---DAER 83
+ V +P++ +++EL+ LF G V ++RD++ QS G FV +Y + +A+
Sbjct: 18 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 84 AIIELNGLKLQNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
A+ + L + I++ A S A++ L++ + K + D+ +F P+G I
Sbjct: 78 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPI 201
RIL G P+ +S+G FV F+ A++A++ ++ + EG S PI
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPI 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 147 (56.8 bits), Expect = 5.9e-20, Sum P(2) = 5.9e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 391 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 450
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 451 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 492
Score = 123 (48.4 bits), Expect = 0.00011, P = 0.00011
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 411 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 470
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 471 IQAMNGFQIGMKRLKVQLKRSKNDS 495
Score = 107 (42.7 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 36/108 (33%), Positives = 59/108 (54%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ ++++L+ LF PYG + +L D+ S+N P
Sbjct: 10 QPDPDAIK---MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + T+P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNIK-TLP-GMHHPIQMKPADS 99
Score = 103 (41.3 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G +I++++ DK +
Sbjct: 401 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN--------- 451
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 452 ------LSKCFGFVSYDNPVSAQAAIQAMNG 476
Score = 71 (30.1 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 106 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 164
Query: 85 I 85
I
Sbjct: 165 I 165
Score = 66 (28.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F PFG ++ +++R P +G FV + A AI+++
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 187 (70.9 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 53/176 (30%), Positives = 91/176 (51%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
SD ++L V + +T+ L FSS G + S ++ RD T +SLGY VN+ +
Sbjct: 4 SDPGCPMASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPA 63
Query: 80 DAERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYG 137
DAERA+ +N ++ K +++ +++ PS N+++ L K + + L + F +G
Sbjct: 64 DAERALDTMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFG 123
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
I++ +++CD EN G SKG GFV F AE A++++NG +
Sbjct: 124 NILSCKVVCD----EN------G-------SKGHGFVHFETEEAAERAIEKMNGML 162
Score = 181 (68.8 bits), Expect = 3.2e-19, Sum P(2) = 3.2e-19
Identities = 50/172 (29%), Positives = 89/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +T+ + L FS+ G + SCK++ D+ ++ G+GFV++ E AERAI +
Sbjct: 100 NVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSK--GHGFVHFETEEAAERAIEK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEA-----IKR-ANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V +R EA K N+Y+ M + L LF +G +
Sbjct: 158 MNGMLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQV 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ G SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------GGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 169 (64.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 57/188 (30%), Positives = 94/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + M + L LF G+V S K++ D+ +S G+GFV++ R EDA++A+
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEG-GKSKGFGFVSFERHEDAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I Y P+ + + R ++ L + Q + R G + + L
Sbjct: 250 EMNGKELNGKHI---YVGPAQKKVDR---HIE-LKRKFEQVTQDRGIRYQGINLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E ++ S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 303 DGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIV--AT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 119 (46.9 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+ + G ++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +
Sbjct: 287 RGIRYQGINLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPE 344
Query: 325 EAVFAIQSLNGYALGDRLLQVSFKTHK 351
EA A+ +NG + + L V+ K
Sbjct: 345 EATKAVSEMNGRIVATKPLYVALAQRK 371
Score = 117 (46.2 bits), Expect = 9.6e-20, Sum P(2) = 9.6e-20
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N +D L LFG FG V +VKV+ D + K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKHIYV 263
Score = 107 (42.7 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ F FG + + KVV D KG GFV +
Sbjct: 92 SLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENG--SKGHGFVHFETEE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L DR + V FK+ K
Sbjct: 150 AAERAIEKMNGMLLNDRKVFVGQFKSRK 177
Score = 54 (24.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 24/94 (25%), Positives = 41/94 (43%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F G I++ R+ D I + S G
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDV---------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
V F Q +AE A+ +N + +G +P+ + ++
Sbjct: 56 SVNFEQPADAERALDTMNFDVIKG--KPVRIMWS 87
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 186 (70.5 bits), Expect = 6.8e-20, Sum P(2) = 6.8e-20
Identities = 49/173 (28%), Positives = 95/173 (54%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T++ L FS+VG V S ++ RD+ T +SLGY +VN+ + DA++A+
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRA---NLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
+N ++ KSI++ +++ + ++R+ N+++ L K + + L F +G I++S+
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAY-LRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSK 128
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
++ D Q SKG FV F A+ A++E+NG + +G
Sbjct: 129 VMSDD-----------------QGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 164
Score = 160 (61.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 49/172 (28%), Positives = 86/172 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G++ S K++ D ++ GY FV++ A+RAI E
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEE 156
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG L+ K+ K A S+A + N+Y+ M E L+++F YG
Sbjct: 157 MNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG SKG GFV F+ H A+ A++E+NG
Sbjct: 217 LSVKVMTDS----------SGK------SKGFGFVSFDSHEAAKKAVEEMNG 252
Score = 145 (56.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 55/208 (26%), Positives = 100/208 (48%)
Query: 8 YNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQS 67
+ + + +S +E + I N+ M E L+ +FS G+ S K++ D ++ +S
Sbjct: 172 FKNRKDREAELRSKASEFTNVYIKNFGGD-MDDERLKDVFSKYGKTLSVKVMTD-SSGKS 229
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQE 127
G+GFV++ E A++A+ E+NG + + I V A+ E ++A L K M ++
Sbjct: 230 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE--RQAEL------KQMFEQ 281
Query: 128 -DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI--------SKGIGFVRFNQ 178
E + G + + L D + E +R+ S I ++ SKG G + F+
Sbjct: 282 LKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSS 341
Query: 179 HIEAEHAMQELNGTIPEGASEPITVKFA 206
+A AM E+NG I S+P+++ A
Sbjct: 342 PEDATKAMTEMNGRIL--GSKPLSIALA 367
Score = 113 (44.8 bits), Expect = 0.00088, P = 0.00088
Identities = 24/80 (30%), Positives = 47/80 (58%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q L + + T+ E+L++ FSS G + K+++++ QS G+G + + EDA +A
Sbjct: 291 QGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEE--GQSKGFGLICFSSPEDATKA 348
Query: 85 IIELNGLKLQNKSIKVSYAR 104
+ E+NG L +K + ++ A+
Sbjct: 349 MTEMNGRILGSKPLSIALAQ 368
Score = 110 (43.8 bits), Expect = 6.8e-20, Sum P(2) = 6.8e-20
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L F FG++ VKV+++ + KGFG +C ++ ++A A+ +
Sbjct: 295 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG--QSKGFGLICFSSPEDATKAMTEM 352
Query: 334 NGYALGDRLLQVS 346
NG LG + L ++
Sbjct: 353 NGRILGSKPLSIA 365
Score = 105 (42.0 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L +F +G +VKV+ D + K KGFGFV +++ A A++ +
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEM 250
Query: 334 NGYALGDRLLQV 345
NG + +L+ V
Sbjct: 251 NGRDINGQLIFV 262
Score = 99 (39.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L++ F FG + + KV+ D Q KG+ FV N A AI+ +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 334 NGYAL-GDRLLQVSFKTHK 351
NG L G ++ FK K
Sbjct: 158 NGKLLKGCKVFVGRFKNRK 176
Score = 60 (26.2 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
+ A+LYV L +T EDL LFR + T+ +L ++ + ++ + S G
Sbjct: 8 RMASLYVGDLHADVT-EDL--LFRKFSTV--GPVLSIRICRD----------QVTRRSLG 52
Query: 171 IGFVRFNQHIEAEHAMQELNGTIPEGAS 198
+V F Q +A+ A+ +N I +G S
Sbjct: 53 YAYVNFLQLADAQKALDTMNFDIIKGKS 80
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 160 (61.4 bits), Expect = 6.9e-20, Sum P(2) = 6.9e-20
Identities = 51/187 (27%), Positives = 94/187 (50%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTE---DAER 83
+ V +P++ +++EL+ LF G V ++RD++ QS G FV +Y + +A+
Sbjct: 49 MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 108
Query: 84 AIIELNGLKLQNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
A+ + L + I++ A S A++ L++ + K + D+ +F P+G I
Sbjct: 109 ALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEEC 168
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPI 201
RIL G P+ +S+G FV F+ A++A++ ++ + EG S PI
Sbjct: 169 RIL-------------RG-PD--GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPI 212
Query: 202 TVKFANS 208
VKFA++
Sbjct: 213 VVKFADT 219
Score = 147 (56.8 bits), Expect = 6.9e-20, Sum P(2) = 6.9e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 414 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 473
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 474 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 515
Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 434 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 493
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 494 IQAMNGFQIGMKRLKVQLKRSKNDS 518
Score = 107 (42.7 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 36/108 (33%), Positives = 59/108 (54%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ ++++L+ LF PYG + +L D+ S+N P
Sbjct: 41 QPDPDAIK---MFVGQIPRSWSEKELKELFEPYGAVYQINVLRDR--SQN--------P- 86
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + T+P G PI +K A+S
Sbjct: 87 -PQ-SKGCCFVTFYTRKAALEAQNALHNIK-TLP-GMHHPIQMKPADS 130
Score = 103 (41.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G +I++++ DK +
Sbjct: 424 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN--------- 474
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 475 ------LSKCFGFVSYDNPVSAQAAIQAMNG 499
Score = 71 (30.1 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 137 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 195
Query: 85 I 85
I
Sbjct: 196 I 196
Score = 66 (28.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F PFG ++ +++R P +G FV + A AI+++
Sbjct: 141 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 199
Query: 334 N 334
+
Sbjct: 200 H 200
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 185 (70.2 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 50/172 (29%), Positives = 87/172 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T+ S Y +VN+ T+DAE A+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ K +++ +++ PS N++V L K + + L + +G I++ +
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+CD EN G SKG GFV F H AE A++++NG + G
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETHEAAERAIKKMNGMLLNG 165
Score = 180 (68.4 bits), Expect = 5.5e-19, Sum P(2) = 5.5e-19
Identities = 52/172 (30%), Positives = 90/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V + +++ + L S+ G + SC ++ D+ ++ GYGFV++ E AERAI +
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSK--GYGFVHFETHEAAERAIKK 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + + V +R EA RA N+Y+ + M E L++LF +G
Sbjct: 158 MNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D+ SG SKG GFV F +H +A+ A+ E+NG
Sbjct: 218 LSVKVMTDE----------SGK------SKGFGFVSFERHEDAQKAVDEMNG 253
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 57/187 (30%), Positives = 94/187 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+ E
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVDE 250
Query: 88 LNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCD 147
+NG +L K I V A+ + ++R + L + Q + + R + + L D
Sbjct: 251 MNGKELNGKQIYVGRAQ---KKVERQ----TELKRTFEQMKQDRITRYQVVNLYVKNLDD 303
Query: 148 KMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
+ E +R S GT ++ SKG GFV F+ EA A+ E+NG I A++
Sbjct: 304 GIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--ATK 361
Query: 200 PITVKFA 206
P+ V A
Sbjct: 362 PLYVALA 368
Score = 120 (47.3 bits), Expect = 8.4e-20, Sum P(2) = 8.4e-20
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 251
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 252 NGKELNGKQIYV 263
Score = 118 (46.6 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVATKPLYVALAQRK 371
Score = 96 (38.9 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 31/88 (35%), Positives = 42/88 (47%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG IFV NL + L+ FG + + VV D KG+GFV ++
Sbjct: 92 SLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHE 149
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI+ +NG L R + V FK+ K
Sbjct: 150 AAERAIKKMNGMLLNGRKVFVGQFKSRK 177
Score = 74 (31.1 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 27/92 (29%), Positives = 41/92 (44%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ RI D + S G
Sbjct: 3 PSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITS--------G---- 50
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
S +V F +AEHA+ +N + +G
Sbjct: 51 ---SSNYAYVNFQHTKDAEHALDTMNFDVIKG 79
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 158 (60.7 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 31 VNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTE---DAERAI 85
V +P++ +++EL+ LF G V ++RD++ QS G FV +Y + +A+ A+
Sbjct: 20 VGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNAL 79
Query: 86 IELNGLKLQNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+ L + I++ A S A++ L++ + K + D+ +F P+G I RI
Sbjct: 80 HNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRI 139
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITV 203
L G P+ +S+G FV F+ A++A++ ++ + EG S PI V
Sbjct: 140 L-------------RG-PD--GLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVV 183
Query: 204 KFANS 208
KFA++
Sbjct: 184 KFADT 188
Score = 147 (56.8 bits), Expect = 9.0e-20, Sum P(2) = 9.0e-20
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 377 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 436
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 437 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 478
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 397 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 456
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 457 IQAMNGFQIGMKRLKVQLKRSKNDS 481
Score = 104 (41.7 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 36/108 (33%), Positives = 58/108 (53%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK +V +P+ ++++L+ LF PYG + +L D+ S+N P
Sbjct: 10 QPDPDAIKT---FVGQIPRSWSEKELKELFEPYGAVYQINVLRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + T+P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNIK-TLP-GMHHPIQMKPADS 99
Score = 103 (41.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G +I++++ DK +
Sbjct: 387 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN--------- 437
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 438 ------LSKCFGFVSYDNPVSAQAAIQAMNG 462
Score = 71 (30.1 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 106 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 164
Query: 85 I 85
I
Sbjct: 165 I 165
Score = 66 (28.3 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F PFG ++ +++R P +G FV + A AI+++
Sbjct: 110 LFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFSTRAMAQNAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 182 (69.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 50/187 (26%), Positives = 91/187 (48%)
Query: 12 QSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYG 71
Q+ + V +++L V + ++++ L +FS +G V S ++ RD T SLGY
Sbjct: 23 QAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYA 82
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDL 129
+VN+ E +AI +LN ++ + ++ +++ PS N+++ L + + L
Sbjct: 83 YVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKAL 142
Query: 130 ENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL 189
+ F +G I++S+I D EN +S KG GFV F + A+ A+ L
Sbjct: 143 YDTFSVFGDILSSKIATD----ENGKS------------KGFGFVHFEEEGAAKEAIDAL 186
Query: 190 NGTIPEG 196
NG + G
Sbjct: 187 NGMLLNG 193
Score = 162 (62.1 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 62/218 (28%), Positives = 97/218 (44%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQNS---NLIVNYVPQTMTQEELQHLFSSVGEVESCK 57
++ +E+Y R S + E + NL V + T E+ Q LF+ G + S
Sbjct: 190 LLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSAS 249
Query: 58 LIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYV 117
L +D + G+GFVNY + EDA +A+ LN +L + + V A+ +E ++V
Sbjct: 250 LEKD-ADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNE-----RMHV 303
Query: 118 SGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRS-FVS-GTPEIPQI-------S 168
L K LE + + G + + L D + E + F GT ++ S
Sbjct: 304 --LKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 169 KGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
KG GFV F+ EA A+ E N I G +P+ V A
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAG--KPLYVAIA 397
Score = 140 (54.3 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 48/173 (27%), Positives = 80/173 (46%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+ N+ + + + + L FS G++ S K+ D+ +S G+GFV++ A+ AI
Sbjct: 125 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAAKEAI 183
Query: 86 IELNGLKLQNKSIKVS-----YARPSS-EAIKR--ANLYVSGLPKHMTQEDLENLFRPYG 137
LNG+ L + I V+ R S E K NLYV + T E + LF +G
Sbjct: 184 DALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFG 243
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN 190
I+++ + +K A + KG GFV + +H +A A++ LN
Sbjct: 244 PIVSASL--EKDADGKL--------------KGFGFVNYEKHEDAVKAVEALN 280
Score = 121 (47.7 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 28/78 (35%), Positives = 41/78 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV NL +D L + F P+G + + KV+R + K KGFGFVC + +EA AI
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEK 382
Query: 334 NGYALGDRLLQVSFKTHK 351
N + + L V+ K
Sbjct: 383 NQQIVAGKPLYVAIAQRK 400
Score = 111 (44.1 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 250 APLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
AP + +S L H + ++V N+ ET D +LF FG + + + +D
Sbjct: 199 APHLSRKERDSQLEETKAHYTN--LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADG 256
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYAL-GDRL 342
K KGFGFV +++AV A+++LN L G++L
Sbjct: 257 -KLKGFGFVNYEKHEDAVKAVEALNDSELNGEKL 289
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 186 (70.5 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 49/173 (28%), Positives = 95/173 (54%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T++ L FS+VG V S ++ RD+ T +SLGY +VN+ + DA++A+
Sbjct: 68 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 127
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRA---NLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
+N ++ KSI++ +++ + ++R+ N+++ L K + + L F +G I++S+
Sbjct: 128 TMNFDIIKGKSIRLMWSQRDAY-LRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSK 186
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
++ D Q SKG FV F A+ A++E+NG + +G
Sbjct: 187 VMSDD-----------------QGSKGYAFVHFQNQSAADRAIEEMNGKLLKG 222
Score = 160 (61.4 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
Identities = 49/172 (28%), Positives = 86/172 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G++ S K++ D ++ GY FV++ A+RAI E
Sbjct: 157 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSK--GYAFVHFQNQSAADRAIEE 214
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG L+ K+ K A S+A + N+Y+ M E L+++F YG
Sbjct: 215 MNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKT 274
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG SKG GFV F+ H A+ A++E+NG
Sbjct: 275 LSVKVMTDS----------SGK------SKGFGFVSFDSHEAAKKAVEEMNG 310
Score = 145 (56.1 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 55/208 (26%), Positives = 100/208 (48%)
Query: 8 YNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQS 67
+ + + +S +E + I N+ M E L+ +FS G+ S K++ D ++ +S
Sbjct: 230 FKNRKDREAELRSKASEFTNVYIKNFGGD-MDDERLKDVFSKYGKTLSVKVMTD-SSGKS 287
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQE 127
G+GFV++ E A++A+ E+NG + + I V A+ E ++A L K M ++
Sbjct: 288 KGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE--RQAEL------KQMFEQ 339
Query: 128 -DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI--------SKGIGFVRFNQ 178
E + G + + L D + E +R+ S I ++ SKG G + F+
Sbjct: 340 LKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSS 399
Query: 179 HIEAEHAMQELNGTIPEGASEPITVKFA 206
+A AM E+NG I S+P+++ A
Sbjct: 400 PEDATKAMTEMNGRIL--GSKPLSIALA 425
Score = 110 (43.8 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L F FG++ VKV+++ + KGFG +C ++ ++A A+ +
Sbjct: 353 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEG--QSKGFGLICFSSPEDATKAMTEM 410
Query: 334 NGYALGDRLLQVS 346
NG LG + L ++
Sbjct: 411 NGRILGSKPLSIA 423
Score = 105 (42.0 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L +F +G +VKV+ D + K KGFGFV +++ A A++ +
Sbjct: 250 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEM 308
Query: 334 NGYALGDRLLQV 345
NG + +L+ V
Sbjct: 309 NGRDINGQLIFV 320
Score = 99 (39.9 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L++ F FG + + KV+ D Q KG+ FV N A AI+ +
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 215
Query: 334 NGYAL-GDRLLQVSFKTHK 351
NG L G ++ FK K
Sbjct: 216 NGKLLKGCKVFVGRFKNRK 234
Score = 60 (26.2 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
+ A+LYV L +T EDL LFR + T+ +L ++ + ++ + S G
Sbjct: 66 RMASLYVGDLHADVT-EDL--LFRKFSTV--GPVLSIRICRD----------QVTRRSLG 110
Query: 171 IGFVRFNQHIEAEHAMQELNGTIPEGAS 198
+V F Q +A+ A+ +N I +G S
Sbjct: 111 YAYVNFLQLADAQKALDTMNFDIIKGKS 138
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 188 (71.2 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 48/169 (28%), Positives = 94/169 (55%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + + +T++ L F++VG V S ++ RD + +SLGYG+VN+ + DA++A+
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRA--NLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ KSI++ +++ + K N+++ L K + + L F P+G I++S++
Sbjct: 70 TMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKV 129
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+ D+ G SKG GFV + A+ A++E+NG +
Sbjct: 130 MTDE----------EG-------SKGYGFVHYQDQRAADRAIEEMNGKL 161
Score = 163 (62.4 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 49/172 (28%), Positives = 88/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS G++ S K++ D+ ++ GYGFV+Y A+RAI E
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSK--GYGFVHYQDQRAADRAIEE 156
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAIKR------ANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG L++ ++ V+ +R EA R N+Y+ M E L ++F YG
Sbjct: 157 MNGKLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQT 216
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG SK GFV F+ H A++A++++NG
Sbjct: 217 LSVKVMKD----------ASGK------SKRFGFVSFDSHKAAKNAVEDMNG 252
Score = 114 (45.2 bits), Expect = 0.00068, P = 0.00068
Identities = 47/186 (25%), Positives = 86/186 (46%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + M E L+ +FS G+ S K+++D + +S +GFV++ + A+ A+
Sbjct: 190 TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKD-ASGKSKRFGFVSFDSHKAAKNAVE 248
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP-YGTIITSRIL 145
++NG + ++I V A+ E ++A L K M ++ + R + + L
Sbjct: 249 DMNGRDINGQTIFVGRAQKKVE--RQAEL------KEMFEQMKKERIRARQAAKLYIKNL 300
Query: 146 CDKMASENVRSFVSGTPEIPQI--------SKGIGFVRFNQHIEAEHAMQELNGTIPEGA 197
D + E +R S I ++ SKG G + F A AM E+NG I
Sbjct: 301 DDTIDDETLRKEFSVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRIL--G 358
Query: 198 SEPITV 203
S+P+ +
Sbjct: 359 SKPLNI 364
Score = 113 (44.8 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 28/79 (35%), Positives = 44/79 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L++ F PFG + + KV+ D + KG+GFV + A AI+ +
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG--SKGYGFVHYQDQRAADRAIEEM 157
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L D L V+ FK+ K
Sbjct: 158 NGKLLRDSTLFVARFKSRK 176
Score = 103 (41.3 bits), Expect = 2.1e-19, Sum P(2) = 2.1e-19
Identities = 22/73 (30%), Positives = 41/73 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F FG++ VKV+++ + KGFG +C + + A A+ +
Sbjct: 295 LYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAG--QSKGFGLICFFSPEAAAKAMAEM 352
Query: 334 NGYALGDRLLQVS 346
NG LG + L ++
Sbjct: 353 NGRILGSKPLNIA 365
Score = 93 (37.8 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L +F +G +VKV++D K K FGFV ++ A A++ +
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASG-KSKRFGFVSFDSHKAAKNAVEDM 250
Query: 334 NG 335
NG
Sbjct: 251 NG 252
Score = 64 (27.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
+ A+LYV L + +T++ L F G +++ RI C + S S G
Sbjct: 8 RAASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRI-CRDLISHR--------------SLG 52
Query: 171 IGFVRFNQHIEAEHAMQELNGTIPEGAS 198
G+V F Q +A+ A++ +N + +G S
Sbjct: 53 YGYVNFLQVGDAQKALETMNFDLIKGKS 80
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 151 (58.2 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 51/187 (27%), Positives = 90/187 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP++ +++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K + D+ +F P+G I
Sbjct: 78 ALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL G P+ +S+G FV F A+ A++ ++ EG S PI
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPI 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 150 (57.9 bits), Expect = 3.0e-19, Sum P(2) = 3.0e-19
Identities = 43/104 (41%), Positives = 56/104 (53%)
Query: 256 LLNNSMLPPKSLH--GS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
L N S+L +S+ GS G +F+Y+L E D L Q+F PFG V + KV D
Sbjct: 376 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK 435
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
QT K FGFV N A AIQS+NG+ +G + L+V K K
Sbjct: 436 QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 479
Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 383 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 442
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 443 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 482
Score = 105 (42.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/103 (26%), Positives = 51/103 (49%)
Query: 93 LQNKSI----KVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
L N+S+ + A E + ANL++ LP+ +DL +F P+G ++++++ DK
Sbjct: 376 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK 435
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +SK GFV ++ + A+ A+Q +NG
Sbjct: 436 QTN---------------LSKCFGFVSYDNPVSAQAAIQSMNG 463
Score = 92 (37.4 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ ++DL LF YG + +L D+ S+N P
Sbjct: 10 QPDLDAIK---MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-ILP-GMHHPIQMKPADS 99
Score = 72 (30.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F PFG ++ +++R P +G FV T A AI+++
Sbjct: 110 LFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFTTRAMAQTAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
Score = 70 (29.7 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 16/79 (20%), Positives = 38/79 (48%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + + +++ +FS G++E C+++R
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPD-GL 146
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + A+ AI
Sbjct: 147 SRGCAFVTFTTRAMAQTAI 165
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 151 (58.2 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 51/187 (27%), Positives = 90/187 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP++ +++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K + D+ +F P+G I
Sbjct: 78 ALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL G P+ +S+G FV F A+ A++ ++ EG S PI
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPI 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 150 (57.9 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 43/104 (41%), Positives = 56/104 (53%)
Query: 256 LLNNSMLPPKSLH--GS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP 307
L N S+L +S+ GS G +F+Y+L E D L Q+F PFG V + KV D
Sbjct: 380 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK 439
Query: 308 QTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
QT K FGFV N A AIQS+NG+ +G + L+V K K
Sbjct: 440 QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK 483
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 387 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 446
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 447 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 486
Score = 105 (42.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/103 (26%), Positives = 51/103 (49%)
Query: 93 LQNKSI----KVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
L N+S+ + A E + ANL++ LP+ +DL +F P+G ++++++ DK
