RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9313
(356 letters)
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 76.9 bits (189), Expect = 2e-18
Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 15/99 (15%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
E+IK NLYV+ LP+ +T + L+ +F YG+I+ IL DK+
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL---------------TGR 46
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+G+ FVR+N+ EA+ A+ LN IPEG S+P++V+ A
Sbjct: 47 PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85
Score = 70.0 bits (171), Expect = 6e-16
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
++NL V +P+T+T ++L +F G + ++RDK T + G FV Y + E+A+ AI
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 65
Query: 86 IELNGLKLQ--NKSIKVSYA 103
LN + + ++ + V A
Sbjct: 66 SALNNVIPEGGSQPLSVRLA 85
Score = 62.7 bits (152), Expect = 3e-13
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL D+ L +FG +G++ ++RD T + +G FV +EA AI +L
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 68
Query: 334 NGYAL--GDRLLQVSF 347
N G + L V
Sbjct: 69 NNVIPEGGSQPLSVRL 84
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 77.0 bits (189), Expect = 4e-18
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
E N L + +P +T EE+ +F G + R T ++ G +V Y DA+
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQI---RVGNTPETRGTAYVVYEDIFDAKN 61
Query: 84 AIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYG 137
A L+G + N+ + V Y + K +E L+ L YG
Sbjct: 62 ACDHLSGFNVCNRYLVVLYYNANRAFQKM--------DTKKKEEQLKLLKEKYG 107
Score = 64.7 bits (157), Expect = 1e-13
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 262 LPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMT 321
LPP+ +++ NL + ++ +FG +G ++ +R T + +G +V
Sbjct: 2 LPPEV----NRILYIRNLPYKITAEEMYDIFGKYG---PIRQIRVGNTPETRGTAYVVYE 54
Query: 322 NYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352
+ +A A L+G+ + +R L V +
Sbjct: 55 DIFDAKNACDHLSGFNVCNRYLVVLYYNANR 85
Score = 57.7 bits (139), Expect = 3e-11
Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
LY+ LP +T E++ ++F YG I R+ ++G +V
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE------------------TRGTAYV 51
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMR 228
+ +A++A L+G + V + N+ K Q ++
Sbjct: 52 VYEDIFDAKNACDHLSGFNVCN--RYLVVLYYNANRAFQKMDTKKKEEQLKLLK 103
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 74.7 bits (183), Expect = 1e-17
Identities = 54/100 (54%), Positives = 69/100 (69%), Gaps = 15/100 (15%)
Query: 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166
S +I+ ANLYVSGLPK MTQ++LE LF YG IITSRIL D++
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV---------------TG 45
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+S+G+GF+RF++ IEAE A++ LNG P GA+EPITVKFA
Sbjct: 46 VSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 85
Score = 65.5 bits (159), Expect = 2e-14
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
++NL V+ +P+TMTQ+EL+ LFS G + + +++ D+ T S G GF+ + + +AE AI
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 86 IELNGLKLQ--NKSIKVSYA 103
LNG K + I V +A
Sbjct: 66 KGLNGQKPSGATEPITVKFA 85
Score = 56.2 bits (135), Expect = 5e-11
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L L QLF +G + +++ D T +G GF+ EA AI+ L
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 334 NGYALG--DRLLQVSF 347
NG + V F
Sbjct: 69 NGQKPSGATEPITVKF 84
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 74.5 bits (183), Expect = 2e-17
Identities = 17/94 (18%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 16 STYQSDVNEQNSNLIV-NYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVN 74
S+ ++D NS + + N + + +++ +FS G++ C + + G+ FV
Sbjct: 5 SSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GFAFVQ 56
Query: 75 YYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE 108
Y +A A+ +G + + + ++ A
Sbjct: 57 YVNERNARAAVAGEDGRMIAGQVLDINLAAEPKV 90
Score = 63.3 bits (154), Expect = 2e-13
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 273 CIFVYNLAPE-TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331
+F+ NL + + + +F +G + V KGF FV N A A+
Sbjct: 17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV--------HKGFAFVQYVNERNARAAVA 68
Query: 332 SLNGYALGDRLLQVSFKTHKP 352
+G + ++L ++
Sbjct: 69 GEDGRMIAGQVLDINLAAEPK 89
Score = 54.5 bits (131), Expect = 3e-10
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 26/105 (24%)
Query: 112 RANLYVSGLPKH-MTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
+ +++ L + + D+E +F YG I+ + G
Sbjct: 15 NSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK-----------------------G 51
Query: 171 IGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKA 215
FV++ A A+ +G + G + + + A P
Sbjct: 52 FAFVQYVNERNARAAVAGEDGRMIAG--QVLDINLAAEPKVNRSG 94
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 73.8 bits (181), Expect = 2e-17
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
+L V + +T+ L FS G + S ++ RD T +SLGY +VN+ + DAERA+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 88 LNGLKLQNKSIKVSYAR 104
+N ++ K +++ +++
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
Score = 69.2 bits (169), Expect = 1e-15
Identities = 16/74 (21%), Positives = 41/74 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V +L P+ + +L++ F P G + +++V RD T + G+ +V +A A+ ++
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 334 NGYALGDRLLQVSF 347
N + + +++ +
Sbjct: 63 NFDVIKGKPVRIMW 76
Score = 62.2 bits (151), Expect = 3e-13
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 17/95 (17%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A+LYV L +T+ L F P G I++ R+ D + + S G
Sbjct: 1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMI---------------TRRSLGYA 45
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
+V F Q +AE A+ +N + +G +P+ + ++
Sbjct: 46 YVNFQQPADAERALDTMNFDVIKG--KPVRIMWSQ 78
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 73.1 bits (179), Expect = 4e-17
Identities = 41/80 (51%), Positives = 58/80 (72%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
N+NLIVNY+PQ MT EL LF ++G + +C+++RD T S GY FV++ D++RAI
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 86 IELNGLKLQNKSIKVSYARP 105
LNG+ ++NK +KVSYARP
Sbjct: 62 KVLNGITVRNKRLKVSYARP 81
Score = 58.5 bits (141), Expect = 7e-12
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V L + D L+ LF G + +++RD +T G+ FV T+ ++ AI+ L
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 334 NGYALGDRLLQVSF 347
NG + ++ L+VS+
Sbjct: 65 NGITVRNKRLKVSY 78
Score = 53.1 bits (127), Expect = 6e-10
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
NL V+ LP+ MT +L LFR G I T RI+ D S G F
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYK---------------TGYSYGYAF 48
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
V F ++++ A++ LNG + + V +A
Sbjct: 49 VDFTSEMDSQRAIKVLNGITVRN--KRLKVSYA 79
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 73.4 bits (180), Expect = 5e-17
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKT-TAQSLGYGFVNYYRTEDAE 82
+ S ++V +P Q E++ LFS+ GE+++ +L + T T G+GFV++ +DA+
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 65
Query: 83 RAIIEL-NGLKLQNKSIKVSYARP 105
+A L + L + + + +A
Sbjct: 66 KAFNALCHSTHLYGRRLVLEWADS 89
Score = 64.6 bits (157), Expect = 8e-14
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP-QTYKCKGFGFVCMTNYDEAVFAIQS 332
I V N+ + + +LF FG ++ V++ + T +GFGFV +A A +
Sbjct: 11 ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNA 70
Query: 333 L-NGYALGDRLLQVSFKTHKP 352
L + L R L + + +
Sbjct: 71 LCHSTHLYGRRLVLEWADSEV 91
Score = 58.4 bits (141), Expect = 9e-12
Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 17/97 (17%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
+ + V +P Q ++ LF +G + T R+ +G G
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKK--------------MTGTGAHRGFG 54
Query: 173 FVRFNQHIEAEHAMQEL-NGTIPEGASEPITVKFANS 208
FV F +A+ A L + T G + +++A+S
Sbjct: 55 FVDFITKQDAKKAFNALCHSTHLYG--RRLVLEWADS 89
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 74.7 bits (182), Expect = 2e-16
Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 23/197 (11%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
EQ L + + T E L+ F G + C ++RD T +S G+GFV Y E+ +
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 84 AIIELNG-----LKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGT 138
A+ + +++ ++ + ++V G+ + + L + F YG
Sbjct: 64 AMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGK 123
Query: 139 IITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGAS 198
I I+ D+ + + +G FV F+ H + + + T+
Sbjct: 124 IEVIEIMTDRGSGKK---------------RGFAFVTFDDHDSVDKIVIQKYHTV---NG 165
Query: 199 EPITVKFANSPAGRAKA 215
V+ A S A A
Sbjct: 166 HNCEVRKALSKQEMASA 182
Score = 63.5 bits (153), Expect = 1e-12
Identities = 38/238 (15%), Positives = 70/238 (29%), Gaps = 69/238 (28%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L++ GL T E L + F +GT+ ++ D + S+G GFV
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN---------------TKRSRGFGFV 53
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRHFAAAM 234
+ E + AM + + A
Sbjct: 54 TYATVEEVDAAMNARPHKVDGRV-----------------------------VEPKRAVS 84
Query: 235 RHFGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGP 294
R K IFV + +TE++ L F
Sbjct: 85 REDSQRPGAHLTVK------------------------KIFVGGIKEDTEEHHLRDYFEQ 120
Query: 295 FGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSLNGYALGDRLLQVSFKTHKP 352
+G ++ ++++ D + K +GF FV ++D + + + +V K
Sbjct: 121 YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALSKQ 177
Score = 60.4 bits (145), Expect = 1e-11
Identities = 13/108 (12%), Positives = 39/108 (36%), Gaps = 1/108 (0%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIR 60
+ S + + + + V + + + L+ F G++E +++
Sbjct: 72 VDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMT 131
Query: 61 DKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE 108
D+ + + G+ FV + + ++ + + + +V A E
Sbjct: 132 DRGSGKKRGFAFVTFDDHDSVDKI-VIQKYHTVNGHNCEVRKALSKQE 178
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 71.9 bits (176), Expect = 2e-16
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
+++ L V + T+E++ LFS G+++ + DK + G+ FV YY DAE
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 64
Query: 84 AIIELNGLKLQNKSIKVSYARPSSE 108
A+ +NG +L ++ I+ + E
Sbjct: 65 AMRYINGTRLDDRIIRTDWDAGFKE 89
Score = 64.6 bits (157), Expect = 6e-14
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL+ T + +++LF G ++ + + D GF FV + +A A++ +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 334 NGYALGDRLLQVSF 347
NG L DR+++ +
Sbjct: 70 NGTRLDDRIIRTDW 83
Score = 53.8 bits (129), Expect = 4e-10
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 108 EAIKRAN-LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166
+ +K++ LYV L + T+E + LF G I + DKM
Sbjct: 2 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFC--------- 52
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
FV + +AE+AM+ +NGT + I +
Sbjct: 53 ------FVEYYSRADAENAMRYINGTRLDD--RIIRTDWDAGF 87
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 70.0 bits (171), Expect = 8e-16
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
++ S+LIV +P T+++L+ FS+ GEV ++ +D T S G+GFV + E +
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 84 AIIELNGLKLQNKSIKVSYARPSSE 108
+ + + + +
Sbjct: 66 VMSQRH--MIDGRWCDCKLPNSKQS 88
Score = 56.5 bits (136), Expect = 4e-11
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V L +T + L + F FG V V+V +D +T KGFGFV T Y+ V +
Sbjct: 11 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 70
Query: 334 NGYALGDRLLQVSFKTHK 351
+ + R K
Sbjct: 71 HM--IDGRWCDCKLPNSK 86
Score = 54.2 bits (130), Expect = 3e-10
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
K ++L V GLP T++DL+ F +G ++ ++ D SKG
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLK---------------TGHSKG 51
Query: 171 IGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
GFVRF ++ M + + +G K NS +
Sbjct: 52 FGFVRFTEYETQVKVMSQRHMI--DG--RWCDCKLPNSKQSQ 89
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 69.7 bits (170), Expect = 9e-16
Identities = 26/88 (29%), Positives = 48/88 (54%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
Q++ + V + + +++ L LF G V + + +D+ T Q GYGFV + EDA+
Sbjct: 6 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 65
