RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9314
(634 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.3 bits (171), Expect = 1e-12
Identities = 73/461 (15%), Positives = 149/461 (32%), Gaps = 118/461 (25%)
Query: 181 EENEVQSS-----EVLAE--------KDVEQSSEVLAEKDEVQNSEVLAEKDEVQNSEVL 227
E E Q V + KDV+ + + K+E+ ++ KD V + L
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID--HIIMSKDAVSGTLRL 67
Query: 228 AEKNEVQKEDEVQSSEVLAEKGVVQSCEVLAEEDEVQSSEVLAEEDEVKSSEV---LAEK 284
++E+ VQ E+ + + + L + E S + ++
Sbjct: 68 FWTLLSKQEEMVQ---KFVEEVLRINYKFLMSP--------IKTEQRQPSMMTRMYIEQR 116
Query: 285 DEVQNSEVLAEEDEVQSSEV----------LAEEDEV---------KSSEVLAEKDEVQS 325
D + N + + V + L V K+ +A D S
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--WVA-LDVCLS 173
Query: 326 SEVLAEND---------EVQNSEVLAEKDE---VQSSEVLAEEDEVQSSEVLAEKDEVQS 373
+V + D + E + E + Q + SS + +Q+
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQA 232
Query: 374 --SEVLAEKDVVQSSKVLAEEDEVQSSEVLAEKDVVQSSEVL-----AEEDEVQSSEVLV 426
+L K VL VQ+++ ++ S ++L + + S+
Sbjct: 233 ELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATTT 287
Query: 427 EKDEVQNSEVLVEKDEVQSSEVLAEKDEVQSSE--------------VLAE--KDAVQSS 470
+S L DE +L + + + + ++AE +D + +
Sbjct: 288 HISLDHHSMTL-TPDE--VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 471 E----VLAEK--DVVQSS-EVLAEKDVEQSSEVLA--EKDVVQSSEVLA---EKDVVQSS 518
+ V +K +++SS VL + + + L+ + +L+ +
Sbjct: 345 DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 519 EVLSEKNEVQSSEVLVEKSPLKET--------DIKEEAEKD 551
V+ K S LVEK P + T ++K + E +
Sbjct: 405 MVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENE 442
Score = 61.4 bits (148), Expect = 8e-10
Identities = 53/424 (12%), Positives = 124/424 (29%), Gaps = 119/424 (28%)
Query: 8 DEVLAEKDEVQSSEVLSEKDEVQSSEVSAK--KEAIQSS-----EVLAEEDVVQSSEVLA 60
D ++ KD V + L + E+ K +E ++ + + E S
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM--- 108
Query: 61 EKDEVQSSEVLAEKDEVQNSEVLAEKDEVQSSEVLSEKDEVQSSEVSAKKEVIQSSEVLS 120
+ + ++D + N + K V + ++ + E+
Sbjct: 109 ------TRMYIEQRDRLYNDNQVFAKYNVSRLQ-----------PYLKLRQALL--ELRP 149
Query: 121 EEDVV--------QSSEVLTEKDEVQSSEVLAEKDVEQS----------GEVLTEKDEVQ 162
++V+ ++ + +V V+ + + ++
Sbjct: 150 AKNVLIDGVLGSGKT--WVA-------LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 163 NSEVL-------AEENVVQSSEVLAEENEVQS--SEVLAEKDVEQSSEVLAEKDEVQNSE 213
+ L SS + + +Q+ +L K E VL VQN++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNAK 257
Query: 214 VLAEKD------------EVQNSEVLAEKNEVQKED------EVQSSEVLAEKGVVQSCE 255
+ +V + A + + + +L K + +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQ 316
Query: 256 VLAEEDEVQSS----EVLAEE--------DEVKSSEVLAEKDEVQNS-EVLAEEDEVQSS 302
L E + ++ ++AE D K +++S VL E E +
Sbjct: 317 DLPRE-VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKM 374