Sbjct: 380 LYNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK 439
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +SK GFV ++ + A+ A+Q +NG
Sbjct: 440 QTN---------------LSKCFGFVSYDNPVSAQAAIQSMNG 467
Score = 92 (37.4 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 35/108 (32%), Positives = 55/108 (50%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ ++DL LF YG + +L D+ S+N P
Sbjct: 10 QPDLDAIK---MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-ILP-GMHHPIQMKPADS 99
Score = 72 (30.4 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F PFG ++ +++R P +G FV T A AI+++
Sbjct: 110 LFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLS-RGCAFVTFTTRAMAQTAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
Score = 70 (29.7 bits), Expect = 8.2e-11, Sum P(2) = 8.2e-11
Identities = 16/79 (20%), Positives = 38/79 (48%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + + +++ +FS G++E C+++R
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPD-GL 146
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + A+ AI
Sbjct: 147 SRGCAFVTFTTRAMAQTAI 165
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 201 (75.8 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 55/171 (32%), Positives = 90/171 (52%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q L V + + +T+ + LFS +G +SCK+I + T+ Y FV +Y DA A
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAA 64
Query: 85 IIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMTQEDLENLFRPYGTII 140
+ +NG K+ K +KV++A PSS+ +N ++V L +T ED+++ F P+G I
Sbjct: 65 LAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKIS 124
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+R++ D MA+ SKG GFV F ++AE+A+ + G
Sbjct: 125 DARVVKD-MATGK--------------SKGYGFVSFYNKLDAENAIVHMGG 160
Score = 200 (75.5 bits), Expect = 8.2e-14, P = 8.2e-14
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 87 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 145
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 146 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ENNTKQLRFEDVVNQSSP 202
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 262
Query: 192 TIPEG 196
T EG
Sbjct: 263 TTIEG 267
Score = 142 (55.0 bits), Expect = 4.9e-07, P = 4.9e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAP 180
Score = 85 (35.0 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 260
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 261 NGTTIEGHVVKCYWGKESP 279
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 201 (75.8 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 55/171 (32%), Positives = 90/171 (52%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q L V + + +T+ + LFS +G +SCK+I + T+ Y FV +Y DA A
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAA 64
Query: 85 IIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMTQEDLENLFRPYGTII 140
+ +NG K+ K +KV++A PSS+ +N ++V L +T ED+++ F P+G I
Sbjct: 65 LAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKIS 124
Query: 141 TSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+R++ D MA+ SKG GFV F ++AE+A+ + G
Sbjct: 125 DARVVKD-MATGK--------------SKGYGFVSFYNKLDAENAIVHMGG 160
Score = 200 (75.5 bits), Expect = 8.6e-14, P = 8.6e-14
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 87 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 145
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 146 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ENNTKQLRFEDVVNQSSP 202
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 203 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 262
Query: 192 TIPEG 196
T EG
Sbjct: 263 TTIEG 267
Score = 142 (55.0 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 159 GGQWLGGRQIRTNWATRKPPAP 180
Score = 85 (35.0 bits), Expect = 3.4e-19, Sum P(2) = 3.4e-19
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 260
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 261 NGTTIEGHVVKCYWGKESP 279
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 178 (67.7 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 44/169 (26%), Positives = 86/169 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
S+L V + +T+ L +FS +G + S ++ RD T +SLGY ++N+ + DAERA+
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKV--SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + I++ S+ P N+++ L + + L + F +G+I++S++
Sbjct: 71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+ ++ S +G GFV F H A+ A+ +NG +
Sbjct: 131 VYNEHGS-----------------RGFGFVHFETHEAAQKAINTMNGML 162
Score = 173 (66.0 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 55/188 (29%), Positives = 95/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + M ++ LQ LFS G+ +S K++RD + QS G+GF+N+ + E+A++A+
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRD-SNGQSRGFGFINFEKHEEAQKAVD 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
+NG ++ + + V A+ +E R N L + Q E R G + + L
Sbjct: 250 HMNGKEVSGQLLYVGRAQKRAE---RQN----ELKRRFEQMKQERQNRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + + ++ S G ++ SKG GFV F+ EA A+ E+NG I +
Sbjct: 303 DSINDDRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIV--GT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 154 (59.3 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 46/172 (26%), Positives = 89/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FS+ G + S K++ ++ ++ G+GFV++ E A++AI
Sbjct: 100 NIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSR--GFGFVHFETHEAAQKAINT 157
Query: 88 LNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + +R EA RA N+YV L M ++ L++LF +G
Sbjct: 158 MNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ D +G S+G GF+ F +H EA+ A+ +NG
Sbjct: 218 QSVKVMRDS----------NGQ------SRGFGFINFEKHEEAQKAVDHMNG 253
Score = 121 (47.7 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I+V NL + ++ L LF FG Q+VKV+RD + +GFGF+ ++EA A+ +
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNG-QSRGFGFINFEKHEEAQKAVDHM 251
Query: 334 NGYALGDRLLQV 345
NG + +LL V
Sbjct: 252 NGKEVSGQLLYV 263
Score = 117 (46.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D+ L ++F +G + + KV+ + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESS--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGTKPLYVALAQRK 371
Score = 110 (43.8 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IF+ NL ++ L+ F FG++ + KVV + + +GFGFV ++ A AI ++
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNE--HGSRGFGFVHFETHEAAQKAINTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRQ 177
Score = 79 (32.9 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 25/95 (26%), Positives = 47/95 (49%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
++LYV L +T+ L +F P GTI++ R+ C +A+ S G
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRV-CRDVATRR--------------SLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
++ F Q +AE A+ +N + +G +PI + +++
Sbjct: 56 YINFQQPADAERALDTMNFEMIKG--QPIRIMWSH 88
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 151 (58.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 51/187 (27%), Positives = 91/187 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP+T ++++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K T+ D+ +F +G I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL G P+ +S+G FV F A+ A++ ++ EG S P+
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPM 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 148 (57.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L E D L Q+F PFG V + KV D QT K FGFV N A AIQS+
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 334 NGYALGDRLLQVSFKTHK 351
NG+ +G + L+V K K
Sbjct: 463 NGFQIGMKRLKVQLKRSK 480
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 384 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 443
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 444 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 483
Score = 104 (41.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 100 VSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159
+ A E + ANL++ LP+ +DL +F P+G ++++++ DK +
Sbjct: 388 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-------- 439
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 440 -------LSKCFGFVSYDNPVSAQAAIQSMNG 464
Score = 95 (38.5 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 36/108 (33%), Positives = 56/108 (51%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ +++DL LF YG + IL D+ S+N P
Sbjct: 10 QPDLDAIK---MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-VLP-GMHHPIQMKPADS 99
Score = 80 (33.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + T+ +++ +FSS G++E C+++R
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GL 146
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + A+ AI
Sbjct: 147 SRGCAFVTFTTRTMAQTAI 165
Score = 64 (27.6 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F FG ++ +++R P +G FV T A AI+++
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS-RGCAFVTFTTRTMAQTAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 151 (58.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 51/187 (27%), Positives = 91/187 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP+T ++++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K T+ D+ +F +G I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL G P+ +S+G FV F A+ A++ ++ EG S P+
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPM 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 148 (57.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L E D L Q+F PFG V + KV D QT K FGFV N A AIQS+
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 334 NGYALGDRLLQVSFKTHK 351
NG+ +G + L+V K K
Sbjct: 464 NGFQIGMKRLKVQLKRSK 481
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 385 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 444
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 445 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 484
Score = 104 (41.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 100 VSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159
+ A E + ANL++ LP+ +DL +F P+G ++++++ DK +
Sbjct: 389 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-------- 440
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 441 -------LSKCFGFVSYDNPVSAQAAIQSMNG 465
Score = 95 (38.5 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 36/108 (33%), Positives = 56/108 (51%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ +++DL LF YG + IL D+ S+N P
Sbjct: 10 QPDLDAIK---MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-VLP-GMHHPIQMKPADS 99
Score = 80 (33.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + T+ +++ +FSS G++E C+++R
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GL 146
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + A+ AI
Sbjct: 147 SRGCAFVTFTTRTMAQTAI 165
Score = 64 (27.6 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F FG ++ +++R P +G FV T A AI+++
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS-RGCAFVTFTTRTMAQTAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 151 (58.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 51/187 (27%), Positives = 91/187 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP+T ++++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K T+ D+ +F +G I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL G P+ +S+G FV F A+ A++ ++ EG S P+
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPM 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 148 (57.2 bits), Expect = 4.9e-19, Sum P(2) = 4.9e-19
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L E D L Q+F PFG V + KV D QT K FGFV N A AIQS+
Sbjct: 404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463
Query: 334 NGYALGDRLLQVSFKTHK 351
NG+ +G + L+V K K
Sbjct: 464 NGFQIGMKRLKVQLKRSK 481
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 385 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 444
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 445 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 484
Score = 104 (41.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 100 VSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159
+ A E + ANL++ LP+ +DL +F P+G ++++++ DK +
Sbjct: 389 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-------- 440
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 441 -------LSKCFGFVSYDNPVSAQAAIQSMNG 465
Score = 95 (38.5 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 36/108 (33%), Positives = 56/108 (51%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ +++DL LF YG + IL D+ S+N P
Sbjct: 10 QPDLDAIK---MFVGQVPRTWSEKDLRELFEQYGAVYEINILRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-VLP-GMHHPIQMKPADS 99
Score = 80 (33.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + T+ +++ +FSS G++E C+++R
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GL 146
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + A+ AI
Sbjct: 147 SRGCAFVTFTTRTMAQTAI 165
Score = 64 (27.6 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F FG ++ +++R P +G FV T A AI+++
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS-RGCAFVTFTTRTMAQTAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 177 (67.4 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 55/188 (29%), Positives = 97/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + + ++ LQ LFS G++ S K++RD + S G+GFVN+ + E+A++A++
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDS-GHSRGFGFVNFEKHEEAQKAVV 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
+NG ++ + + V A+ + ++R N L + Q + L R G + + L
Sbjct: 250 NMNGREVSGRLLYVGRAQ---KRVERQN----ELKRRFEQMKQDRLTRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G ++ SKG GFV F+ EA A+ E+NG I +
Sbjct: 303 DSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV--GT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 176 (67.0 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
Identities = 43/169 (25%), Positives = 85/169 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY ++N+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + I++ +++ P N+++ L + + L + F +G I++ ++
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD+ S +G GFV F H A++A+ +NG +
Sbjct: 131 VCDEHGS-----------------RGFGFVHFETHEAAQNAISTMNGML 162
Score = 170 (64.9 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 46/172 (26%), Positives = 90/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FS+ G + SCK++ D+ ++ G+GFV++ E A+ AI
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSR--GFGFVHFETHEAAQNAIST 157
Query: 88 LNGLKLQNKSIKVSYARPSSE--------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + + E A++ N+YV L + ++ L++LF +G +
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKM 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG S+G GFV F +H EA+ A+ +NG
Sbjct: 218 LSVKVMRDD----------SGH------SRGFGFVNFEKHEEAQKAVVNMNG 253
Score = 122 (48.0 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I+V NL + ++ L LF FG + +VKV+RD + +GFGFV ++EA A+ ++
Sbjct: 193 IYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHS-RGFGFVNFEKHEEAQKAVVNM 251
Query: 334 NGYALGDRLLQV 345
NG + RLL V
Sbjct: 252 NGREVSGRLLYV 263
Score = 119 (46.9 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F P+G + + KV+ + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGTKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IF+ NL ++ L+ F FG + + KVV D + +GFGFV ++ A AI ++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDE--HGSRGFGFVHFETHEAAQNAISTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRR 177
Score = 72 (30.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G I++ R+ C +A+ S G
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDVATRR--------------SLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YINFQQPADAERALDTMNFEVIKG--QPIRIMWS 87
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 150 (57.9 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 51/187 (27%), Positives = 91/187 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP+T ++++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K T+ D+ +F +G I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL G P+ +S+G FV F A+ A++ ++ EG S P+
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 148 (57.2 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L E D L Q+F PFG V + KV D QT K FGFV N A AIQS+
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 334 NGYALGDRLLQVSFKTHK 351
NG+ +G + L+V K K
Sbjct: 463 NGFQIGMKRLKVQLKRSK 480
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 384 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 443
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 444 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 483
Score = 104 (41.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 100 VSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159
+ A E + ANL++ LP+ +DL +F P+G ++++++ DK +
Sbjct: 388 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-------- 439
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 440 -------LSKCFGFVSYDNPVSAQAAIQSMNG 464
Score = 94 (38.1 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 35/108 (32%), Positives = 56/108 (51%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ +++DL LF YG + +L D+ S+N P
Sbjct: 10 QPDLDAIK---MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-VLP-GMHHPIQMKPADS 99
Score = 80 (33.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + T+ +++ +FSS G++E C+++R
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GL 146
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + A+ AI
Sbjct: 147 SRGCAFVTFTTRAMAQTAI 165
Score = 63 (27.2 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F FG ++ +++R P +G FV T A AI+++
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS-RGCAFVTFTTRAMAQTAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 150 (57.9 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 51/187 (27%), Positives = 91/187 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP+T ++++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 18 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K T+ D+ +F +G I
Sbjct: 78 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 137
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL G P+ +S+G FV F A+ A++ ++ EG S P+
Sbjct: 138 RIL-------------RG-PD--GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 181
Query: 202 TVKFANS 208
VKFA++
Sbjct: 182 VVKFADT 188
Score = 148 (57.2 bits), Expect = 6.4e-19, Sum P(2) = 6.4e-19
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L E D L Q+F PFG V + KV D QT K FGFV N A AIQS+
Sbjct: 403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462
Query: 334 NGYALGDRLLQVSFKTHK 351
NG+ +G + L+V K K
Sbjct: 463 NGFQIGMKRLKVQLKRSK 480
Score = 127 (49.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ ++L +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 458
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 459 IQSMNGFQIGMKRLKVQLKRSKNDS 483
Score = 104 (41.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 100 VSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159
+ A E + ANL++ LP+ +DL +F P+G ++++++ DK +
Sbjct: 388 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-------- 439
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 440 -------LSKCFGFVSYDNPVSAQAAIQSMNG 464
Score = 94 (38.1 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 35/108 (32%), Positives = 56/108 (51%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ +++DL LF YG + +L D+ S+N P
Sbjct: 10 QPDLDAIK---MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR--SQN--------P- 55
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 56 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-VLP-GMHHPIQMKPADS 99
Score = 80 (33.2 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + T+ +++ +FSS G++E C+++R
Sbjct: 88 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GL 146
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + A+ AI
Sbjct: 147 SRGCAFVTFTTRAMAQTAI 165
Score = 63 (27.2 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ ++ + +N + +F FG ++ +++R P +G FV T A AI+++
Sbjct: 110 LFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS-RGCAFVTFTTRAMAQTAIKAM 168
Query: 334 N 334
+
Sbjct: 169 H 169
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 150 (57.9 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 51/187 (27%), Positives = 91/187 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP+T ++++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K T+ D+ +F +G I
Sbjct: 105 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 164
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL G P+ +S+G FV F A+ A++ ++ EG S P+
Sbjct: 165 RIL-------------RG-PD--GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 208
Query: 202 TVKFANS 208
VKFA++
Sbjct: 209 VVKFADT 215
Score = 148 (57.2 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L E D L Q+F PFG V + KV D QT K FGFV N A AIQS+
Sbjct: 430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489
Query: 334 NGYALGDRLLQVSFKTHK 351
NG+ +G + L+V K K
Sbjct: 490 NGFQIGMKRLKVQLKRSK 507
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 411 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 470
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 471 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 510
Score = 104 (41.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 100 VSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159
+ A E + ANL++ LP+ +DL +F P+G ++++++ DK +
Sbjct: 415 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-------- 466
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 467 -------LSKCFGFVSYDNPVSAQAAIQSMNG 491
Score = 94 (38.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 35/108 (32%), Positives = 56/108 (51%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ +++DL LF YG + +L D+ S+N P
Sbjct: 37 QPDLDAIK---MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR--SQN--------P- 82
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 83 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-VLP-GMHHPIQMKPADS 126
Score = 80 (33.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + T+ +++ +FSS G++E C+++R
Sbjct: 115 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GL 173
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + A+ AI
Sbjct: 174 SRGCAFVTFTTRAMAQTAI 192
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 164 (62.8 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 51/182 (28%), Positives = 83/182 (45%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
+ V +P+ + + + LF G V SC ++RDK+T S G FV +Y +DA A L
Sbjct: 57 MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGAL 116
Query: 89 NGLK-LQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCD 147
+ +K ++ V +E L++ L K +E+L +F +G I +L D
Sbjct: 117 HNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD 176
Query: 148 KMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVKFA 206
+ G S+G FV F A A +E++ + EG S P+ VKFA
Sbjct: 177 Q----------DGK------SRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFA 220
Query: 207 NS 208
++
Sbjct: 221 DT 222
Score = 134 (52.2 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L + D+ L F PFG + + KV D T K FGFV N A AI ++
Sbjct: 505 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 564
Query: 334 NGYALGDRLLQVSFKTHKPLP 354
NG+ +G + L+V K + P
Sbjct: 565 NGFQIGSKRLKVQLKVDRGNP 585
Score = 126 (49.4 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 29/92 (31%), Positives = 48/92 (52%)
Query: 10 TTQSHRSTYQSDVN-EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSL 68
TT + + DV +NL + ++PQ +L + F+ G + S K+ DK T S
Sbjct: 485 TTSAAQMVGNGDVKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSK 544
Query: 69 GYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100
+GFV+Y + A AI +NG ++ +K +KV
Sbjct: 545 CFGFVSYENAQSATNAISAMNGFQIGSKRLKV 576
Score = 92 (37.4 bits), Expect = 5.4e-11, Sum P(2) = 5.4e-11
Identities = 32/115 (27%), Positives = 51/115 (44%)
Query: 95 NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENV 154
+ + S + P ++AIK ++V +P+ + D LF YG++ + IL DK
Sbjct: 40 DNDVSPSPSEPDTDAIK---MFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKST---- 92
Query: 155 RSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQEL-NGTIPEGASEPITVKFANS 208
Q SKG FV F +A A L N + EG P+ +K A++
Sbjct: 93 -----------QASKGCCFVTFYHRKDAIEAQGALHNIKVIEGMHHPVQMKPADT 136
Score = 87 (35.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
ANL++ LP+ DL N F P+G I+++++ DK+ + +SK G
Sbjct: 503 ANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTN---------------LSKCFG 547
Query: 173 FVRFNQHIEAEHAMQELNG 191
FV + A +A+ +NG
Sbjct: 548 FVSYENAQSATNAISAMNG 566
Score = 81 (33.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ L+ + + L ++F FG +++ V+RD Q K +G FV TN AV A + +
Sbjct: 144 LFIGQLSKKHNEENLREIFAKFGHIEDCSVLRD-QDGKSRGCAFVTFTNRSCAVVATKEM 202
Query: 334 N 334
+
Sbjct: 203 H 203
Score = 78 (32.5 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
N L + + + +E L+ +F+ G +E C ++RD+ +S G FV + A
Sbjct: 138 NRNERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAV 196
Query: 83 RAIIELN 89
A E++
Sbjct: 197 VATKEMH 203
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 150 (57.9 bits), Expect = 7.7e-19, Sum P(2) = 7.7e-19
Identities = 51/187 (27%), Positives = 91/187 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP+T ++++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K T+ D+ +F +G I
Sbjct: 105 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 164
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL G P+ +S+G FV F A+ A++ ++ EG S P+
Sbjct: 165 RIL-------------RG-PD--GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 208
Query: 202 TVKFANS 208
VKFA++
Sbjct: 209 VVKFADT 215
Score = 148 (57.2 bits), Expect = 7.7e-19, Sum P(2) = 7.7e-19
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L E D L Q+F PFG V + KV D QT K FGFV N A AIQS+
Sbjct: 431 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 490
Query: 334 NGYALGDRLLQVSFKTHK 351
NG+ +G + L+V K K
Sbjct: 491 NGFQIGMKRLKVQLKRSK 508
Score = 129 (50.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 412 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 471
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 472 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 511
Score = 104 (41.7 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 100 VSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159
+ A E + ANL++ LP+ +DL +F P+G ++++++ DK +
Sbjct: 416 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-------- 467
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 468 -------LSKCFGFVSYDNPVSAQAAIQSMNG 492
Score = 94 (38.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 35/108 (32%), Positives = 56/108 (51%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ +++DL LF YG + +L D+ S+N P
Sbjct: 37 QPDLDAIK---MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR--SQN--------P- 82
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 83 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-VLP-GMHHPIQMKPADS 126
Score = 80 (33.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 18/79 (22%), Positives = 40/79 (50%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + T+ +++ +FSS G++E C+++R
Sbjct: 115 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GL 173
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G FV + A+ AI
Sbjct: 174 SRGCAFVTFTTRAMAQTAI 192
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 174 (66.3 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 43/169 (25%), Positives = 85/169 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY ++N+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + I++ +++ P N+++ L + + L + F +G I++ ++
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD S +G GFV F H A++A++ +NG +
Sbjct: 131 VCDDHGS-----------------RGFGFVHFETHEAAQNAIRTMNGML 162
Score = 172 (65.6 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 56/188 (29%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + + + LQ LFS G++ S K++RD + S G+GFVN+ + EDA++A+
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDS-GHSRGFGFVNFEKHEDAQKAVT 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
++NG ++ + + V A+ + ++R N L + Q + L R G + + L
Sbjct: 250 DMNGKEVSGRLLYVGRAQ---KRVERQN----ELKRRFEQMKQDRLTRYQGVNLYVKNLD 302
Query: 147 DKMASENVRS-FVS-GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R F G ++ SKG GFV F+ EA A+ E+NG I +
Sbjct: 303 DSIDDEKLRKEFAPYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV--GT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 167 (63.8 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 46/172 (26%), Positives = 89/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FS+ G + SCK++ D ++ G+GFV++ E A+ AI
Sbjct: 100 NVFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR--GFGFVHFETHEAAQNAIRT 157
Query: 88 LNGLKLQNKSIKVSYARPSSE--------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + + E A++ N+YV L + + L++LF +G I
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKI 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG S+G GFV F +H +A+ A+ ++NG
Sbjct: 218 LSVKVMRDD----------SGH------SRGFGFVNFEKHEDAQKAVTDMNG 253
Score = 123 (48.4 bits), Expect = 7.8e-19, Sum P(2) = 7.8e-19
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I+V NL + ++ L LF FG + +VKV+RD + +GFGFV +++A A+ +
Sbjct: 193 IYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHS-RGFGFVNFEKHEDAQKAVTDM 251
Query: 334 NGYALGDRLLQV 345
NG + RLL V
Sbjct: 252 NGKEVSGRLLYV 263
Score = 118 (46.6 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F P+G + + KV+ + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGTKPLYVALAQRK 371
