BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9314
         (634 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P47179|DAN4_YEAST Cell wall protein DAN4 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=DAN4 PE=2 SV=1
          Length = 1161

 Score = 38.9 bits (89), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 70/142 (49%)

Query: 16  EVQSSEVLSEKDEVQSSEVSAKKEAIQSSEVLAEEDVVQSSEVLAEKDEVQSSEVLAEKD 75
             +SS+V S  +    SE ++  E  +SS+V +  +    SE  +  +  +SS+V +  +
Sbjct: 411 PTRSSQVTSSAEPTTVSEFTSSVEPTRSSQVTSSAEPTTVSEFTSSVEPTRSSQVTSSAE 470

Query: 76  EVQNSEVLAEKDEVQSSEVLSEKDEVQSSEVSAKKEVIQSSEVLSEEDVVQSSEVLTEKD 135
               SE  +  +  +SS+V S  +    SE ++  E I+SS+V S  +    SEV +  +
Sbjct: 471 PTTVSEFTSSVEPTRSSQVTSSAEPTTVSEFTSSVEPIRSSQVTSSAEPTTVSEVTSSVE 530

Query: 136 EVQSSEVLAEKDVEQSGEVLTE 157
            ++SS+V   + V   G   +E
Sbjct: 531 PIRSSQVTTTEPVSSFGSTFSE 552


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.289    0.111    0.246 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169,011,312
Number of Sequences: 539616
Number of extensions: 6478456
Number of successful extensions: 80158
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 4044
Number of HSP's that attempted gapping in prelim test: 34295
Number of HSP's gapped (non-prelim): 20714
length of query: 634
length of database: 191,569,459
effective HSP length: 124
effective length of query: 510
effective length of database: 124,657,075
effective search space: 63575108250
effective search space used: 63575108250
T: 11
A: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 45 (21.9 bits)
S2: 64 (29.3 bits)