Query: 303 -EVLA--EEDEVK-SSEVLAEKDEVQSSEVLAENDEVQNSEVLAEKDEVQSSEVLAEEDE 358
+ L+ + +L ++ + + V+ K S L E+
Sbjct: 375 FDRLSVFPPS-AHIPTILL---------SLIWFDVIKSDVMVVVNKLHKYS---LVEKQP 421
Query: 359 VQSS 362
+S+
Sbjct: 422 KEST 425
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 7e-06
Identities = 44/290 (15%), Positives = 104/290 (35%), Gaps = 78/290 (26%)
Query: 134 KDEVQSSEVLAEKDV-EQSGEVLTEK------DEVQ-NSEVLAEENVVQSSEVLAE---- 181
D ++S+ A +DV ++ + D V N L + + + E
Sbjct: 1633 MDLYKTSKA-A-QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 182 -------ENEVQSSEVLAEKDVEQSSEVLAEKDEVQNSEVLAEKDEVQNSE---VLAEKN 231
+ ++++ ++ E + E S+ ++ +L Q ++ L EK
Sbjct: 1691 MIFETIVDGKLKTEKIFKEIN-EHSTSYTFRSEK----GLL---SATQFTQPALTLMEKA 1742
Query: 232 EVQKEDEVQSSEVLAEKGVVQSCEVLAEED-----E----VQSSEVLAEEDEVK------ 276
E L KG++ + A E ++V++ E V+
Sbjct: 1743 AF---------EDLKSKGLIPADATFA---GHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 277 -SSEVLAEKDEVQNSEV-LAEEDEVQSSEVLAEEDEVKSSEVLAEKDEVQSSEVLAE--N 332
+ +V +DE+ S + + + + ++E + + E+ ++ ++ E N
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL----QYVVERVGKRTGWLV-EIVN 1845
Query: 333 DEVQNSE----VLA-EKDEVQS-SEVLAEEDEVQSSEVLAEKDEVQSSEV 376
N E V A + + + + VL ++Q +++ + + EV
Sbjct: 1846 Y---NVENQQYVAAGDLRALDTVTNVL-NFIKLQKIDIIELQKSLSLEEV 1891
Score = 41.2 bits (96), Expect = 0.001
Identities = 32/225 (14%), Positives = 81/225 (36%), Gaps = 66/225 (29%)
Query: 324 QSSEVLAENDEVQNSEVLAEKDEVQSSEVLAEEDEVQSSEVLAEKDEV-------Q---- 372
+ + + EN E + + ++++ ++ E +E +S + + Q
Sbjct: 1679 EKGKRIRENYSAMIFETIVD-GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT 1737
Query: 373 --SS---EVLAEKDVVQSSKVLAEED-----E----VQSSEVLAEKDVV-------QSSE 411
E L K ++ + A E ++V++ + +V + +
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFA---GHSLGEYAALASLADVMSIESLVEVVFYRGMTMQ 1794
Query: 412 VLAEEDEVQSSEV---------LVEKDEVQNSEVLVEKDEVQSSEVLAEKDEV------- 455
V DE+ S + + + +VE+ ++ ++ E+
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV----EIVNYNVEN 1850
Query: 456 -QSSEVLA-EKDAVQS-SEVL----AEK-DVVQSSEVLAEKDVEQ 492
Q V A + A+ + + VL +K D+++ + L+ ++VE
Sbjct: 1851 QQY--VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 32.7 bits (74), Expect = 0.46
Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 22/91 (24%)
Query: 539 LKETDIK------EEAEKDEVQSS--EVLA-----------EKDVVQSSEVLAEKVVEQS 579
L+E K E D+ ++ E++ V Q +VL + E
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 580 SEVLAEKDV---VQSSEVLAEKDVVQSSEVL 607
+ L D+ + +V++ E++
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELI 123
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 39.4 bits (92), Expect = 0.004
Identities = 61/355 (17%), Positives = 147/355 (41%), Gaps = 25/355 (7%)