Score = 114 (45.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L+ F FG + + KVV D + +GFGFV ++ A AI+++
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQNAIRTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRR 177
Score = 72 (30.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G I++ R+ C +A+ S G
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDVATRR--------------SLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YINFQQPADAERALDTMNFEVIKG--QPIRIMWS 87
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 183 (69.5 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 51/186 (27%), Positives = 88/186 (47%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
N N+ + + + + + + FS G + SCK+ D S GYGFV++ A+ AI
Sbjct: 144 NGNIFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDE-GNSKGYGFVHFETEHSAQTAI 202
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKR--------ANLYVSGLPKHMTQEDLENLFRPYG 137
++NG+ L +K + V +P ++ +K N++V +H+ QE L +F +G
Sbjct: 203 EKVNGMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFG 262
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGA 197
I ++ ++ D G P KG GFV F A A+++LN +I EG
Sbjct: 263 EITSAVVMTD----------AQGKP------KGFGFVAFADQDAAGQAVEKLNDSILEGT 306
Query: 198 SEPITV 203
++V
Sbjct: 307 DCKLSV 312
Score = 162 (62.1 bits), Expect = 2.6e-16, Sum P(2) = 2.6e-16
Identities = 44/178 (24%), Positives = 91/178 (51%)
Query: 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYR 77
Y + ++L + + +++ L FS G V S ++ RD T+ SLGY +VN+ +
Sbjct: 48 YPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQ 107
Query: 78 TEDAERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
DAERA+ +N + + +++ +++ P++ N+++ L + + + + + F
Sbjct: 108 PADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSL 167
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+G I++ C K+A+++ G SKG GFV F A+ A++++NG +
Sbjct: 168 FGNILS----C-KVATDD-----EGN------SKGYGFVHFETEHSAQTAIEKVNGML 209
Score = 120 (47.3 bits), Expect = 0.00037, P = 0.00037
Identities = 49/189 (25%), Positives = 90/189 (47%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + + QE+L +FS GE+ S ++ D + G+GFV + + A +A+
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTD-AQGKPKGFGFVAFADQDAAGQAVE 296
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
+LN L+ K+S R ++ + A L + + QE ++ R G + + +
Sbjct: 297 KLNDSILEGTDCKLSVCRAQKKSERSAEL--KRKYEALKQERVQ---RYQGVNLYVKNIE 351
Query: 147 DKMASENVRSFVS--GTPEIPQI-------SKGIGFVRFNQHIEAEHAMQELNGTIPEGA 197
+ + + +R S GT ++ SKG GFV F + EA A+ ++N + GA
Sbjct: 352 EDLNDDGLRDHFSSFGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMI-GA 410
Query: 198 SEPITVKFA 206
+P+ V A
Sbjct: 411 -KPLYVALA 418
Score = 114 (45.2 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 25/78 (32%), Positives = 41/78 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V N+ + D+ L F FG + + KV+ D + + KGFGFVC +EA A+ +
Sbjct: 345 LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDM 403
Query: 334 NGYALGDRLLQVSFKTHK 351
N +G + L V+ K
Sbjct: 404 NSKMIGAKPLYVALAQRK 421
Score = 94 (38.1 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV N + L +F FG + + V+ D Q K KGFGFV + D A A++ L
Sbjct: 240 VFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQG-KPKGFGFVAFADQDAAGQAVEKL 298
Query: 334 N 334
N
Sbjct: 299 N 299
Score = 55 (24.4 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 20/92 (21%), Positives = 38/92 (41%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
P + A+LY+ L +++ L F G +++ R+ D +
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTS-------------- 94
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
++S G +V F Q +AE A+ +N + G
Sbjct: 95 -RLSLGYAYVNFQQPADAERALDTMNFEVIHG 125
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 176 (67.0 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 44/169 (26%), Positives = 83/169 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY ++N+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N L+ + I++ +++ P N+++ L + + L + F +G I++ ++
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
CD+ S +G GFV F H A+ A+ +NG +
Sbjct: 131 ACDEHGS-----------------RGFGFVHFETHEAAQQAINTMNGML 162
Score = 169 (64.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 46/172 (26%), Positives = 90/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FS+ G + SCK+ D+ ++ G+GFV++ E A++AI
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINT 157
Query: 88 LNGLKLQNKSIKVSYARPSSE--------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + + E A++ N+YV LP + ++ L++LF +G +
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D S + R F GFV F +H EA+ A+ +NG
Sbjct: 218 LSVKVMRDN--SGHSRCF--------------GFVNFEKHEEAQKAVVHMNG 253
Score = 136 (52.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 35/129 (27%), Positives = 70/129 (54%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V +P + ++ LQ LFS G++ S K++RD + S +GFVN+ + E+A++A++
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVV 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
+NG ++ + + YA + + ++R N L + Q + L R G + + L
Sbjct: 250 HMNGKEVSGRLL---YAGRAQKRVERQN----ELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 147 DKMASENVR 155
D + + +R
Sbjct: 303 DSIDDDKLR 311
Score = 110 (43.8 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IF+ NL ++ L+ F FG + + KV D + +GFGFV ++ A AI ++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRR 177
Score = 109 (43.4 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTY-KCKGFGFVCMTNYDEAVFAIQS 332
I+V NL + ++ L LF FG + +VKV+RD + +C FGFV ++EA A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC--FGFVNFEKHEEAQKAVVH 250
Query: 333 LNGYALGDRLL 343
+NG + RLL
Sbjct: 251 MNGKEVSGRLL 261
Score = 70 (29.7 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G I++ R+ C +A+ S G
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDVATRR--------------SLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YINFQQPADAERALDTMNFEMLKG--QPIRIMWS 87
Score = 49 (22.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVK 302
++V NL +D+ L + F P+G + + K
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAK 324
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 181 (68.8 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 54/194 (27%), Positives = 98/194 (50%)
Query: 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT 78
+ + E++ L V +P+ M++ +L LF V+ +I+DK T S G F+
Sbjct: 10 EKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSR 69
Query: 79 EDAERAIIELNGLKL---QNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
E+A++ + + K N ++V YA E ++ L+V LPK++++ ++++LF
Sbjct: 70 EEADKLVNACHNKKTLPGANSLLQVKYADGELERLEH-KLFVGMLPKNVSEAEVQSLFSK 128
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIP- 194
YGTI +IL G Q SKG F+++ +A AM+ +NG
Sbjct: 129 YGTIKDLQIL-------------RGAQ---QTSKGCAFLKYETKEQAVSAMESINGKHKM 172
Query: 195 EGASEPITVKFANS 208
EG++ P+ VK+A++
Sbjct: 173 EGSTVPLVVKWADT 186
Score = 127 (49.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 33/99 (33%), Positives = 49/99 (49%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S Q++ + +NL + +P+ +EL F S G V S K+ DK T S +GFV+Y
Sbjct: 339 SVVQTE-GPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSY 397
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRAN 114
A+ AI +NG L K +KV R S+ +N
Sbjct: 398 DSQAAAQNAIDMMNGRHLGGKKLKVQLKRDSNNGQPSSN 436
Score = 109 (43.4 bits), Expect = 9.3e-19, Sum P(2) = 9.3e-19
Identities = 29/75 (38%), Positives = 37/75 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+YN+ E D L F FG V + KV D T K FGFV + A AI +
Sbjct: 351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410
Query: 334 NGYALGDRLLQVSFK 348
NG LG + L+V K
Sbjct: 411 NGRHLGGKKLKVQLK 425
Score = 71 (30.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKM 149
R +E + L+V +PKHM++ L LF+ + + I+ DK+
Sbjct: 9 REKNEEEESVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKI 54
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 176 (67.0 bits), Expect = 9.4e-19, Sum P(2) = 9.4e-19
Identities = 44/169 (26%), Positives = 83/169 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY ++N+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N L+ + I++ +++ P N+++ L + + L + F +G I++ ++
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
CD+ S +G GFV F H A+ A+ +NG +
Sbjct: 131 ACDEHGS-----------------RGFGFVHFETHEAAQQAINTMNGML 162
Score = 175 (66.7 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 54/188 (28%), Positives = 97/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V +P + ++ LQ LFS G++ S K++RD + S +GFVN+ + E+A++A++
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVV 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
+NG ++ + + YA + + ++R N L + Q + L R G + + L
Sbjct: 250 HMNGKEVSGRLL---YAGRAQKRVERQN----ELKRRFEQMKQDRLRRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + + +R S G ++ SKG GFV F+ EA A+ E+NG I +
Sbjct: 303 DSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV--GT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 169 (64.5 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
Identities = 46/172 (26%), Positives = 90/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FS+ G + SCK+ D+ ++ G+GFV++ E A++AI
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR--GFGFVHFETHEAAQQAINT 157
Query: 88 LNGLKLQNKSIKVSYARPSSE--------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + + E A++ N+YV LP + ++ L++LF +G +
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKM 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D S + R F GFV F +H EA+ A+ +NG
Sbjct: 218 LSVKVMRDN--SGHSRCF--------------GFVNFEKHEEAQKAVVHMNG 253
Score = 120 (47.3 bits), Expect = 9.4e-19, Sum P(2) = 9.4e-19
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D+ L + F P+G + + KV+ + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 354 NGRIVGTKPLYVALAQRK 371
Score = 110 (43.8 bits), Expect = 5.5e-06, Sum P(2) = 5.5e-06
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IF+ NL ++ L+ F FG + + KV D + +GFGFV ++ A AI ++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDE--HGSRGFGFVHFETHEAAQQAINTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRR 177
Score = 109 (43.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTY-KCKGFGFVCMTNYDEAVFAIQS 332
I+V NL + ++ L LF FG + +VKV+RD + +C FGFV ++EA A+
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRC--FGFVNFEKHEEAQKAVVH 250
Query: 333 LNGYALGDRLL 343
+NG + RLL
Sbjct: 251 MNGKEVSGRLL 261
Score = 70 (29.7 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G I++ R+ C +A+ S G
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDVATRR--------------SLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YINFQQPADAERALDTMNFEMLKG--QPIRIMWS 87
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 185 (70.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 60/188 (31%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD + +S G+GFV+Y + EDA +A+
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRD-CSGKSKGFGFVSYEKHEDANKAVE 178
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ KSI V A+ E ++A L + Q E + R G + + L
Sbjct: 179 EMNGKEMSGKSIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 231
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 232 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 289
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 290 KPLYVALA 297
Score = 171 (65.3 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 49/179 (27%), Positives = 90/179 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A +AI +
Sbjct: 29 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAANKAIEK 86
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E+L LF +G
Sbjct: 87 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKT 146
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
++ +++ D SG SKG GFV + +H +A A++E+NG G S
Sbjct: 147 LSVKVMRD----------CSGK------SKGFGFVSYEKHEDANKAVEEMNGKEMSGKS 189
Score = 125 (49.1 bits), Expect = 9.8e-19, Sum P(2) = 9.8e-19
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 225 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 282
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 283 NGRIVGSKPLYVALAQRK 300
Score = 117 (46.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RD K KGFGFV +++A A++ +
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSG-KSKGFGFVSYEKHEDANKAVEEM 180
Query: 334 NGYALGDRLLQV 345
NG + + + V
Sbjct: 181 NGKEMSGKSIFV 192
Score = 75 (31.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 16/68 (23%), Positives = 38/68 (55%)
Query: 93 LQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMA 150
++ K I++ +++ PS N+++ L K + + L + F +G I++ +++CD+
Sbjct: 6 IKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 65
Query: 151 SENVRSFV 158
S+ +FV
Sbjct: 66 SKGY-AFV 72
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 177 (67.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 42/140 (30%), Positives = 74/140 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FSS G + SCK+ D T +S GYGFV + + E A+ AI +
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
Query: 88 LNGLKLQNKSIKVSY-------ARPSSEAIKR-ANLYVSGLPKHMTQEDLENLFRPYGTI 139
LNG+ + +K + V + AR + R N+YV LPK + +++L F +G I
Sbjct: 196 LNGMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI 255
Query: 140 ITSRILCDKMASENVRSFVS 159
++ ++ D+ + FV+
Sbjct: 256 SSAVVMRDQSGNSRCFGFVN 275
Score = 177 (67.4 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 50/176 (28%), Positives = 87/176 (49%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
+D NS+L + +T+ L LF V V S ++ RD+ +SLGY ++N+
Sbjct: 42 ADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNR-RSLGYAYINFSNPN 100
Query: 80 DAERAIIELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYG 137
DA RA+ LN L ++ I++ + PS+ + N+++ L + + L F +G
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFG 160
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
TI++ ++ D V+G SKG GFV+F + A+ A+ +LNG +
Sbjct: 161 TILSCKVAMD----------VTGR------SKGYGFVQFEKEESAQAAIDKLNGML 200
Score = 153 (58.9 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 47/174 (27%), Positives = 85/174 (48%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V +P+ + ++EL+ F G + S ++RD++ S +GFVN+ TE A A+
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAASAVE 287
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
++NG+ L + + V A+ SE + L + QE + + G + + L
Sbjct: 288 KMNGISLGDDVLYVGRAQKKSEREEE-------LRRKFEQERINRFEKSQGANLYLKNLD 340
Query: 147 DKMASENVRSFVSGTPEI--------PQ-ISKGIGFVRFNQHIEAEHAMQELNG 191
D + E ++ S + PQ +S+G GFV ++ EA A+ E+NG
Sbjct: 341 DSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNG 394
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 29/91 (31%), Positives = 52/91 (57%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q +NL + + ++ E+L+ +FS G V S K++ + S G+GFV Y E+A RA
Sbjct: 330 QGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRA 388
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKRANL 115
+ E+NG + K + ++ A+ + +RA+L
Sbjct: 389 LSEMNGKMIGRKPLYIALAQRKED--RRAHL 417
Score = 119 (46.9 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L ++F +G V + KV+ +PQ +GFGFV +N +EA+ A+ +
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMS-RGFGFVAYSNPEEALRALSEM 392
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L ++ K
Sbjct: 393 NGKMIGRKPLYIALAQRK 410
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00096
Identities = 31/91 (34%), Positives = 44/91 (48%)
Query: 251 PLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTY 310
P+ L N P L G G IF+ NL ++ L++ F FG + + KV D T
Sbjct: 118 PIRIMLSNRD--PSTRLSGKG-NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TG 173
Query: 311 KCKGFGFVCMTNYDEAVFAIQSLNGYALGDR 341
+ KG+GFV + A AI LNG + D+
Sbjct: 174 RSKGYGFVQFEKEESAQAAIDKLNGMLMNDK 204
Score = 114 (45.2 bits), Expect = 3.8e-18, Sum P(2) = 3.8e-18
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL E ++ L + FG FG + + V+RD Q+ + FGFV + A A++ +
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 334 NGYALGDRLLQV 345
NG +LGD +L V
Sbjct: 290 NGISLGDDVLYV 301
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 174 (66.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 46/172 (26%), Positives = 91/172 (52%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FS+ G + SCK++ D ++ G+GFV++ E A++AI
Sbjct: 100 NIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSR--GFGFVHFETHEAAQQAITT 157
Query: 88 LNGLKLQNKSIKVSYARPSSE--------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + + E A++ N+YV L + ++ L++LF +G +
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKM 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG S+G GFV F +H EA+ A+ ++NG
Sbjct: 218 LSVKVMRDD----------SGH------SRGFGFVNFQKHEEAQKAVMDMNG 253
Score = 172 (65.6 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 43/169 (25%), Positives = 83/169 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY ++N+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + I++ +++ P N+++ L + + L + F +G I++ ++
Sbjct: 71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD S +G GFV F H A+ A+ +NG +
Sbjct: 131 VCDDHGS-----------------RGFGFVHFETHEAAQQAITTMNGML 162
Score = 171 (65.3 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 55/188 (29%), Positives = 98/188 (52%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + + ++ LQ LFS G++ S K++RD + S G+GFVN+ + E+A++A++
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDS-GHSRGFGFVNFQKHEEAQKAVM 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
++NG ++ + + V A+ + ++R S L + Q + L R G + + L
Sbjct: 250 DMNGKEVSGRLLYVGRAQ---KRVERQ----SELKRRFEQLKQDRLTRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G ++ SKG GFV F+ EA A+ E+NG I +
Sbjct: 303 DSIDDEKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIL--GT 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 122 (48.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F P+G + + KV+ + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG LG + L V+ K
Sbjct: 354 NGRILGTKPLYVALAQRK 371
Score = 122 (48.0 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 28/72 (38%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I+V NL + ++ L LF FG + +VKV+RD + +GFGFV ++EA A+ +
Sbjct: 193 IYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHS-RGFGFVNFQKHEEAQKAVMDM 251
Query: 334 NGYALGDRLLQV 345
NG + RLL V
Sbjct: 252 NGKEVSGRLLYV 263
Score = 113 (44.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IF+ NL ++ L+ F FG + + KVV D + +GFGFV ++ A AI ++
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDD--HGSRGFGFVHFETHEAAQQAITTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRR 177
Score = 72 (30.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G I++ R+ C +A+ S G
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDVATRR--------------SLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G +PI + ++
Sbjct: 56 YINFQQPADAERALDTMNFEVIKG--QPIRIMWS 87
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 201 (75.8 bits), Expect = 6.0e-14, P = 6.0e-14
Identities = 52/185 (28%), Positives = 92/185 (49%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G + ++++D T +S GYGFV++
Sbjct: 85 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+ DAE AI ++ G L + I+ ++A A K + Y S K ++ +D+ N P
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDDVVNQSSP 200
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRFN H A HA+ +NG
Sbjct: 201 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 260
Query: 192 TIPEG 196
T EG
Sbjct: 261 TTIEG 265
Score = 200 (75.5 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 56/173 (32%), Positives = 91/173 (52%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+E L V + + +T+ + LFS +G ++CK+I D TA + Y FV +Y A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAA 60
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMTQEDLENLFRPYGT 138
A+ +NG K+ K +KV++A PSS+ +N ++V L +T ED++ F P+G
Sbjct: 61 SALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
I +R++ D MA+ SKG GFV F +AE+A+Q++ G
Sbjct: 121 ISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQQMGG 158
Score = 149 (57.5 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAP 178
Score = 80 (33.2 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ ++ Q F PFG + ++V D KG+ FV +++ A AI S+NG + +++
Sbjct: 216 EQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVK 269
Query: 345 VSFKTHKP--LPPV 356
+ P + PV
Sbjct: 270 CYWGKETPDMISPV 283
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 179 (68.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 48/172 (27%), Positives = 88/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E A RAI
Sbjct: 100 NIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSK--GYGFVHFETQEAANRAIET 157
Query: 88 LNGLKLQNKSIKVSY--------ARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + A ++A++ N+Y+ + + E L+N+F +G
Sbjct: 158 MNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +C M E RS +G GFV F H +A A+ E+NG
Sbjct: 218 LS---VC-VMTDERGRS------------RGFGFVNFVNHGDARRAVTEMNG 253
Score = 169 (64.5 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 44/169 (26%), Positives = 86/169 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G++ S ++ RD T +SLGY ++N+ + DAE A+
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + I++ +++ P N+++ + + + + L + F +G I++ ++
Sbjct: 71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G SKG GFV F A A++ +NG +
Sbjct: 131 VCD----EN------G-------SKGYGFVHFETQEAANRAIETMNGML 162
Score = 152 (58.6 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 52/188 (27%), Positives = 93/188 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E+L+++F+ G+ S ++ D+ +S G+GFVN+ DA RA+
Sbjct: 191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDER-GRSRGFGFVNFVNHGDARRAVT 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L + V Y + + ++R L + Q E + R G + + L
Sbjct: 250 EMNGKELNGR---VLYVGRAQKRLERQG----ELKRKFEQIKQERIQRYQGVNLYVKNLD 302
Query: 147 DKMASENVRS-FVS-GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R F GT ++ S+G GFV F+ EA A+ E+NG I ++
Sbjct: 303 DSIDDEKLRKEFAPYGTITSAKVMTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIV--ST 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 114 (45.2 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F P+G + + KV+ D +GFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVSTKPLYVALAQRK 371
Score = 110 (43.8 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IF+ N+ ++ L+ F FG + + KVV D KG+GFV + A AI+++
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAANRAIETM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ K
Sbjct: 159 NGMLLNDRKVFVGHFKSRK 177
Score = 97 (39.2 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + + L +F FG +V V+ D + + +GFGFV N+ +A A+ +
Sbjct: 193 VYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERG-RSRGFGFVNFVNHGDARRAVTEM 251
Query: 334 NGYALGDRLLQV 345
NG L R+L V
Sbjct: 252 NGKELNGRVLYV 263
Score = 62 (26.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/94 (26%), Positives = 42/94 (44%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G I++ R+ D I + S G
Sbjct: 11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDV---------------ITRRSLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G PI + ++
Sbjct: 56 YINFQQPADAECALDTMNYEVIKG--RPIRIMWS 87
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 179 (68.1 bits), Expect = 9.2e-11, P = 9.2e-11
Identities = 59/188 (31%), Positives = 95/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD + +S G+GFV+Y + EDA +A+
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPS-GKSKGFGFVSYEKHEDANKAVE 289
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ K I V A+ E ++A L + Q E + R G + + L
Sbjct: 290 EMNGKEISGKVIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 342
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 343 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 400
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 401 KPLYVALA 408
Score = 170 (64.9 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 47/172 (27%), Positives = 89/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A++AI +
Sbjct: 140 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 197
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E L+ LF +G
Sbjct: 198 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 257
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG SKG GFV + +H +A A++E+NG
Sbjct: 258 LSVKVMRDP----------SGK------SKGFGFVSYEKHEDANKAVEEMNG 293
Score = 131 (51.2 bits), Expect = 6.3e-12, Sum P(3) = 6.3e-12
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RDP K KGFGFV +++A A++ +
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSG-KSKGFGFVSYEKHEDANKAVEEM 291
Query: 334 NGYALGDRLLQV 345
NG + +++ V
Sbjct: 292 NGKEISGKVIFV 303
Score = 125 (49.1 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 336 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 393
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 394 NGRIVGSKPLYVALAQRK 411
Score = 92 (37.4 bits), Expect = 6.3e-12, Sum P(3) = 6.3e-12
Identities = 28/120 (23%), Positives = 62/120 (51%)
Query: 42 ELQHLFSSVGEVE-SCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100
EL+ L + E + S KL + + ++ + + + AERA+ +N ++ K I++
Sbjct: 65 ELRRLVPTAFEKQGSSKLEKAEVLQMTVDHLKMLHATGGTAERALDTMNFDVIKGKPIRI 124
Query: 101 SYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFV 158
+++ PS N+++ L K + + L + F +G I++ +++CD+ S+ +FV
Sbjct: 125 MWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGY-AFV 183
Score = 53 (23.7 bits), Expect = 6.3e-12, Sum P(3) = 6.3e-12
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTI 193
SKG FV F A+ A++++NG +
Sbjct: 177 SKGYAFVHFETQEAADKAIEKMNGML 202
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 178 (67.7 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 59/188 (31%), Positives = 94/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + + E L+ LFS G+ S K++RD +S G+GFV+Y + EDA +A+
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVE 151
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG ++ K I V A+ E ++A L + Q E + R G + + L
Sbjct: 152 EMNGKEISGKIIFVGRAQKKVE--RQAEL-----KRKFEQLKQERISRYQGVNLYIKNLD 204
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S G+ ++ SKG GFV F+ EA A+ E+NG I S
Sbjct: 205 DTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV--GS 262
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 263 KPLYVALA 270
Score = 167 (63.8 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 46/172 (26%), Positives = 89/172 (51%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GY FV++ E A++AI +
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSK--GYAFVHFETQEAADKAIEK 59
Query: 88 LNGLKLQN--------KSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L + KS K A ++A + N+Y+ + + E L+ LF +G
Sbjct: 60 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKT 119
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D +G SKG GFV + +H +A A++E+NG
Sbjct: 120 LSVKVMRDP----------NGK------SKGFGFVSYEKHEDANKAVEEMNG 155
Score = 132 (51.5 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N E +D L +LF FG +VKV+RDP K KGFGFV +++A A++ +
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNG-KSKGFGFVSYEKHEDANKAVEEM 153
Query: 334 NGYALGDRLLQV 345
NG + +++ V
Sbjct: 154 NGKEISGKIIFV 165
Score = 125 (49.1 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 26/78 (33%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL +D L + F PFG++ + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 198 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEM 255
Query: 334 NGYALGDRLLQVSFKTHK 351
NG +G + L V+ K
Sbjct: 256 NGRIVGSKPLYVALAQRK 273
Score = 115 (45.5 bits), Expect = 0.00098, P = 0.00098
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q NL + + T+ E+L+ FS G + S K++ + +S G+GFV + E+A +A
Sbjct: 194 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKA 251
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKR-ANLY---VSGLPKHMTQEDLENLFRP 135
+ E+NG + +K + V+ A+ E N Y V+G+ + + + N F+P
Sbjct: 252 VTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQRVAGM-RALPANAILNQFQP 305
Score = 53 (23.7 bits), Expect = 7.8e-07, Sum P(2) = 7.8e-07
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTI 193
SKG FV F A+ A++++NG +
Sbjct: 39 SKGYAFVHFETQEAADKAIEKMNGML 64
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 148 (57.2 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 35/78 (44%), Positives = 45/78 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+Y+L E D L Q+F PFG V + KV D QT K FGFV N A AIQS+
Sbjct: 430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489
Query: 334 NGYALGDRLLQVSFKTHK 351
NG+ +G + L+V K K
Sbjct: 490 NGFQIGMKRLKVQLKRSK 507
Score = 143 (55.4 bits), Expect = 4.4e-18, Sum P(2) = 4.4e-18
Identities = 49/187 (26%), Positives = 89/187 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT--AQSLGYGFVNYYRTEDAERAII 86
+ V VP+T ++++L+ LF G V ++RD++ QS G FV +Y + A A
Sbjct: 45 MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 104
Query: 87 ELNGLKL---QNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITS 142
L+ +K+ + I++ A + A++ L++ + K T+ D+ +F +G I
Sbjct: 105 ALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEEC 164
Query: 143 RILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELN-GTIPEGASEPI 201
RIL P+ +S+G V F A+ A++ ++ EG S P+
Sbjct: 165 RILWG--------------PD--GLSRGCALVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 208
Query: 202 TVKFANS 208
VKFA++
Sbjct: 209 VVKFADT 215
Score = 129 (50.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 411 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 470
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 471 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 510