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEAI 110
AI ++ +KL K I+V+ A ++ +
Sbjct: 66 YAIKIMDMIKLYGKPIRVNKASAHNKNL 93
Score = 58.1 bits (140), Expect = 1e-11
Identities = 20/78 (25%), Positives = 43/78 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V L + + +LW+LF G V N + +D T + +G+GFV + ++A +AI+ +
Sbjct: 12 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 71
Query: 334 NGYALGDRLLQVSFKTHK 351
+ L + ++V+ +
Sbjct: 72 DMIKLYGKPIRVNKASAH 89
Score = 57.7 bits (139), Expect = 2e-11
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 17/104 (16%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
P SE + A +YV GL + +++ L LF G ++ + + D++
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRV--------------- 46
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
+G GFV F +A++A++ ++ G +PI V A++
Sbjct: 47 TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG--KPIRVNKASA 88
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 69.6 bits (170), Expect = 1e-15
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 9 NTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSL 68
NT Q + + +N + + +T + ++ FS G++ ++ +K
Sbjct: 1 NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG----- 55
Query: 69 GYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS 106
Y FV + E A AI+ +NG ++ +K + + S
Sbjct: 56 -YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 92
Score = 61.9 bits (150), Expect = 6e-13
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++ +A D ++ Q F PFG + ++V KG+ FV + ++ A AI S+
Sbjct: 21 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP------EKGYSFVRFSTHESAAHAIVSV 74
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + +++ + P
Sbjct: 75 NGTTIEGHVVKCYWGKESP 93
Score = 49.2 bits (117), Expect = 2e-08
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 23/98 (23%)
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
K +Y G+ +T + + F P+G I+ R+ +K
Sbjct: 17 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG--------------------- 55
Query: 171 IGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
FVRF+ H A HA+ +NGT EG + +
Sbjct: 56 YSFVRFSTHESAAHAIVSVNGTTIEG--HVVKCYWGKE 91
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 68.1 bits (166), Expect = 4e-15
Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
+ N+ + V + + + +LQ LF G + L +DKTT QS G+ F++++R EDA R
Sbjct: 6 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAAR 65
Query: 84 AIIELNGLKLQNKSIKVSYARPSS 107
AI ++G + + V +A+PS+
Sbjct: 66 AIAGVSGFGYDHLILNVEWAKPST 89
Score = 55.8 bits (134), Expect = 8e-11
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I V NL+ +T + L +LF PFG++ + + +D T + KGF F+ ++A AI +
Sbjct: 11 IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGV 70
Query: 334 NGYALGDRLLQVSF 347
+G+ +L V +
Sbjct: 71 SGFGYDHLILNVEW 84
Score = 51.2 bits (122), Expect = 4e-09
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
P+ A A + V+ L + + DL+ LFRP+G+I + DK
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKT--------------- 45
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
SKG F+ F++ +A A+ ++G + + V++A
Sbjct: 46 TGQSKGFAFISFHRREDAARAIAGVSGFGYDH--LILNVEWA 85
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 67.4 bits (164), Expect = 5e-15
Identities = 58/81 (71%), Positives = 68/81 (83%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+NLIVNY+PQ MTQEE + LF S+GE+ESCKL+RDK T QSLGYGFVNY +DAE+AI
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
Query: 86 IELNGLKLQNKSIKVSYARPS 106
LNGL+LQ K+IKVSYARPS
Sbjct: 62 NTLNGLRLQTKTIKVSYARPS 82
Score = 55.9 bits (134), Expect = 6e-11
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V L LFG G +++ K+VRD T + G+GFV + +A AI +L
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 334 NGYALGDRLLQVSF 347
NG L + ++VS+
Sbjct: 65 NGLRLQTKTIKVSY 78
Score = 49.3 bits (117), Expect = 1e-08
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 17/95 (17%)
Query: 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGI 171
+ NL V+ LP++MTQE+ +LF G I + +++ DK+ S G
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKI---------------TGQSLGY 46
Query: 172 GFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
GFV + +AE A+ LNG + + I V +A
Sbjct: 47 GFVNYIDPKDAEKAINTLNGLRLQT--KTIKVSYA 79
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 65.4 bits (159), Expect = 3e-14
Identities = 22/80 (27%), Positives = 43/80 (53%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L + +P + ++++ L +S G +++ L++D T S GY F Y ++AI L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 89 NGLKLQNKSIKVSYARPSSE 108
NG++L +K + V A ++
Sbjct: 64 NGMQLGDKKLLVQRASVGAK 83
Score = 61.2 bits (148), Expect = 8e-13
Identities = 22/79 (27%), Positives = 36/79 (45%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ L D+ + +L FG ++ +V+D T KG+ F + + AI L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG LGD+ L V +
Sbjct: 64 NGMQLGDKKLLVQRASVGA 82
Score = 53.1 bits (127), Expect = 7e-10
Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 17/99 (17%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L++ GLP ++ + ++ L +G + ++ D +SKG F
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA---------------TGLSKGYAFC 48
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRA 213
+ + A+ LNG + + V+ A+ A A
Sbjct: 49 EYVDINVTDQAIAGLNGMQLGD--KKLLVQRASVGAKNA 85
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 65.1 bits (158), Expect = 5e-14
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
N+ + + +++ + L FS+ G + SCK++ D+ S GYGFV++ E AERA
Sbjct: 7 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERA 64
Query: 85 IIELNGLKLQNKSIKVSYARPSSE 108
I ++NG+ L ++ + V + E
Sbjct: 65 IEKMNGMLLNDRKVFVGRFKSRKE 88
Score = 58.1 bits (140), Expect = 1e-11
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 19/108 (17%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
PS N+++ L K + + L + F +G I++ +++CD+ S+ T E
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQE- 59
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
AE A++++NG + + V S R
Sbjct: 60 ----------------AAERAIEKMNGMLLND--RKVFVGRFKSRKER 89
Score = 55.0 bits (132), Expect = 2e-10
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IF+ NL ++ L+ F FG + + KVV D K +GFV + A AI+ +
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG--YGFVHFETQEAAERAIEKM 68
Query: 334 NGYALGDRLLQVSFKTHK 351
NG L DR + V +
Sbjct: 69 NGMLLNDRKVFVGRFKSR 86
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 64.3 bits (156), Expect = 7e-14
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + + + + L F G++ ++ D T + G+ FV + EDA AI +
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 89 NGLKLQNKSIKVSYARP 105
N +L ++I+V+ A+P
Sbjct: 68 NESELFGRTIRVNLAKP 84
Score = 58.5 bits (141), Expect = 9e-12
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
++V LA E +D VL F PFG + ++++ D +T K +GF FV ++A AI +
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 333 LNGYALGDRLLQVSF 347
+N L R ++V+
Sbjct: 67 MNESELFGRTIRVNL 81
Score = 49.7 bits (118), Expect = 1e-08
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
LYV GL + + + L F P+G I +I D + +G FV
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYE---------------TEKHRGFAFV 52
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
F +A A+ +N + G I V A
Sbjct: 53 EFELAEDAAAAIDNMNESELFG--RTIRVNLA 82
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 64.0 bits (155), Expect = 1e-13
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLI--------RDKTTAQSLGYGF 72
D + NS + V + ++T ++L F G V+ K DK T + G
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 73 VNYYRTEDAERAIIELNGLKLQNKSIKVSYARP 105
V+Y A+ A+ +G Q +KVS AR
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARK 95
Score = 57.9 bits (139), Expect = 2e-11
Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVV--------RDPQTYKCKGFGFVCMTNYD 324
I+V L + L F G V+ K D +T K KG V +
Sbjct: 10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP 69
Query: 325 EAVFAIQSLNGYALGDRLLQVSFKTHKP 352
A A++ +G L+VS KP
Sbjct: 70 TAKAAVEWFDGKDFQGSKLKVSLARKKP 97
Score = 51.3 bits (122), Expect = 4e-09
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 9/106 (8%)
Query: 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166
E + +YV GL +T +DL + F+ G + ++ M +
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKE-------TG 55
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
KG V + A+ A++ +G +G + V A
Sbjct: 56 KPKGDATVSYEDPPTAKAAVEWFDGKDFQG--SKLKVSLARKKPPM 99
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 63.9 bits (155), Expect = 1e-13
Identities = 30/100 (30%), Positives = 50/100 (50%)
Query: 10 TTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLG 69
T QS + + +NL + ++PQ ++L +F G V S K+ DK T S
Sbjct: 2 TQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 61
Query: 70 YGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
+GFV+Y A+ AI +NG ++ K +KV R +++
Sbjct: 62 FGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
Score = 56.2 bits (135), Expect = 9e-11
Identities = 36/81 (44%), Positives = 46/81 (56%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G +F+Y+L E D L Q+F PFG V + KV D QT K FGFV N A AI
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 77
Query: 331 QSLNGYALGDRLLQVSFKTHK 351
QS+NG+ +G + L+V K K
Sbjct: 78 QSMNGFQIGMKRLKVQLKRSK 98
Score = 50.9 bits (121), Expect = 5e-09
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 17/110 (15%)
Query: 99 KVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFV 158
+ A E + ANL++ LP+ +DL +F P+G ++++++ DK
Sbjct: 5 SIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQ--------- 55
Query: 159 SGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
+SK GFV ++ + A+ A+Q +NG + + V+ S
Sbjct: 56 ------TNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM--KRLKVQLKRS 97
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 63.1 bits (153), Expect = 2e-13
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+ Q L V + + +T+ + LFS +G +SCK+I + T+ Y FV +Y DA
Sbjct: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAA 62
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSE 108
A+ +NG K+ K +KV++A S
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSS 88
Score = 52.4 bits (125), Expect = 1e-09
Identities = 16/79 (20%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL+ + + ++ QLF G ++ K++ + + + FV + +A A+ ++
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG + + ++V++ T
Sbjct: 69 NGRKILGKEVKVNWATTPS 87
Score = 51.2 bits (122), Expect = 4e-09
Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
LYV L + +T+ + LF G + +++ + +++ FV
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYC-----------------FV 53
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
F +H +A A+ +NG G + + V +A +P+ +
Sbjct: 54 EFYEHRDAAAALAAMNGRKILG--KEVKVNWATTPSSQ 89
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 63.2 bits (153), Expect = 3e-13
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+ L V + T ++E+L+ LFS+ G + D T + G+ FV + E A +A
Sbjct: 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAY 67
Query: 86 IELNGLKLQNKSIKVSYARPSSEAIKRA 113
E++G Q + + V + EA +
Sbjct: 68 AEVDGQVFQGRMLHVLPSTIKKEASQSG 95
Score = 56.6 bits (136), Expect = 5e-11
Identities = 25/79 (31%), Positives = 37/79 (46%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV NL+ + + L +LF +G + + D T K KGF FV + AV A +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 334 NGYALGDRLLQVSFKTHKP 352
+G R+L V T K
Sbjct: 71 DGQVFQGRMLHVLPSTIKK 89
Score = 51.6 bits (123), Expect = 3e-09
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 17/110 (15%)
Query: 106 SSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIP 165
SS + L+V L ++EDLE LF YG + D +
Sbjct: 2 SSGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSL---------------T 46
Query: 166 QISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKA 215
+ KG FV F A A E++G + +G + V + +++
Sbjct: 47 KKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG--RMLHVLPSTIKKEASQS 94
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 62.3 bits (151), Expect = 3e-13
Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L+V+ + ++ ++Q LF+ G ++ + D++ G V++ R DA +A+ +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSL-GTADVHFERKADALKAMKQY 61
