BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9316
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 44/219 (20%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V+ +S DG+R+AS DK++ +F K K + + H V C +++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVF---KAETGEKLLDIKAHEDEV-LCCAFSSDD 676
Query: 110 DLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSVAIFA 148
++T S DK V+IWD+ T K + ++LA+GS D + ++
Sbjct: 677 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ--------KS 200
L++K N GHT SV+ C + + +LL++ S D T+R+WD R+ K
Sbjct: 737 LNQKECRNTMF---GHTNSVNH-CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 792
Query: 201 QIIATKG--ENINI-----TWAPNGNTIAVGNKEDLVTF 232
++++ E++ + +W+ +G+ I V K ++ F
Sbjct: 793 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 831
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 34/174 (19%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113
V +WS DG ++ + +K V +F + G L + ++ GH ++ Q C + L
Sbjct: 808 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAE--IHTGHHSTI-QYCDFSPYDHLAV 863
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
A V +W+ S++ +A RGH V + +
Sbjct: 864 IALSQYCVELWNI---DSRLKVADC-----------------------RGHLSWVHGVMF 897
Query: 174 HATNPDLLSTASGDKTVRIWDA-RTQKSQIIATKGENINITWAPNGNTI-AVGN 225
L TAS D+T+R+W+ + K+ I K E I++ + N + AV N
Sbjct: 898 SPDGSSFL-TASDDQTIRVWETKKVCKNSAIVLKQE-IDVVFQENETMVLAVDN 949
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 32/148 (21%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
QAH V D R L S SFD +V ++ + G + ++ + H G+V C ++
Sbjct: 1048 QAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV-ITGRIERD--FTCHQGTVLS-CAISS 1102
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ S+ S DKT +IW SFD + L +GH G
Sbjct: 1103 DATKFSSTSADKTAKIW--------------SFDLLSPLHEL------------KGHNGC 1136
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDA 195
V + + + LL+T + +RIW+
Sbjct: 1137 V-RCSAFSLDGILLATGDDNGEIRIWNV 1163
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 44/219 (20%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V+ +S DG+R+AS DK++ +F K K + + H V C +++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVF---KAETGEKLLDIKAHEDEV-LCCAFSSDD 669
Query: 110 DLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSVAIFA 148
++T S DK V+IWD+ T K + ++LA+GS D + ++
Sbjct: 670 SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ--------KS 200
L++K N GHT SV+ C + + +LL++ S D T+R+WD R+ K
Sbjct: 730 LNQKECRNTMF---GHTNSVNH-CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKR 785
Query: 201 QIIATKG--ENINI-----TWAPNGNTIAVGNKEDLVTF 232
++++ E++ + +W+ +G+ I V K ++ F
Sbjct: 786 FFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 34/174 (19%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113
V +WS DG ++ + +K V +F + G L + ++ GH ++ Q C + L
Sbjct: 801 VKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAE--IHTGHHSTI-QYCDFSPYDHLAV 856
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
A V +W+ S++ +A RGH V + +
Sbjct: 857 IALSQYCVELWNI---DSRLKVADC-----------------------RGHLSWVHGVMF 890
Query: 174 HATNPDLLSTASGDKTVRIWDA-RTQKSQIIATKGENINITWAPNGNTI-AVGN 225
L TAS D+T+R+W+ + K+ I K E I++ + N + AV N
Sbjct: 891 SPDGSSFL-TASDDQTIRVWETKKVCKNSAIVLKQE-IDVVFQENETMVLAVDN 942
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 32/148 (21%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
QAH V D R L S SFD +V ++ + G + ++ + H G+V C ++
Sbjct: 1041 QAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNV-ITGRIERD--FTCHQGTVLS-CAISS 1095
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ S+ S DKT +IW SFD + L +GH G
Sbjct: 1096 DATKFSSTSADKTAKIW--------------SFDLLSPLHEL------------KGHNGC 1129