Score = 104 (41.7 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 100 VSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS 159
+ A E + ANL++ LP+ +DL +F P+G ++++++ DK +
Sbjct: 415 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTN-------- 466
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 467 -------LSKCFGFVSYDNPVSAQAAIQSMNG 491
Score = 94 (38.1 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 35/108 (32%), Positives = 56/108 (51%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+P +AIK ++V +P+ +++DL LF YG + +L D+ S+N P
Sbjct: 37 QPDLDAIK---MFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDR--SQN--------P- 82
Query: 164 IPQISKGIGFVRFNQH---IEAEHAMQELNGTIPEGASEPITVKFANS 208
PQ SKG FV F +EA++A+ + +P G PI +K A+S
Sbjct: 83 -PQ-SKGCCFVTFYTRKAALEAQNALHNMK-VLP-GMHHPIQMKPADS 126
Score = 66 (28.3 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 16/79 (20%), Positives = 38/79 (48%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ Q + + + ++ L + + + T+ +++ +FSS G++E C+++
Sbjct: 115 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILWGPD-GL 173
Query: 67 SLGYGFVNYYRTEDAERAI 85
S G V + A+ AI
Sbjct: 174 SRGCALVTFTTRAMAQTAI 192
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 171 (65.3 bits), Expect = 6.5e-18, Sum P(2) = 6.5e-18
Identities = 43/169 (25%), Positives = 84/169 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY ++N+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + I++ +++ P N+++ L + + + L + F +G I++ ++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD+ S +G GFV F A A+Q +NG +
Sbjct: 131 VCDEHGS-----------------RGYGFVHFETQEAANRAIQTMNGML 162
Score = 171 (65.3 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 60/207 (28%), Positives = 102/207 (49%)
Query: 8 YNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQS 67
+ + + Y + V E + I N+ + M + L+ +FS+ G S K++ D T +S
Sbjct: 173 FKSRRERELEYGAKVMEFTNVYIKNF-GEDMDDKRLREIFSAFGNTLSVKVMMDDT-GRS 230
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQE 127
G+GFVNY E+A++A+ E+NG ++ + I V A+ + I+R L + Q
Sbjct: 231 RGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ---KRIERQG----ELKRKFEQI 283
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQH 179
E + R G + + L D + + +R S GT ++ SKG GFV F+
Sbjct: 284 KQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSP 343
Query: 180 IEAEHAMQELNGTIPEGASEPITVKFA 206
EA A+ E+NG I +++P+ V A
Sbjct: 344 EEATKAVTEMNGRIV--STKPLYVALA 368
Score = 169 (64.5 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 44/172 (25%), Positives = 86/172 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E A RAI
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETQEAANRAIQT 157
Query: 88 LNGLKLQNKSIKVSYARPSSE--------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + + E ++ N+Y+ + M + L +F +G
Sbjct: 158 MNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D +G S+G GFV + H EA+ A+ E+NG
Sbjct: 218 LSVKVMMDD----------TGR------SRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 118 (46.6 bits), Expect = 6.5e-18, Sum P(2) = 6.5e-18
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L ++F FG +VKV+ D T + +GFGFV N++EA A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 334 NGYALGDRLLQV 345
NG + R++ V
Sbjct: 252 NGKEVNGRMIYV 263
Score = 111 (44.1 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D+ L + F P+G + + KV+ + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVSTKPLYVALAQRK 371
Score = 110 (43.8 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L+ F FG + + KVV D + +G+GFV + A AIQ++
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETQEAANRAIQTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRR 177
Score = 69 (29.3 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G I++ R+ C +A+ S G
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRV-CRDIATRR--------------SLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G PI + ++
Sbjct: 56 YINFQQPADAERALDTMNFEVIKG--RPIRIMWS 87
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 193 (73.0 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 54/173 (31%), Positives = 90/173 (52%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+EQ L V + + +T+ + LF +G +SCK+I D TA + Y FV ++ A
Sbjct: 4 DEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVD--TAGNDPYCFVEFFEHRHAA 61
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMTQEDLENLFRPYGT 138
++ +NG K+ K +KV++A PSS+ +N ++V L +T +D+ F P+G
Sbjct: 62 ASLAAMNGRKIMGKEVKVNWATSPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGR 121
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
I +R++ D MA+ SKG GFV F +AE+A+Q++ G
Sbjct: 122 ISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQQMGG 159
Score = 193 (73.0 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 49/185 (26%), Positives = 92/185 (49%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T ++++ F+ G + ++++D T +S GYGFV++
Sbjct: 86 SSQKKDTSNHFHVFVGDLSPE-ITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSF 144
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+ DAE AI ++ G L + I+ ++A A K Y + KH++ +++ N P
Sbjct: 145 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKAT--YETNT-KHLSFDEVVNQSSP 201
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I ++ KG FVRFN H A HA+ +NG
Sbjct: 202 SNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVFPDKGYSFVRFNSHESAAHAIVSVNG 261
Query: 192 TIPEG 196
T EG
Sbjct: 262 TSLEG 266
Score = 150 (57.9 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 158 GGQWLGGRQIRTNWATRKPPAP 179
Score = 83 (34.3 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
+ ++ Q F PFG + V+V D KG+ FV +++ A AI S+NG +L +++
Sbjct: 217 EQLMRQTFSPFGQIMEVRVFPD------KGYSFVRFNSHESAAHAIVSVNGTSLEGHIVK 270
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 200 (75.5 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 51/185 (27%), Positives = 93/185 (50%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ T ++++ F+ G++ ++++D T +S GYGF+++
Sbjct: 87 SSQKKDTSNHFHVFVGDLSPEIST-DDVRAAFAPFGKISDARVVKDLATGKSKGYGFISF 145
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
DAE AI ++NG L + I+ ++A A K N S KH++ E++ N P
Sbjct: 146 INKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAPKSNNEGASS--KHLSYEEVLNQSSP 203
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + ++ + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 204 SNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFDSHEGAAHAIVSVNG 263
Query: 192 TIPEG 196
T EG
Sbjct: 264 TCIEG 268
Score = 190 (71.9 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 53/172 (30%), Positives = 88/172 (51%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
+Q L V + + +T+ + +FS +G +SCK+I D TT Y FV +Y A
Sbjct: 6 DQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILD-TTGND-PYCFVEFYENRHAAA 63
Query: 84 AIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMTQEDLENLFRPYGTI 139
A+ +NG K+ K +KV++A PSS+ +N ++V L ++ +D+ F P+G I
Sbjct: 64 ALAAMNGRKILGKDMKVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVRAAFAPFGKI 123
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+R+ V+ +G SKG GF+ F +AE A+Q++NG
Sbjct: 124 SDARV---------VKDLATGK------SKGYGFISFINKWDAESAIQQMNG 160
Score = 157 (60.3 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + + F PFG + + +VV+D T K KG+GF+ N +A AIQ +
Sbjct: 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
NG LG R ++ ++ T KP P
Sbjct: 159 NGQWLGGRQIRTNWATRKPSAP 180
Score = 82 (33.9 bits), Expect = 9.8e-18, Sum P(2) = 9.8e-18
Identities = 20/66 (30%), Positives = 34/66 (51%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
S ++ +A D ++ Q F PFG + ++V P+ KG+ FV +++ A A
Sbjct: 204 SNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFDSHEGAAHA 257
Query: 330 IQSLNG 335
I S+NG
Sbjct: 258 IVSVNG 263
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 195 (73.7 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 55/173 (31%), Positives = 91/173 (52%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+E L V + + +T+ + LFS +G ++CK+I D TA + Y FV ++ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMTQEDLENLFRPYGT 138
A+ +NG K+ K +KV++A PSS+ +N ++V L +T ED++ F P+G
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
I +R++ D MA+ SKG GFV F +AE+A+Q++ G
Sbjct: 121 ISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQQMGG 158
Score = 185 (70.2 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 48/185 (25%), Positives = 92/185 (49%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G + ++++D T +S GYGFV++
Sbjct: 85 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+ DAE AI ++ G L + I+ ++A A K + Y S K ++ +++ + P
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDEVVSQSSP 200
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG F+RF+ H A HA+ +NG
Sbjct: 201 GNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSVNG 260
Query: 192 TIPEG 196
T EG
Sbjct: 261 TTIEG 265
Score = 149 (57.5 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAP 178
Score = 78 (32.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335
+ ++ Q F PFG + ++V D KG+ F+ ++++ A AI S+NG
Sbjct: 216 EQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSVNG 260
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 172 (65.6 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 42/169 (24%), Positives = 84/169 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L + + +T+ L FS G + S ++ RD T +SL Y ++N+ + DAERA+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + I++ +++ P N+++ L + + + L + F +G I++ ++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD+ S +G GFV F H A A+Q +NG +
Sbjct: 131 VCDEHGS-----------------RGYGFVHFETHEAANRAIQTMNGML 162
Score = 171 (65.3 bits), Expect = 9.1e-17, Sum P(2) = 9.1e-17
Identities = 45/172 (26%), Positives = 86/172 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ + L FS+ G + SCK++ D+ ++ GYGFV++ E A RAI
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSR--GYGFVHFETHEAANRAIQT 157
Query: 88 LNGLKLQNKSIKVSYARPSSE--------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + + E ++ N+Y+ + M + L +F +G
Sbjct: 158 MNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG S+G GFV + H EA+ A+ E+NG
Sbjct: 218 LSVKVMMDD----------SGR------SRGFGFVNYGNHEEAQKAVSEMNG 253
Score = 170 (64.9 bits), Expect = 8.3e-10, P = 8.3e-10
Identities = 60/207 (28%), Positives = 104/207 (50%)
Query: 8 YNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQS 67
+ + + Y + V E + I N+ + M + L+ +FS+ G S K++ D + +S
Sbjct: 173 FKSRRERELEYGAKVMEFTNVYIKNF-GEDMDDKRLREIFSAFGNTLSVKVMMDDS-GRS 230
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQE 127
G+GFVNY E+A++A+ E+NG ++ + I V A+ + I+R S L + Q
Sbjct: 231 RGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQ---KRIERQ----SELKRKFEQI 283
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRS-FVS-GTPEIPQI------SKGIGFVRFNQH 179
E + R G + + L D + + +R F+ GT ++ SKG GFV F+
Sbjct: 284 KQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSP 343
Query: 180 IEAEHAMQELNGTIPEGASEPITVKFA 206
EA A+ E+NG I +++P+ V A
Sbjct: 344 EEATKAVTEMNGRIV--STKPLYVALA 368
Score = 114 (45.2 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L ++F FG +VKV+ D + + +GFGFV N++EA A+ +
Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEM 251
Query: 334 NGYALGDRLLQV 345
NG + R++ V
Sbjct: 252 NGKEVNGRMIYV 263
Score = 113 (44.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L+ F FG + + KVV D + +G+GFV ++ A AIQ++
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDE--HGSRGYGFVHFETHEAANRAIQTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRR 177
Score = 107 (42.7 bits), Expect = 6.8e-17, Sum P(2) = 6.8e-17
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D+ L + F P+G + + KV+ + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVSTKPLYVALAQRK 371
Score = 64 (27.6 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LY+ L +T+ L F P G I++ R+ C +A+ S+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRV-CRDIATRRSLSYA-------------- 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G PI + ++
Sbjct: 56 YINFQQPADAERALDTMNFEVIKG--RPIRIMWS 87
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 54/188 (28%), Positives = 95/188 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + M L+ +FS G+ S K++ D T +S G+GFVN+ + E+A++A+
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHT-GRSKGFGFVNFEKHEEAQKAVA 249
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
++NG ++ + + V A+ + ++R S L + Q E + R G + + L
Sbjct: 250 DMNGKEINGRMVYVGRAQ---KRLERQ----SELKRKFEQMKQERVSRYQGVNLYVKNLD 302
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I ++
Sbjct: 303 DGIDDERLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIV--ST 360
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 361 KPLYVALA 368
Score = 166 (63.5 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 45/172 (26%), Positives = 85/172 (49%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FS+ G + SCK++ D+ ++ G+GFV++ E A RAI
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSR--GHGFVHFETQEAATRAIQT 157
Query: 88 LNGLKLQNKSIKVSYARPSSE--------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + + E A++ N+Y+ M L +F +G
Sbjct: 158 MNGMLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D +G SKG GFV F +H EA+ A+ ++NG
Sbjct: 218 LSVKVMMDH----------TGR------SKGFGFVNFEKHEEAQKAVADMNG 253
Score = 165 (63.1 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 44/169 (26%), Positives = 85/169 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD + +SLGY ++N+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + +++ +++ P N+++ L + + L + F +G I++ ++
Sbjct: 71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD EN G S+G GFV F A A+Q +NG +
Sbjct: 131 VCD----EN------G-------SRGHGFVHFETQEAATRAIQTMNGML 162
Score = 122 (48.0 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +DN L ++F FG +VKV+ D T + KGFGFV ++EA A+ +
Sbjct: 193 VYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKGFGFVNFEKHEEAQKAVADM 251
Query: 334 NGYALGDRLLQV 345
NG + R++ V
Sbjct: 252 NGKEINGRMVYV 263
Score = 110 (43.8 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F P+G + + KV+ + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVSTKPLYVALAQRK 371
Score = 110 (43.8 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 28/79 (35%), Positives = 41/79 (51%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L+ F FG + + KVV D +G GFV + A AIQ++
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENG--SRGHGFVHFETQEAATRAIQTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ K
Sbjct: 159 NGMLLNDRKVFVGHFKSRK 177
Score = 72 (30.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G I++ R+ C +AS S G
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDVASRR--------------SLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G P+ + ++
Sbjct: 56 YINFQQPADAERALDTMNFEVIKG--RPVRIMWS 87
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 174 (66.3 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 53/185 (28%), Positives = 91/185 (49%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ LF G++ +++D+ T G F+ Y E A + A+
Sbjct: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S ++ L+V L K +++D+ LF +G I IL
Sbjct: 116 HEQKTLPGMNRPIQVKPADSESRGDRK--LFVGMLNKQQSEDDVRRLFEAFGNIEECTIL 173
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
+ N SKG FV+++ H EA+ A+ L+G T+P GAS + V
Sbjct: 174 --RGPDGN--------------SKGCAFVKYSSHAEAQAAINALHGSQTMP-GASSSLVV 216
Query: 204 KFANS 208
KFA++
Sbjct: 217 KFADT 221
Score = 72 (30.4 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 315 FGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 432 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 468
Score = 70 (29.7 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAV 298
M+P + G C +F+Y+L E D L Q+F PFG V
Sbjct: 397 MIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 435
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 174 (66.3 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 53/185 (28%), Positives = 91/185 (49%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ LF G++ +++D+ T G F+ Y E A + A+
Sbjct: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S ++ L+V L K +++D+ LF +G I IL
Sbjct: 116 HEQKTLPGMNRPIQVKPADSESRGDRK--LFVGMLNKQQSEDDVRRLFEAFGNIEECTIL 173
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
+ N SKG FV+++ H EA+ A+ L+G T+P GAS + V
Sbjct: 174 --RGPDGN--------------SKGCAFVKYSSHAEAQAAINALHGSQTMP-GASSSLVV 216
Query: 204 KFANS 208
KFA++
Sbjct: 217 KFADT 221
Score = 72 (30.4 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 315 FGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 433 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 469
Score = 70 (29.7 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAV 298
M+P + G C +F+Y+L E D L Q+F PFG V
Sbjct: 398 MIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 436
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 171 (65.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 55/185 (29%), Positives = 93/185 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V M ++L+ LFS G ES K+IRD ++ +S G+GFV Y E A++A++
Sbjct: 199 TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVL 257
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII----TS 142
+L+G + K V Y + + I+R ++ L + + L+ RP G I
Sbjct: 258 DLHGKSIDGK---VLYVGRAQKKIER----LAELRRRFERLRLKEKSRPPGVPIYIKNLD 310
Query: 143 RILCDKMASENVRSF--VSGTPEIPQISKGIGF--VRFNQHIEAEHAMQELNGTIPEGAS 198
+ D+ E SF +S + ++ +G GF + F+ EA A+ E+NG I S
Sbjct: 311 ETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVICFSSFEEATKAVDEMNGRIV--GS 368
Query: 199 EPITV 203
+P+ V
Sbjct: 369 KPLQV 373
Score = 160 (61.4 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 49/178 (27%), Positives = 87/178 (48%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ L +LFS+ G + SCK++ D ++ GY +V++ A RAI
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164
Query: 88 LNGLKLQNKSIKVS-YARPSSEAIK-----RA---NLYVSGLPKHMTQEDLENLFRPYGT 138
+NG++L N+ + V + P A + +A N++V M + L+ LF YG
Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGP 224
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ +++ D SG SKG GFVR+ H A+ A+ +L+G +G
Sbjct: 225 TESVKVIRDS----------SGK------SKGFGFVRYETHEAAQKAVLDLHGKSIDG 266
Score = 152 (58.6 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 44/165 (26%), Positives = 77/165 (46%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + +T++ L F G + ++ RD T LGYG+VN+ DAE A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRA--NLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
N + K ++ +++P K N+++ L K + L LF +G+I++ +++C
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVC 139
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
D +N G SKG +V F+ A A+ +NG
Sbjct: 140 D----DN------G-------SKGYAYVHFDSLAAANRAIWHMNG 167
Score = 122 (48.0 bits), Expect = 7.5e-17, Sum P(2) = 7.5e-17
Identities = 26/72 (36%), Positives = 44/72 (61%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV N + +D+ L +LF +G ++VKV+RD + K KGFGFV ++ A A+ L
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRD-SSGKSKGFGFVRYETHEAAQKAVLDL 259
Query: 334 NGYALGDRLLQV 345
+G ++ ++L V
Sbjct: 260 HGKSIDGKVLYV 271
Score = 119 (46.9 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I++ NL +D L + F FG++ KV+ + + KGFG +C ++++EA A+ +
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVM--VEVGQGKGFGVICFSSFEEATKAVDEM 361
Query: 334 NGYALGDRLLQVS 346
NG +G + LQV+
Sbjct: 362 NGRIVGSKPLQVT 374
Score = 93 (37.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 30/88 (34%), Positives = 43/88 (48%)
Query: 263 PPKSLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMT 321
P L SG IF+ NL ++ L+ LF FG++ + KVV D KG+ +V
Sbjct: 96 PDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNG--SKGYAYVHFD 153
Query: 322 NYDEAVFAIQSLNGYALGDRLLQVS-FK 348
+ A AI +NG L +R + V FK
Sbjct: 154 SLAAANRAIWHMNGVRLNNRQVYVGRFK 181
Score = 63 (27.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 26/85 (30%), Positives = 39/85 (45%)
Query: 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGI 171
+A LYV L +T++ L FRP G + +RI C R V+ +P G
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRI-C--------RDPVTRSP------LGY 61
Query: 172 GFVRFNQHIEAEHAMQELNGTIPEG 196
G+V F +AE A+ +N + G
Sbjct: 62 GYVNFRFPADAEWALNTMNFDLING 86
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 173 (66.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 45/172 (26%), Positives = 87/172 (50%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + ++ + L FS+ G++ SCK++ D+ ++ GYGFV++ E A RAI
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSR--GYGFVHFETQEAANRAIQT 157
Query: 88 LNGLKLQNKSIKVSYARPSSE--------AIKRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L ++ + V + + E ++ N+Y+ + M + L+ +F +G
Sbjct: 158 MNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNT 217
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ +++ D SG S+G GFV + H EA+ A+ E+NG
Sbjct: 218 LSVKVMMDN----------SGR------SRGFGFVNYGNHEEAQKAVTEMNG 253
Score = 168 (64.2 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 42/169 (24%), Positives = 83/169 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L + + +T+ L FS G + S ++ RD T +SLGY ++N+ + DAERA+
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N ++ + I++ +++ P N+++ L + + L + F +G I++ ++
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+CD+ S +G GFV F A A+Q +NG +
Sbjct: 131 VCDEYGS-----------------RGYGFVHFETQEAANRAIQTMNGML 162
Score = 168 (64.2 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 58/207 (28%), Positives = 102/207 (49%)
Query: 8 YNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQS 67
+ + + Y + V E + I N+ + M + L+ +FS+ G S K++ D + +S
Sbjct: 173 FKSRRERELEYGAKVMEFTNVYIKNF-GEDMDDKRLKEIFSAFGNTLSVKVMMDNS-GRS 230
Query: 68 LGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQE 127
G+GFVNY E+A++A+ E+NG ++ + + V A+ + I+R L + Q
Sbjct: 231 RGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQ---KRIERQG----ELKRKFEQI 283
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQH 179
E + R G + + L D + + +R S GT ++ SKG GFV F+
Sbjct: 284 KQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSP 343
Query: 180 IEAEHAMQELNGTIPEGASEPITVKFA 206
EA A+ E+NG I +++P+ V A
Sbjct: 344 EEATKAVTEMNGRIV--STKPLYVALA 368
Score = 115 (45.5 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ NL ++ L+ F FG + + KVV D Y +G+GFV + A AIQ++
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDE--YGSRGYGFVHFETQEAANRAIQTM 158
Query: 334 NGYALGDRLLQVS-FKTHK 351
NG L DR + V FK+ +
Sbjct: 159 NGMLLNDRKVFVGHFKSRR 177
Score = 112 (44.5 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L ++F FG +VKV+ D + + +GFGFV N++EA A+ +
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEM 251
Query: 334 NGYALGDRLLQV 345
NG + R++ V
Sbjct: 252 NGKEVNGRMVYV 263
Score = 111 (44.1 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D+ L + F P+G + + KV+ + KGFGFVC ++ +EA A+ +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEM 353
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 354 NGRIVSTKPLYVALAQRK 371
Score = 68 (29.0 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LY+ L +T+ L F P G I++ R+ C +A+ S G
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRV-CRDIATRR--------------SLGYA 55
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
++ F Q +AE A+ +N + +G PI + ++
Sbjct: 56 YINFQQPADAERALDTMNFEVIKG--RPIRIMWS 87
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 167 (63.8 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 55/176 (31%), Positives = 90/176 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + E+L+ LFS G ES K+IRD T +S G+GFV Y E A++A++
Sbjct: 199 TNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRD-ATGKSKGFGFVRYETHEAAQKAVL 257
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
EL+G + K + V A+ + I+R ++ L + + L++ RP G I + L
Sbjct: 258 ELHGKSIDGKVLCVGRAQ---KKIER----LAELRRRFERLKLKDKTRPPGVPIYIKNLD 310
Query: 147 DKMASENVRSFVS--GT-------PEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
+ + E ++ S G+ E+ Q KG G V F+ EA A+ E+NG +
Sbjct: 311 ETINDEKLKEEFSLFGSISRAKVMMEVGQ-GKGFGVVCFSSFEEASKAVNEMNGRV 365
Score = 163 (62.4 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 51/178 (28%), Positives = 87/178 (48%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ L +LFS+ G + SCK++ D ++ GY +V++ A RAI
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164
Query: 88 LNGLKLQNKSIKVS-YARPSSEAIK-----RA---NLYVSGLPKHMTQEDLENLFRPYGT 138
+NG++L N+ + V + P A + RA N++V + E L+ LF YG
Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGP 224
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+E+V+ T + SKG GFVR+ H A+ A+ EL+G +G
Sbjct: 225 ------------TESVKVIRDATGK----SKGFGFVRYETHEAAQKAVLELHGKSIDG 266
Score = 151 (58.2 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 44/165 (26%), Positives = 76/165 (46%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + +T++ L F G + ++ RD T LGYG+VN+ DAE A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRA--NLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
N + K ++ +++P K N+++ L K + L LF +G I++ +++C
Sbjct: 80 NFDLINGKPFRLMWSQPDDHLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
D +N G SKG +V F+ A A+ +NG
Sbjct: 140 D----DN------G-------SKGYAYVHFDSLAAANRAIWHMNG 167
Score = 121 (47.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV N + +D L +LF +G ++VKV+RD T K KGFGFV ++ A A+ L
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDA-TGKSKGFGFVRYETHEAAQKAVLEL 259
Query: 334 NGYALGDRLLQV 345
+G ++ ++L V
Sbjct: 260 HGKSIDGKVLCV 271
Score = 113 (44.8 bits), Expect = 3.1e-17, Sum P(2) = 3.1e-17
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I++ NL D L + F FG++ KV+ + + KGFG VC ++++EA A+ +
Sbjct: 304 IYIKNLDETINDEKLKEEFSLFGSISRAKVMME--VGQGKGFGVVCFSSFEEASKAVNEM 361
Query: 334 NGYALGDRLLQVS 346
NG +G + L V+
Sbjct: 362 NGRVVGSKTLHVT 374
Score = 63 (27.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 26/85 (30%), Positives = 39/85 (45%)
Query: 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGI 171
+A LYV L +T++ L FRP G + +RI C R V+ +P G
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRI-C--------RDPVTRSP------LGY 61
Query: 172 GFVRFNQHIEAEHAMQELNGTIPEG 196
G+V F +AE A+ +N + G
Sbjct: 62 GYVNFRFPADAEWALNTMNFDLING 86
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 168 (64.2 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 55/185 (29%), Positives = 92/185 (49%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V + + E+L+ LF G ES K+IRD + +S G+GFV Y E A++A++
Sbjct: 199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII----TS 142
+L+G + K V Y + + I+R ++ L + + L+ RP G I
Sbjct: 258 DLHGKSIDGK---VLYVGRAQKKIER----LAELRRRFERLRLKEKSRPPGVPIYIKNLD 310
Query: 143 RILCDKMASENVRSF--VSGTPEIPQISKGIGF--VRFNQHIEAEHAMQELNGTIPEGAS 198
+ D+ E SF +S + ++ +G GF V F+ EA A+ E+NG I S
Sbjct: 311 ETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIV--GS 368
Query: 199 EPITV 203
+P+ V
Sbjct: 369 KPLHV 373
Score = 162 (62.1 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 50/178 (28%), Positives = 88/178 (49%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ L +LFS+ G + SCK++ D ++ GY +V++ A RAI
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164
Query: 88 LNGLKLQNKSIKVS-YARPSSEAIK-----RA---NLYVSGLPKHMTQEDLENLFRPYGT 138
+NG++L N+ + V + P A + RA N++V + + E L+ LF YG
Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP 224
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ +++ D SG SKG GFVR+ H A+ A+ +L+G +G
Sbjct: 225 TESVKVIRD----------ASGK------SKGFGFVRYETHEAAQKAVLDLHGKSIDG 266
Score = 151 (58.2 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 44/165 (26%), Positives = 76/165 (46%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + +T++ L F G + ++ RD T LGYG+VN+ DAE A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRA--NLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
N + K ++ +++P K N+++ L K + L LF +G I++ +++C
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
D +N G SKG +V F+ A A+ +NG
Sbjct: 140 D----DN------G-------SKGYAYVHFDSLAAANRAIWHMNG 167
Score = 119 (46.9 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV N+ + +D L +LF +G ++VKV+RD K KGFGFV ++ A A+ L
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASG-KSKGFGFVRYETHEAAQKAVLDL 259
Query: 334 NGYALGDRLLQV 345
+G ++ ++L V
Sbjct: 260 HGKSIDGKVLYV 271
Score = 114 (45.2 bits), Expect = 3.2e-17, Sum P(2) = 3.2e-17
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I++ NL D L + F FG++ KV+ + + KGFG VC ++++EA A+ +
Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361
Query: 334 NGYALGDRLLQVS 346
NG +G + L V+
Sbjct: 362 NGRIVGSKPLHVT 374
Score = 63 (27.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 26/85 (30%), Positives = 39/85 (45%)
Query: 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGI 171
+A LYV L +T++ L FRP G + +RI C R V+ +P G
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRI-C--------RDPVTRSP------LGY 61
Query: 172 GFVRFNQHIEAEHAMQELNGTIPEG 196
G+V F +AE A+ +N + G
Sbjct: 62 GYVNFRFPADAEWALNTMNFDLING 86
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 164 (62.8 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 55/186 (29%), Positives = 93/186 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ V M E+L+ +FS G ES K+IRD + +S G+GFV Y E A++A++
Sbjct: 199 TNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVL 257
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTII----TS 142
+L+G + K V Y + + I+R ++ L + + L+ RP G I
Sbjct: 258 DLHGKSINGK---VLYVGRAQKKIER----LAELRRRFERLRLKEKSRPPGVPIYIKNLD 310
Query: 143 RILCDKMASENVRSF--VSGTPEIPQISKGIGF--VRFNQHIEAEHAMQELNG-TIPEGA 197
+ D+ E SF +S + ++ +G GF V F+ +A A+ E+NG T+