Query: 89 NGLKLQNKSIKVSYA 103
NG+ L + + +
Sbjct: 62 NGVPLDGRPMNIQLV 76
Score = 61.1 bits (148), Expect = 7e-13
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V NL D + +LF FG ++ V ++ + G V +A+ A++
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADVHFERKADALKAMKQY 61
Query: 334 NGYALGDRLLQVSFKT 349
NG L R + + T
Sbjct: 62 NGVPLDGRPMNIQLVT 77
Score = 55.3 bits (133), Expect = 8e-11
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 18/94 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L VS L ++ D++ LF +GT+ + + D+ S G V
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRS----------------GRSLGTADV 46
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
F + +A AM++ NG +G P+ ++ S
Sbjct: 47 HFERKADALKAMKQYNGVPLDG--RPMNIQLVTS 78
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 61.9 bits (150), Expect = 3e-13
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
+ + + TQE L+ F GEV+ C ++RD T +S G+GFV + ++ +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKV-LAQ 61
Query: 89 NGLKLQNKSIKVSYA 103
+ +L +K+I A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 55.0 bits (132), Expect = 1e-10
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ L+ +T L + FG FG V+ V+RDP T + +GFGFV + +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-Q 61
Query: 334 NGYALGDRLLQVSF 347
+ + L + +
Sbjct: 62 SRHELDSKTIDPKV 75
Score = 52.7 bits (126), Expect = 8e-10
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 18/92 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+++ GL TQE L F +G + ++ D + + S+G GFV
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPL---------------TKRSRGFGFV 47
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
F + + + + + I K A
Sbjct: 48 TFMDQAGVDKVL-AQSRHELDS--KTIDPKVA 76
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 61.7 bits (149), Expect = 6e-13
Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAV-QNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
IF+ NL PE ++ +L+ F FG + Q K++RDP T KG+ F+ ++D + AI++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 333 LNGYALGDRLLQVSFKTHKP 352
+NG L +R + VS+ K
Sbjct: 61 MNGQYLCNRPITVSYAFKKD 80
Score = 61.3 bits (148), Expect = 7e-13
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESC-KLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
+ + + + ++ L FS+ G + K++RD T S GY F+N+ + ++ AI
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 88 LNGLKLQNKSIKVSYARPSSE 108
+NG L N+ I VSYA
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
Score = 54.8 bits (131), Expect = 1e-10
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 16/98 (16%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+++ L + ++ L + F +G I+ + + + N SKG F+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN--------------SKGYAFI 46
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
F ++ A++ +NG PITV +A +
Sbjct: 47 NFASFDASDAAIEAMNGQYLCN--RPITVSYAFKKDSK 82
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 61.6 bits (149), Expect = 6e-13
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKT---TAQSLGYGFVNYYRTEDAERAI 85
L + + + T+E L+ +FS VG ++SC + + K S+G+GFV Y + E A++A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 86 IELNGLKLQNKSIKVSYARPSS 107
+L G + ++V + ++
Sbjct: 61 KQLQGHTVDGHKLEVRISERAT 82
Score = 60.0 bits (145), Expect = 2e-12
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDP---QTYKCKGFGFVCMTNYDEAVFAI 330
+F+ NL T + L +F GA+++ + + GFGFV ++A A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 331 QSLNGYALGDRLLQVSFKTHKPLP 354
+ L G+ + L+V P
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKP 84
Score = 57.3 bits (138), Expect = 2e-11
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L++ L T+E L+ +F G I + I K + + S G GFV
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLL------------SMGFGFV 48
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
+ + +A+ A+++L G +G + V+ +
Sbjct: 49 EYKKPEQAQKALKQLQGHTVDG--HKLEVRISERA 81
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 61.6 bits (149), Expect = 7e-13
Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
D L V + + ++E ++ F+++ ++ + + Y FV++ E
Sbjct: 2 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD------YAFVHFSNRE 55
Query: 80 DAERAIIELNGLKLQNKSIKVSYARP 105
DA A+ LNG L I+V+ A+P
Sbjct: 56 DAVEAMKALNGKVLDGSPIEVTLAKP 81
Score = 55.4 bits (133), Expect = 1e-10
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
++V NL T + ++ + F +V K + + FV +N ++AV A+++L
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVEAMKAL 64
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG L ++V+
Sbjct: 65 NGKVLDGSPIEVTLAKPVD 83
Score = 47.7 bits (113), Expect = 6e-08
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 23/95 (24%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
LYV L ++E +E F R+ + + FV
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV---------------------KKIRDYAFV 49
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
F+ +A AM+ LNG + +G PI V A
Sbjct: 50 HFSNREDAVEAMKALNGKVLDG--SPIEVTLAKPV 82
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 62.0 bits (150), Expect = 7e-13
Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
M T ++ + EQ L + + T+E L++ + G++ C ++RD + +
Sbjct: 1 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 60
Query: 67 SLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEA 109
S G+GFV + + + A + + + ++ A E+
Sbjct: 61 SRGFGFVTFSSMAEVDAA-MAARPHSIDGRVVEPKRAVAREES 102
Score = 57.0 bits (137), Expect = 4e-11
Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ L+ ET + L + +G + + V+RDP + + +GFGFV ++ E A+
Sbjct: 23 LFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 81
Query: 334 NGYALGDRLLQVSF 347
+++ R+++
Sbjct: 82 RPHSIDGRVVEPKR 95
Score = 53.5 bits (128), Expect = 6e-10
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 18/105 (17%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
R E + L++ GL T+E L N + +G + ++ D
Sbjct: 12 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPA-------------- 57
Query: 164 IPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
+ S+G GFV F+ E + AM +G + K A +
Sbjct: 58 -SKRSRGFGFVTFSSMAEVDAAM-AARPHSIDG--RVVEPKRAVA 98
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 62.0 bits (150), Expect = 8e-13
Identities = 16/89 (17%), Positives = 35/89 (39%), Gaps = 6/89 (6%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
+IV + +T + L +FS G V + Y A+ A +
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQ----FQALLQYADPVSAQHAKLS 64
Query: 88 LNGLKLQ--NKSIKVSYARPSSEAIKRAN 114
L+G + ++++ +++ +S +K N
Sbjct: 65 LDGQNIYNACCTLRIDFSKLTSLNVKYNN 93
Score = 53.5 bits (128), Expect = 7e-10
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
I V NL +VL Q+F FG V + + + + A A S
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT----KNNQFQALLQYADPVSAQHAKLS 64
Query: 333 LNGYAL--GDRLLQVSFKTHKPL 353
L+G + L++ F L
Sbjct: 65 LDGQNIYNACCTLRIDFSKLTSL 87
Score = 51.6 bits (123), Expect = 4e-09
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 19/95 (20%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
+ V L +T + L +F +GT++ ++
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-------------------NQFQAL 49
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
+++ + A+HA L+G A + + F+
Sbjct: 50 LQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 84
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 61.3 bits (148), Expect = 9e-13
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
+ L V + + ++E+Q F GE+++ L D+ T S GY V Y + A A
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA 65
Query: 85 IIELNGLKLQNKSIKVSYARP 105
LNG ++ ++I+V +
Sbjct: 66 KEALNGAEIMGQTIQVDWCFV 86
Score = 61.3 bits (148), Expect = 1e-12
Identities = 23/89 (25%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 263 PPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTN 322
P +S+ GW +FV ++ E +++ + + F +G ++N+ + D +T KG+ V
Sbjct: 1 PQRSV--EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYET 58
Query: 323 YDEAVFAIQSLNGYALGDRLLQVSFKTHK 351
+ +A+ A ++LNG + + +QV + K
Sbjct: 59 HKQALAAKEALNGAEIMGQTIQVDWCFVK 87
Score = 48.6 bits (115), Expect = 3e-08
Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 17/101 (16%)
Query: 108 EAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQI 167
+++ L+V+ + + +++++ F YG I + D+
Sbjct: 3 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRR---------------TGF 47
Query: 168 SKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
SKG V + H +A A + LNG G + I V +
Sbjct: 48 SKGYALVEYETHKQALAAKEALNGAEIMG--QTIQVDWCFV 86
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 60.9 bits (147), Expect = 1e-12
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
+ N L V + T+ +L+ +FS G + ++ D+ + +S G+ FV + +DA+
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 66
Query: 84 AIIELNGLKLQNKSIKV 100
A NG++L + I+V
Sbjct: 67 AKERANGMELDGRRIRV 83
Score = 58.9 bits (142), Expect = 6e-12
Identities = 24/73 (32%), Positives = 41/73 (56%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
C+ V+ L+ T + L ++F +G + +V +V D Q+ + +GF FV N D+A A +
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKER 70
Query: 333 LNGYALGDRLLQV 345
NG L R ++V
Sbjct: 71 ANGMELDGRRIRV 83
Score = 47.0 bits (111), Expect = 8e-08
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
L V GL + T+ DL +F YG I I+ D+ + S+G F
Sbjct: 11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQ---------------SRRSRGFAF 55
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITV 203
V F +A+ A + NG +G I V
Sbjct: 56 VYFENVDDAKEAKERANGMELDG--RRIRV 83
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 60.8 bits (147), Expect = 1e-12
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSV-GEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
N + +N + + + ++EL+ ++ I + + G FV + A A
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKR 112
+ + G +K +++ YA+ S+ I +
Sbjct: 63 LRSMQGFPFYDKPMRIQYAKTDSDIIAK 90
Score = 52.4 bits (125), Expect = 1e-09
Identities = 14/79 (17%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGP-FGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
I++ NL + + + L + F + + ++ K +G FV A A++S
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 65
Query: 333 LNGYALGDRLLQVSFKTHK 351
+ G+ D+ +++ +
Sbjct: 66 MQGFPFYDKPMRIQYAKTD 84
Score = 47.0 bits (111), Expect = 1e-07
Identities = 17/110 (15%), Positives = 43/110 (39%), Gaps = 30/110 (27%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLE----NLFRPYGTIITSRILCDKMASENVRSFVS 159
RP+ +Y++ L + + +++L+ +F +G I+ +
Sbjct: 1 RPNH------TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLK---------- 44
Query: 160 GTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
+G FV F + A +A++ + G +P+ +++A +
Sbjct: 45 --------MRGQAFVIFKEVSSATNALRSMQGFPFYD--KPMRIQYAKTD 84
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 60.5 bits (146), Expect = 2e-12
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 16 STYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNY 75
S+ S+ L V+ +P +L+ +F G++ ++I ++ S G+GFV +
Sbjct: 1 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTF 58
Query: 76 YRTEDAERAIIELNGLKLQNKSIKVSYARP 105
+ DA+RA +L+G ++ + I+V+ A
Sbjct: 59 ENSADADRAREKLHGTVVEGRKIEVNNATA 88
Score = 53.1 bits (127), Expect = 7e-10
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V N+ D L Q+FG FG + +V+++ + + K FGFV N +A A + L
Sbjct: 14 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKG--FGFVTFENSADADRAREKL 71
Query: 334 NGYALGDRLLQVSFKTHKP 352
+G + R ++V+ T +
Sbjct: 72 HGTVVEGRKIEVNNATARV 90
Score = 52.0 bits (124), Expect = 2e-09
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 19/95 (20%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
L+VS +P DL +F +G I+ I+ ++ S+
Sbjct: 13 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSA---------- 62
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
+A+ A ++L+GT+ EG I V A +
Sbjct: 63 -------DADRAREKLHGTVVEG--RKIEVNNATA 88
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 60.0 bits (145), Expect = 2e-12
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
Q S L V +P +T+EE++ LF G+ + +DK +GF+ AE A
Sbjct: 7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRTLAEIA 60
Query: 85 IIELNGLKLQNKSIKVSYARPSS 107
+EL+ + L+ K ++V +A S+