Query: 1 MSIYKQGDEVLAEKDEVQSSEVLSEKDEVQSSEVSAKKEAIQSSEVLAEEDVVQSSEVLA 60
+ + +Q +E+ A+ +E+Q ++ +K E + E+ K + + L +E + +E+ A
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 61 EKDEVQSSEVLAE---KDEVQNSEVLAEKDEVQSSEVLSEKDEVQSSEVSAKKEVIQSSE 117
E +E++ + ++ + E E++E +S ++ +EK ++Q + ++++ +
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEA 969
Query: 118 VLSEEDVVQSSEVLTEKDEVQSSEVLAEKDVEQSGEVLTEKDEVQNSEVLAEENVVQSSE 177
+ E +T +++ E +Q+ ++ E+ EE V +
Sbjct: 970 ARQKL----QLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL-------LEERVSDLTT 1018
Query: 178 VLAEENEVQSSEVLAEKDVEQSSEVLAEKDEVQNSEVLAEKDEVQNSEVLAEKNEVQKED 237
LAEE E + + E L + + E+ Q E + K E + D
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLK-------KEEKSRQELEKIKRKLEGESSD 1071
Query: 238 EVQSSEVLAEKGVVQSCEVLAEEDEVQSSEVLAEEDEVKSSEVLAEKDEVQNS-EVLAEE 296
+ L + ++ +E+E+Q++ E++ + + L + E+++ L E+
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131
Query: 297 DEVQSSEVLAEEDEVKSSEVLAEKDEVQSSEVLAENDEVQNSEVLAEKDEVQSSE 351
E + + E + + L+E+ E +E+ D + L D +
Sbjct: 1132 LESEKAARNKAEKQKRD---LSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 38.7 bits (90), Expect = 0.006
Identities = 60/338 (17%), Positives = 140/338 (41%), Gaps = 22/338 (6%)
Query: 163 NSEVLAEENVVQSSEVLAEENEVQSSEVLAEKDVEQS-----SEVLAEKDEVQNSEVLAE 217
+ E+ + Q +E +E E + +++ EK++ Q +E+ AE +E++ +
Sbjct: 863 DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922
Query: 218 KDEVQNSEVLAEKNEVQKEDEVQSSEVLAEKGVVQSCEVLAEEDEVQSSEVLAEEDEVKS 277
++ E+L E +E+E +S ++ AEK + ++ E EE+E
Sbjct: 923 QEL---EEILHEMEARIEEEEERSQQLQAEK--------KKMQQQMLDLEEQLEEEEAAR 971
Query: 278 SEVLAEKDEVQNSEVLAEEDEVQSSEVLAEEDEVKSSEVLAEKDEVQSSEVLAENDEVQN 337
++ EK E+D + + + + + ++L E+ ++ + E ++ +N
Sbjct: 972 QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER--KLLEERVSDLTTNLAEEEEKAKN 1029
Query: 338 SEVLAEKDEVQSSEVLAEEDEVQSSEVLAEKDEVQSSEVLAEKDVVQSSKVLAEEDEVQS 397
L K E SE+ E ++ E ++ E ++ E + + +
Sbjct: 1030 LTKLKNKHESMISEL---EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086
Query: 398 SEVLAEKDVVQSSEVLAEEDEVQSSEVLVEKDEVQNSEVLVEKDEVQSSEVLAEKDEVQS 457
LA+K+ + + EDE ++K S + +++++S + K E Q
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQK 1146
Query: 458 SEVLAEKDAVQSSEVLAEKDVVQSSEVLAEKDVEQSSE 495
++ E +A++ +E+ D + + L D + +
Sbjct: 1147 RDLSEELEALK-TELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 32.1 bits (73), Expect = 0.70
Identities = 48/313 (15%), Positives = 116/313 (37%), Gaps = 4/313 (1%)
Query: 300 QSSEVLAEEDEVKSSEVLAEKDEVQSSEVLAENDEVQNSEVLAEKDEVQSSEVLAEEDEV 359
EE + K E+ K+ Q +E + E +++++ EK+ +Q + +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQE---KLQAETE 906
Query: 360 QSSEVLAEKDEVQSSEVLAEKDVVQSSKVLAEEDEVQSSEVLAEKDVVQSSEVLAEEDEV 419
+E + + + + E+ + + + EE+E +K + Q L E+ E
Sbjct: 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