Sbjct: 311 ETIDDEKLKEEFSSFGSISRAKVMVEVGQGKGFGVVCFSSFEDATKAVDEMNGRTV---G 367
Query: 198 SEPITV 203
S+P+ V
Sbjct: 368 SKPLHV 373
Score = 162 (62.1 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 49/173 (28%), Positives = 85/173 (49%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +++ L +LFS+ G + SCK++ D ++ GY +V++ A RAI
Sbjct: 107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSK--GYAYVHFDSLAAANRAIWH 164
Query: 88 LNGLKLQNKSIKVS-YARPSSEAIK-----RA---NLYVSGLPKHMTQEDLENLFRPYGT 138
+NG++L N+ + V + P A + RA N++V M E L+ +F YG
Sbjct: 165 MNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGP 224
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ +++ D SG SKG GFVR+ H A+ A+ +L+G
Sbjct: 225 TESVKVIRD----------ASGK------SKGFGFVRYETHEAAQKAVLDLHG 261
Score = 151 (58.2 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 44/165 (26%), Positives = 76/165 (46%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + +T++ L F G + ++ RD T LGYG+VN+ DAE A+ +
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 89 NGLKLQNKSIKVSYARPSSEAIKRA--NLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
N + K ++ +++P K N+++ L K + L LF +G I++ +++C
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139
Query: 147 DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
D +N G SKG +V F+ A A+ +NG
Sbjct: 140 D----DN------G-------SKGYAYVHFDSLAAANRAIWHMNG 167
Score = 117 (46.2 bits), Expect = 3.3e-16, Sum P(2) = 3.3e-16
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV N + +D L ++F +G ++VKV+RD K KGFGFV ++ A A+ L
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASG-KSKGFGFVRYETHEAAQKAVLDL 259
Query: 334 NGYALGDRLLQV 345
+G ++ ++L V
Sbjct: 260 HGKSINGKVLYV 271
Score = 113 (44.8 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I++ NL +D L + F FG++ KV+ + + KGFG VC +++++A A+ +
Sbjct: 304 IYIKNLDETIDDEKLKEEFSSFGSISRAKVM--VEVGQGKGFGVVCFSSFEDATKAVDEM 361
Query: 334 NGYALGDRLLQVS 346
NG +G + L V+
Sbjct: 362 NGRTVGSKPLHVT 374
Score = 63 (27.2 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 26/85 (30%), Positives = 39/85 (45%)
Query: 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGI 171
+A LYV L +T++ L FRP G + +RI C R V+ +P G
Sbjct: 17 KAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRI-C--------RDPVTRSP------LGY 61
Query: 172 GFVRFNQHIEAEHAMQELNGTIPEG 196
G+V F +AE A+ +N + G
Sbjct: 62 GYVNFRFPADAEWALNTMNFDLING 86
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 176 (67.0 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 58/177 (32%), Positives = 85/177 (48%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + + + + + FS G + SCK+ D+ S GYGFV++ E A+ AI +
Sbjct: 121 NIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDED-GFSKGYGFVHFETEEAAQNAIQK 179
Query: 88 LNGLKLQNKSIKVSYARPSS-------EAIKR-ANLYVSGLPKHMTQEDLENLFRPYGTI 139
+NG+ L K + V +P + E K+ N+YV H +E LE LF +G I
Sbjct: 180 VNGMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNI 239
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
TS C+ M V G SKG GFV F EAE A+Q L+ + EG
Sbjct: 240 -TS---CEVMT-------VEGK------SKGFGFVAFANPEEAETAVQALHDSTIEG 279
Score = 173 (66.0 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 47/172 (27%), Positives = 86/172 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + + + L FS+ G V S ++ RD T SLGY +VN+ + DAERA+
Sbjct: 32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N L K +++ +++ P+ N+++ L K + + + + F +G I++ ++
Sbjct: 92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
D+ G SKG GFV F A++A+Q++NG + G
Sbjct: 152 AIDE----------DG------FSKGYGFVHFETEEAAQNAIQKVNGMLLAG 187
Score = 135 (52.6 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 50/204 (24%), Positives = 94/204 (46%)
Query: 12 QSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYG 71
++ R+ + +Q +N+ V +E L+ LF+ G + SC+++ +S G+G
Sbjct: 198 RAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMT--VEGKSKGFG 255
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLEN 131
FV + E+AE A+ L+ ++ +K+ R ++ + A L KH Q E
Sbjct: 256 FVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELK----KKH-EQHKAER 310
Query: 132 LFRPYGTIITSRILCDKMASENVRS-FVS-GTPEIPQI-------SKGIGFVRFNQHIEA 182
+ + G + + L + + + ++ F S G ++ SKG GFV F + EA
Sbjct: 311 MQKYQGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEA 370
Query: 183 EHAMQELNGTIPEGASEPITVKFA 206
A+ E+N + S+P+ V A
Sbjct: 371 TSAVTEMNSKMV--CSKPLYVAIA 392
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 31/113 (27%), Positives = 59/113 (52%)
Query: 3 KHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK 62
+H E+ + H++ Q NL V + +T+ + L+ F S G + S K++ D+
Sbjct: 295 RHAELKKKHEQHKAERMQKY--QGVNLYVKNLDETVDDDGLKKQFESYGNITSAKVMTDE 352
Query: 63 TTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANL 115
+S G+GFV + + E+A A+ E+N + +K + V+ A+ + +RA L
Sbjct: 353 N-GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKED--RRAQL 402
Score = 104 (41.7 bits), Expect = 5.1e-17, Sum P(2) = 5.1e-17
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D+ L + F +G + + KV+ D + + KGFGFVC +EA A+ +
Sbjct: 319 LYVKNLDETVDDDGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEM 377
Query: 334 NGYALGDRLLQVSFKTHK 351
N + + L V+ K
Sbjct: 378 NSKMVCSKPLYVAIAQRK 395
Score = 86 (35.3 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V N L +LF FG + + +V+ K KGFGFV N +EA A+Q+L
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEG--KSKGFGFVAFANPEEAETAVQAL 272
Query: 334 N 334
+
Sbjct: 273 H 273
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 170 (64.9 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 51/168 (30%), Positives = 82/168 (48%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIR-DKTTAQSLGYGFVNYYRTEDAERAII 86
++ V + +T+ LQ +F+S G VES KLIR DK++ YGFV+Y+ A AI+
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-----YGFVHYFDRRSAALAIL 114
Query: 87 ELNGLKLQNKSIKVSYARPSSE---AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
LNG L + IKV++A + + N++V L +T L F + + +R
Sbjct: 115 SLNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDAR 174
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ D+ S+G GFV F +A+ A+ E+NG
Sbjct: 175 VMWDQKTGR---------------SRGFGFVSFRNQQDAQTAINEMNG 207
Score = 142 (55.0 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 53/210 (25%), Positives = 92/210 (43%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
+T Q + + N+ V + +T L FS +++ D+ T +S G+GFV++
Sbjct: 133 ATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSF 192
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSS----EAIKRANLYVSGLPKHMTQEDLEN 131
+DA+ AI E+NG L ++ I+ ++A + + + V L +++ E
Sbjct: 193 RNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKET 252
Query: 132 LFR--PYGTIITSRILCDKMASENV-----RSFVS-GTPEIPQI----SKGIGFVRFNQH 179
L P + + +A E R F + G I ++ KG GFVR+N H
Sbjct: 253 LNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDKGFGFVRYNTH 312
Query: 180 IEAEHAMQELNGTIPEGASEPITVKFANSP 209
EA A+Q + T P + I + N P
Sbjct: 313 PEAALAIQ-MGNTQPYLFNRQIKCSWGNKP 341
Score = 132 (51.5 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV +L+PE D L+Q F F + + +V+ D +T + +GFGFV N +A AI +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 334 NGYALGDRLLQVSFKT 349
NG L R ++ ++ T
Sbjct: 206 NGKWLSSRQIRCNWAT 221
Score = 102 (41.0 bits), Expect = 9.8e-17, Sum P(2) = 9.8e-17
Identities = 33/85 (38%), Positives = 45/85 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGA--VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331
++V NLAPE L + F GA ++ V+V RD KGFGFV + EA AIQ
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD------KGFGFVRYNTHPEAALAIQ 320
Query: 332 SLNGYA-LGDRLLQVSFKTHKPLPP 355
N L +R ++ S+ +KP PP
Sbjct: 321 MGNTQPYLFNRQIKCSWG-NKPTPP 344
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 172 (65.6 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 50/157 (31%), Positives = 76/157 (48%)
Query: 38 MTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97
+T+ LQ +F+ G VESCKLIR + ++ YGFV+Y+ A AI+ LNG L +
Sbjct: 65 VTEPLLQEVFAGTGPVESCKLIRKEKSS----YGFVHYFDRRSAGLAILSLNGRHLFGQP 120
Query: 98 IKVSYARPSSE---AIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENV 154
IKV++A S + N++V L +T L F Y T +R++ D+
Sbjct: 121 IKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGR-- 178
Query: 155 RSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
S+G GFV F +A+ A+ E+ G
Sbjct: 179 -------------SRGFGFVSFRNQQDAQTAIDEITG 202
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 51/190 (26%), Positives = 85/190 (44%)
Query: 18 YQSDVNEQNS---NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN 74
Y S E S N+ V + +T L FS +++ D+ T +S G+GFV+
Sbjct: 127 YASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVS 186
Query: 75 YYRTEDAERAIIELNGLKLQNKSIKVSYA---------RPSSEAIKRANLYVSGLP---K 122
+ +DA+ AI E+ G L ++ I+ ++A + SS++ L SG+ K
Sbjct: 187 FRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVEL-TSGVSEDGK 245
Query: 123 HMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS-GTPEIPQI----SKGIGFVRFN 177
T + Y T+ + + + R F S G I ++ KG GFVR++
Sbjct: 246 DTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYS 305
Query: 178 QHIEAEHAMQ 187
H+EA A+Q
Sbjct: 306 THVEAALAIQ 315
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV +L+PE D +L+ F + + +V+ D +T + +GFGFV N +A AI +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 334 NGYALGDRLLQVSFKT 349
G LG R ++ ++ T
Sbjct: 201 TGKWLGSRQIRCNWAT 216
Score = 99 (39.9 bits), Expect = 1.0e-16, Sum P(2) = 1.0e-16
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGA--VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331
++V NLAPE L + F GA ++ V+V RD KGFGFV + + EA AIQ
Sbjct: 262 VYVGNLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHVEAALAIQ 315
Query: 332 SLNGYA-LGDRLLQVSFKTHKPLP 354
N ++ L R ++ S+ + KP P
Sbjct: 316 MGNTHSYLSGRQMKCSWGS-KPTP 338
>UNIPROTKB|B4KX02 [details] [associations]
symbol:shep "Protein alan shepard" species:7230 "Drosophila
mojavensis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH933809 OrthoDB:EOG4C8687 RefSeq:XP_002008147.1
ProteinModelPortal:B4KX02 EnsemblMetazoa:FBtr0162707 GeneID:6582444
KEGG:dmo:Dmoj_GI11982 FlyBase:FBgn0134739 InParanoid:B4KX02
Uniprot:B4KX02
Length = 592
Score = 226 (84.6 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 65/209 (31%), Positives = 103/209 (49%)
Query: 9 NTTQSHRSTYQSDVNEQN------SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK 62
NTT T Q+ N+Q +NL + + Q T ++L ++ + G + S K I DK
Sbjct: 206 NTTMGPNGTAQNQ-NQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDK 264
Query: 63 TTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY---ARPSSEAIKR-ANLYVS 118
TT + GYGFV++ + AE A+ L +Q + KV RP+ + + NLY++
Sbjct: 265 TTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIA 324
Query: 119 GLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQ 178
LP H + DLE + +G ++++RIL D+ + SKG+GF R
Sbjct: 325 NLPPHFKETDLEAMLAKFGQVVSTRILRDQQMN----------------SKGVGFARMES 368
Query: 179 HIEAEHAMQELNGTIPEGASEPITVKFAN 207
+ E +Q NG GA +P+ VKFA+
Sbjct: 369 REKCEQIIQMFNGNTITGAKDPLLVKFAD 397
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 195 (73.7 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 55/173 (31%), Positives = 91/173 (52%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+E L V + + +T+ + LFS +G ++CK+I D TA + Y FV ++ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMTQEDLENLFRPYGT 138
A+ +NG K+ K +KV++A PSS+ +N ++V L +T ED++ F P+G
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
I +R++ D MA+ SKG GFV F +AE+A+Q++ G
Sbjct: 121 ISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQQMGG 158
Score = 149 (57.5 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 97 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 156
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 157 GGQWLGGRQIRTNWATRKPPAP 178
Score = 143 (55.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 41/167 (24%), Positives = 80/167 (47%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G + ++++D T +S GYGFV++
Sbjct: 85 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 143
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+ DAE AI ++ G L + I+ ++A A K + Y S K ++ +++ N P
Sbjct: 144 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDEVVNQSSP 200
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQ 178
+ + + + +R S +I +I KG FVR Q
Sbjct: 201 SNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRQTQ 247
Score = 52 (23.4 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMT 321
+ ++ Q F PFG + ++V D KG+ FV T
Sbjct: 216 EQLMRQTFSPFGQIMEIRVFPD------KGYSFVRQT 246
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 151 (58.2 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 38/92 (41%), Positives = 51/92 (55%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
M P S+ G C +F+Y+L E D L Q+F PFG V + KV D T + K FGFV
Sbjct: 325 MFPGCSISGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVS 384
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
N A AIQ++NG+ +G + L+V K K
Sbjct: 385 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 416
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL +F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 335 EGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSFDNPASAQAA 394
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 395 IQAMNGFQIGMKRLKVQLKRP 415
Score = 121 (47.7 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
Identities = 41/122 (33%), Positives = 64/122 (52%)
Query: 91 LKLQNKSIKVSYARPSS--EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
+KL N+++++ A S E + R L+V L K T++D+ +F P+GTI IL
Sbjct: 32 IKLMNRALQLKPAENESRSEHLDR-KLFVGMLSKQQTEDDVRQIFHPFGTIEECTIL--- 87
Query: 149 MASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITVKFA 206
G P+ SKG FV+F EA+ A+ L+G T+P GAS + VK+A
Sbjct: 88 ----------RG-PD--GASKGCAFVKFGSQQEAQSAITNLHGSQTMP-GASSSLVVKYA 133
Query: 207 NS 208
++
Sbjct: 134 DT 135
Score = 106 (42.4 bits), Expect = 6.9e-15, Sum P(2) = 6.9e-15
Identities = 30/112 (26%), Positives = 54/112 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + + T+++++ +F G +E C ++R A S G FV + ++A+ AI L
Sbjct: 57 LFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGA-SKGCAFVKFGSQQEAQSAITNL 115
Query: 89 NGLKLQ---NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYG 137
+G + + S+ V YA E R ++G ++ + N F PYG
Sbjct: 116 HGSQTMPGASSSLVVKYADTEKERQIRRMQQMAG-HMNLLNPFVFNQFSPYG 166
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 164 (62.8 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 55/194 (28%), Positives = 95/194 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ LF G++ +++D+ T G F+ Y E A + A+
Sbjct: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
Query: 86 IELNGLKLQNKSIKV----SYARPSSEAIKRA-----NLYVSGLPKHMTQEDLENLFRPY 136
E L N+ I+V S +R S +++ L+V L K +++D+ LF +
Sbjct: 116 HEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAF 175
Query: 137 GTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIP 194
G I IL G P+ SKG FV+++ H EA+ A+ L+G T+P
Sbjct: 176 GNIEECTIL-------------RG-PD--GNSKGCAFVKYSSHAEAQAAINALHGSQTMP 219
Query: 195 EGASEPITVKFANS 208
GAS + VKFA++
Sbjct: 220 -GASSSLVVKFADT 232
Score = 95 (38.5 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q+ L V + + ++++++ LF + G +E C ++R S G FV Y +A+ A
Sbjct: 150 QDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAA 208
Query: 85 IIELNGLKLQ---NKSIKVSYARPSSEAIKRANLYVSG 119
I L+G + + S+ V +A E R ++G
Sbjct: 209 INALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAG 246
Score = 72 (30.4 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 315 FGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 480
Score = 70 (29.7 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAV 298
M+P + G C +F+Y+L E D L Q+F PFG V
Sbjct: 409 MIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 447
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 164 (62.8 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 55/194 (28%), Positives = 95/194 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ LF G++ +++D+ T G F+ Y E A + A+
Sbjct: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
Query: 86 IELNGLKLQNKSIKV----SYARPSSEAIKRA-----NLYVSGLPKHMTQEDLENLFRPY 136
E L N+ I+V S +R S +++ L+V L K +++D+ LF +
Sbjct: 116 HEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAF 175
Query: 137 GTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIP 194
G I IL G P+ SKG FV+++ H EA+ A+ L+G T+P
Sbjct: 176 GNIEECTIL-------------RG-PD--GNSKGCAFVKYSSHAEAQAAINALHGSQTMP 219
Query: 195 EGASEPITVKFANS 208
GAS + VKFA++
Sbjct: 220 -GASSSLVVKFADT 232
Score = 95 (38.5 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q+ L V + + ++++++ LF + G +E C ++R S G FV Y +A+ A
Sbjct: 150 QDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAA 208
Query: 85 IIELNGLKLQ---NKSIKVSYARPSSEAIKRANLYVSG 119
I L+G + + S+ V +A E R ++G
Sbjct: 209 INALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAG 246
Score = 72 (30.4 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 315 FGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 480
Score = 70 (29.7 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
Identities = 16/39 (41%), Positives = 22/39 (56%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAV 298
M+P + G C +F+Y+L E D L Q+F PFG V
Sbjct: 409 MIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 447
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 198 (74.8 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ETNTKQLRFEDVVNQSSP 219
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
Query: 192 TIPEG 196
T EG
Sbjct: 280 TTIEG 284
Score = 178 (67.7 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 56/186 (30%), Positives = 94/186 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ----SLG----------- 69
Q L V + + +T+ + LFS +G +SCK+I ++ ++ S+G
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMT 125
Y FV +Y DA A+ +NG K+ K +KV++A PSS+ +N ++V L +T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
ED+++ F P+G I +R++ D MA+ SKG GFV F ++AE+A
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGK--------------SKGYGFVSFYNKLDAENA 171
Query: 186 MQELNG 191
+ + G
Sbjct: 172 IVHMGG 177
Score = 142 (55.0 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAP 197
Score = 85 (35.0 bits), Expect = 2.8e-16, Sum P(2) = 2.8e-16
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 277
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 278 NGTTIEGHVVKCYWGKESP 296
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 198 (74.8 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ETNTKQLRFEDVVNQSSP 219
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
Query: 192 TIPEG 196
T EG
Sbjct: 280 TTIEG 284
Score = 178 (67.7 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 56/186 (30%), Positives = 94/186 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ----SLG----------- 69
Q L V + + +T+ + LFS +G +SCK+I ++ ++ S+G
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMT 125
Y FV +Y DA A+ +NG K+ K +KV++A PSS+ +N ++V L +T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
ED+++ F P+G I +R++ D MA+ SKG GFV F ++AE+A
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGK--------------SKGYGFVSFYNKLDAENA 171
Query: 186 MQELNG 191
+ + G
Sbjct: 172 IVHMGG 177
Score = 142 (55.0 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAP 197
Score = 85 (35.0 bits), Expect = 2.9e-16, Sum P(2) = 2.9e-16
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 277
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 278 NGTTIEGHVVKCYWGKESP 296
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 200 (75.5 bits), Expect = 9.2e-14, P = 9.2e-14
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 103 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 161
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 162 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ENNTKQLRFEDVVNQSSP 218
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 219 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 278
Query: 192 TIPEG 196
T EG
Sbjct: 279 TTIEG 283
Score = 178 (67.7 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 56/186 (30%), Positives = 94/186 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ----SLG----------- 69
Q L V + + +T+ + LFS +G +SCK+I ++ ++ S+G
Sbjct: 6 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 65
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMT 125
Y FV +Y DA A+ +NG K+ K +KV++A PSS+ +N ++V L +T
Sbjct: 66 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 125
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
ED+++ F P+G I +R++ D MA+ SKG GFV F ++AE+A
Sbjct: 126 TEDIKSAFAPFGKISDARVVKD-MATGK--------------SKGYGFVSFYNKLDAENA 170
Query: 186 MQELNG 191
+ + G
Sbjct: 171 IVHMGG 176
Score = 142 (55.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 115 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 174
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 175 GGQWLGGRQIRTNWATRKPPAP 196
Score = 85 (35.0 bits), Expect = 3.7e-16, Sum P(2) = 3.7e-16
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 223 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 276
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 277 NGTTIEGHVVKCYWGKESP 295
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 200 (75.5 bits), Expect = 9.3e-14, P = 9.3e-14
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ENNTKQLRFEDVVNQSSP 219
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
Query: 192 TIPEG 196
T EG
Sbjct: 280 TTIEG 284
Score = 178 (67.7 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 56/186 (30%), Positives = 94/186 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ----SLG----------- 69
Q L V + + +T+ + LFS +G +SCK+I ++ ++ S+G
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMT 125
Y FV +Y DA A+ +NG K+ K +KV++A PSS+ +N ++V L +T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
ED+++ F P+G I +R++ D MA+ SKG GFV F ++AE+A
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGK--------------SKGYGFVSFYNKLDAENA 171
Query: 186 MQELNG 191
+ + G
Sbjct: 172 IVHMGG 177
Score = 142 (55.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAP 197
Score = 85 (35.0 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 277
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 278 NGTTIEGHVVKCYWGKESP 296
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 200 (75.5 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ENNTKQLRFEDVVNQSSP 219
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
Query: 192 TIPEG 196
T EG
Sbjct: 280 TTIEG 284
Score = 178 (67.7 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 56/186 (30%), Positives = 94/186 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ----SLG----------- 69
Q L V + + +T+ + LFS +G +SCK+I ++ ++ S+G
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMT 125
Y FV +Y DA A+ +NG K+ K +KV++A PSS+ +N ++V L +T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
ED+++ F P+G I +R++ D MA+ SKG GFV F ++AE+A
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGK--------------SKGYGFVSFYNKLDAENA 171
Query: 186 MQELNG 191
+ + G
Sbjct: 172 IVHMGG 177
Score = 142 (55.0 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAP 197
Score = 85 (35.0 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 277
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 278 NGTTIEGHVVKCYWGKESP 296
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 200 (75.5 bits), Expect = 9.5e-14, P = 9.5e-14
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ENNTKQLRFEDVVNQSSP 219
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
Query: 192 TIPEG 196
T EG
Sbjct: 280 TTIEG 284
Score = 178 (67.7 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 56/186 (30%), Positives = 94/186 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ----SLG----------- 69
Q L V + + +T+ + LFS +G +SCK+I ++ ++ S+G
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMT 125
Y FV +Y DA A+ +NG K+ K +KV++A PSS+ +N ++V L +T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
ED+++ F P+G I +R++ D MA+ SKG GFV F ++AE+A
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGK--------------SKGYGFVSFYNKLDAENA 171
Query: 186 MQELNG 191
+ + G
Sbjct: 172 IVHMGG 177
Score = 142 (55.0 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAP 197
Score = 85 (35.0 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 277
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 278 NGTTIEGHVVKCYWGKESP 296
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 198 (74.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ETNTKQLRFEDVVNQSSP 219
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
Query: 192 TIPEG 196
T EG
Sbjct: 280 TTIEG 284
Score = 178 (67.7 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 56/186 (30%), Positives = 94/186 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ----SLG----------- 69
Q L V + + +T+ + LFS +G +SCK+I ++ ++ S+G
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMT 125
Y FV +Y DA A+ +NG K+ K +KV++A PSS+ +N ++V L +T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
ED+++ F P+G I +R++ D MA+ SKG GFV F ++AE+A
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGK--------------SKGYGFVSFYNKLDAENA 171
Query: 186 MQELNG 191
+ + G
Sbjct: 172 IVHMGG 177
Score = 142 (55.0 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAP 197
Score = 85 (35.0 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 277
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 278 NGTTIEGHVVKCYWGKESP 296
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 198 (74.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 51/185 (27%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G++ ++++D T +S GYGFV++
Sbjct: 104 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + ED+ N P
Sbjct: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQ---ETNTKQLRFEDVVNQSSP 219
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + + +R S +I +I KG FVRF+ H A HA+ +NG
Sbjct: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNG 279
Query: 192 TIPEG 196
T EG
Sbjct: 280 TTIEG 284
Score = 178 (67.7 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 56/186 (30%), Positives = 94/186 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ----SLG----------- 69
Q L V + + +T+ + LFS +G +SCK+I ++ ++ S+G
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMT 125
Y FV +Y DA A+ +NG K+ K +KV++A PSS+ +N ++V L +T
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
ED+++ F P+G I +R++ D MA+ SKG GFV F ++AE+A
Sbjct: 127 TEDIKSAFAPFGKISDARVVKD-MATGK--------------SKGYGFVSFYNKLDAENA 171
Query: 186 MQELNG 191
+ + G
Sbjct: 172 IVHMGG 177
Score = 142 (55.0 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 176 GGQWLGGRQIRTNWATRKPPAP 197
Score = 85 (35.0 bits), Expect = 3.9e-16, Sum P(2) = 3.9e-16
Identities = 20/79 (25%), Positives = 39/79 (49%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V P+ KG+ FV + ++ A AI S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSV 277
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 278 NGTTIEGHVVKCYWGKESP 296
>UNIPROTKB|C9JB16 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL161628 EMBL:AL445623 HGNC:HGNC:3313 IPI:IPI00645584
ProteinModelPortal:C9JB16 SMR:C9JB16 STRING:C9JB16
Ensembl:ENST00000423281 ArrayExpress:C9JB16 Bgee:C9JB16
Uniprot:C9JB16
Length = 90
Score = 202 (76.2 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 47/86 (54%), Positives = 60/86 (69%)
Query: 124 MTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAE 183
MTQ++LE LF YG IITSRIL D+ V+G IS+G+GF+RF++ IEAE
Sbjct: 1 MTQKELEQLFSQYGRIITSRILVDQ---------VTG------ISRGVGFIRFDKRIEAE 45
Query: 184 HAMQELNGTIPEGASEPITVKFANSP 209
A++ LNG P GA+EPITVKFAN+P
Sbjct: 46 EAIKGLNGQKPPGATEPITVKFANNP 71
Score = 117 (46.2 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 29/80 (36%), Positives = 45/80 (56%)
Query: 38 MTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97
MTQ+EL+ LFS G + + +++ D+ T S G GF+ + + +AE AI LNG K +
Sbjct: 1 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGAT 60
Query: 98 --IKVSYARPSSEAIKRANL 115
I V +A S+ +A L
Sbjct: 61 EPITVKFANNPSQKTNQAIL 80
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 157 (60.3 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 40/114 (35%), Positives = 62/114 (54%)
Query: 242 HHSARFK--FAPLTADLLNNS-MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGA 297
H++A + +AP++ + ++P + G C +F+Y+L E D L Q+F PFG
Sbjct: 235 HYAAAYPTAYAPISQAFPQQAPIIPQQQREGPEGCNLFIYHLPQEFGDAELTQMFLPFGN 294
Query: 298 VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
V + KV D T + K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 295 VISAKVFVDRATNQSKCFGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPK 348
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL +F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 267 EGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPTSAQAA 326
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 327 IQAMNGFQIGMKRLKVQLKRP 347
Score = 107 (42.7 bits), Expect = 4.9e-16, Sum P(2) = 4.9e-16
Identities = 34/96 (35%), Positives = 51/96 (53%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L+V L K +++D+ LF P+G I IL R P+ SKG FV
Sbjct: 5 LFVGMLGKQQSEDDVRRLFEPFGQIEECTIL---------RG-----PD--GASKGCAFV 48
Query: 175 RFNQHIEAEHAMQELNG--TIPEGASEPITVKFANS 208
+++ H EA+ A+ L+G T+P GAS + VKFA++
Sbjct: 49 KYSSHAEAQAAISSLHGSQTMP-GASSSLVVKFADT 83
Score = 94 (38.1 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 25/98 (25%), Positives = 48/98 (48%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L V + + ++++++ LF G++E C ++R A S G FV Y +A+ A