Sbjct: 61 KVELDNMPLRGKQLRVRFACHSA 83
Score = 55.7 bits (134), Expect = 7e-11
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV NL P+ + + +LF +G V +K KGFGF+ + A A L
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEV------FIHKDKGFGFIRLETRTLAEIAKVEL 64
Query: 334 NGYALGDRLLQVSFKTHKP 352
+ L + L+V F H
Sbjct: 65 DNMPLRGKQLRVRFACHSA 83
Score = 53.4 bits (128), Expect = 4e-10
Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 23/101 (22%)
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKG 170
+R+ L+V LP +T+E++ LF YG I DK
Sbjct: 7 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG--------------------- 45
Query: 171 IGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAG 211
GF+R AE A EL+ G + + V+FA A
Sbjct: 46 FGFIRLETRTLAEIAKVELDNMPLRG--KQLRVRFACHSAS 84
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 60.0 bits (145), Expect = 3e-12
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 28 NLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIE 87
+ + + +L+ FS+VG+V ++I D+ + +S G +V + + I
Sbjct: 20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPL-AIG 78
Query: 88 LNGLKLQNKSIKVSYARP 105
L G +L I V ++
Sbjct: 79 LTGQRLLGVPIIVQASQA 96
Score = 55.0 bits (132), Expect = 2e-10
Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F LA L F G V++V+++ D + + KG +V L
Sbjct: 21 VFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP-LAIGL 79
Query: 334 NGYALGDRLLQVSF 347
G L + V
Sbjct: 80 TGQRLLGVPIIVQA 93
Score = 46.9 bits (111), Expect = 1e-07
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 18/108 (16%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
S E ++ L + DLE+ F G + RI+ D+ +
Sbjct: 11 LSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRR------------ 58
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
SKGI +V F + L G G PI V+ + + R
Sbjct: 59 ---SKGIAYVEFCEIQSVP-LAIGLTGQRLLG--VPIIVQASQAEKNR 100
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 59.7 bits (144), Expect = 4e-12
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESC--KLIRDKTTAQSLGYGFVNYYRTEDAER 83
N L + +P+ +EE+ + V E ++ G+ FV Y A
Sbjct: 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAM 60
Query: 84 AIIELNG--LKLQNKSIKVSYARPSSE 108
A +L ++L I V +A P +
Sbjct: 61 ARRKLMPGRIQLWGHQIAVDWAEPEID 87
Score = 56.6 bits (136), Expect = 5e-11
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 13/93 (13%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L++ G+PK +E++ + I+ ++G FV
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA-------------ADKMKNRGFAFV 50
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
+ H A A ++L + I V +A
Sbjct: 51 EYESHRAAAMARRKLMPGRIQLWGHQIAVDWAE 83
Score = 53.2 bits (127), Expect = 9e-10
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQN--VKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331
+F+ + + + + + K +GF FV ++ A A +
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 332 SLNG--YALGDRLLQVSFKTHKPLP 354
L L + V + +
Sbjct: 64 KLMPGRIQLWGHQIAVDWAEPEIDV 88
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 59.3 bits (143), Expect = 5e-12
Identities = 13/78 (16%), Positives = 33/78 (42%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+ + V +P T++ +E+ F + ++ G V + ++A A+
Sbjct: 9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAV 68
Query: 86 IELNGLKLQNKSIKVSYA 103
I+LN + ++ +K+
Sbjct: 69 IDLNDRPIGSRKVKLVLG 86
Score = 57.0 bits (137), Expect = 3e-11
Identities = 14/78 (17%), Positives = 28/78 (35%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
I V N+ + + F + + ++ + G V + DEA A
Sbjct: 8 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAA 67
Query: 330 IQSLNGYALGDRLLQVSF 347
+ LN +G R +++
Sbjct: 68 VIDLNDRPIGSRKVKLVL 85
Score = 49.3 bits (117), Expect = 2e-08
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 17/102 (16%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
SS + V +P ++ +++ + F Y I S L
Sbjct: 2 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNE--------------- 46
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
+ G V F EA A+ +LN + +
Sbjct: 47 KGMPTGEAMVAFESRDEATAAVIDLNDRPIGS--RKVKLVLG 86
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 58.8 bits (142), Expect = 8e-12
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 40 QEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIK 99
+E+L+ S G++ L G V++ E+A+ I L+G + I
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPD----GVASVSFRDPEEADYCIQTLDGRWFGGRQIT 88
Query: 100 VSYARPSS 107
++
Sbjct: 89 AQAWDGTT 96
Score = 53.0 bits (127), Expect = 8e-10
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 273 CIFVYNL--APETEDNVLW------QLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD 324
+ + N+ + ED+ L L ++ + G V + +
Sbjct: 10 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRHPDGVASVSFRDPE 68
Query: 325 EAVFAIQSLNGYALGDRLLQVSFKTHK 351
EA + IQ+L+G G R +
Sbjct: 69 EADYCIQTLDGRWFGGRQITAQAWDGT 95
Score = 38.7 bits (90), Expect = 1e-04
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 20/93 (21%)
Query: 122 KHM-TQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQIS------KGIGFV 174
K+M D E+ I E++R S +I ++ G+ V
Sbjct: 14 KNMFHPMDFEDDPLVLNEIR-----------EDLRVECSKFGQIRKLLLFDRHPDGVASV 62
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
F EA++ +Q L+G G IT + +
Sbjct: 63 SFRDPEEADYCIQTLDGRWFGG--RQITAQAWD 93
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 58.1 bits (140), Expect = 8e-12
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
+ + + T+++L+ FS GEV C L D T +S G+GFV + +E ++ ++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKV-MDQ 60
Query: 89 NGLKLQNKSIKVSYA 103
KL K I A
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 54.2 bits (130), Expect = 2e-10
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ L+ +T L F FG V + + DP T + +GFGFV + +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-Q 60
Query: 334 NGYALGDRLLQV 345
+ L +++
Sbjct: 61 KEHKLNGKVIDP 72
Score = 42.7 bits (100), Expect = 2e-06
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+++ GL T++DL++ F +G ++ + D + S+G GFV
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI---------------TGRSRGFGFV 46
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
F + + M + G I K A
Sbjct: 47 LFKESESVDKVM-DQKEHKLNGK--VIDPKRA 75
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 59.0 bits (142), Expect = 9e-12
Identities = 19/88 (21%), Positives = 39/88 (44%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
+ E N L + + +T+ +L LF+ E + + T + G F+ + E
Sbjct: 13 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEI 72
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSE 108
A +A+ +NG KL K + + + + +
Sbjct: 73 AWQALHLVNGYKLYGKILVIEFGKNKKQ 100
Score = 51.7 bits (123), Expect = 3e-09
Identities = 20/78 (25%), Positives = 37/78 (47%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL+P + L LF F + + T + +G F+ N + A A+ +
Sbjct: 21 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 80
Query: 334 NGYALGDRLLQVSFKTHK 351
NGY L ++L + F +K
Sbjct: 81 NGYKLYGKILVIEFGKNK 98
Score = 43.2 bits (101), Expect = 3e-06
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 17/100 (17%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
LY+ L +T+ DL +LF + I M +G F
Sbjct: 20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---------------TGRMRGQAF 64
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRA 213
+ F A A+ +NG G + + ++F + R+
Sbjct: 65 ITFPNKEIAWQALHLVNGYKLYG--KILVIEFGKNKKQRS 102
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 57.8 bits (139), Expect = 2e-11
Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
+ + V +P + ++++ +F G + L + + FV + DAE
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGPPFAFVEFEDPRDAED 68
Query: 84 AIIELNGLKLQNKSIKVSYARP 105
A+ +G ++V + R
Sbjct: 69 AVYGRDGYDYDGYRLRVEFPRS 90
Score = 54.3 bits (130), Expect = 3e-10
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I+V NL P+ + +F +G ++ + F FV + +A A+
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYG---AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGR 73
Query: 334 NGYALGDRLLQVSF 347
+GY L+V F
Sbjct: 74 DGYDYDGYRLRVEF 87
Score = 49.3 bits (117), Expect = 2e-08
Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 20/98 (20%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+YV LP + +D+E++F YG I + + FV
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG------------------GPPFAFV 58
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
F +AE A+ +G +G + V+F S G
Sbjct: 59 EFEDPRDAEDAVYGRDGYDYDG--YRLRVEFPRSGRGT 94
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 57.1 bits (137), Expect = 2e-11
Identities = 16/80 (20%), Positives = 33/80 (41%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
L + P + TQ ++ L + V + S + +++ EDA +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 86 IELNGLKLQNKSIKVSYARP 105
+LNGLK++ ++ + P
Sbjct: 61 EKLNGLKIEGYTLVTKVSNP 80
Score = 52.9 bits (126), Expect = 7e-10
Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ N P + L V + + + F ++ +T+ ++A + ++ L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 334 NGYALGDRLLQVSFKTHKPL 353
NG + L PL
Sbjct: 64 NGLKIEGYTLVTKVS--NPL 81
Score = 46.3 bits (109), Expect = 1e-07
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 17/93 (18%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L+++ P TQ ++ +L + + S L S+ ++
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR---------------FNTSRRFAYI 48
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
+A + +++LNG EG + K +N
Sbjct: 49 DVTSKEDARYCVEKLNGLKIEG--YTLVTKVSN 79
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 57.7 bits (139), Expect = 2e-11
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT 78
S L+ + +T++EL+ +F ++ +S G ++ +
Sbjct: 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSE 63
Query: 79 EDAERAIIELNGLKLQNKSIKVSYARP 105
DAE+ + E G ++ +S+ + Y
Sbjct: 64 ADAEKNLEEKQGAEIDGRSVSLYYTGE 90
Score = 53.1 bits (127), Expect = 8e-10
Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ NL+ ++ L ++F ++ V Q K KG ++ + +A ++
Sbjct: 19 LLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEK 73
Query: 334 NGYALGDRLLQVSFKTHK 351
G + R + + + K
Sbjct: 74 QGAEIDGRSVSLYYTGEK 91
Score = 49.3 bits (117), Expect = 2e-08
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 22/108 (20%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
S + L L ++T+++L+ +F I
Sbjct: 9 TSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIR--------------------LVSQ 48
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
SKGI ++ F +AE ++E G +G +++ + G
Sbjct: 49 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG--RSVSLYYTGEKGGT 94
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 57.1 bits (137), Expect = 3e-11
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKV-----VRDPQTYKCKGFGFVCMTNYDEAVF 328
++V N+ + + F + + V Q + K F F+ + DE
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 329 AIQSLNGYALGDRLLQVSF-KTHKPLP 354
A+ +G + L++ ++PLP
Sbjct: 64 AMA-FDGIIFQGQSLKIRRPHDYQPLP 89
Score = 50.5 bits (120), Expect = 7e-09
Identities = 13/81 (16%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKL-----IRDKTTAQSLGYGFVNYYRTEDAER 83
L V +P +T+E + F++ + + Q + F+ + ++ +
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 84 AIIELNGLKLQNKSIKVSYAR 104
A+ +G+ Q +S+K+
Sbjct: 64 AMA-FDGIIFQGQSLKIRRPH 83
Score = 42.8 bits (100), Expect = 3e-06
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 13/93 (13%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
LYV +P +T+E + + F + V + K F+
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNP----VLAVQINQ------DKNFAFL 53
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
F E AM +G I +G + + ++ +
Sbjct: 54 EFRSVDETTQAMA-FDGIIFQG--QSLKIRRPH 83
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 56.7 bits (136), Expect = 5e-11
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 7/96 (7%)
Query: 20 SDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTE 79
SDV E + + + +E L + G+++ +++ T S G F + E
Sbjct: 3 SDVTE-GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 61
Query: 80 DAERAIIELN------GLKLQNKSIKVSYARPSSEA 109
A++ + + GLKL + +KV A EA
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
Score = 47.1 bits (111), Expect = 1e-07