Query: 420 QSSEVLVEKDEVQNSEVLVEKDEVQSSEVLAEKDEVQSSEVLAEKDAVQSSEVLAEKDVV 479
+ + + E ++ ++K E + + +++ L E+ + LAE++
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 480 QSSEVLAEKDVEQSSEVLAEKDVVQSSEVLAEKDVVQSSEVLSEKNEVQSSEVLVEKSPL 539
+ + E L + + + + + E S Q +E+ + + L
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086
Query: 540 KETDIKEEAEKDEVQSSEVLAEKDVVQSSEVLAEKVVEQSSEVLAEKDVVQSSEVLAEKD 599
K K+E E + + E ++ ++ S++ + + +++ AEK
Sbjct: 1087 KAQLAKKEEELQAAL-ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145
Query: 600 VVQSSEVLSEKNE 612
SE L
Sbjct: 1146 KRDLSEELEALKT 1158
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.35
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Query: 25 EKDEVQSSEVSAKKEAIQSSEVLAEEDVVQSS 56
EK ++ + S K A S+ LA ++++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALA----IKAT 45
Score = 29.9 bits (66), Expect = 1.6
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 6/30 (20%)
Query: 229 EKNEVQK-EDEVQ-----SSEVLAEKGVVQ 252
EK ++K + ++ S+ LA K ++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 29.5 bits (66), Expect = 3.3
Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 5/178 (2%)
Query: 180 AEENEVQSSEVLAEKDVEQSSEVLAEKDEVQNSEVLAEKDEVQNSEVLAEKNEVQKEDEV 239
A+ E Q +EVL +++ E+ L E E + L + D ++L E + D
Sbjct: 9 AQAQEAQETEVLVQEEAEE----LPEFPEGEPDPDLEDPDLALEDDLLDLPEEGEGLDLE 64
Query: 240 QSSEVLAEKGVVQSCEVLAEEDEVQSSEVLAEEDEVKSSEVLAEKDE-VQNSEVLAEEDE 298
+ E L + S V E+ +L E+EV+ + + E E ++ + D
Sbjct: 65 EEEEDLPIPKISTSDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDP 124
Query: 299 VQSSEVLAEEDEVKSSEVLAEKDEVQSSEVLAENDEVQNSEVLAEKDEVQSSEVLAEE 356
EV+ + + + E + + + E E
Sbjct: 125 DLIREVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEA 182
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 28.8 bits (65), Expect = 7.2
Identities = 21/87 (24%), Positives = 32/87 (36%)
Query: 143 LAEKDVEQSGEVLTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSSEVLAEKDVEQSSEV 202
+ EK E L E D EVL E + + E VL +++EV
Sbjct: 24 MEEKLAVSLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEV 83
Query: 203 LAEKDEVQNSEVLAEKDEVQNSEVLAE 229
L+ + +E L + E+L E
Sbjct: 84 LSHLSPEEQAEYLKTLPPWRLREILEE 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.289 0.111 0.246
Gapped
Lambda K H
0.267 0.0431 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,823,729
Number of extensions: 485342
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 377
Number of HSP's successfully gapped: 96
Length of query: 634
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 535
Effective length of database: 3,937,614
Effective search space: 2106623490
Effective search space used: 2106623490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 45 (21.9 bits)
S2: 60 (27.6 bits)