Query psy9314
Match_columns 634
No_of_seqs 87 out of 89
Neff 3.2
Searched_HMMs 29240
Date Sat Aug 17 00:13:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9314.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9314hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b1v_M Phosphatase and actin r 2.4 4E+02 0.014 19.4 0.2 14 551-564 13-26 (32)
2 2v1n_A KIN17, protein KIN homo 1.6 7.4E+02 0.025 22.4 0.6 28 493-521 46-73 (111)
3 2kcn_A Antifungal protein; NMR 1.3 7.1E+02 0.024 20.1 -0.3 14 218-231 22-35 (55)
4 2e5q_A PHD finger protein 19; 0.8 1.1E+03 0.037 19.6 -0.4 15 3-17 7-22 (63)
5 3bl2_A V-BCL-2; protein-protei 0.8 1.1E+03 0.036 21.6 -0.6 12 18-29 26-37 (131)
6 2eqj_A Metal-response element- 0.7 1.3E+03 0.046 19.0 -0.4 15 3-17 13-28 (66)
7 1t4w_A CEP-1, C.elegans P53 tu 0.6 1.3E+03 0.045 22.3 -1.0 11 510-520 181-191 (196)
8 3agc_A RED chlorophyll catabol 0.6 1.9E+03 0.066 22.3 0.1 18 505-522 123-140 (276)
9 2jso_A Polymyxin resistance pr 0.5 2E+03 0.069 18.9 -0.1 23 513-535 47-69 (88)
10 1vc3_A L-aspartate-alpha-decar 0.5 1.6E+03 0.053 15.7 -0.7 9 626-634 7-15 (26)
No 1
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=2.45 E-value=4e+02 Score=19.41 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=6.8
Q ss_pred hhhhhhhhhhcccc
Q psy9314 551 DEVQSSEVLAEKDV 564 (634)
Q Consensus 551 ~~~~s~~~l~~k~~ 564 (634)
++-||++-|+.+.+
T Consensus 13 s~rqsreelikrgv 26 (32)
T 4b1v_M 13 SMRQSREELIKRGV 26 (32)
T ss_dssp HTCCCHHHHHHTTS
T ss_pred HhcccHHHHHHhhh
Confidence 44455555554443
No 2
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=1.61 E-value=7.4e+02 Score=22.37 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=18.0
Q ss_pred hhhhhcccccccccchhccccccchhhhc
Q psy9314 493 SSEVLAEKDVVQSSEVLAEKDVVQSSEVL 521 (634)
Q Consensus 493 s~E~l~~K~~v~sae~l~~kd~vq~aE~L 521 (634)
-.|||.||.||+=+-+.=. ..-.|..+|
T Consensus 46 YnEyI~dk~HiHMNaT~W~-tLT~Fvk~L 73 (111)
T 2v1n_A 46 YNEYISHREHIHMNATQWE-TLTDFTKWL 73 (111)
T ss_dssp HHHHTTSSCCCCGGGSSCS-SHHHHHHHH
T ss_pred HHHHhcccccccccccccc-cHHHHHHHh
Confidence 4689999999986654322 224566666
No 3
>2kcn_A Antifungal protein; NMR {Penicillium chrysogenum}
Probab=1.25 E-value=7.1e+02 Score=20.15 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=11.7
Q ss_pred cccccchhhhhhhc
Q psy9314 218 KDEVQNSEVLAEKN 231 (634)
Q Consensus 218 ~~~iq~se~~~~k~ 231 (634)
+..|++|+.|+|++
T Consensus 22 K~~i~kC~~~aN~k 35 (55)
T 2kcn_A 22 KDTFIKCPKFDNKK 35 (55)
T ss_dssp EEEEEECSCTTTCC
T ss_pred cEeEEeCcchhccc
Confidence 56788999999887
No 4
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=0.84 E-value=1.1e+03 Score=19.56 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=9.2
Q ss_pred ccccchhhhhh-hhhh
Q psy9314 3 IYKQGDEVLAE-KDEV 17 (634)
Q Consensus 3 ~~~~~~dvla~-~dal 17 (634)
-|+-|.||||. +|-|
T Consensus 7 ~f~eGqdVLarWsDGl 22 (63)
T 2e5q_A 7 GLTEGQYVLCRWTDGL 22 (63)
T ss_dssp CCCTTCEEEEECTTSC
T ss_pred ceecCCEEEEEecCCC
Confidence 35667777765 5554
No 5