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 271 GWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAI 330
G +F+ NL+ ++E+ L ++ FG ++ V+VV P T KG F + A +
Sbjct: 8 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 67
Query: 331 QSLN------GYALGDRLLQVSFKTHKP 352
+ + G L R L+V +
Sbjct: 68 AAASLEAEGGGLKLDGRQLKVDLAVTRD 95
Score = 44.4 bits (104), Expect = 1e-06
Identities = 15/106 (14%), Positives = 35/106 (33%), Gaps = 19/106 (17%)
Query: 107 SEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166
S+ + +++ L +E L + + +G + R++ +
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPD---------------TE 47
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEGASE----PITVKFANS 208
SKG F +F A+ + + G + + V A +
Sbjct: 48 HSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVT 93
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 55.7 bits (134), Expect = 6e-11
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
+ V + +E+++ F GEVES +L D T + G+ F+ + E ++ +E
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKI-MEK 60
Query: 89 NGLKLQNKSIKVSYA 103
+ ++ A
Sbjct: 61 KYHNVGLSKCEIKVA 75
Score = 53.8 bits (129), Expect = 2e-10
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV L+P+T + + + FG FG V+++++ D +T K +GF F+ + ++
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-K 60
Query: 334 NGYALGDRLLQV 345
+ +G ++
Sbjct: 61 KYHNVGLSKCEI 72
Score = 47.7 bits (113), Expect = 4e-08
Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 18/92 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
++V GL +E + F +G + + + D +G F+
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNK---------------TNKRRGFCFI 46
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
F + + M++ + +K A
Sbjct: 47 TFKEEEPVKKIMEKKYHNV---GLSKCEIKVA 75
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 57.2 bits (137), Expect = 8e-11
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 3 KHEEMYNTTQSHRSTYQSDVN-EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRD 61
+ +++ Q H Q + + NL+VNY+P T+ + +L+ LF G +ES K++ D
Sbjct: 18 QLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCD 77
Query: 62 KTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE------AIKRANL 115
+ T QS GYGFV + A++AI LNG + NK +KV+ A + A+ N
Sbjct: 78 RETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGNG 137
Query: 116 YV 117
Y+
Sbjct: 138 YL 139
Score = 48.7 bits (115), Expect = 8e-08
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V + ++ L QLF +G +++VK+V D +T + +G+GFV + A AI L
Sbjct: 45 LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
NG+ + ++ L+V+ P
Sbjct: 105 NGFNILNKRLKVALAASGHQRP 126
Score = 44.1 bits (103), Expect = 3e-06
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 19/119 (15%)
Query: 94 QNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASEN 153
Q + I + P + ++ NL V+ +P + + L LF YG I + +I+CD+ ++
Sbjct: 26 QQQHIPPTQMNPEPDVLR--NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQS 83
Query: 154 VRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
FV+F A+ A+ LNG + + V A S R
Sbjct: 84 RGYG---------------FVKFQSGSSAQQAIAGLNGFNILN--KRLKVALAASGHQR 125
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 56.2 bits (135), Expect = 9e-11
Identities = 11/74 (14%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ + E + V ++ +G V+ + V + G +V ++A A+ L
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDL 88
Query: 334 NGYALGDRLLQVSF 347
N + +
Sbjct: 89 NNRWFNGQPIHAEL 102
Score = 53.9 bits (129), Expect = 6e-10
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 2/96 (2%)
Query: 7 MYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQ 66
+Y Q+ + + S++ + +E + GEVE + +
Sbjct: 9 IYRNPQNSSQSADGLRSAV-SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DH 66
Query: 67 SLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSY 102
+G +V + R EDAE+A+I+LN + I
Sbjct: 67 LVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
Score = 44.3 bits (104), Expect = 1e-06
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISK 169
+++ + +E + YG + + +
Sbjct: 25 SAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDH----------------LV 68
Query: 170 GIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
G +V+F + +AE A+ +LN G +PI + SP
Sbjct: 69 GNVYVKFRREEDAEKAVIDLNNRWFNG--QPIHAEL--SP 104
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 55.8 bits (134), Expect = 1e-10
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 39 TQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGF--VNYYRTEDAERAIIELNGLKLQNK 96
E+++ S G V+S ++ R + G G V + D ++A+ L G K N+
Sbjct: 27 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANR 86
Query: 97 SIKVSYARPS 106
+ Y P
Sbjct: 87 VVVTKYCDPD 96
Score = 44.6 bits (105), Expect = 9e-07
Identities = 11/72 (15%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 278 NLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMT--NYDEAVFAIQSLNG 335
+ E + +G V+++++ R + G G + + + + A+Q L G
Sbjct: 21 DEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 80
Query: 336 YALGDRLLQVSF 347
+R++ +
Sbjct: 81 RKFANRVVVTKY 92
Score = 34.2 bits (78), Expect = 0.004
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 15/83 (18%)
Query: 125 TQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFVRFNQHIEAEH 184
ED+ + YG + + I + G FV F + +
Sbjct: 27 IVEDVRDECSKYGLVKSIEIPRPV-------------DGVEVPGCGKIFVEFTSVFDCQK 73
Query: 185 AMQELNGTIPEGASEPITVKFAN 207
AMQ L G + K+ +
Sbjct: 74 AMQGLTGRKFAN--RVVVTKYCD 94
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 55.9 bits (134), Expect = 1e-10
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 6/111 (5%)
Query: 26 NSNLIV-NYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERA 84
NS L+V N P+ +T + L LF G+V+ K++ +K V A+ A
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQLA 56
Query: 85 IIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRP 135
+ LNG KL K I+++ ++ + + R GL K L +P
Sbjct: 57 MSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKP 107
Score = 49.4 bits (117), Expect = 2e-08
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 274 IFVYNLAPE-TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
+ V NL PE L+ LFG +G VQ VK+ + K V M + ++A A+
Sbjct: 5 LLVSNLNPERVTPQSLFILFGVYGDVQRVKI-----LFNKKENALVQMADGNQAQLAMSH 59
Query: 333 LNGYALGDRLLQVSFKTHKPLPP 355
LNG+ L + ++++ H+ +
Sbjct: 60 LNGHKLHGKPIRITLSKHQNVQL 82
Score = 35.1 bits (80), Expect = 0.002
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 23/101 (22%)
Query: 115 LYVSGL-PKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
L VS L P+ +T + L LF YG + +IL +K
Sbjct: 5 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK--------------------ENAL 44
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAK 214
V+ +A+ AM LNG G +PI + + +
Sbjct: 45 VQMADGNQAQLAMSHLNGHKLHG--KPIRITLSKHQNVQLP 83
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 55.0 bits (132), Expect = 1e-10
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
EQ L + + T E L+ F G + C ++RD T +S G+GFV Y E+ +
Sbjct: 4 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA 63
Query: 84 AIIELNGLKLQNKSIKVSYA 103
A + K+ + ++ A
Sbjct: 64 A-MNARPHKVDGRVVEPKRA 82
Score = 51.2 bits (122), Expect = 3e-09
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+F+ L+ ET D L F +G + + V+RDP T + +GFGFV +E A+
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-A 67
Query: 334 NGYALGDRLLQV 345
+ + R+++
Sbjct: 68 RPHKVDGRVVEP 79
Score = 45.8 bits (108), Expect = 2e-07
Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L++ GL T E L + F +GT+ ++ D + S+G GFV
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN---------------TKRSRGFGFV 53
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
+ E + AM +G + K A S
Sbjct: 54 TYATVEEVDAAM-NARPHKVDG--RVVEPKRAVS 84
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 55.2 bits (132), Expect = 2e-10
Identities = 10/79 (12%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+ ++ T+ + + LF + + + + + +N+ A A +
Sbjct: 11 CVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARL 64
Query: 87 ELNGLKLQNKSIKVSYARP 105
L+ + K +K+ +A+
Sbjct: 65 RLHKTEFLGKEMKLYFAQT 83
Score = 42.5 bits (99), Expect = 7e-06
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 23/114 (20%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
S + + T+ E+LFR Y T +
Sbjct: 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF------------------- 43
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAA 218
S + F+ + A A L+ T G + + + FA + + LA
Sbjct: 44 --KSFKRVRINFSNPLSAADARLRLHKTEFLG--KEMKLYFAQTLHIGSSHLAP 93
Score = 41.3 bits (96), Expect = 1e-05
Identities = 8/85 (9%), Positives = 20/85 (23%), Gaps = 11/85 (12%)
Query: 273 CIFVYNLAPE-----TEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
+ + LF + + +K + +N A
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY------FKSFKRVRINFSNPLSAA 60
Query: 328 FAIQSLNGYALGDRLLQVSFKTHKP 352
A L+ + +++ F
Sbjct: 61 DARLRLHKTEFLGKEMKLYFAQTLH 85
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 54.4 bits (130), Expect = 2e-10
Identities = 23/80 (28%), Positives = 46/80 (57%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L V + ++ L+ +FS G++ +++D+ T +S G+GFV + +DA+ A++ +
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 89 NGLKLQNKSIKVSYARPSSE 108
NG + + I+V A SS+
Sbjct: 68 NGKSVDGRQIRVDQAGKSSD 87
Score = 53.2 bits (127), Expect = 7e-10
Identities = 26/79 (32%), Positives = 45/79 (56%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV L+ +T + L Q+F +G + V VV+D +T + +GFGFV N D+A A+ ++
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG ++ R ++V
Sbjct: 68 NGKSVDGRQIRVDQAGKSS 86
Score = 45.5 bits (107), Expect = 3e-07
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 20/107 (18%)
Query: 106 SSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIP 165
+S+ K L+V GL ++ LE +F YG I ++ D+
Sbjct: 2 ASDEGK---LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRE---------------T 43
Query: 166 QISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
Q S+G GFV F +A+ AM +NG +G I V A +
Sbjct: 44 QRSRGFGFVTFENIDDAKDAMMAMNGKSVDG--RQIRVDQAGKSSDN 88
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 54.3 bits (130), Expect = 3e-10
Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+ +S + V MT++EL+ FS G+V + + + FV + + A+
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-----AFAFVTFADDQIAQ 56
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSEA 109
L ++ S+ +S A P +
Sbjct: 57 SLC--GEDLIIKGISVHISNAEPKHNS 81
Score = 46.2 bits (109), Expect = 2e-07
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
+FV + ++ L + F +G V +V + F FV + A
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVF-----IPKPFRAFAFVTFADDQIAQSLCG- 60
Query: 333 LNGYALGDRLLQVSFKTHKP 352
+ + +S K
Sbjct: 61 -EDLIIKGISVHISNAEPKH 79
Score = 41.2 bits (96), Expect = 1e-05
Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 24/102 (23%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
+ ++V MT+++L F YG ++ I
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR--------------------AFA 45
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAK 214
FV F A+ I +G + + A
Sbjct: 46 FVTFADDQIAQSLCG--EDLIIKG--ISVHISNAEPKHNSNS 83
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 53.2 bits (127), Expect = 5e-10
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
+ V + T E+++H F G+V+ L+ DKTT + G+GFV + + E+ E+
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKV-CEI 60
Query: 89 NGLKLQNKSIKVSYA 103
+ ++ NK ++ A
Sbjct: 61 HFHEINNKMVECKKA 75
Score = 50.9 bits (121), Expect = 3e-09
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV L+ T + F FG V + ++ D T + +GFGFV + D + +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I 60
Query: 334 NGYALGDRLLQVSF 347
+ + + +++++
Sbjct: 61 HFHEINNKMVECKK 74
Score = 43.6 bits (102), Expect = 1e-06
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
++V GL + T ED+++ F +G + + ++ DK +G GFV
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKT---------------TNRHRGFGFV 46
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
F E E++ + + K A
Sbjct: 47 TFESEDIVEKVC-EIHFHEINN--KMVECKKA 75
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 53.6 bits (128), Expect = 7e-10
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV L T D L + F FG ++ V+ D QT K +G+GFV M + A A +