Sbjct: 1 EDRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGA-SKGCAFVKYSSHAEAQAA 59
Query: 85 IIELNGLKLQ---NKSIKVSYARPSSEAIKRANLYVSG 119
I L+G + + S+ V +A E R ++G
Sbjct: 60 ISSLHGSQTMPGASSSLVVKFADTDKERTLRRMHQMAG 97
Score = 87 (35.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L +F P+G +I++++ D+ ++
Sbjct: 264 EGPEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQ--------------- 308
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 309 SKCFGFVSFDNPTSAQAAIQAMNG 332
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 174 (66.3 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 53/185 (28%), Positives = 91/185 (49%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ LF G++ +++D+ T G F+ Y E A + A+
Sbjct: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
E L N+ I+V A S ++ L+V L K +++D+ LF +G I IL
Sbjct: 116 HEQKTLPGMNRPIQVKPADSESRGDRK--LFVGMLNKQQSEDDVRRLFEAFGNIEECTIL 173
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGASEPITV 203
+ N SKG FV+++ H EA+ A+ L+G T+P GAS + V
Sbjct: 174 --RGPDGN--------------SKGCAFVKYSSHAEAQAAINALHGSQTMP-GASSSLVV 216
Query: 204 KFANS 208
KFA++
Sbjct: 217 KFADT 221
Score = 91 (37.1 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFG 316
M+P + G C +F+Y+L E D L Q+F PFG V + KV D T + K FG
Sbjct: 397 MIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFG 453
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 160 (61.4 bits), Expect = 8.7e-09, P = 8.7e-09
Identities = 59/191 (30%), Positives = 95/191 (49%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
N+ ++N+ V + +T+T + L LFS G V S ++RD +S G+GFVN+ E+A+
Sbjct: 198 NQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGM-GRSRGFGFVNFCNPENAK 256
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSG--LPK-HMTQEDL--ENLFRPYG 137
+A+ L GL+L +K + V A E + S + K +M +L +NL
Sbjct: 257 KAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMN 316
Query: 138 TIITSRIL-C-DKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPE 195
I C ++ S V +G SKG GFV F+ E++ A + LNG + +
Sbjct: 317 ETRLREIFGCYGQIVSAKVMCHENGR------SKGFGFVCFSNCEESKQAKRYLNGFLVD 370
Query: 196 GASEPITVKFA 206
G +PI V+ A
Sbjct: 371 G--KPIVVRVA 379
Score = 158 (60.7 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 56/194 (28%), Positives = 93/194 (47%)
Query: 23 NEQNSN----LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT 78
N Q+S+ L V + +T+++L FS V S L R+ T +S+ Y ++N+
Sbjct: 13 NHQHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSP 72
Query: 79 EDAERAIIELNGLKLQNKSIKVSYARPSSEAIKR-----ANLYVSGLPKHMTQEDLENLF 133
A A+ LN L+ K++++ +++ +R ANLYV L +T LE +F
Sbjct: 73 FSASNAMTRLNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMF 132
Query: 134 RPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
P+G+I++ C K+ EN +S KG GFV+F+ A A L+G++
Sbjct: 133 CPFGSILS----C-KVVEENGQS------------KGFGFVQFDTEQSAVSARSALHGSM 175
Query: 194 PEGASEPITVKFAN 207
G + KF N
Sbjct: 176 VYG-KKLFVAKFIN 188
Score = 145 (56.1 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 42/169 (24%), Positives = 77/169 (45%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIR 60
+ K E Q + + N + SNL V + ++M + L+ +F G++ S K++
Sbjct: 278 LKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMC 337
Query: 61 DKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGL 120
+ +S G+GFV + E++++A LNG + K I V A + IKR Y
Sbjct: 338 HEN-GRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQ 396
Query: 121 PKHMTQE-DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQIS 168
P+ TQ + +P + ++S C + + G ++PQ+S
Sbjct: 397 PRQYTQAPSAPSPAQPVLSYVSSSYGCFQPFQVGTSYYYMGN-QVPQMS 444
Score = 111 (44.1 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
Identities = 28/72 (38%), Positives = 40/72 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D+ L LF +G V +V V+RD + +GFGFV N + A A++SL
Sbjct: 204 VYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMG-RSRGFGFVNFCNPENAKKAMESL 262
Query: 334 NGYALGDRLLQV 345
G LG + L V
Sbjct: 263 CGLQLGSKKLFV 274
Score = 108 (43.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 272 WC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
W ++V NL+ + L ++FG +G + + KV+ + + KGFGFVC +N +E+ A
Sbjct: 303 WSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAK 361
Query: 331 QSLNGYALGDRLLQVSFKTHK 351
+ LNG+ + + + V K
Sbjct: 362 RYLNGFLVDGKPIVVRVAERK 382
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 171 (65.3 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 49/169 (28%), Positives = 87/169 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + ++T+ L F+ + S +L +D ++ +SL YG+ N+ +DA AI
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRA--NLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+ N L K I+V ++ + +A + N++V LP+ +T L+++F+ +G I++
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVS--- 140
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
C V + G S+G GFV+F Q A A+Q LN TI
Sbjct: 141 -C------KVATLEDGK------SRGYGFVQFEQEDAAHAAIQTLNSTI 176
Score = 156 (60.0 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
Identities = 47/169 (27%), Positives = 79/169 (46%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V +P+++T LQ +F G + SCK + +S GYGFV + + + A AI
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCK-VATLEDGKSRGYGFVQFEQEDAAHAAIQT 171
Query: 88 LNGLKLQNKSIKVSYARPSSEAIKR----ANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
LN + +K I V ++ +K NLY+ L ++++ L F +G I++
Sbjct: 172 LNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLA 231
Query: 144 ILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192
I D EN ++ +G FV F+ +A A + +NGT
Sbjct: 232 IAKD----EN------------RLCRGYAFVNFDNPEDARRAAETVNGT 264
Score = 126 (49.4 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 46/187 (24%), Positives = 87/187 (46%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
E+ +NL + + ++++ L+ F+ G++ S + +D+ GY FVN+ EDA R
Sbjct: 198 EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRL-CRGYAFVNFDNPEDARR 256
Query: 84 AIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSR 143
A +NG K +K + V A+ +E + L KH Q+ + + Y +
Sbjct: 257 AAETVNGTKFGSKCLYVGRAQKKAE--REQLLREQFKEKHEEQKMIAKVSNIYVKNVNVA 314
Query: 144 ILCDKMASENVR-SFVSGTP---EIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
+ +++ + ++ T + SKG GFV F+ EA A++ +G + G +
Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHG--K 372
Query: 200 PITVKFA 206
P+ V A
Sbjct: 373 PLYVAIA 379
Score = 97 (39.2 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 19/72 (26%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL + +++L + F FG + ++ + +D + C+G+ FV N ++A A +++
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 334 NGYALGDRLLQV 345
NG G + L V
Sbjct: 262 NGTKFGSKCLYV 273
Score = 95 (38.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I+V N+ + L + F G + + K++ D + K KGFGFVC + +EA+ A+++
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAVKTF 364
Query: 334 NGYALGDRLLQVSFKTHK 351
+G + L V+ K
Sbjct: 365 HGQMFHGKPLYVAIAQKK 382
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 191 (72.3 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 54/167 (32%), Positives = 89/167 (53%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + + +T+ + LFS +G ++CK+I D TA + Y FV ++ A A+ +
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 89 NGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
NG K+ K +KV++A PSS+ +N ++V L +T ED++ F P+G I +R+
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARV 122
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+ D MA+ SKG GFV F +AE+A+Q++ G
Sbjct: 123 VKD-MATGK--------------SKGYGFVSFFNKWDAENAIQQMGG 154
Score = 149 (57.5 bits), Expect = 3.6e-08, P = 3.6e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 93 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 152
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 153 GGQWLGGRQIRTNWATRKPPAP 174
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 39/167 (23%), Positives = 80/167 (47%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T E+++ F+ G + ++++D T +S GYGFV++
Sbjct: 81 SSQKKDTSNHFHVFVGDLSPE-ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSF 139
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+ DAE AI ++ G L + I+ ++A A K + Y S K ++ +++ + P
Sbjct: 140 FNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDEVVSQSSP 196
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQ 178
+ + + + +R S +I +I KG F+R Q
Sbjct: 197 GNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRQTQ 243
Score = 51 (23.0 bits), Expect = 9.0e-16, Sum P(2) = 9.0e-16
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMT 321
+ ++ Q F PFG + ++V D KG+ F+ T
Sbjct: 212 EQLMRQTFSPFGQIMEIRVFPD------KGYSFIRQT 242
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 164 (62.8 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 55/194 (28%), Positives = 95/194 (48%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA---ERAI 85
L + +P+ + +++L+ LF G++ +++D+ T G F+ Y E A + A+
Sbjct: 56 LFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSAL 115
Query: 86 IELNGLKLQNKSIKV----SYARPSSEAIKRA-----NLYVSGLPKHMTQEDLENLFRPY 136
E L N+ I+V S +R S +++ L+V L K +++D+ LF +
Sbjct: 116 HEQKTLPGMNRPIQVKPADSESRGGSSCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAF 175
Query: 137 GTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIP 194
G I IL G P+ SKG FV+++ H EA+ A+ L+G T+P
Sbjct: 176 GNIEECTIL-------------RG-PD--GNSKGCAFVKYSSHAEAQAAINALHGSQTMP 219
Query: 195 EGASEPITVKFANS 208
GAS + VKFA++
Sbjct: 220 -GASSSLVVKFADT 232
Score = 95 (38.5 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 25/98 (25%), Positives = 47/98 (47%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q+ L V + + ++++++ LF + G +E C ++R S G FV Y +A+ A
Sbjct: 150 QDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAA 208
Query: 85 IIELNGLKLQ---NKSIKVSYARPSSEAIKRANLYVSG 119
I L+G + + S+ V +A E R ++G
Sbjct: 209 INALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAG 246
Score = 72 (30.4 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 315 FGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 444 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 480
Score = 64 (27.6 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAV 298
M+P + G C + +Y+L E D L Q+F PFG V
Sbjct: 409 MIPQQQREGPEGCNLLIYHLPQEFGDAELMQMFLPFGFV 447
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 163 (62.4 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 50/175 (28%), Positives = 84/175 (48%)
Query: 24 EQNSN-LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKT-TAQSLGYGFVNYYRTEDA 81
E N L V + +T++ L+ +F + G V S K+I DK ++ YGFV + A
Sbjct: 86 EPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAA 145
Query: 82 ERAIIELNGLKLQNKSIKVSYARPSSEAIKR--AN---LYVSGLPKHMTQEDLENLFRPY 136
ERA+ LNG ++ I+V++A S+ A K +N ++V L + E L F +
Sbjct: 146 ERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAF 205
Query: 137 GTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
G++ +R++ D S+G GFV F + +AE A+ ++G
Sbjct: 206 GSVSEARVMWDMKTGR---------------SRGYGFVAFRERADAEKALTSMDG 245
Score = 133 (51.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV +L+ E D VL Q F FG+V +V+ D +T + +G+GFV +A A+ S+
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 334 NGYALGDRLLQVSFKTHKPLPPV 356
+G LG R ++ ++ K P +
Sbjct: 244 DGEWLGSRAIRCNWANQKGQPSI 266
Score = 118 (46.6 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 29/96 (30%), Positives = 50/96 (52%)
Query: 18 YQSDV--NEQNSN---LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGF 72
YQS+ E SN + V + + E L FS+ G V +++ D T +S GYGF
Sbjct: 168 YQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGF 227
Query: 73 VNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE 108
V + DAE+A+ ++G L +++I+ ++A +
Sbjct: 228 VAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQ 263
Score = 100 (40.3 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 275 FVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN 334
+V NL P T N + LF FG V ++ D +GF F+ M ++ A AI LN
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD------RGFAFIKMDTHENAASAICQLN 364
Query: 335 GYALGDRLLQVSFKTHKP 352
GY + R L+ S+ +P
Sbjct: 365 GYNVNGRPLKCSWGKDRP 382
Score = 95 (38.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 33/88 (37%), Positives = 44/88 (50%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
R + E KRA LYV GL +T++ L+ +F G +I+ +I+ DK N S G
Sbjct: 82 RAAPEPNKRA-LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDK----NFNS--KGA-- 132
Query: 164 IPQISKGIGFVRFNQHIEAEHAMQELNG 191
GFV F+ AE AMQ LNG
Sbjct: 133 ------NYGFVEFDDPGAAERAMQTLNG 154
Score = 63 (27.2 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 116 YVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
YV L + TQ D+ LF+ +G +I +R+ D+
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQADR 343
Score = 50 (22.7 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 166 QISKGIGFVRFNQHIEAEHAMQELNG 191
Q +G F++ + H A A+ +LNG
Sbjct: 340 QADRGFAFIKMDTHENAASAICQLNG 365
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 198 (74.8 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 53/186 (28%), Positives = 92/186 (49%)
Query: 16 STYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN 74
ST S Q+ ++ V + +T E+++ F+ G + ++++D T +S GYGFV+
Sbjct: 94 STVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153
Query: 75 YYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFR 134
++ DAE AI ++ G L + I+ ++A A K + Y S K ++ +++ N
Sbjct: 154 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDEVVNQSS 210
Query: 135 PYGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELN 190
P + + + + +R S +I +I KG FVRFN H A HA+ +N
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVN 270
Query: 191 GTIPEG 196
GT EG
Sbjct: 271 GTTIEG 276
Score = 178 (67.7 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+E L V + + +T+ + LFS +G ++CK+I D TA + Y FV +Y A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAA 60
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSE----------AIKRA----NLYVSGLPKHMTQE 127
A+ +NG K+ K +KV++A PSS+ + +R+ +++V L +T E
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
D++ F P+G I +R++ D MA+ SKG GFV F +AE+A+Q
Sbjct: 121 DIKAAFAPFGRISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQ 165
Query: 188 ELNG 191
++ G
Sbjct: 166 QMGG 169
Score = 149 (57.5 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAP 189
Score = 78 (32.5 bits), Expect = 1.9e-15, Sum P(2) = 1.9e-15
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335
+ ++ Q F PFG + ++V D KG+ FV +++ A AI S+NG
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 198 (74.8 bits), Expect = 1.7e-13, P = 1.7e-13
Identities = 53/186 (28%), Positives = 92/186 (49%)
Query: 16 STYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN 74
ST S Q+ ++ V + +T E+++ F+ G + ++++D T +S GYGFV+
Sbjct: 94 STVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153
Query: 75 YYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFR 134
++ DAE AI ++ G L + I+ ++A A K + Y S K ++ +++ N
Sbjct: 154 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDEVVNQSS 210
Query: 135 PYGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELN 190
P + + + + +R S +I +I KG FVRFN H A HA+ +N
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVN 270
Query: 191 GTIPEG 196
GT EG
Sbjct: 271 GTTIEG 276
Score = 178 (67.7 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 56/184 (30%), Positives = 94/184 (51%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+E L V + + +T+ + LFS +G ++CK+I D TA + Y FV +Y A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFYEHRHAA 60
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSE----------AIKRA----NLYVSGLPKHMTQE 127
A+ +NG K+ K +KV++A PSS+ + +R+ +++V L +T E
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
D++ F P+G I +R++ D MA+ SKG GFV F +AE+A+Q
Sbjct: 121 DIKAAFAPFGRISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQ 165
Query: 188 ELNG 191
++ G
Sbjct: 166 QMGG 169
Score = 149 (57.5 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAP 189
Score = 78 (32.5 bits), Expect = 2.1e-15, Sum P(2) = 2.1e-15
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335
+ ++ Q F PFG + ++V D KG+ FV +++ A AI S+NG
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 178 (67.7 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 217
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 218 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 270
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 271 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 328
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 329 KPLYVALA 336
Score = 150 (57.9 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 45/133 (33%), Positives = 71/133 (53%)
Query: 67 SLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVS 118
S GYGFV++ E AERAI ++NG+ L ++ + V +R EA RA N+Y+
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 164
Query: 119 GLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQ 178
+ M E L++LF +G ++ +++ D+ SG SKG GFV F +
Sbjct: 165 NFGEDMDDERLKDLFGKFGPALSVKVMTDE----------SGK------SKGFGFVSFER 208
Query: 179 HIEAEHAMQELNG 191
H +A+ A+ E+NG
Sbjct: 209 HEDAQKAVDEMNG 221
Score = 120 (47.3 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFG FG +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 161 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 219
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 220 NGKELNGKQIYV 231
Score = 116 (45.9 bits), Expect = 2.7e-15, Sum P(2) = 2.7e-15
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 264 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 321
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 322 NGRIVATKPLYVALAQRK 339
Score = 116 (45.9 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 87 ELNGLKLQNKSIKVSYAR 104
+N ++ K +++ +++
Sbjct: 71 TMNFDVIKGKPVRIMWSQ 88
Score = 77 (32.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 27/92 (29%), Positives = 42/92 (45%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS+ + A+LYV L +T+ L F P G I++ R+ C M I
Sbjct: 3 PSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRV-CRDM--------------I 47
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+ S G +V F Q +AE A+ +N + +G
Sbjct: 48 TRRSLGYAYVNFQQPADAERALDTMNFDVIKG 79
Score = 71 (30.1 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 287 VLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVS 346
++W P +++ VV D KG+GFV + A AI+ +NG L DR + V
Sbjct: 84 IMWSQRDP--SLRKSGVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 139
Query: 347 -FKTHK 351
FK+ K
Sbjct: 140 RFKSRK 145
Score = 63 (27.2 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTI 193
SKG GFV F AE A++++NG +
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGML 130
>UNIPROTKB|B4QRJ0 [details] [associations]
symbol:shep "Protein alan shepard" species:7240 "Drosophila
simulans" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CM000363 OrthoDB:EOG4C8687 RefSeq:XP_002083716.1
ProteinModelPortal:B4QRJ0 EnsemblMetazoa:FBtr0213117 GeneID:6736860
KEGG:dsi:Dsim_GD13207 FlyBase:FBgn0184928 Uniprot:B4QRJ0
Length = 576
Score = 216 (81.1 bits), Expect = 2.8e-15, P = 2.8e-15
Identities = 66/206 (32%), Positives = 102/206 (49%)
Query: 9 NTTQSHRSTYQSDVNEQN------SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK 62
NT T Q+ N+Q +NL + + Q T ++L ++ + G + S K I DK
Sbjct: 208 NTNMGPNGTVQNQ-NQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDK 266
Query: 63 TTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPK 122
TT + YGFV++ + AE A+ GL Q K ++ A+ + NLY++ LP
Sbjct: 267 TTNKC--YGFVDFEQPAFAECAV---KGL--QGKGVQAQMAKQQEQ--DPTNLYIANLPP 317
Query: 123 HMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEA 182
H + DLE + YG ++++RIL D+ + SKG+GF R +
Sbjct: 318 HFKETDLEAMLSKYGQVVSTRILRDQQMN----------------SKGVGFARMESREKC 361
Query: 183 EHAMQELNG-TIPEGASEPITVKFAN 207
E +Q NG TIP GA +P+ VKFA+
Sbjct: 362 EQIIQMFNGNTIP-GAKDPLLVKFAD 386
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 195 (73.7 bits), Expect = 3.0e-15, P = 3.0e-15
Identities = 50/167 (29%), Positives = 85/167 (50%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S +L RDK T +SLGY +VNY + DA+RA+
Sbjct: 2 ASLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALE 61
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
+N + + +++ +++ PS N+++ L K + + L N+F +G I++ ++
Sbjct: 62 TMNFDVINGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
CD+ P KG GFV F + AE A+ LNG
Sbjct: 122 ACDEKG--------------P---KGYGFVHFQKQESAERAIDALNG 151
Score = 124 (48.7 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +T+ + L ++FS+ G + SCK+ D+ + GYGFV++ + E AERAI
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDA 148
Query: 88 LNGLKLQNKSIKVSYARPSSE 108
LNG+ L + I V + E
Sbjct: 149 LNGMFLNYRKIFVGRFKSHKE 169
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ +F FG + + KV D + K G+GFV +
Sbjct: 83 SLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQE 140
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI +LNG L R + V FK+HK
Sbjct: 141 SAERAIDALNGMFLNYRKIFVGRFKSHK 168
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 194 (73.4 bits), Expect = 4.0e-15, P = 4.0e-15
Identities = 50/167 (29%), Positives = 86/167 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S +L RDK T +SLGY +VNY + DA+RA+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
LN ++ + +++ +++ PS N+++ L K + + L N+F +G I++ ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
CD+ P KG GFV F + AE A+ +NG
Sbjct: 122 ACDEKG--------------P---KGYGFVHFQKQESAERAIDAMNG 151
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +T+ + L ++FS+ G + SCK+ D+ + GYGFV++ + E AERAI
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDA 148
Query: 88 LNGLKLQNKSIKVSYARPSSE 108
+NG+ L + I V + E
Sbjct: 149 MNGMFLNYRKIFVGRFKSHKE 169
Score = 111 (44.1 bits), Expect = 0.00033, P = 0.00033
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ +F FG + + KV D + K G+GFV +
Sbjct: 83 SLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQE 140
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI ++NG L R + V FK+HK
Sbjct: 141 SAERAIDAMNGMFLNYRKIFVGRFKSHK 168
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 166 (63.5 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 58/188 (30%), Positives = 96/188 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+N+ + + M E L+ LF G S K++ D++ +S G+GFV++ R EDA++A+
Sbjct: 63 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDES-GKSKGFGFVSFERHEDAQKAVD 118
Query: 87 ELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILC 146
E+NG +L K I V A+ + ++R + L + Q + + R G + + L
Sbjct: 119 EMNGKELNGKQIYVGRAQ---KKVERQ----TELKRKFEQMKQDRITRYQGVNLYVKNLD 171
Query: 147 DKMASENVRSFVS--GTPEIPQI------SKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
D + E +R S GT ++ SKG GFV F+ EA A+ E+NG I A+
Sbjct: 172 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV--AT 229
Query: 199 EPITVKFA 206
+P+ V A
Sbjct: 230 KPLYVALA 237
Score = 137 (53.3 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 45/133 (33%), Positives = 70/133 (52%)
Query: 67 SLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY--ARPSSEAI--KRA----NLYVS 118
S GYGFV++ E AERAI ++NG+ L ++ + V +R EA RA N+Y+
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIK 68
Query: 119 GLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQ 178
+ M E L++LF P ++ +++ D+ SG SKG GFV F +
Sbjct: 69 NFGEDMDDERLKDLFGP---ALSVKVMTDE----------SGK------SKGFGFVSFER 109
Query: 179 HIEAEHAMQELNG 191
H +A+ A+ E+NG
Sbjct: 110 HEDAQKAVDEMNG 122
Score = 116 (45.9 bits), Expect = 5.0e-15, Sum P(2) = 5.0e-15
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL +D L + F PFG + + KV+ + + KGFGFVC ++ +EA A+ +
Sbjct: 165 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEM 222
Query: 334 NGYALGDRLLQVSFKTHK 351
NG + + L V+ K
Sbjct: 223 NGRIVATKPLYVALAQRK 240
Score = 104 (41.7 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N + +D L LFGP +VKV+ D ++ K KGFGFV +++A A+ +
Sbjct: 65 VYIKNFGEDMDDERLKDLFGP---ALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 120
Query: 334 NGYALGDRLLQV 345
NG L + + V
Sbjct: 121 NGKELNGKQIYV 132
Score = 63 (27.2 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTI 193
SKG GFV F AE A++++NG +
Sbjct: 9 SKGYGFVHFETQEAAERAIEKMNGML 34
>UNIPROTKB|B3M3R5 [details] [associations]
symbol:shep "Protein alan shepard" species:7217 "Drosophila
ananassae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH902618 eggNOG:NOG320163 RefSeq:XP_001957552.1
ProteinModelPortal:B3M3R5 GeneID:6493340 KEGG:dan:Dana_GF10470
FlyBase:FBgn0087511 InParanoid:B3M3R5 OrthoDB:EOG4C8687
Uniprot:B3M3R5
Length = 597
Score = 214 (80.4 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 67/210 (31%), Positives = 104/210 (49%)
Query: 9 NTTQSHRSTYQSDVNEQN------SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK 62
NT T Q+ N+Q +NL + + Q T ++L ++ + G + S K I DK
Sbjct: 213 NTNMGPNGTAQNQ-NQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDK 271
Query: 63 TTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY---ARPSSEAIKR-ANLYVS 118
TT + YGFV++ + AE A+ L G +Q + KV RP+ + + NLY++
Sbjct: 272 TTNKC--YGFVDFEQPAFAECAVKGLQGKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIA 329
Query: 119 GLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQ 178
LP H + DLE + YG ++++RIL D+ + SKG+GF R
Sbjct: 330 NLPPHYKETDLEAMLSKYGQVVSTRILRDQQMN----------------SKGVGFARMES 373
Query: 179 HIEAEHAMQELNG-TIPEGASEPITVKFAN 207
+ E +Q NG TIP G +P+ VKFA+
Sbjct: 374 REKCEQIIQMFNGNTIP-GGKDPLLVKFAD 402
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 154 (59.3 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 48/162 (29%), Positives = 81/162 (50%)
Query: 38 MTQEELQHLFSSVGEVESCKLIR-DKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNK 96
+T+ LQ +F+S G +ESCKLIR DK++ YGFV+Y+ A AI+ LNG + +
Sbjct: 74 VTEILLQEIFASTGPIESCKLIRKDKSS-----YGFVHYFDRRCASMAIMTLNGRHIFGQ 128
Query: 97 SIKVSYARPSSE---AIKRANLYVSGLPKHMTQEDLENLFRPYGTIIT----SRILCDKM 149
+KV++A + + N++V L +T L + F + + + +R++ D+
Sbjct: 129 PMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQK 188
Query: 150 ASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
S+G GFV F +A+ A+ E+NG
Sbjct: 189 TGR---------------SRGFGFVSFRNQQDAQTAINEMNG 215
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 54/215 (25%), Positives = 95/215 (44%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVES----CKLIRDKTTAQSLGYG 71
+T Q + + N+ V + +T L FS+ S +++ D+ T +S G+G
Sbjct: 137 ATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFG 196
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYA---------RPSSEAIKRANLYVSGLP- 121
FV++ +DA+ AI E+NG + ++ I+ ++A + SS+ L +G
Sbjct: 197 FVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVEL-TNGSSE 255
Query: 122 --KHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVS-GTPEIPQI----SKGIGFV 174
+ ++ ED + T+ + + + R F + G I ++ KG GFV
Sbjct: 256 DGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDKGFGFV 315
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
R+N H EA A+Q N P S I + N P
Sbjct: 316 RYNTHDEAALAIQMGNAQ-PFLFSRQIRCSWGNKP 349
Score = 104 (41.7 bits), Expect = 5.3e-15, Sum P(2) = 5.3e-15
Identities = 33/84 (39%), Positives = 45/84 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGA--VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331
++V NL+PE L +LF GA ++ V+V RD KGFGFV +DEA AIQ
Sbjct: 275 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD------KGFGFVRYNTHDEAALAIQ 328
Query: 332 SLNGYA-LGDRLLQVSFKTHKPLP 354
N L R ++ S+ +KP P
Sbjct: 329 MGNAQPFLFSRQIRCSWG-NKPTP 351
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 154 (59.3 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 56/191 (29%), Positives = 91/191 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V +P+ + + +L+ LF G + +++D+ T G F+ Y + A +A L
Sbjct: 50 LFVGQIPRNLEESDLKPLFEEFGRIYELTVLKDRFTGMHKGCAFLTYCARDSALKAQSAL 109
Query: 89 NGLK-LQNKSIKVSYAR-----PS-SEAI--KRANLYVSGLPKHMTQEDLENLFRPYGTI 139
+ K L S R P+ S A+ + L+V L K +++D+ LF P+G I
Sbjct: 110 HEQKTLPGVSDGRELGRGLGWPPADSSALPPEDRKLFVGMLGKQQSEDDVRRLFEPFGQI 169
Query: 140 ITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG--TIPEGA 197
IL G P+ SKG FV+++ H EA+ A+ L+G T+P GA
Sbjct: 170 EECTIL-------------RG-PD--GASKGCAFVKYSSHAEAQAAISSLHGSQTMP-GA 212
Query: 198 SEPITVKFANS 208
S + VKFA++
Sbjct: 213 SSSLVVKFADT 223
Score = 94 (38.1 bits), Expect = 6.1e-08, Sum P(3) = 6.1e-08
Identities = 25/98 (25%), Positives = 48/98 (48%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L V + + ++++++ LF G++E C ++R A S G FV Y +A+ A
Sbjct: 141 EDRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGA-SKGCAFVKYSSHAEAQAA 199
Query: 85 IIELNGLKLQ---NKSIKVSYARPSSEAIKRANLYVSG 119
I L+G + + S+ V +A E R ++G
Sbjct: 200 ISSLHGSQTMPGASSSLVVKFADTDKERTLRRMHQMAG 237
Score = 73 (30.8 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 315 FGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 434 FGFVSFDNPTSAQAAIQAMNGFQIGMKRLKVQLKRPK 470
Score = 68 (29.0 bits), Expect = 5.5e-15, Sum P(3) = 5.5e-15
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 249 FAPLTADLLNNS-MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAV 298
+AP++ + ++P + G C +F+Y+L E D L Q+F PFG V
Sbjct: 386 YAPISQAFPQQAPIIPQQQREGPEGCNLFIYHLPQEFGDAELTQMFLPFGFV 437
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 165 (63.1 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 60/216 (27%), Positives = 93/216 (43%)
Query: 3 KHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDK 62
+H++ QS S +E N + + + Q M + L FS GEV S K+IR+K
Sbjct: 62 QHQQQQKMQQSPTQIQSS--SEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNK 119