>3bl2_A V-BCL-2; protein-protein complex, viral BCL-2, apoptosis, autophagy, antiviral defense, coiled coil, cytoplasm, golgi apparatus, membrane; 2.30A {Murid herpesvirus 4} SCOP: f.1.4.1 PDB: 3dvu_A 2abo_A
Probab=0.82 E-value=1.1e+03 Score=21.61 Aligned_cols=12 Identities=25% Similarity=0.374 Sum_probs=6.6
Q ss_pred hcccccccchhh
Q psy9314 18 QSSEVLSEKDEV 29 (634)
Q Consensus 18 vdad~la~~dal 29 (634)
||+++|+|||.+
T Consensus 26 vds~vL~DVs~i 37 (131)
T 3bl2_A 26 VDSAVLVDVSKI 37 (131)
T ss_dssp CCHHHHHHHHHH
T ss_pred cchhhHhhHHHH
Confidence 555555555544
No 6
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=0.69 E-value=1.3e+03 Score=19.03 Aligned_cols=15 Identities=33% Similarity=0.714 Sum_probs=9.1
Q ss_pred ccccchhhhhh-hhhh
Q psy9314 3 IYKQGDEVLAE-KDEV 17 (634)
Q Consensus 3 ~~~~~~dvla~-~dal 17 (634)
-|+-|++|||- +|-|
T Consensus 13 ~f~vGddVLA~wtDGl 28 (66)
T 2eqj_A 13 KFEEGQDVLARWSDGL 28 (66)
T ss_dssp CSCTTCEEEEECTTSC
T ss_pred cccCCCEEEEEEccCc
Confidence 36667777765 5544
No 7
>1t4w_A CEP-1, C.elegans P53 tumor suppressor-like transcription factor; DNA-binding domain; 2.10A {Caenorhabditis elegans} SCOP: b.2.5.2
Probab=0.59 E-value=1.3e+03 Score=22.27 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=4.0
Q ss_pred ccccccchhhh
Q psy9314 510 AEKDVVQSSEV 520 (634)
Q Consensus 510 ~~kd~vq~aE~ 520 (634)
|++|--+|||.
T Consensus 181 PRRDwkNFcEk 191 (196)
T 1t4w_A 181 PRRDWKNFCER 191 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred chhhhHHHHhh
Confidence 33333333333
No 8
>3agc_A RED chlorophyll catabolite reductase, chloroplast; chlorophyll degradation, substrate-bound enzyme, chlorophyll catabolism, NADP; HET: RCC; 2.00A {Arabidopsis thaliana} PDB: 3agb_A* 3aga_A* 2zxl_A 2zxk_A
Probab=0.59 E-value=1.9e+03 Score=22.31 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.3
Q ss_pred ccchhccccccchhhhcc
Q psy9314 505 SSEVLAEKDVVQSSEVLS 522 (634)
Q Consensus 505 sae~l~~kd~vq~aE~L~ 522 (634)
==|.++|||-++..+||+
T Consensus 123 vLDl~PRkdLv~~~dYL~ 140 (276)
T 3agc_A 123 ILDLPHRKDLVLNPDYLK 140 (276)
T ss_dssp EEECCCSSCTTTCHHHHH
T ss_pred EEecCCccccccCHHHHH
Confidence 347788999888888884
No 9
>2jso_A Polymyxin resistance protein PMRD; antibiotic resistance, transcription, signaling Pro; NMR {Escherichia coli}
Probab=0.54 E-value=2e+03 Score=18.88 Aligned_cols=23 Identities=13% Similarity=0.216 Sum_probs=17.7
Q ss_pred cccchhhhccccccccccchhhc
Q psy9314 513 DVVQSSEVLSEKNEVQSSEVLVE 535 (634)
Q Consensus 513 d~vq~aE~L~~K~ev~sa~vl~~ 535 (634)
.|+++|-|..+++.-++--++--
T Consensus 47 sPL~dA~YciNrn~~~tvKii~A 69 (88)
T 2jso_A 47 SPLQNALYCINREKLHTVKVLSA 69 (88)
T ss_dssp CBSSSSEEEEBTEEEEEEEEEEE
T ss_pred ccchhhhhhhcCCCCceEEEEec
Confidence 47888999999988887666543
No 10
>1vc3_A L-aspartate-alpha-decarboxylase light chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_A
Probab=0.53 E-value=1.6e+03 Score=15.69 Aligned_cols=9 Identities=44% Similarity=0.744 Sum_probs=0.0
Q ss_pred ccccccCCC
Q psy9314 626 NSKMHNADV 634 (634)
Q Consensus 626 ~~~~~~~~~ 634 (634)
.+|.|.|-|
T Consensus 7 ksKiHratV 15 (26)
T 1vc3_A 7 HAKIHRATV 15 (26)
T ss_dssp EEEEEEEEC
T ss_pred hhhhcceEE
Done!