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72
Query: 334 NGYALGDRLLQVSFKTHKPLP 354
N + R V+ P
Sbjct: 73 NPI-IDGRKANVNLAYLGAKP 92
Score = 52.4 bits (125), Expect = 2e-09
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+ + + V +P T L+ F G++E +I D+ T +S GYGFV AE
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 83 RAIIELNGLKLQNKSIKVSYARPSS 107
RA + N + + V+ A +
Sbjct: 67 RACKDPNP-IIDGRKANVNLAYLGA 90
Score = 46.3 bits (109), Expect = 2e-07
Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 18/97 (18%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
++V GLP H T L F +G I + ++ D+ S+G GF
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ---------------TGKSRGYGF 56
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPA 210
V AE A ++ N I V A A
Sbjct: 57 VTMADRAAAERACKDPNPII---DGRKANVNLAYLGA 90
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 52.7 bits (126), Expect = 8e-10
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 38 MTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKS 97
MT L+ FS G + + + FV Y + E A++A+ ELNG ++++
Sbjct: 15 MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAVAELNGTQVESVQ 68
Query: 98 IKVSYARP 105
+KV+ AR
Sbjct: 69 LKVNIARK 76
Score = 52.3 bits (125), Expect = 1e-09
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
G ++VY + +L F PFG + ++ + FV + A A
Sbjct: 4 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQA 55
Query: 330 IQSLNGYALGDRLLQVSFKTHKPL 353
+ LNG + L+V+ +P+
Sbjct: 56 VAELNGTQVESVQLKVNIARKQPM 79
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 52.5 bits (125), Expect = 2e-09
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 21 DVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTED 80
V+ ++ V +P T+E+L+ +FS VG V S +L+ D+ T + GYGF Y E
Sbjct: 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQET 62
Query: 81 AERAIIELNGLKLQNKSIKVSYARPSSEAIKRANL 115
A A+ LNG + ++++V A + +L
Sbjct: 63 ALSAMRNLNGREFSGRALRVDNAASEKNKEELKSL 97
Score = 50.1 bits (119), Expect = 1e-08
Identities = 24/79 (30%), Positives = 41/79 (51%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+FV N+ E + L +F G V + ++V D +T K KG+GF + + A+ A+++L
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 334 NGYALGDRLLQVSFKTHKP 352
NG R L+V +
Sbjct: 71 NGREFSGRALRVDNAASEK 89
Score = 45.5 bits (107), Expect = 5e-07
Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 18/110 (16%)
Query: 105 PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEI 164
P+ + R +++V +P T+E L+++F G +++ R++ D+
Sbjct: 2 PAVDRSLR-SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRE--------------- 45
Query: 165 PQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAK 214
KG GF + A AM+ LNG G + V A S + +
Sbjct: 46 TGKPKGYGFCEYQDQETALSAMRNLNGREFSG--RALRVDNAASEKNKEE 93
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 51.6 bits (123), Expect = 2e-09
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 27 SNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAII 86
+ L + + +T ++L+ LF + +++ GY FV+Y A RAI
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS------GYAFVDYPDQNWAIRAIE 55
Query: 87 ELNG-LKLQNKSIKVSYARPSSE 108
L+G ++L K ++V Y+
Sbjct: 56 TLSGKVELHGKIMEVDYSVSKKL 78
Score = 50.8 bits (121), Expect = 4e-09
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL+P + L QLFG + Q G+ FV + + A+ AI++L
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRK------LPLAGQVLLKSGYAFVDYPDQNWAIRAIETL 57
Query: 334 NG-YALGDRLLQVSFKTHK 351
+G L ++++V + K
Sbjct: 58 SGKVELHGKIMEVDYSVSK 76
Score = 47.8 bits (113), Expect = 4e-08
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 22/99 (22%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
LY+ L +T +DL LF + ++L G FV
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---------------------SGYAFV 42
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRA 213
+ A A++ L+G + E + + V ++ S R+
Sbjct: 43 DYPDQNWAIRAIETLSGKV-ELHGKIMEVDYSVSKKLRS 80
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 51.7 bits (123), Expect = 2e-09
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 274 IFVYNLAPETEDNVLWQLF---GPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYD---EAV 327
+FV L+ D + + G FG + V + +G Y +A+
Sbjct: 11 VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDAL 70
Query: 328 FAIQSLNGYALGDRLLQVS 346
AIQ +N + R L+ S
Sbjct: 71 RAIQCVNNVVVDGRTLKAS 89
Score = 49.0 bits (116), Expect = 2e-08
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 25 QNSNLIVNYVPQTMTQEELQHLF---SSVGEVESCKLIRDKTTAQS---LGYGFVNYYRT 78
Q + + V + Q + E+ G++ + + A S +V Y R+
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 66
Query: 79 EDAERAIIELNGLKLQNKSIKVS 101
EDA RAI +N + + +++K S
Sbjct: 67 EDALRAIQCVNNVVVDGRTLKAS 89
Score = 41.3 bits (96), Expect = 1e-05
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 110 IKRANLYVSGLPKHMTQEDLENLFR---PYGTIITSRILCDKMASENVRSFVSGTPEIPQ 166
+++ ++V GL + + ++ +G I I + + Q
Sbjct: 6 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGS------------Q 53
Query: 167 ISKGIGFVRFNQHIEAEHAMQELNGTIPEG 196
+V + + +A A+Q +N + +G
Sbjct: 54 GPSASAYVTYIRSEDALRAIQCVNNVVVDG 83
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 51.4 bits (122), Expect = 4e-09
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT 78
+ DVN + +P ++T+ ++ + E+ + Q LG V +
Sbjct: 1 EGDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNE 60
Query: 79 EDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRAN 114
+DA ++ L+ KL + V N
Sbjct: 61 DDARKS-ERLHRKKLNGREAFVHVVTLEDMREIEKN 95
Score = 45.6 bits (107), Expect = 4e-07
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 268 HGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAV 327
+ + C + N+ + Q +N V + G V N D+A
Sbjct: 5 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDAR 64
Query: 328 FAIQSLNGYALGDRLLQVSFKTHK 351
+ + L+ L R V T +
Sbjct: 65 KSER-LHRKKLNGREAFVHVVTLE 87
Score = 37.5 bits (86), Expect = 3e-04
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 18/101 (17%)
Query: 112 RANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGI 171
+ +++ +P +T+ D+ + + G
Sbjct: 8 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN---------------NGQGLGQ 52
Query: 172 GFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
V+F +A + L+ G V R
Sbjct: 53 ALVQFKNEDDARKSE-RLHRKKLNG--REAFVHVVTLEDMR 90
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 50.5 bits (120), Expect = 5e-09
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I V NL ++ + L + ++ + K FV + N ++A AIQ
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYD-------LKYCYVDRNKRTAFVTLLNGEQAQNAIQMF 60
Query: 334 NGYALGDRLLQVSFKTHKPL 353
+ Y+ + L V + L
Sbjct: 61 HQYSFRGKDLIVQLQPTDAL 80
Score = 46.7 bits (110), Expect = 1e-07
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+S ++V +PQ +E+ L ++ FV E A+ AI
Sbjct: 5 SSGILVKNLPQDSNCQEVHDLLKDYDLKYCYV-------DRNKRTAFVTLLNGEQAQNAI 57
Query: 86 IELNGLKLQNKSIKVSYARPSSEA 109
+ + K + V +
Sbjct: 58 QMFHQYSFRGKDLIVQLQPTDALL 81
Score = 43.2 bits (101), Expect = 2e-06
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 24/98 (24%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
+ + V LP+ +++ +L + Y +K
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYC----------------------YVDRNKRTA 43
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPA 210
FV +A++A+Q + G + + V+ + A
Sbjct: 44 FVTLLNGEQAQNAIQMFHQYSFRG--KDLIVQLQPTDA 79
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.9 bits (121), Expect = 6e-09
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 1/86 (1%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+ +P +T+E ++ F + + G+G+ + +
Sbjct: 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLL 71
Query: 83 RAIIELNGLKLQNKSIKVSYARPSSE 108
+ + LN L NK I+V A + +
Sbjct: 72 -SALSLNEESLGNKRIRVDVADQAQD 96
Score = 49.0 bits (116), Expect = 3e-08
Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
F+ NL + + + + F + KGFG+ + D + + SL
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLL-SALSL 76
Query: 334 NGYALGDRLLQVSFKTHKP 352
N +LG++ ++V
Sbjct: 77 NEESLGNKRIRVDVADQAQ 95
Score = 41.3 bits (96), Expect = 1e-05
Identities = 17/98 (17%), Positives = 29/98 (29%), Gaps = 18/98 (18%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
++ LP +T+E ++ FR P+ KG G+
Sbjct: 18 AFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSN---------------PERLKGFGYA 62
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGR 212
F A+ LN + I V A+ +
Sbjct: 63 EFEDLDSLLSAL-SLNEESLGN--KRIRVDVADQAQDK 97
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 50.2 bits (119), Expect = 1e-08
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 24/119 (20%)
Query: 93 LQNKSIKVSYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASE 152
L+ ++ A+ + NLY+S LP M +++LEN+ +P+G +I++RIL D
Sbjct: 1 LKASGVQAQMAKQQEQ--DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSS--- 55
Query: 153 NVRSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEG------ASEPITVKF 205
S+G+GF R + E + NG + +EP+ KF
Sbjct: 56 -------------GTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKF 101
Score = 46.3 bits (109), Expect = 2e-07
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+ +NL ++ +P +M ++EL+++ G+V S + I ++ S G GF TE E
Sbjct: 15 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTR-ILRDSSGTSRGVGFARMESTEKCE 73
Query: 83 RAIIELNGLKLQNKSIKVSYARP 105
I NG ++ + P
Sbjct: 74 AVIGHFNGKFIKTPPGVSAPTEP 96
Score = 40.5 bits (94), Expect = 2e-05
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ NL ++ L + PFG + + +G GF M + ++ I
Sbjct: 21 LYISNLPLSMDEQELENMLKPFG-QVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 79
Query: 334 NGYALGDRLLQVSFKTHKPL 353
NG + + +PL
Sbjct: 80 NGKFIKTPPGVSAPT--EPL 97
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 50.2 bits (119), Expect = 1e-08
Identities = 16/88 (18%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 19 QSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRT 78
S + + + +P ++EE+ FS + V + + +S G FV +
Sbjct: 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQ 67
Query: 79 EDAERAIIELNGLKLQNKSIKVSYARPS 106
E AE+A+ + ++ ++ I++ + +
Sbjct: 68 EIAEKALK-KHKERIGHRYIEIFKSSRA 94
Score = 27.9 bits (61), Expect = 0.70
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 18/93 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+ + GLP ++E++ F + L S G FV
Sbjct: 18 VRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDF---------------QGRSTGEAFV 62
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
+F AE A+++ I I + ++
Sbjct: 63 QFASQEIAEKALKKHKERI---GHRYIEIFKSS 92
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 49.4 bits (117), Expect = 1e-08
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 271 GWCIFVYNLAPE-TEDNVLWQLFGPFGAVQNVKVVRD-PQTYKCKGFGFVCMTNYDEAVF 328
G I + NL+ E ++N+L + F FG+++ + + + F+ N D A
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 329 AIQSLNGYALGDRLLQVSFKTHKP 352
A+Q +N LG+R + VS KP
Sbjct: 64 ALQ-MNRSLLGNREISVSLADKKP 86
Score = 47.4 bits (112), Expect = 6e-08
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 25 QNSNLIVNYVPQTMTQEE-LQHLFSSVGEVESCKLIRD-KTTAQSLGYGFVNYYRTEDAE 82
+ +++ + + E L+ F G +E + K + + F+ + + AE
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 83 RAIIELNGLKLQNKSIKVSYARP 105
RA+ ++N L N+ I VS A
Sbjct: 63 RAL-QMNRSLLGNREISVSLADK 84
Score = 39.3 bits (91), Expect = 5e-05
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 18/99 (18%)
Query: 110 IKRANLYVSGLPKHMTQED-LENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQIS 168
++ + + L + E+ L F +G+I I +
Sbjct: 2 LEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCA---------- 51
Query: 169 KGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
F+ F AE A+ ++N ++ I+V A+
Sbjct: 52 ----FMVFENKDSAERAL-QMNRSLLGN--REISVSLAD 83
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 49.4 bits (117), Expect = 2e-08
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 13 SHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGF 72
S S+ + ++V+ +P + + ++L+ G+V + +D G
Sbjct: 2 SSGSSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MGM 54
Query: 73 VNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSE 108
V Y R ED E A+ +L+ K ++ + SY R E
Sbjct: 55 VEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPE 90
Score = 44.0 bits (103), Expect = 1e-06