Query: 63 TTAQSLGYGFVNYYRTEDAERAIIELNGLKLQN--KSIKVSYARPSSEAIKRA------N 114
T QS YGFV + AE+ + NG + N + ++++A S+ KRA +
Sbjct: 120 QTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFSTGE-KRAETGSDFS 178
Query: 115 LYVSGLPKHMTQEDLENLFRP-YGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
++V L +T L + F Y ++ ++++ D SKG GF
Sbjct: 179 IFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGH---------------SKGYGF 223
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
VRF E AM E+NG + I V P
Sbjct: 224 VRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKP 259
Score = 152 (58.6 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 50/197 (25%), Positives = 93/197 (47%)
Query: 28 NLIVNYVPQTMTQEELQHLFSS-VGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++ V + +T L+ F+S ++ K++ D T S GYGFV + + RA+
Sbjct: 178 SIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMT 237
Query: 87 ELNGLKLQNKSIKVSYARP---------SSEAIKRANLYVS-GLPKHMTQEDLENLFRPY 136
E+NG+ ++++++ A P SS+A+ + Y S G H +Q D ++
Sbjct: 238 EMNGVYCSSRAMRIGVATPKKPSAHEQYSSQAVILSGGYASNGAATHGSQSDGDSS---- 293
Query: 137 GTIITSRILCDKMASENVRSFVSGTPEIPQIS----KGIGFVRFNQHIEAEHAMQELNGT 192
T I L ++ E +R + E+ + KG GFV+F+ A+ A+Q+L+G
Sbjct: 294 NTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGA 353
Query: 193 IPEGASEPITVKFANSP 209
I + + + + SP
Sbjct: 354 II--GKQAVRLSWGRSP 368
Score = 91 (37.1 bits), Expect = 5.6e-15, Sum P(2) = 5.6e-15
Identities = 29/78 (37%), Positives = 40/78 (51%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
S IFV L E D L Q F FG V +VK+ P KG GFV ++ A A
Sbjct: 293 SNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI---PAG---KGCGFVQFSDRSSAQEA 346
Query: 330 IQSLNGYALGDRLLQVSF 347
IQ L+G +G + +++S+
Sbjct: 347 IQKLSGAIIGKQAVRLSW 364
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 188 (71.2 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 51/186 (27%), Positives = 92/186 (49%)
Query: 16 STYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN 74
ST S Q+ ++ V + +T E+++ F+ G + ++++D T +S GYGFV+
Sbjct: 94 STVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153
Query: 75 YYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFR 134
++ DAE AI ++ G L + I+ ++A A K + Y S K ++ +++ +
Sbjct: 154 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDEVVSQSS 210
Query: 135 PYGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELN 190
P + + + + +R S +I +I KG FVRF+ H A HA+ +N
Sbjct: 211 PNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVN 270
Query: 191 GTIPEG 196
GT EG
Sbjct: 271 GTTIEG 276
Score = 173 (66.0 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 55/184 (29%), Positives = 94/184 (51%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+E L V + + +T+ + LFS +G ++CK+I D TA + Y FV ++ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSE----------AIKRA----NLYVSGLPKHMTQE 127
A+ +NG K+ K +KV++A PSS+ + +R+ +++V L +T E
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
D++ F P+G I +R++ D MA+ SKG GFV F +AE+A+Q
Sbjct: 121 DIKAAFAPFGRISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQ 165
Query: 188 ELNG 191
++ G
Sbjct: 166 QMGG 169
Score = 149 (57.5 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAP 189
Score = 79 (32.9 bits), Expect = 6.5e-15, Sum P(2) = 6.5e-15
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335
+ ++ Q F PFG + ++V D KG+ FV ++++ A AI S+NG
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNG 271
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 144 (55.7 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 35/92 (38%), Positives = 50/92 (54%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
+L + G C +F+Y+L E D L Q+F PFG + + KV D T + K FGFV
Sbjct: 323 LLQQQQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVS 382
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
N A AIQ++NG+ +G + L+V K K
Sbjct: 383 FDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 414
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL +F G + S K+ D+ T QS +GFV++ A+ A
Sbjct: 333 EGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTA 392
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 393 IQAMNGFQIGMKRLKVQLKRP 413
Score = 114 (45.2 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
Identities = 44/145 (30%), Positives = 66/145 (45%)
Query: 69 GYGFVNYYRTEDA---ERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMT 125
G F+ Y + A + A+ E L + I+V A S R L+V L K +
Sbjct: 22 GCAFLTYCARDSAIKAQTALHEQKTLPGMARPIQVKPADSESRGGDR-KLFVGMLNKQQS 80
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
+ED+ LF+P+G I +L S G FV+F+ H EA+ A
Sbjct: 81 EEDVLRLFQPFGVIDECTVLRGPDGSSKA---------------GCAFVKFSSHTEAQAA 125
Query: 186 MQELNG--TIPEGASEPITVKFANS 208
+ L+G T+P GAS + VKFA++
Sbjct: 126 IHALHGSQTMP-GASSSLVVKFADT 149
Score = 84 (34.6 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 35/153 (22%), Positives = 61/153 (39%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + + ++E++ LF G ++ C ++R + G FV + +A+ AI L
Sbjct: 70 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKAGCAFVKFSSHTEAQAAIHAL 129
Query: 89 NGLKLQ---NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
+G + + S+ V +A E R + G +T L F PY + +
Sbjct: 130 HGSQTMPGASSSLVVKFADTDKERTLRRMQQMVGQLGILTPS-LTLPFSPYSAYAQALMQ 188
Query: 146 CDKMASENVRSFVS-GTPEIPQISKGIGFVRFN 177
S++S G P + IG V N
Sbjct: 189 QQTTVLSTSGSYLSPGVAFSPCHIQQIGAVSLN 221
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 192 (72.6 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 49/167 (29%), Positives = 86/167 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RDK T +SLGY +VNY + DA+RA+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
LN ++ + +++ +++ PS N+++ L K + + L N+F +G I++ ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
CD+ P KG GFV F + AE A+ +NG
Sbjct: 122 ACDEKG--------------P---KGYGFVHFQKQESAERAIDAMNG 151
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +T+ + L ++FS+ G + SCK+ D+ + GYGFV++ + E AERAI
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDA 148
Query: 88 LNGLKLQNKSIKVSYARPSSE 108
+NG+ L + I V + E
Sbjct: 149 MNGMFLNYRKIFVGRFKSHKE 169
Score = 111 (44.1 bits), Expect = 0.00033, P = 0.00033
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ +F FG + + KV D + K G+GFV +
Sbjct: 83 SLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQE 140
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI ++NG L R + V FK+HK
Sbjct: 141 SAERAIDAMNGMFLNYRKIFVGRFKSHK 168
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 192 (72.6 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 49/167 (29%), Positives = 86/167 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RDK T +SLGY +VNY + DA+RA+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
LN ++ + +++ +++ PS N+++ L K + + L N+F +G I++ ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
CD+ P KG GFV F + AE A+ +NG
Sbjct: 122 ACDEKG--------------P---KGYGFVHFQKQESAERAIDAMNG 151
Score = 122 (48.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +T+ + L ++FS+ G + SCK+ D+ + GYGFV++ + E AERAI
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDA 148
Query: 88 LNGLKLQNKSIKVSYARPSSE 108
+NG+ L + I V + E
Sbjct: 149 MNGMFLNYRKIFVGRFKSHKE 169
Score = 111 (44.1 bits), Expect = 0.00033, P = 0.00033
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ +F FG + + KV D + K G+GFV +
Sbjct: 83 SLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQE 140
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI ++NG L R + V FK+HK
Sbjct: 141 SAERAIDAMNGMFLNYRKIFVGRFKSHK 168
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 166 (63.5 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 45/114 (39%), Positives = 62/114 (54%)
Query: 242 HHSARFK--FAPL-TADLLNNSMLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGA 297
H++A + +AP+ TA S LP + G C +F+Y+L E D L Q F PFGA
Sbjct: 223 HYAAAYPSAYAPVSTAFPQQPSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGA 282
Query: 298 VQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
V + KV D T + K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 283 VVSAKVFVDRATNQSKCFGFVSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 336
Score = 124 (48.7 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 255 EGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSFDNPTSAQTA 314
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 315 IQAMNGFQIGMKRLKVQLKRP 335
Score = 84 (34.6 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 31/90 (34%), Positives = 45/90 (50%)
Query: 120 LPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQH 179
L K +ED+ LF+P+G I +L RS GT SKG FV+F
Sbjct: 2 LGKQQGEEDVRRLFQPFGHIEECTVL---------RS-PDGT------SKGCAFVKFGSQ 45
Query: 180 IEAEHAMQELNGT-IPEGASEPITVKFANS 208
EA+ A++ L+G+ GAS + VK A++
Sbjct: 46 GEAQAAIRGLHGSRTMAGASSSLVVKLADT 75
Score = 81 (33.6 bits), Expect = 0.00096, Sum P(2) = 0.00096
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L F P+G ++++++ D+ ++
Sbjct: 252 EGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQ--------------- 296
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 297 SKCFGFVSFDNPTSAQTAIQAMNG 320
Score = 73 (30.8 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 40 QEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQ---NK 96
+E+++ LF G +E C ++R S G FV + +A+ AI L+G + +
Sbjct: 8 EEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASS 66
Query: 97 SIKVSYARPSSE-AIKR 112
S+ V A E A++R
Sbjct: 67 SLVVKLADTDRERALRR 83
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 198 (74.8 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 53/186 (28%), Positives = 92/186 (49%)
Query: 16 STYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN 74
ST S Q+ ++ V + +T E+++ F+ G + ++++D T +S GYGFV+
Sbjct: 94 STVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153
Query: 75 YYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFR 134
++ DAE AI ++ G L + I+ ++A A K + Y S K ++ +++ N
Sbjct: 154 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDEVVNQSS 210
Query: 135 PYGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELN 190
P + + + + +R S +I +I KG FVRFN H A HA+ +N
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVN 270
Query: 191 GTIPEG 196
GT EG
Sbjct: 271 GTTIEG 276
Score = 173 (66.0 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 55/184 (29%), Positives = 94/184 (51%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+E L V + + +T+ + LFS +G ++CK+I D TA + Y FV ++ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSE----------AIKRA----NLYVSGLPKHMTQE 127
A+ +NG K+ K +KV++A PSS+ + +R+ +++V L +T E
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
D++ F P+G I +R++ D MA+ SKG GFV F +AE+A+Q
Sbjct: 121 DIKAAFAPFGRISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQ 165
Query: 188 ELNG 191
++ G
Sbjct: 166 QMGG 169
Score = 149 (57.5 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAP 189
Score = 78 (32.5 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335
+ ++ Q F PFG + ++V D KG+ FV +++ A AI S+NG
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 198 (74.8 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 53/186 (28%), Positives = 92/186 (49%)
Query: 16 STYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN 74
ST S Q+ ++ V + +T E+++ F+ G + ++++D T +S GYGFV+
Sbjct: 94 STVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153
Query: 75 YYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFR 134
++ DAE AI ++ G L + I+ ++A A K + Y S K ++ +++ N
Sbjct: 154 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDEVVNQSS 210
Query: 135 PYGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELN 190
P + + + + +R S +I +I KG FVRFN H A HA+ +N
Sbjct: 211 PSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVN 270
Query: 191 GTIPEG 196
GT EG
Sbjct: 271 GTTIEG 276
Score = 173 (66.0 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 55/184 (29%), Positives = 94/184 (51%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+E L V + + +T+ + LFS +G ++CK+I D TA + Y FV ++ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSE----------AIKRA----NLYVSGLPKHMTQE 127
A+ +NG K+ K +KV++A PSS+ + +R+ +++V L +T E
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
D++ F P+G I +R++ D MA+ SKG GFV F +AE+A+Q
Sbjct: 121 DIKAAFAPFGRISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQ 165
Query: 188 ELNG 191
++ G
Sbjct: 166 QMGG 169
Score = 149 (57.5 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAP 189
Score = 78 (32.5 bits), Expect = 8.2e-15, Sum P(2) = 8.2e-15
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335
+ ++ Q F PFG + ++V D KG+ FV +++ A AI S+NG
Sbjct: 227 EQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNG 271
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 191 (72.3 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 49/167 (29%), Positives = 86/167 (51%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
++L V + +T+ L FS G + S ++ RDK T +SLGY +VNY + DA+RA+
Sbjct: 2 ASLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALE 61
Query: 87 ELNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
LN ++ + +++ +++ PS N+++ L K + + L N+F +G I++ ++
Sbjct: 62 TLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKV 121
Query: 145 LCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
CD+ P KG GFV F + AE A+ +NG
Sbjct: 122 ACDEKG--------------P---KGYGFVHFQKQESAERAIDVMNG 151
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/81 (33%), Positives = 47/81 (58%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ + + +T+ + L ++FS+ G + SCK+ D+ + GYGFV++ + E AERAI
Sbjct: 91 NVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQESAERAIDV 148
Query: 88 LNGLKLQNKSIKVSYARPSSE 108
+NG+ L + I V + E
Sbjct: 149 MNGMFLNYRKIFVGRFKSHKE 169
Score = 108 (43.1 bits), Expect = 0.00076, P = 0.00076
Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 266 SLHGSG-WCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
SL SG +F+ NL ++ L+ +F FG + + KV D + K G+GFV +
Sbjct: 83 SLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPK--GYGFVHFQKQE 140
Query: 325 EAVFAIQSLNGYALGDRLLQVS-FKTHK 351
A AI +NG L R + V FK+HK
Sbjct: 141 SAERAIDVMNGMFLNYRKIFVGRFKSHK 168
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 164 (62.8 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 55/199 (27%), Positives = 91/199 (45%)
Query: 11 TQSHRSTYQSD-VNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
+ S ++ Q D + L + +P + T E L FS ++ ++ D T QS G
Sbjct: 20 SSSSKNNVQEDGATQPRRELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKG 79
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS----SEAIKRANLYVSGLPKHMT 125
YGFV + EDA+ A+ ELNG + K IKV YA+P E + ++ L +
Sbjct: 80 YGFVTFADVEDAKAALEELNGSTFEGKKIKVEYAQPRHRVVDETVGKSVPSAEALERKKQ 139
Query: 126 QEDLENLFRPYGTIITS---RILCDKMASENVRSF-----VSGTPEIPQISKGIGFVRFN 177
+E + +P I+ + I + + + RSF V+ + Q++ G GFV
Sbjct: 140 REQQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTLPKKGSQLA-GFGFVVLR 198
Query: 178 QHIEAEHAMQELNGTIPEG 196
AE A++ +NG +G
Sbjct: 199 GKKNAEKALEAVNGKEVDG 217
Score = 96 (38.9 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331
IF+ NL +D L+ F FG ++ ++V DP+T + +G GFVC + A +Q
Sbjct: 311 IFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCFWKPEHAQACVQ 368
Score = 95 (38.5 bits), Expect = 8.1e-07, Sum P(2) = 8.1e-07
Identities = 27/86 (31%), Positives = 47/86 (54%)
Query: 19 QSDVNEQNSNLIVNYVPQTM-TQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYR 77
Q + Q LIV +P ++ T E+L F S G+V+ L K +Q G+GFV
Sbjct: 142 QQKADTQPPKLIVRNLPWSIKTPEDLAAHFRSFGKVKYVTL--PKKGSQLAGFGFVVLRG 199
Query: 78 TEDAERAIIELNGLKLQNKSIKVSYA 103
++AE+A+ +NG ++ +++ V +A
Sbjct: 200 KKNAEKALEAVNGKEVDGRTLAVDWA 225
Score = 56 (24.8 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 302 KVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYAL 338
KV D + +G+GF+ + A+ ++ LNG+A+
Sbjct: 573 KVSEDSGAGRSRGYGFIEYYTHRHALMGLRWLNGHAI 609
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 186 (70.5 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 50/186 (26%), Positives = 92/186 (49%)
Query: 16 STYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN 74
ST S Q+ ++ V + +T E+++ F+ G + ++++D T +S GYGFV+
Sbjct: 90 STVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 149
Query: 75 YYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFR 134
++ DAE AI ++ G L + I+ ++A A K + Y S K ++ +++ +
Sbjct: 150 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK--STYESNT-KQLSYDEVVSQSS 206
Query: 135 PYGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELN 190
P + + + + +R S +I +I KG F+RF+ H A HA+ +N
Sbjct: 207 PGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFIRFSSHESAAHAIVSVN 266
Query: 191 GTIPEG 196
GT EG
Sbjct: 267 GTTIEG 272
Score = 169 (64.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 54/178 (30%), Positives = 92/178 (51%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + + +T+ + LFS +G ++CK+I D TA + Y FV ++ A A+ +
Sbjct: 5 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 62
Query: 89 NGLKLQNKSIKVSYAR-PSSE----------AIKRA----NLYVSGLPKHMTQEDLENLF 133
NG K+ K +KV++A PSS+ + +R+ +++V L +T ED++ F
Sbjct: 63 NGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAF 122
Query: 134 RPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
P+G I +R++ D MA+ SKG GFV F +AE+A+Q++ G
Sbjct: 123 APFGRISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQQMGG 165
Score = 149 (57.5 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 104 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 163
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 164 GGQWLGGRQIRTNWATRKPPAP 185
Score = 78 (32.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNG 335
+ ++ Q F PFG + ++V D KG+ F+ ++++ A AI S+NG
Sbjct: 223 EQLMRQTFSPFGQIMEIRVFPD------KGYSFIRFSSHESAAHAIVSVNG 267
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 162 (62.1 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 49/175 (28%), Positives = 85/175 (48%)
Query: 24 EQNSN-LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
E N L V + +T++ L+ +F + G V++ K+I DK A+ YGFV Y A+
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKN-AKGYNYGFVEYDDPGAAD 139
Query: 83 RAIIELNGLKLQNKSIKVSYA-RPSSEAIKR--AN---LYVSGLPKHMTQEDLENLFRPY 136
RA+ LNG ++ I+V++A + ++ A K +N ++V L + E L F +
Sbjct: 140 RAMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVF 199
Query: 137 GTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
G++ +R++ D S+G GFV F +AE A+ ++G
Sbjct: 200 GSVSEARVMWDMKTGR---------------SRGYGFVAFRDRSDAEKALSSMDG 239
Score = 136 (52.9 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 29/83 (34%), Positives = 48/83 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV +L+ E D VL Q F FG+V +V+ D +T + +G+GFV + +A A+ S+
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 334 NGYALGDRLLQVSFKTHKPLPPV 356
+G LG R ++ ++ K P +
Sbjct: 238 DGEWLGSRAIRCNWANQKGQPSI 260
Score = 110 (43.8 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 20 SDVNEQNSN---LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYY 76
S E SN + V + + E L FS G V +++ D T +S GYGFV +
Sbjct: 166 SATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFR 225
Query: 77 RTEDAERAIIELNGLKLQNKSIKVSYARPSSE 108
DAE+A+ ++G L +++I+ ++A +
Sbjct: 226 DRSDAEKALSSMDGEWLGSRAIRCNWANQKGQ 257
Score = 90 (36.7 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 27/77 (35%), Positives = 38/77 (49%)
Query: 275 FVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLN 334
+V NL P T N + LF FG V + D +GF F+ M +++ A AI LN
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQAD------RGFAFIKMDSHENAAQAICGLN 358
Query: 335 GYALGDRLLQVSFKTHK 351
GY + R L+ S+ K
Sbjct: 359 GYNVNGRPLKCSWGKDK 375
Score = 79 (32.9 bits), Expect = 3.8e-10, Sum P(2) = 3.8e-10
Identities = 28/88 (31%), Positives = 41/88 (46%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
R + E KRA LYV GL +T++ L +F G + +I+ DK N + +
Sbjct: 77 RTAPEPNKRA-LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDK----NAKGY------ 125
Query: 164 IPQISKGIGFVRFNQHIEAEHAMQELNG 191
GFV ++ A+ AMQ LNG
Sbjct: 126 ------NYGFVEYDDPGAADRAMQTLNG 147
Score = 57 (25.1 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 116 YVSGLPKHMTQEDLENLFRPYGTIITSRILCDK 148
YV L + T D+ LF+ +G ++ SR D+
Sbjct: 305 YVGNLTPYTTANDVVPLFQNFGYVVESRFQADR 337
Score = 48 (22.0 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 166 QISKGIGFVRFNQHIEAEHAMQELNG 191
Q +G F++ + H A A+ LNG
Sbjct: 334 QADRGFAFIKMDSHENAAQAICGLNG 359
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 151 (58.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 37/92 (40%), Positives = 51/92 (55%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
M+P + G C +F+Y+L E D L Q+F PFG V + KV D T + K FGFV
Sbjct: 264 MIPQQQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVS 323
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
N A AIQ++NG+ +G + L+V K K
Sbjct: 324 FDNPASAQAAIQAMNGFQIGMKRLKVQLKRPK 355
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL + ++PQ EL +F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 274 EGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQAA 333
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 334 IQAMNGFQIGMKRLKVQLKRP 354
Score = 97 (39.2 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L+V L K +++D+ LF +G I IL R P+ SKG FV
Sbjct: 11 LFVGMLNKQQSEDDVRRLFEAFGNIEECTIL---------RG-----PD--GNSKGCAFV 54
Query: 175 RFNQHIEAEHAMQELNG--TIPEGASEPITVKFANS 208
+++ H EA+ A+ L+G T+P GAS + VKFA++
Sbjct: 55 KYSSHAEAQAAINALHGSQTMP-GASSSLVVKFADT 89
Score = 92 (37.4 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 24/98 (24%), Positives = 47/98 (47%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L V + + ++++++ LF + G +E C ++R S G FV Y +A+ A
Sbjct: 7 EDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAA 65
Query: 85 IIELNGLKLQ---NKSIKVSYARPSSEAIKRANLYVSG 119
I L+G + + S+ V +A E R ++G
Sbjct: 66 INALHGSQTMPGASSSLVVKFADTDKERTMRRMQQMAG 103
Score = 89 (36.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL++ LP+ +L +F P+G +I+S++ D+ ++
Sbjct: 271 EGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQ--------------- 315
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 316 SKCFGFVSFDNPASAQAAIQAMNG 339
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 190 (71.9 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 45/139 (32%), Positives = 74/139 (53%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSL 68
N++ ++ S S +NL + +P T ++L L G++ S K I DK T Q
Sbjct: 43 NSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCK 102
Query: 69 GYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQED 128
GYGFV++ A++A+ L +Q + K P+ NLY+S LP M +++
Sbjct: 103 GYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPISMDEQE 155
Query: 129 LENLFRPYGTIITSRILCD 147
LEN+ +P+G +I++RIL D
Sbjct: 156 LENMLKPFGHVISTRILRD 174
Score = 126 (49.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 35/100 (35%), Positives = 53/100 (53%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
NLY+S LP M +++LEN+ +P+G +I++RIL D +G +S+G+GF
Sbjct: 141 NLYISNLPISMDEQELENMLKPFGHVISTRILRD----------ANG------VSRGVGF 184
Query: 174 VRFNQHIEAEHAMQELNGTI---PEGA---SEPITVKFAN 207
R + E +Q NG P G SEP+ KFA+
Sbjct: 185 ARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFAD 224
Score = 113 (44.8 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 30/96 (31%), Positives = 50/96 (52%)
Query: 95 NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASE-N 153
N S S S E + + NLY+ GLP T +DL L +PYG I++++ + DK ++
Sbjct: 43 NSSSNNSSNNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCK 102
Query: 154 VRSFVS-GTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
FV +P Q K + ++ N ++A+ A Q+
Sbjct: 103 GYGFVDFDSPAAAQ--KAVASLKANG-VQAQMAKQQ 135
Score = 76 (31.8 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL ++ L + PFG V + +++RD +G GF M + ++ IQ
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVS-RGVGFARMESTEKCEVVIQHF 200
Query: 334 NG 335
NG
Sbjct: 201 NG 202
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 206 (77.6 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 64/197 (32%), Positives = 100/197 (50%)
Query: 20 SDVNEQNS--NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYR 77
SD + +N+ L + VP+T T+++++ LF G+V LI+D+ T + G FV Y
Sbjct: 113 SDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYAT 172
Query: 78 TEDAERAIIEL-NGLKLQNKS--IKVSYARPSSE---AIKRANLYVSGLPKHMTQEDLEN 131
+E+AERAI L N L I+V YA E AI+ L+V+ L K T +++E
Sbjct: 173 SEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEH-KLFVASLNKQATAKEIEE 231
Query: 132 LFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+F PYG + I+ D M S+G GFV+F+ A AM L+G
Sbjct: 232 IFAPYGHVEDVYIMKDGMRQ----------------SRGCGFVKFSSREPALAAMSALSG 275
Query: 192 T-IPEGASEPITVKFAN 207
+ G +P+ ++FA+
Sbjct: 276 NYVMRGCEQPLIIRFAD 292
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 206 (77.6 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 64/197 (32%), Positives = 100/197 (50%)
Query: 20 SDVNEQNS--NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYR 77
SD + +N+ L + VP+T T+++++ LF G+V LI+D+ T + G FV Y
Sbjct: 113 SDHDNRNNYVKLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYAT 172
Query: 78 TEDAERAIIEL-NGLKLQNKS--IKVSYARPSSE---AIKRANLYVSGLPKHMTQEDLEN 131
+E+AERAI L N L I+V YA E AI+ L+V+ L K T +++E
Sbjct: 173 SEEAERAIRALHNQYTLPGAMGPIQVRYADGERERHGAIEH-KLFVASLNKQATAKEIEE 231
Query: 132 LFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+F PYG + I+ D M S+G GFV+F+ A AM L+G
Sbjct: 232 IFAPYGHVEDVYIMKDGMRQ----------------SRGCGFVKFSSREPALAAMSALSG 275
Query: 192 T-IPEGASEPITVKFAN 207
+ G +P+ ++FA+
Sbjct: 276 NYVMRGCEQPLIIRFAD 292
>DICTYBASE|DDB_G0270436 [details] [associations]
symbol:DDB_G0270436 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270436 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_646802.1
ProteinModelPortal:Q55BM9 EnsemblProtists:DDB0191059 GeneID:8617775
KEGG:ddi:DDB_G0270436 InParanoid:Q55BM9 OMA:DICNVFV
ProtClustDB:CLSZ2846937 Uniprot:Q55BM9
Length = 521
Score = 133 (51.9 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYR 77
++ D N+ V Y+P +++EL LF GE+ + K++ + T SLGYGFV +
Sbjct: 12 FELDSEVDICNVFVKYLPCNFSEKELYDLFEQFGEIVNTKVMVNIKTGNSLGYGFVRFLN 71
Query: 78 TEDAERAIIELNGLKLQNKSIKVSYARPSS 107
E+A AI +N ++ K++ ++PS+
Sbjct: 72 PENACEAIKNMNRYQVGYKTLLCKLSKPSN 101
Score = 84 (34.6 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 21/84 (25%), Positives = 45/84 (53%)
Query: 265 KSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
K+++ + I V E + L Q+F +G ++++ + +P + K K F + N +
Sbjct: 436 KTINNNSVSILVCTFKGSLEYSNLIQIFSKYGDLKSINININPNSNKTKCF--ISFNNAE 493
Query: 325 EAVFAIQSLNGYAL-GDRLLQVSF 347
A+ A Q+L+G + G++ ++V F
Sbjct: 494 NAILAQQNLDGQKIQGNQFIRVKF 517
Score = 83 (34.3 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 23/75 (30%), Positives = 38/75 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L+P D +L F FG V +V+ D + K K G + +N + A+QS+
Sbjct: 145 LYVRVLSPTITDAILNSTFSQFGEVIEAQVLIDASSGKSKRAGVIKFSNIHYSTNALQSM 204
Query: 334 NG-YALGDRLLQVSF 347
+G LG+ L V +
Sbjct: 205 SGSLILGETPLVVKY 219
Score = 70 (29.7 bits), Expect = 1.3e-13, Sum P(3) = 1.3e-13
Identities = 27/92 (29%), Positives = 47/92 (51%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
LYV L +T L + F +G +I +++L D AS SG SK G +
Sbjct: 145 LYVRVLSPTITDAILNSTFSQFGEVIEAQVLID--AS-------SGK------SKRAGVI 189
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+F+ + +A+Q ++G++ G + P+ VK+A
Sbjct: 190 KFSNIHYSTNALQSMSGSLILGET-PLVVKYA 220
Score = 45 (20.9 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKF 205
P +K F+ FN A A Q L+G +G ++ I VKF
Sbjct: 478 PNSNKTKCFISFNNAENAILAQQNLDGQKIQG-NQFIRVKF 517
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 145 (56.1 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 36/92 (39%), Positives = 50/92 (54%)
Query: 261 MLPPKSLHGSGWC-IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVC 319
M+P + G C + +Y+L E D L Q+F PFG V + KV D T + K FGFV
Sbjct: 258 MIPQQQREGPEGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVS 317
Query: 320 MTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
N A AIQ++NG+ +G + L+V K K
Sbjct: 318 FDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 349
Score = 131 (51.2 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 28/81 (34%), Positives = 44/81 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ NL++ ++PQ EL +F G V S K+ D+ T QS +GFV++ A+ A
Sbjct: 268 EGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSFDNPASAQTA 327
Query: 85 IIELNGLKLQNKSIKVSYARP 105
I +NG ++ K +KV RP
Sbjct: 328 IQAMNGFQIGMKRLKVQLKRP 348
Score = 97 (39.2 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
Identities = 33/96 (34%), Positives = 50/96 (52%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L+V L K +++D+ LF +G I IL R P+ SKG FV
Sbjct: 3 LFVGMLNKQQSEDDVRRLFEAFGNIEECTIL---------RG-----PD--GNSKGCAFV 46
Query: 175 RFNQHIEAEHAMQELNG--TIPEGASEPITVKFANS 208
+++ H EA+ A+ L+G T+P GAS + VKFA++
Sbjct: 47 KYSSHAEAQAAINALHGSQTMP-GASSSLVVKFADT 81
Score = 90 (36.7 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 24/94 (25%), Positives = 45/94 (47%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + + ++++++ LF + G +E C ++R S G FV Y +A+ AI L
Sbjct: 3 LFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINAL 61
Query: 89 NGLKLQ---NKSIKVSYARPSSEAIKRANLYVSG 119
+G + + S+ V +A E R ++G
Sbjct: 62 HGSQTMPGASSSLVVKFADTDKERTMRRMQQMAG 95
Score = 85 (35.0 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E + NL + LP+ +L +F P+G +I+S++ D+ ++
Sbjct: 265 EGPEGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQ--------------- 309
Query: 168 SKGIGFVRFNQHIEAEHAMQELNG 191
SK GFV F+ A+ A+Q +NG