Identities = 13/78 (16%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
S + + V L P L G V + G G V ++ +A
Sbjct: 14 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCY-------ADVQKDGMGMVEYLRKEDMEYA 66
Query: 330 IQSLNGYALGDRLLQVSF 347
++ L+ + S+
Sbjct: 67 LRKLDDTKFRSHEGETSY 84
Score = 36.7 bits (84), Expect = 5e-04
Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 24/101 (23%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+ VSGLP + +DL++ R G + + + D M V
Sbjct: 18 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMG----------------------MV 55
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKA 215
+ + + E+A+++L+ T + R+
Sbjct: 56 EYLRKEDMEYALRKLDDTKFRS--HEGETSYIRVYPERSSG 94
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 48.9 bits (116), Expect = 2e-08
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
IFV + +TE++ L F +G ++ ++++ D + K +GF FV + ++V I
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVIQ 63
Query: 334 NGYALGDRLLQV 345
+ + +V
Sbjct: 64 KYHTVNGHNCEV 75
Score = 47.8 bits (113), Expect = 4e-08
Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
+ V + + + L+ F G++E +++ D+ + + G+ FV + D+ I+
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFD-DHDSVDKIVIQ 63
Query: 89 NGLKLQNKSIKVSYA 103
+ + +V A
Sbjct: 64 KYHTVNGHNCEVRKA 78
Score = 41.2 bits (96), Expect = 9e-06
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 18/92 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
++V G+ + + L + F YG I I+ D+ +G FV
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRG---------------SGKKRGFAFV 49
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
F+ H ++ + G V+ A
Sbjct: 50 TFDDH-DSVDKIVIQKYHTVNG--HNCEVRKA 78
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 49.3 bits (117), Expect = 2e-08
Identities = 18/108 (16%), Positives = 48/108 (44%), Gaps = 21/108 (19%)
Query: 1 MMKHEEMYNTTQSHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIR 60
+++HE + + + +S ++ + +++ +L + G V++ +
Sbjct: 5 LLRHEGIETVSYATQSLVVANGG----------LGNGVSRNQLLPVLEKCGLVDALLMPP 54
Query: 61 DKTTAQSLGYGFVNYYRTEDAERAIIELNGLKL-----QNKSIKVSYA 103
+K Y F Y TE+++RA + LNG ++ Q ++ +++
Sbjct: 55 NKP------YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96
Score = 48.6 bits (115), Expect = 4e-08
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 22/104 (21%)
Query: 104 RPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
S A + + GL +++ L + G + + +K
Sbjct: 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP-------------- 57
Query: 164 IPQISKGIGFVRFNQHIEAEHAMQELNGT-IPEGASEPITVKFA 206
F R+ E++ A LNG + + + IT+
Sbjct: 58 -------YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94
Score = 44.3 bits (104), Expect = 1e-06
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 257 LNNSMLPPKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFG 316
+ +SL + L N L + G V + K +
Sbjct: 11 IETVSYATQSLV-----VANGGLGNGVSRNQLLPVLEKCGLVDAL------LMPPNKPYS 59
Query: 317 FVCMTNYDEAVFAIQSLNGYALGDRLLQ 344
F +E+ A +LNG + D L Q
Sbjct: 60 FARYRTTEESKRAYVTLNGKEVVDDLGQ 87
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 48.5 bits (115), Expect = 4e-08
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 29/114 (25%)
Query: 97 SIKVSYAR--PSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENV 154
S K+ Y + P++ L+V GL + + L F +G+I T +
Sbjct: 6 SGKIGYGKANPTT------RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS----- 54
Query: 155 RSFVSGTPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
++++ A+ A ++ G G + V FA S
Sbjct: 55 ----------------FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92
Score = 48.1 bits (114), Expect = 5e-08
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
++V L P T L + F FG+++ + K F ++ + D A A
Sbjct: 19 RLWVGGLGPNTSLAALAREFDRFGSIRTI------DHVKGDSFAYIQYESLDAAQAACAK 72
Query: 333 LNGYALG--DRLLQVSFKTHKP 352
+ G+ LG DR L+V F P
Sbjct: 73 MRGFPLGGPDRRLRVDFAKSGP 94
Score = 46.6 bits (110), Expect = 2e-07
Identities = 12/82 (14%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+ L V + + L F G + + ++ + + ++ Y + A+ A
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESLDAAQAAC 70
Query: 86 IELNGLKL--QNKSIKVSYARP 105
++ G L ++ ++V +A+
Sbjct: 71 AKMRGFPLGGPDRRLRVDFAKS 92
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 47.4 bits (112), Expect = 9e-08
Identities = 11/83 (13%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
+G C+ + L +N ++ F P ++ + V +++AV A
Sbjct: 14 TGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTG--EADVEFATHEDAVAA 71
Query: 330 IQSLNGYALGDRLLQVSFKTHKP 352
+ + + R +++ +
Sbjct: 72 MA-KDKANMQHRYVELFLNSTAG 93
Score = 34.0 bits (77), Expect = 0.005
Identities = 7/77 (9%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
+ + +P T+ ++ + FS + + + + + T + A +
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPMR-VHIEIGPDGRVTGEADVE--FATHEDAVAAMAK 74
Query: 89 NGLKLQNKSIKVSYARP 105
+ +Q++ +++
Sbjct: 75 DKANMQHRYVELFLNST 91
Score = 28.9 bits (64), Expect = 0.30
Identities = 11/101 (10%), Positives = 24/101 (23%), Gaps = 20/101 (19%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+++ GLP T+ D+ N F P + + T
Sbjct: 18 VHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATH------------ 65
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPAGRAKA 215
E A + + + + ++
Sbjct: 66 ------EDAVAAMAKDKANMQH--RYVELFLNSTAGTSGSG 98
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 45.9 bits (108), Expect = 2e-07
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
L + + T ++L L G++ S K I DKTT + GYGFV++ A++A+ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 89 NGLKLQNKSIK 99
+Q + K
Sbjct: 61 KASGVQAQMAK 71
Score = 45.5 bits (107), Expect = 2e-07
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ L P T D L +L P+G + + K + D T KCKG+GFV + A A+ +L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 334 NGYALGDRLLQ 344
+ ++ +
Sbjct: 61 KASGVQAQMAK 71
Score = 37.4 bits (86), Expect = 2e-04
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
LY+ GL T +DL L +PY + S + + KG GFV
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY---------------GKIVSTKAILDKTTNKCKGYGFV 45
Query: 175 RFNQHIEAEHAMQELNGTIPEG 196
F+ A+ A+ L + +
Sbjct: 46 DFDSPSAAQKAVTALKASGVQA 67
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 45.3 bits (107), Expect = 3e-07
Identities = 8/70 (11%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V+ + +L F +G + + + + + +A A+
Sbjct: 7 VTVFGFPQASASYIL-LQFAQYGNILKHVMSNT------GNWMHIRYQSKLQARKALS-K 58
Query: 334 NGYALGDRLL 343
+G G+ ++
Sbjct: 59 DGRIFGESIM 68
Score = 35.7 bits (82), Expect = 0.001
Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 9/74 (12%)
Query: 35 PQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQ 94
PQ L F+ G + + + + Y A +A + +G
Sbjct: 13 PQASASYILLQ-FAQYGNILKHVMSNTG------NWMHIRYQSKLQARKA-LSKDGRIFG 64
Query: 95 NKS-IKVSYARPSS 107
I V +
Sbjct: 65 ESIMIGVKPCIDKN 78
Score = 30.3 bits (68), Expect = 0.072
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 24/92 (26%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
+ V G P+ L F YG I+ +
Sbjct: 5 TWVTVFGFPQASASYILL-QFAQYGNILKHVMSNTG---------------------NWM 42
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVK 204
+R+ ++A A+ + G S I VK
Sbjct: 43 HIRYQSKLQARKALSKDGRIF--GESIMIGVK 72
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 44.7 bits (105), Expect = 7e-07
Identities = 8/79 (10%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 30 IVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELN 89
I+++ + +L L G + + ++ A + + A
Sbjct: 13 IMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEA----FIEMATTEDAQAAVDYYTTT 68
Query: 90 GLKLQNKSIKVSYARPSSE 108
+ K ++V ++
Sbjct: 69 PALVFGKPVRVHLSQKYKR 87
Score = 40.5 bits (94), Expect = 2e-05
Identities = 13/96 (13%), Positives = 26/96 (27%), Gaps = 22/96 (22%)
Query: 115 LYVSGLPK-HMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
+++ + + L L P+G I IL F
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN---------------------EAF 49
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
+ +A+ A+ T +P+ V +
Sbjct: 50 IEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 85
Score = 40.1 bits (93), Expect = 3e-05
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 273 CIFVYNLAP-ETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ 331
+ + + + L QL PFG + N F+ M ++A A+
Sbjct: 10 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHL------ILNKINEAFIEMATTEDAQAAVD 63
Query: 332 --SLNGYALGDRLLQVSF-KTHKPL 353
+ + + ++V + +K +
Sbjct: 64 YYTTTPALVFGKPVRVHLSQKYKRI 88
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 44.6 bits (104), Expect = 8e-07
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 24 EQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAER 83
NL + + + EL+ S + ++ +T + +G+V++ ED E+
Sbjct: 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT-GTNRKFGYVDFESAEDLEK 69
Query: 84 AIIELNGLKLQNKSIKVSYARP 105
A+ L GLK+ IK+ +
Sbjct: 70 ALE-LTGLKVFGNEIKLEKPKG 90
Score = 35.3 bits (80), Expect = 0.002
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 19/108 (17%)
Query: 101 SYARPSSEAIKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSG 160
S+ SE+ NL++ L + + +L+ ++ +
Sbjct: 2 SHMVEGSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRT----------- 50
Query: 161 TPEIPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
++ G+V F + E A++ L G G I ++
Sbjct: 51 -----GTNRKFGYVDFESAEDLEKALE-LTGLKVFG--NEIKLEKPKG 90
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 42.5 bits (99), Expect = 3e-06
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
N L + +P+ + L LF+ + +L+ ++ FV + + A
Sbjct: 8 NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFTTELQSNAAK 62
Query: 86 IELNGLKL-QNKSIKVSYAR 104
L G K+ ++K+++A+
Sbjct: 63 EALQGFKITPTHAMKITFAK 82
Score = 33.3 bits (75), Expect = 0.006
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 21/92 (22%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
L+++ LP+ + L LF + R++ ++ I FV
Sbjct: 11 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRH--------------------DIAFV 50
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFA 206
F +++ A + L G + + + FA
Sbjct: 51 EFTTELQSNAAKEALQGF-KITPTHAMKITFA 81
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 43.0 bits (100), Expect = 5e-06
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 264 PKSLHGSGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNY 323
+S H +G+C+++ L E E+ + F V++ + K G GFV N
Sbjct: 11 SRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNE 70
Query: 324 DEAVFAIQSLNGYALGDRLLQVSFKTHK 351
+ A+ + +G+R +QV T K
Sbjct: 71 ADYKAALC-RHKQYMGNRFIQVHPITKK 97
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 42.0 bits (98), Expect = 6e-06
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
++ L ++ +P ++++E+L+ LFSS G V K + E+A +A+
Sbjct: 10 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDR----KMALIQMGSVEEAVQAL 65
Query: 86 IELNGLKL-QNKSIKVSYARPS 106
I+L+ L +N ++VS+++ +
Sbjct: 66 IDLHNHDLGENHHLRVSFSKST 87
Score = 40.1 bits (93), Expect = 3e-05
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
+ + N+ P + L LF G V V K + + M + +EAV A+
Sbjct: 12 TLHLSNIPPSVSEEDLKVLFSSNGGV----VKGFKFFQKDRKMALIQMGSVEEAVQALID 67
Query: 333 LNGYALGD-RLLQVSF 347
L+ + LG+ L+VSF
Sbjct: 68 LHNHDLGENHHLRVSF 83
Score = 37.0 bits (85), Expect = 3e-04
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 20/97 (20%)
Query: 113 ANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIG 172
A L++S +P +++EDL+ LF G ++ K
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA------------------- 51
Query: 173 FVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANSP 209
++ EA A+ +L+ G + + V F+ S
Sbjct: 52 LIQMGSVEEAVQALIDLHNH-DLGENHHLRVSFSKST 87
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 42.1 bits (98), Expect = 8e-06
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 21/94 (22%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
++V GL + + + DL +GTI ++ K V
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR---------------------QALV 56
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
F A+ + A + ++ S
Sbjct: 57 EFENIDSAKECVTFAADVPVYIAGQQAFFNYSTS 90
Score = 41.7 bits (97), Expect = 1e-05
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQS 332
+ V L + L + FG + V + K V N D A +
Sbjct: 17 VVHVRGLCESVVEADLVEALEKFGTICYVMM------MPFKRQALVEFENIDSAKECVTF 70
Query: 333 L--NGYALGDRLLQVSFKTHKPL 353
+ + ++ T K +
Sbjct: 71 AADVPVYIAGQQAFFNYSTSKRI 93
Score = 39.8 bits (92), Expect = 4e-05
Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 8/96 (8%)
Query: 13 SHRSTYQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGF 72
S S+ + + V + +++ + +L G + ++ K A
Sbjct: 2 SSGSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQA------L 55
Query: 73 VNYYRTEDAERAIIEL--NGLKLQNKSIKVSYARPS 106
V + + A+ + + + + +Y+
Sbjct: 56 VEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 41.5 bits (96), Expect = 1e-05
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAI 85
+ ++ +P E+Q FS G + L V + +A +A
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG------ITAIVEFLEPLEARKAF 63
Query: 86 IELNGLKLQNKSIKVSYARPSS 107
L K + + + +A
Sbjct: 64 RHLAYSKFHHVPLYLEWAPIGV 85
Score = 36.5 bits (83), Expect = 7e-04
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 6/86 (6%)
Query: 270 SGWCIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFA 329
S I NL T + + F FG++ V + V EA A
Sbjct: 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL------LPEGGITAIVEFLEPLEARKA 62
Query: 330 IQSLNGYALGDRLLQVSFKTHKPLPP 355
+ L L + +
Sbjct: 63 FRHLAYSKFHHVPLYLEWAPIGVFGA 88
Score = 34.5 bits (78), Expect = 0.004
Identities = 15/105 (14%), Positives = 33/105 (31%), Gaps = 25/105 (23%)
Query: 106 SSEAIKRAN--LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPE 163
SS + R+ + LP +++ F +G++ +
Sbjct: 2 SSGSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG---------------- 45
Query: 164 IPQISKGIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
V F + +EA A + L + P+ +++A
Sbjct: 46 -----GITAIVEFLEPLEARKAFRHLAYSKFHHV--PLYLEWAPI 83
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 39.3 bits (91), Expect = 4e-05
Identities = 16/98 (16%), Positives = 35/98 (35%), Gaps = 19/98 (19%)
Query: 110 IKRANLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISK 169
+K ++Y+ G P T +D++ G ++ ++ + K
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH----------------KAFK 47
Query: 170 GIGFVRFNQHIEAEHAMQELNGTIPEGASEPITVKFAN 207
G FV F+ A+ + E G + + + F +
Sbjct: 48 GSIFVVFDSIESAKKFV-ETPGQKYKE--TDLLILFKD 82
Score = 38.6 bits (89), Expect = 8e-05
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 2/75 (2%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+++ + + + + G V N+++ R FV + + A ++
Sbjct: 9 VYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG-SIFVVFDSIESAKKFVE-T 66
Query: 334 NGYALGDRLLQVSFK 348
G + L + FK
Sbjct: 67 PGQKYKETDLLILFK 81
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.7 bits (89), Expect = 8e-05
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 273 CIFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQ- 331
+ + L E + + L V + K K F+ + + A+ +
Sbjct: 10 VLHIRKLPGEVTETEVIALG------LPFGKVTNILMLKGKNQAFLELATEEAAITMVNY 63
Query: 332 -SLNGYALGDRLLQVSFKTHKPL 353
S L ++ + + + HK L
Sbjct: 64 YSAVTPHLRNQPIYIQYSNHKEL 86
Score = 37.5 bits (86), Expect = 2e-04
Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 8/85 (9%)
Query: 23 NEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAE 82
+ L + +P +T+ E+ L + + + F+ E A
Sbjct: 5 GAPSRVLHIRKLPGEVTETEVIALG------LPFGKVTNILMLKGKNQAFLELATEEAAI 58
Query: 83 RAI--IELNGLKLQNKSIKVSYARP 105
+ L+N+ I + Y+
Sbjct: 59 TMVNYYSAVTPHLRNQPIYIQYSNH 83
Score = 36.0 bits (82), Expect = 7e-04
Identities = 15/95 (15%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
L++ LP +T+ ++ L P+G + +L K F
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN---------------------QAF 48
Query: 174 VRFNQHIEAEHAMQELNGTIPEGASEPITVKFANS 208
+ A + + P ++PI ++++N
Sbjct: 49 LELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNH 83
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 38.7 bits (89), Expect = 9e-05
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 7/82 (8%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V L P L G V G G V ++ +A++ L
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCY-------ADVYRDGTGVVEFVRKEDMTYAVRKL 55
Query: 334 NGYALGDRLLQVSFKTHKPLPP 355
+ + ++ K P
Sbjct: 56 DNTKFRSHEGETAYIRVKVDGP 77
Score = 37.9 bits (87), Expect = 2e-04
Identities = 17/84 (20%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 29 LIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIEL 88
++V+ +P + + ++L+ G+V + RD G V + R ED A+ +L
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG-------TGVVEFVRKEDMTYAVRKL 55
Query: 89 NGLKLQNKSIKVSYARPSSEAIKR 112
+ K ++ + +Y R + +
Sbjct: 56 DNTKFRSHEGETAYIRVKVDGPRS 79
Score = 27.5 bits (60), Expect = 0.72
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 22/82 (26%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+ VSGLP + +DL++ R G + + + D G V
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGT----------------------GVV 40
Query: 175 RFNQHIEAEHAMQELNGTIPEG 196
F + + +A+++L+ T
Sbjct: 41 EFVRKEDMTYAVRKLDNTKFRS 62
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 38.6 bits (89), Expect = 1e-04
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 5/74 (6%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
F +L +T L LF G ++ + VR + EA+ +
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL-----FKEKAKEALGKAKDA 68
Query: 334 NGYALGDRLLQVSF 347
N L R +V++
Sbjct: 69 NNGNLQLRNKEVTW 82
Score = 32.9 bits (74), Expect = 0.018
Identities = 14/117 (11%), Positives = 27/117 (23%), Gaps = 24/117 (20%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGF 173
+ L +EDL LF +G I + G
Sbjct: 13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---------------------AKEGI 51
Query: 174 VRFNQHIE-AEHAMQELNGTIPEGASEPITVKFANSPAGRAKALAANLNAQAAAMRH 229
+ F + + A ++ N + V + K + +
Sbjct: 52 ILFKEKAKEALGKAKDANNGNLQL--RNKEVTWEVLEGEVEKEALKKIIEDQQESLN 106
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 75
Score = 37.5 bits (86), Expect = 2e-04
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
+ V NL N +++ F G + +V V + F + YD A+ +
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFR--FARIEFARYDGALA-AITK 59
Query: 334 NGYALGDRLLQVSFKT 349
+G + VS T
Sbjct: 60 THKVVGQNEIIVSHLT 75
Score = 29.0 bits (64), Expect = 0.15
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 114 NLYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKM 149
+ V LPK Q + F+ G II +
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK 37
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 34.9 bits (79), Expect = 0.002
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 274 IFVYNLAPETEDNVLWQLFGPFGAVQNVKVVRDPQTYKCKGFGFVCMTNYDEAVFAIQSL 333
I + L + + + L + ++ K KG FV + N ++A AI +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY-------ELKYCFVDKYKGTAFVTLLNGEQAEAAINTF 53
Query: 334 NGYALGDRLLQVSFKTHKPL 353
+ L +R L V + L
Sbjct: 54 HQSRLRERELSVQLQPTDAL 73
Score = 33.4 bits (75), Expect = 0.006
Identities = 14/96 (14%), Positives = 29/96 (30%), Gaps = 24/96 (25%)
Query: 115 LYVSGLPKHMTQEDLENLFRPYGTIITSRILCDKMASENVRSFVSGTPEIPQISKGIGFV 174
+ + GLP +T +++ +L Y A FV
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTA----------------------FV 38
Query: 175 RFNQHIEAEHAMQELNGTIPEGASEPITVKFANSPA 210
+AE A+ + + ++V+ + A
Sbjct: 39 TLLNGEQAEAAINTFHQSRLRE--RELSVQLQPTDA 72
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 31.1 bits (69), Expect = 0.050
Identities = 14/95 (14%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 18 YQSDVNEQNSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYR 77
+ + N + + L G++++ L+R K F+
Sbjct: 11 FDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK------SQAFIEMET 64
Query: 78 TEDAERAI--IELNGLKLQNKSIKVSYARPSSEAI 110
EDA + L Q + +KV + + +
Sbjct: 65 REDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLV 99
>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 193
Score = 30.3 bits (68), Expect = 0.22
Identities = 30/155 (19%), Positives = 43/155 (27%), Gaps = 26/155 (16%)
Query: 72 FVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPSSEAIKRANLYVSGL--------PKH 123
N+ +D E +NG SI + A + A K AN
Sbjct: 45 HANFGTKKDFEDLYTPVNG------SIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTK 98
Query: 124 MTQEDLENLFRPYGTIITSRILCDKMAS----ENVRSFVSGTPEIPQISKGIGFVRFNQH 179
+ E F + + T S + S SG P IP + I
Sbjct: 99 FPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIP--VQTISRA----- 151
Query: 180 IEAEHAMQELNGTIPEGASEPITVKFANSPAGRAK 214
AE + G P T + S + K
Sbjct: 152 -AAEKLFGNMEGDCPSDWKTDSTCRMVTSESKNVK 185
>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 100
Score = 27.9 bits (62), Expect = 0.74
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 111 KRANLYVSGLPKHMTQEDLENLFRPYGTIITSRI 144
KR ++ PK DL LF +G I S I
Sbjct: 14 KRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWI 47
>d1g62a_ d.126.1.1 (A:) Ribosome anti-association factor eIF6 (aIF6)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 28.2 bits (63), Expect = 1.4
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 26 NSNLIVNYVPQTMTQEELQHLFSSVGEVESCKLIRDKTTA 65
N ++ VP T +ELQHL +S+ + + + ++ +A
Sbjct: 66 NRRGLL--VPTQTTDQELQHLRNSLPDSVKIQRVEERLSA 103
>d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 123
Score = 27.2 bits (60), Expect = 1.4
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 56 CKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS-SEAIKRAN 114
K+I +K T + LG + E A I L +V +A P+ SEAIK A
Sbjct: 54 VKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAA 113
Query: 115 LYVSGLPKHM 124
+ P H+
Sbjct: 114 MATYDKPIHI 123
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter
vinelandii [TaxId: 354]}
Length = 289
Score = 27.5 bits (60), Expect = 2.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 121 PKHMTQEDLENLFRPYGTIITS 142
P +T ++LE L +G +
Sbjct: 256 PNPITMDELEELLMEFGIMEVE 277
>d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 124
Score = 26.4 bits (58), Expect = 2.9
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 56 CKLIRDKTTAQSLGYGFVNYYRTED-AERAIIELNGLKLQNKSIKVSYARPS-SEAIKRA 113
K+I D T + LG + E + AI G + + +A P+ SEA+ A
Sbjct: 54 VKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAE-DLGMMVFAHPALSEALHEA 112
Query: 114 NLYVSGLPKHM 124
L VSG H+
Sbjct: 113 ALAVSGHAIHV 123
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine
5'-diphospho)-2C-methyl-D-erythritol kinase IspE
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 26.5 bits (58), Expect = 3.0
Identities = 15/52 (28%), Positives = 19/52 (36%)
Query: 237 FGNPLHHSARFKFAPLTADLLNNSMLPPKSLHGSGWCIFVYNLAPETEDNVL 288
F N AR +F + A L P L G+G C+F VL
Sbjct: 44 FSNDCEVIARKRFREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVL 95
>d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 123
Score = 26.1 bits (57), Expect = 3.4
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 56 CKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKVSYARPS-SEAIKRAN 114
K++ D T + LG + E A + L +V +A P+ SEA K AN
Sbjct: 54 VKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEAN 113
Query: 115 LYVSGLPKH 123
+ H
Sbjct: 114 MAAYDKAIH 122
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 95
Score = 25.6 bits (56), Expect = 3.6
Identities = 10/65 (15%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 41 EELQHLFSSVGEVESCKLIRDKTTAQSLGYGFVNYYRTEDAERAIIELNGLKLQNKSIKV 100
EL S G + ++ + + V + + A + +++G+K++ +++K+
Sbjct: 39 TELMQTLGSYGTIVLVRINQGQM--------LVTFADSHSALSVL-DVDGMKVKGRAVKI 89
Query: 101 SYARP 105
S
Sbjct: 90 SGPSS 94
>d1h95a_ b.40.4.5 (A:) Y-box protein 1 cold shock domain (YB1-CSD)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 25.2 bits (55), Expect = 3.7
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 313 KGFGFVCMTNYDEAVFAIQS 332
G+GF+ + E VF Q+
Sbjct: 20 NGYGFINRNDTKEDVFVHQT 39
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 26.4 bits (57), Expect = 6.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 121 PKHMTQEDLENLFRPYG 137
PK MTQE LE + YG
Sbjct: 253 PKPMTQERLEEILMQYG 269
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.388
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,275,480
Number of extensions: 58021
Number of successful extensions: 532
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 262
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)