Sbjct: 310 SKCFGFVSFDNPASAQTAIQAMNG 333
>UNIPROTKB|E1BPT6 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:DAAA02053512 EMBL:DAAA02053513 EMBL:DAAA02053514
EMBL:DAAA02053515 EMBL:DAAA02053516 EMBL:DAAA02053517
EMBL:DAAA02053518 EMBL:DAAA02053519 EMBL:DAAA02053520
EMBL:DAAA02053521 EMBL:DAAA02053522 EMBL:DAAA02053523
IPI:IPI00711139 Ensembl:ENSBTAT00000061510 Uniprot:E1BPT6
Length = 437
Score = 198 (74.8 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 46/139 (33%), Positives = 75/139 (53%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSL 68
N++ +H S+ S +NL + +P T ++L L G++ S K I DK T Q
Sbjct: 43 NSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCK 102
Query: 69 GYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQED 128
GYGFV++ A++A+ L +Q + K P+ NLY+S LP M +++
Sbjct: 103 GYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPISMDEQE 155
Query: 129 LENLFRPYGTIITSRILCD 147
LEN+ +P+G +I++RIL D
Sbjct: 156 LENMLKPFGHVISTRILRD 174
Score = 126 (49.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 35/100 (35%), Positives = 53/100 (53%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
NLY+S LP M +++LEN+ +P+G +I++RIL D +G +S+G+GF
Sbjct: 141 NLYISNLPISMDEQELENMLKPFGHVISTRILRD----------ANG------VSRGVGF 184
Query: 174 VRFNQHIEAEHAMQELNGTI---PEGA---SEPITVKFAN 207
R + E +Q NG P G SEP+ KFA+
Sbjct: 185 ARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFAD 224
Score = 116 (45.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 95 NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASE-N 153
N S S + S E + + NLY+ GLP T +DL L +PYG I++++ + DK ++
Sbjct: 43 NSSSNHSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCK 102
Query: 154 VRSFVS-GTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
FV +P Q K + ++ N ++A+ A Q+
Sbjct: 103 GYGFVDFDSPAAAQ--KAVASLKANG-VQAQMAKQQ 135
Score = 76 (31.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL ++ L + PFG V + +++RD +G GF M + ++ IQ
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVS-RGVGFARMESTEKCEVVIQHF 200
Query: 334 NG 335
NG
Sbjct: 201 NG 202
>UNIPROTKB|F1SLB3 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CU633731
EMBL:CU655980 Ensembl:ENSSSCT00000000434 OMA:GHQMAPP
ArrayExpress:F1SLB3 Uniprot:F1SLB3
Length = 281
Score = 190 (71.9 bits), Expect = 2.6e-13, P = 2.6e-13
Identities = 49/141 (34%), Positives = 79/141 (56%)
Query: 9 NTTQSHRSTYQSDVNEQNS--NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
N+T + S+ S+VN+Q S NL + + T ++L L S G++ S K I DKTT +
Sbjct: 8 NSTPN--SSNGSNVNDQLSKTNLYIRGLQPGTTDQDLVKLCQSYGKIVSTKAILDKTTNK 65
Query: 67 SLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQ 126
GYGFV++ A++A+ L +Q + K P+ NLY+S LP M +
Sbjct: 66 CKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQQEQDPT-------NLYISNLPLSMDE 118
Query: 127 EDLENLFRPYGTIITSRILCD 147
++LE + +P+G +I++RIL D
Sbjct: 119 QELEGMLKPFGQVISTRILRD 139
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 34/100 (34%), Positives = 51/100 (51%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
NLY+S LP M +++LE + +P+G +I++RIL D SGT S+G+GF
Sbjct: 106 NLYISNLPLSMDEQELEGMLKPFGQVISTRILRD----------TSGT------SRGVGF 149
Query: 174 VRFNQHIEAEHAMQELNGTI---PEGA---SEPITVKFAN 207
R + E + NG P G S+P+ KFA+
Sbjct: 150 ARMESTEKCEAIITHFNGKYIKTPPGVPAPSDPLLCKFAD 189
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 174 (66.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 66/207 (31%), Positives = 97/207 (46%)
Query: 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT 78
Q D + +N+ V + +T T +L+ LF GE+ S +++D +S +GFVN+ +
Sbjct: 111 QWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKA 169
Query: 79 EDAERAIIELNGLKLQNKSIKVSYARPSS------------EAI-------KRANLYVSG 119
E A AI ++NG+ + K + V A+ + E I K NLYV
Sbjct: 170 EAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKN 229
Query: 120 LPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQH 179
L + LE LF +GTI TS C M N G ISKG+GFV F+
Sbjct: 230 LDDSVDNTKLEELFSEFGTI-TS---CKVMVHSN------G------ISKGVGFVEFSTS 273
Query: 180 IEAEHAMQELNGTIPEGASEPITVKFA 206
EA AM ++NG + ++PI V A
Sbjct: 274 EEASKAMLKMNGKMV--GNKPIYVSLA 298
Score = 148 (57.2 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 47/171 (27%), Positives = 80/171 (46%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
N+ V + +++ ++L +FS+ G+V SCK+ RD + S GYGFV +Y A
Sbjct: 32 NVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARD-ASGVSKGYGFVQFYSDLSVYTACNF 90
Query: 88 LNGLKLQNKSIKVS--YARPSSEAIKR-ANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
NG ++N+ I V +R + + N+YV L + T DL+ LF +G I ++ +
Sbjct: 91 HNGTLIRNQHIHVCPFVSRGQWDKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 145 LCDKMASENVRSFVS---GTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192
+ D FV+ + I K G V + + A ++ N T
Sbjct: 151 MKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRT 201
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
NL V + ++ +L+ LFS G + SCK++ + S G GFV + +E+A +A+++
Sbjct: 224 NLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVH-SNGISKGVGFVEFSTSEEASKAMLK 282
Query: 88 LNGLKLQNKSIKVSYAR 104
+NG + NK I VS A+
Sbjct: 283 MNGKMVGNKPIYVSLAQ 299
Score = 106 (42.4 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D L +LFG FG + + V++D + K + FGFV + AV AI+ +
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEG-KSRRFGFVNFEKAEAAVTAIEKM 179
Query: 334 NGYALGDRLLQV 345
NG + ++ L V
Sbjct: 180 NGVVVDEKELHV 191
Score = 93 (37.8 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
Identities = 24/76 (31%), Positives = 40/76 (52%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G ++V NL ++ L +LF FG + + KV+ KG GFV + +EA A+
Sbjct: 222 GMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGIS-KGVGFVEFSTSEEASKAM 280
Query: 331 QSLNGYALGDRLLQVS 346
+NG +G++ + VS
Sbjct: 281 LKMNGKMVGNKPIYVS 296
Score = 90 (36.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 28/108 (25%), Positives = 52/108 (48%)
Query: 88 LNGLKLQNKSIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
LN KL+ K +++ ++ PS+ R N++V L + + + L ++F +G +++ ++
Sbjct: 4 LNYCKLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVA 63
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTI 193
D SG +SKG GFV+F + A NGT+
Sbjct: 64 RD----------ASG------VSKGYGFVQFYSDLSVYTACNFHNGTL 95
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 147 (56.8 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 290 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 349
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 350 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 391
Score = 123 (48.4 bits), Expect = 7.6e-05, P = 7.6e-05
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 310 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 369
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 370 IQAMNGFQIGMKRLKVQLKRSKNDS 394
Score = 103 (41.3 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G +I++++ DK +
Sbjct: 300 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN--------- 350
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 351 ------LSKCFGFVSYDNPVSAQAAIQAMNG 375
Score = 93 (37.8 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166
S A++ L++ + K + D+ +F P+G I RIL G P+
Sbjct: 15 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRIL-------------RG-PD--G 58
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVKFANS 208
+S+G FV F+ A++A++ ++ + EG S PI VKFA++
Sbjct: 59 LSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADT 101
Score = 71 (30.1 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 19 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 77
Query: 85 I 85
I
Sbjct: 78 I 78
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 150 (57.9 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 48/174 (27%), Positives = 83/174 (47%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
+L + + Q M + + +F+ GE S K+IR+K T QS GYGF+ + AER +
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 88 LNGLKLQN--KSIKVSYARPSSEAIKRAN-------LYVSGLPKHMTQEDLENLFRP-YG 137
NG + + ++ ++++A+ + KR ++V L +T L + F+ YG
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGE-KRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYG 179
Query: 138 TIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
++ ++++ D+ SKG GFVRF E AM E+NG
Sbjct: 180 SVKGAKVVLDRTTGR---------------SKGYGFVRFADENEQMRAMTEMNG 218
Score = 142 (55.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 48/186 (25%), Positives = 81/186 (43%)
Query: 29 LIVNYVPQTMTQEELQHLFSSV-GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
+ V + +T L F +V G V+ K++ D+TT +S GYGFV + + RA+ E
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 88 LNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCD 147
+NG + +++ A + + +Y + + D P T I L
Sbjct: 216 MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDND------PNNTTIFVGGLDA 269
Query: 148 KMASENVRSFVSGTPEIPQIS----KGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITV 203
+ + ++S E+ + K GFV++ AEHA+ LNGT G S I +
Sbjct: 270 NVTDDELKSIFGQFGELLHVKIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQS--IRL 327
Query: 204 KFANSP 209
+ SP
Sbjct: 328 SWGRSP 333
Score = 117 (46.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/91 (34%), Positives = 48/91 (52%)
Query: 269 GSGWCIFVYNLAPETEDNVLWQLF-GPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
G IFV +LAPE D +L F +G+V+ KVV D T + KG+GFV + +E +
Sbjct: 151 GPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQM 210
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK---PLPP 355
A+ +NG R +++ +K P+ P
Sbjct: 211 RAMTEMNGQYCSTRPMRIGPAANKNALPMQP 241
Score = 89 (36.4 bits), Expect = 3.7e-13, Sum P(2) = 3.7e-13
Identities = 26/74 (35%), Positives = 38/74 (51%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV L D+ L +FG FG + +VK+ P +C GFV N A A+ L
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKI---PPGKRC---GFVQYANKASAEHALSVL 315
Query: 334 NGYALGDRLLQVSF 347
NG LG + +++S+
Sbjct: 316 NGTQLGGQSIRLSW 329
Score = 62 (26.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 23/114 (20%), Positives = 50/114 (43%)
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRIL 145
++L+ L + P S + ++ L++ L + M + + ++F G +++++
Sbjct: 34 MQLSAAPLGQHQYGIGSQNPGSASDVKS-LWIGDLQQWMDENYIMSVFAQSGEATSAKVI 92
Query: 146 CDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE 199
+K+ + S+G GF+ F H AE +Q NG P ++E
Sbjct: 93 RNKLTGQ---------------SEGYGFIEFVSHSVAERVLQTYNGA-PMPSTE 130
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 147 (56.8 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 40/102 (39%), Positives = 55/102 (53%)
Query: 256 LLNNSMLPPKSLHGS------GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQT 309
L + S+L +S GS G +F+Y+L E D + Q+F PFG V + KV D QT
Sbjct: 296 LYSQSLLQQQSAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQT 355
Query: 310 YKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
K FGFV N A AIQ++NG+ +G + L+V K K
Sbjct: 356 NLSKCFGFVSYDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSK 397
Score = 123 (48.4 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ +NL + ++PQ +++ +F G V S K+ DK T S +GFV+Y A+ A
Sbjct: 316 EGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 375
Query: 85 IIELNGLKLQNKSIKVSYARPSSEA 109
I +NG ++ K +KV R +++
Sbjct: 376 IQAMNGFQIGMKRLKVQLKRSKNDS 400
Score = 103 (41.3 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 25/91 (27%), Positives = 46/91 (50%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S A E + ANL++ LP+ +D+ +F P+G +I++++ DK +
Sbjct: 306 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTN--------- 356
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNG 191
+SK GFV ++ + A+ A+Q +NG
Sbjct: 357 ------LSKCFGFVSYDNPVSAQAAIQAMNG 381
Score = 93 (37.8 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 30/103 (29%), Positives = 52/103 (50%)
Query: 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166
S A++ L++ + K + D+ +F P+G I RIL G P+
Sbjct: 15 SNAVEDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRIL-------------RG-PD--G 58
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVKFANS 208
+S+G FV F+ A++A++ ++ + EG S PI VKFA++
Sbjct: 59 LSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADT 101
Score = 71 (30.1 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
++ L + V + + +++ +FS G++E C+++R S G FV + A+ A
Sbjct: 19 EDRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPD-GLSRGCAFVTFSTRAMAQNA 77
Query: 85 I 85
I
Sbjct: 78 I 78
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 153 (58.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 56/187 (29%), Positives = 87/187 (46%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSS-VGEVESCKLIRDKTTAQSLGYGFVNYYRTEDA 81
N + ++ V + +T L FS V+S K++ D T +S GYGFV + +
Sbjct: 198 NGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENER 257
Query: 82 ERAIIELNGLKLQNKSIKVSYARP----------SSEAIKRANLYVS-GLPKHMTQEDLE 130
RA+ E+NG N+ ++V A P SS+A+ A + S G + +Q D E
Sbjct: 258 SRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGE 317
Query: 131 NLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQIS----KGIGFVRFNQHIEAEHAM 186
+ TI I D + E++R S E+ + KG GFV+F AE A+
Sbjct: 318 ST---NATIFVGGIDPD-VIDEDLRQPFSQFGEVVSVKIPVGKGCGFVQFADRKSAEDAI 373
Query: 187 QELNGTI 193
+ LNGT+
Sbjct: 374 ESLNGTV 380
Score = 147 (56.8 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 54/197 (27%), Positives = 89/197 (45%)
Query: 8 YNTTQSHRSTYQSDVNEQNSN----LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKT 63
Y + Q H+ ++ + + L V + M + L FS GEV S K+IR+K
Sbjct: 85 YGSYQQHQHQQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKL 144
Query: 64 TAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS--IKVSYARPSS---EAIKRA---NL 115
T+QS GYGFV + AE + +G + N ++++A S+ A++ ++
Sbjct: 145 TSQSEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSV 204
Query: 116 YVSGLPKHMTQEDLENLFRP-YGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+V L +T L F Y ++ +++++ D S T SKG GFV
Sbjct: 205 FVGDLSPDVTDVLLHETFSDRYPSVKSAKVVID-----------SNTGR----SKGYGFV 249
Query: 175 RFNQHIEAEHAMQELNG 191
RF E A+ E+NG
Sbjct: 250 RFGDENERSRALTEMNG 266
Score = 111 (44.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 268 HGSGWCIFVYNLAPETEDNVLWQLFGP-FGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEA 326
+G +FV +L+P+ D +L + F + +V++ KVV D T + KG+GFV + +E
Sbjct: 198 NGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENER 257
Query: 327 VFAIQSLNGYALGDRLLQVSFKTHK 351
A+ +NG +R ++V T K
Sbjct: 258 SRALTEMNGAYCSNRQMRVGIATPK 282
Score = 92 (37.4 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV + P+ D L Q F FG V +VK+ P KG GFV + A AI+SL
Sbjct: 323 IFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---PVG---KGCGFVQFADRKSAEDAIESL 376
Query: 334 NGYALGDRLLQVSF 347
NG +G +++S+
Sbjct: 377 NGTVIGKNTVRLSW 390
Score = 68 (29.0 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
S+G GFV F AE +Q +G++ + +P + +A+
Sbjct: 148 SEGYGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWAS 187
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 145 (56.1 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
CI+V NL T D L LF G+V ++ +P T + KGFG V N ++A +I+
Sbjct: 311 CIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEK 369
Query: 333 LNGYALGDRLLQVSFKTHK-PLPPV 356
LNGY G R LQ+S+ + PLP V
Sbjct: 370 LNGYRYGGRPLQLSYAHYATPLPAV 394
Score = 94 (38.1 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 41/174 (23%), Positives = 71/174 (40%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
+Q + V + + EL+ VG V +C+++ + S G + Y E+A
Sbjct: 74 QQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEART 132
Query: 84 AIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLF---RPYGTII 140
AI L+ K + + + R + +++ S E LF PY +
Sbjct: 133 AIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVGNLPYN--V 190
Query: 141 TSRILCD--KMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGT 192
+ L D + A +R+ + E S+GIG V + EA HA+Q L+ T
Sbjct: 191 RWQDLKDLFRQAGSVIRADIQMNQE--GRSRGIGIVVMSSMKEAMHAIQMLHNT 242
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 173 (66.0 bits), Expect = 9.6e-13, P = 9.6e-13
Identities = 55/184 (29%), Positives = 94/184 (51%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+E L V + + +T+ + LFS +G ++CK+I D TA + Y FV ++ A
Sbjct: 3 DEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAA 60
Query: 83 RAIIELNGLKLQNKSIKVSYAR-PSSE----------AIKRA----NLYVSGLPKHMTQE 127
A+ +NG K+ K +KV++A PSS+ + +R+ +++V L +T E
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 128 DLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQ 187
D++ F P+G I +R++ D MA+ SKG GFV F +AE+A+Q
Sbjct: 121 DIKAAFAPFGRISDARVVKD-MATGK--------------SKGYGFVSFFNKWDAENAIQ 165
Query: 188 ELNG 191
++ G
Sbjct: 166 QMGG 169
Score = 149 (57.5 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 32/82 (39%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + F PFG + + +VV+D T K KG+GFV N +A AIQ +
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 168 GGQWLGGRQIRTNWATRKPPAP 189
Score = 126 (49.4 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 28/97 (28%), Positives = 52/97 (53%)
Query: 16 STYQSDVNEQNS-NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN 74
ST S Q+ ++ V + +T E+++ F+ G + ++++D T +S GYGFV+
Sbjct: 94 STVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVS 153
Query: 75 YYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIK 111
++ DAE AI ++ G L + I+ ++A A K
Sbjct: 154 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPK 190
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 191 (72.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ + D + + + P+ +T ++++ F+ G++ ++++D TT +S GYGFV++
Sbjct: 105 SSQKKDTSNHFHVFVGDLSPE-ITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSF 163
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
Y DAE AI+ + G L + I+ ++A A K K + +++ N P
Sbjct: 164 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQ---DNSAKQLRFDEVVNQSSP 220
Query: 136 YGTIITSRILCDKMASENVRSFVSGTPEIPQI----SKGIGFVRFNQHIEAEHAMQELNG 191
+ + + +R S +I +I KG F+RF+ H A HA+ +NG
Sbjct: 221 QNCTVYCGGIQSGLTEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNG 280
Query: 192 TIPEG 196
T EG
Sbjct: 281 TTIEG 285
Score = 142 (55.0 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 39/126 (30%), Positives = 64/126 (50%)
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYAR-PSSEAIKRAN---LYVSGLPKHMT 125
Y FV ++ DA A+ +NG K+ K +KV++A PSS+ +N ++V L +T
Sbjct: 68 YCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEIT 127
Query: 126 QEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHA 185
+D+ F P+G I +R+ V+ +G SKG GFV F ++AE+A
Sbjct: 128 TDDIRAAFAPFGKISDARV---------VKDMTTGK------SKGYGFVSFYNKLDAENA 172
Query: 186 MQELNG 191
+ + G
Sbjct: 173 IVHMGG 178
Score = 142 (55.0 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 31/82 (37%), Positives = 47/82 (57%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+PE + + F PFG + + +VV+D T K KG+GFV N +A AI +
Sbjct: 117 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 176
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
G LG R ++ ++ T KP P
Sbjct: 177 GGQWLGGRQIRTNWATRKPPAP 198
Score = 79 (32.9 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 285 DNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
++++ Q F PFG + ++V P+ KG+ F+ ++++ A AI S+NG + +++
Sbjct: 236 EHLMRQTFSPFGQIMEIRVF--PE----KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 289
Query: 345 VSFKTHKP 352
+ P
Sbjct: 290 CYWGKESP 297
Score = 67 (28.6 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 24/97 (24%), Positives = 45/97 (46%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKM-ASENVRSFVSGTPEIPQISKG-IG 172
LYV L + +T+ + LF G + +++ ++ +S + S G + S
Sbjct: 10 LYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQHTSNDPYC 69
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
FV F +H +A A+ +NG G + + V +A +P
Sbjct: 70 FVEFFEHRDAAAALAAMNGRKILG--KEVKVNWATTP 104
>UNIPROTKB|O73664 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:P26378 GeneTree:ENSGT00630000089747 CTD:5937 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 EMBL:AB009975 IPI:IPI00586219 RefSeq:NP_990355.1
UniGene:Gga.4540 SMR:O73664 Ensembl:ENSGALT00000018146
GeneID:395880 KEGG:gga:395880 NextBio:20815947 Uniprot:O73664
Length = 373
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 48/143 (33%), Positives = 79/143 (55%)
Query: 9 NTTQSHRSTYQSDVN--EQNS--NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT 64
+TT S+ ++ S + +Q S NL + +P T ++L L G++ S K I DKTT
Sbjct: 7 STTSSNNNSSSSSNSGWDQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTT 66
Query: 65 AQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHM 124
+ GYGFV++ A++A+ L +Q + K P+ NLY+S LP M
Sbjct: 67 NKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSM 119
Query: 125 TQEDLENLFRPYGTIITSRILCD 147
+++LEN+ +P+G +I++RIL D
Sbjct: 120 DEQELENMLKPFGQVISTRILRD 142
Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 36/100 (36%), Positives = 52/100 (52%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
NLY+S LP M +++LEN+ +P+G +I++RIL D SGT S+G+GF
Sbjct: 109 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDS----------SGT------SRGVGF 152
Query: 174 VRFNQHIEAEHAMQELNGTI---PEGAS---EPITVKFAN 207
R + E + NG P G S EP+ KFA+
Sbjct: 153 ARMESTEKCEAVIAHFNGKFIKTPAGVSVPAEPLLCKFAD 192
Score = 97 (39.2 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
+ + + NLY+ LP + T +DL L +PYG I++++ + DK ++
Sbjct: 24 DQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNK--------------- 68
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGT 192
KG GFV F+ A+ A+ L +
Sbjct: 69 CKGYGFVDFDSPAAAQKAVSALKAS 93
Score = 70 (29.7 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL ++ L + PFG V + +++RD + +G GF M + ++ I
Sbjct: 110 LYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIAHF 168
Query: 334 NG 335
NG
Sbjct: 169 NG 170
>UNIPROTKB|F1RPR6 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:CU914319 Ensembl:ENSSSCT00000017300 Uniprot:F1RPR6
Length = 375
Score = 190 (71.9 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 50/159 (31%), Positives = 82/159 (51%)
Query: 9 NTTQSHRSTYQSDVN--EQNS--NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT 64
+TT S+ ++ S + +Q S NL + +P T ++L L G++ S K I DKTT
Sbjct: 7 STTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTT 66
Query: 65 AQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHM 124
+ GYGFV++ A++A+ L +Q + K P+ NLY+S LP M
Sbjct: 67 NKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSM 119
Query: 125 TQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
+++LEN+ +P+G +I++RIL D + F E
Sbjct: 120 DEQELENMLKPFGQVISTRILRDSSGTSRGVGFARNRME 158
Score = 103 (41.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
+ + + NLY+ GLP + T +DL L +PYG I++++ + DK ++
Sbjct: 24 DQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNK--------------- 68
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGT 192
KG GFV F+ A+ A+ L +
Sbjct: 69 CKGYGFVDFDSPAAAQKAVSALKAS 93
Score = 59 (25.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQ-TYKCKGFGFVCMTNYDEAVFAIQS 332
+++ NL ++ L + PFG V + +++RD T + GF M + ++ I
Sbjct: 110 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARNRMESTEKCEAVIGH 169
Query: 333 LNG 335
NG
Sbjct: 170 FNG 172
>UNIPROTKB|E1C5J3 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 OMA:THVQTAA EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 IPI:IPI00680409 ProteinModelPortal:E1C5J3
Ensembl:ENSGALT00000033119 ArrayExpress:E1C5J3 Uniprot:E1C5J3
Length = 395
Score = 190 (71.9 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 48/143 (33%), Positives = 79/143 (55%)
Query: 9 NTTQSHRSTYQSDVN--EQNS--NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTT 64
+TT S+ ++ S + +Q S NL + +P T ++L L G++ S K I DKTT
Sbjct: 32 STTSSNNNSSSSSNSGWDQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTT 91
Query: 65 AQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHM 124
+ GYGFV++ A++A+ L +Q + K P+ NLY+S LP M
Sbjct: 92 NKCKGYGFVDFDSPAAAQKAVSALKASGVQAQMAKQQEQDPT-------NLYISNLPLSM 144
Query: 125 TQEDLENLFRPYGTIITSRILCD 147
+++LEN+ +P+G +I++RIL D
Sbjct: 145 DEQELENMLKPFGQVISTRILRD 167
Score = 130 (50.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 36/100 (36%), Positives = 52/100 (52%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
NLY+S LP M +++LEN+ +P+G +I++RIL D SGT S+G+GF
Sbjct: 134 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDS----------SGT------SRGVGF 177
Query: 174 VRFNQHIEAEHAMQELNGTI---PEGAS---EPITVKFAN 207
R + E + NG P G S EP+ KFA+
Sbjct: 178 ARMESTEKCEAVIAHFNGKFIKTPAGVSVPAEPLLCKFAD 217
Score = 97 (39.2 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
+ + + NLY+ LP + T +DL L +PYG I++++ + DK ++
Sbjct: 49 DQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKAILDKTTNK--------------- 93
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGT 192
KG GFV F+ A+ A+ L +
Sbjct: 94 CKGYGFVDFDSPAAAQKAVSALKAS 118
Score = 70 (29.7 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL ++ L + PFG V + +++RD + +G GF M + ++ I
Sbjct: 135 LYISNLPLSMDEQELENMLKPFGQVISTRILRD-SSGTSRGVGFARMESTEKCEAVIAHF 193
Query: 334 NG 335
NG
Sbjct: 194 NG 195
>UNIPROTKB|E2RA90 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:AAEX03013537 EMBL:AAEX03013538 EMBL:AAEX03013539
Ensembl:ENSCAFT00000008829 Uniprot:E2RA90
Length = 437
Score = 191 (72.3 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 45/139 (32%), Positives = 75/139 (53%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSL 68
N++ ++ S+ S +NL + +P T ++L L G++ S K I DK T Q
Sbjct: 43 NSSSNNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCK 102
Query: 69 GYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQED 128
GYGFV++ A++A+ L +Q + K P+ NLY+S LP M +++
Sbjct: 103 GYGFVDFDSPAAAQKAVASLKANGVQAQMAKQQEQDPT-------NLYISNLPISMDEQE 155
Query: 129 LENLFRPYGTIITSRILCD 147
LEN+ +P+G +I++RIL D
Sbjct: 156 LENMLKPFGHVISTRILRD 174
Score = 126 (49.4 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 35/100 (35%), Positives = 53/100 (53%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
NLY+S LP M +++LEN+ +P+G +I++RIL D +G +S+G+GF
Sbjct: 141 NLYISNLPISMDEQELENMLKPFGHVISTRILRD----------ANG------VSRGVGF 184
Query: 174 VRFNQHIEAEHAMQELNGTI---PEGA---SEPITVKFAN 207
R + E +Q NG P G SEP+ KFA+
Sbjct: 185 ARMESTEKCEVVIQHFNGKYLKTPPGIPAPSEPLLCKFAD 224
Score = 116 (45.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 95 NKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASE-N 153
N S S + S E + + NLY+ GLP T +DL L +PYG I++++ + DK ++
Sbjct: 43 NSSSNNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCK 102
Query: 154 VRSFVS-GTPEIPQISKGIGFVRFNQHIEAEHAMQE 188
FV +P Q K + ++ N ++A+ A Q+
Sbjct: 103 GYGFVDFDSPAAAQ--KAVASLKANG-VQAQMAKQQ 135
Score = 76 (31.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL ++ L + PFG V + +++RD +G GF M + ++ IQ
Sbjct: 142 LYISNLPISMDEQELENMLKPFGHVISTRILRDANGVS-RGVGFARMESTEKCEVVIQHF 200
Query: 334 NG 335
NG
Sbjct: 201 NG 202
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 162 (62.1 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV +L+ E ++ L + F PFG V + KV+RD T K KG+GFV +EA AI+ +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG LG R ++ ++ T KP
Sbjct: 197 NGQWLGRRTIRTNWATRKP 215
Score = 155 (59.6 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 50/176 (28%), Positives = 89/176 (50%)
Query: 19 QSDVNE-QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYR 77
QS ++ ++ ++ V + + ++L+ F G+V K+IRD T +S GYGFV+Y +
Sbjct: 126 QSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPK 185
Query: 78 TEDAERAIIELNGLKLQNKSIKVSYA-RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPY 136
E+AERAI ++NG L ++I+ ++A R + K ++ + Q +N
Sbjct: 186 REEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYV 245
Query: 137 GTIITSRILCDKMASENVRSFVSGTPEIPQISK--GIGFVRFNQHIEAEHAMQELN 190
G I + L + + SF T E+ +I K G FV+F+ A A+ ++N
Sbjct: 246 GNIAS---LTEDEIRQGFASFGRIT-EV-RIFKMQGYAFVKFDNKDAAAKAIVQMN 296
Score = 138 (53.6 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 43/191 (22%), Positives = 89/191 (46%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M++ + + +++ L V + T+T++ + LF+ +G V K+I D +
Sbjct: 26 MHSKLAEREGFHLGNGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP 85
Query: 67 SLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYA-RPSSEAIK-----RANLYVSGL 120
Y FV + A +A+ +N L ++ +KV++A P + K +++V L
Sbjct: 86 ---YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDL 142
Query: 121 PKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHI 180
+ + L F+P+G + ++++ D ++ SKG GFV + +
Sbjct: 143 SSEVDNQKLREAFQPFGDVSDAKVIRDTNTTK---------------SKGYGFVSYPKRE 187
Query: 181 EAEHAMQELNG 191
EAE A++++NG
Sbjct: 188 EAERAIEQMNG 198
Score = 97 (39.2 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
Identities = 27/82 (32%), Positives = 43/82 (52%)
Query: 269 GSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVF 328
G ++V N+A TED + Q F FG + V++ +K +G+ FV N D A
Sbjct: 238 GDNTSVYVGNIASLTEDEIR-QGFASFGRITEVRI------FKMQGYAFVKFDNKDAAAK 290
Query: 329 AIQSLNGYALGDRLLQVSF-KT 349
AI +N +G +L++ S+ KT
Sbjct: 291 AIVQMNNQDVGGQLVRCSWGKT 312
WARNING: HSPs involving 906 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 356 328 0.00088 116 3 11 22 0.41 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1156
No. of states in DFA: 609 (65 KB)
Total size of DFA: 222 KB (2122 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 27.97u 0.10s 28.07t Elapsed: 00:00:03
Total cpu time: 28.08u 0.10s 28.18t Elapsed: 00:00:04
Start: Thu Aug 15 15:05:26 2013 End: Thu Aug 15 15:05:30 2013
WARNINGS ISSUED: 2