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDA 195
V + + + LL+T + +RIW+
Sbjct: 1130 V-RCSAFSLDGILLATGDDNGEIRIWNV 1156
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 115/219 (52%), Gaps = 44/219 (20%)
Query: 40 THNDIKE---YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
+H +KE +AH S V VA+S DG+ +AS S DK+V ++ ++ G L + + GH+
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLT--GHS 57
Query: 97 GSVDQLCWH-ATNPD--LLSTASGDKTVRIWDARTQKSQIM------------------L 135
SV W A +PD +++AS DKTV++W+ Q Q + +
Sbjct: 58 SSV----WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI 113
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH-ATNPD--LLSTASGDKTVRI 192
AS S DK+V ++ ++ G L + + GH+ SV W A +PD +++AS DKTV++
Sbjct: 114 ASASDDKTVKLW--NRNGQLLQTLT--GHSSSV----WGVAFSPDGQTIASASDDKTVKL 165
Query: 193 WDARTQKSQIIATKGENI-NITWAPNGNTIAVGNKEDLV 230
W+ Q Q + ++ + ++P+G TIA + + V
Sbjct: 166 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 204
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 47/243 (19%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDI-KEYQAHGSKVHSVAWSCDGRRLASGSF 71
SP+ + + S S D VK +N + + + H S V VA+S DG+ +AS S
Sbjct: 353 SPDGQTIASASD-------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 405
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH-ATNPD--LLSTASGDKTVRIWDART 128
DK+V ++ ++ G L + + GH+ SV W A +PD +++AS DKTV++W+
Sbjct: 406 DKTVKLW--NRNGQLLQTLT--GHSSSV----WGVAFSPDDQTIASASDDKTVKLWNRNG 457
Query: 129 QKSQIM------------------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 170
Q Q + +AS S DK+V ++ ++ G L + + GH+ SV
Sbjct: 458 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLT--GHSSSVRG 513
Query: 171 LCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENI-NITWAPNGNTIAVGNKE 227
+ A +PD +++AS DKTV++W+ Q Q + ++ + ++P+G TIA + +
Sbjct: 514 V---AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSD 570
Query: 228 DLV 230
V
Sbjct: 571 KTV 573
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 123/243 (50%), Gaps = 47/243 (19%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDI-KEYQAHGSKVHSVAWSCDGRRLASGSF 71
SP+ + + S S D VK +N + + + H S V VA+S DG+ +AS S
Sbjct: 148 SPDGQTIASASD-------DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD 200
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
DK+V ++ ++ G L + + GH+ SV + A +PD +++AS DKTV++W+ Q
Sbjct: 201 DKTVKLW--NRNGQLLQTLT--GHSSSVRGV---AFSPDGQTIASASDDKTVKLWNRNGQ 253
Query: 130 KSQIM------------------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
Q + +AS S DK+V ++ ++ G L + + GH+ SV
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW--NRNGQLLQTLT--GHSSSV--- 306
Query: 172 CWH-ATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENI-NITWAPNGNTIAVGNKE 227
W A +PD +++AS DKTV++W+ Q Q + ++ + ++P+G TIA + +
Sbjct: 307 -WGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDD 365
Query: 228 DLV 230
V
Sbjct: 366 KTV 368
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/273 (28%), Positives = 135/273 (49%), Gaps = 55/273 (20%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDI-KEYQAHGSKVHSVAWSCDGRRLASGSF 71
SP+ + + S S D VK +N + + + H S V VA+S DG+ +AS S
Sbjct: 189 SPDGQTIASASD-------DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 241
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
DK+V ++ ++ G L + + GH+ SV+ + + PD +++AS DKTV++W+ Q
Sbjct: 242 DKTVKLW--NRNGQLLQTLT--GHSSSVNGVAFR---PDGQTIASASDDKTVKLWNRNGQ 294
Query: 130 KSQIM------------------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
Q + +AS S DK+V ++ ++ G + + GH+ SV
Sbjct: 295 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW--NRNGQHLQTLT--GHSSSV--- 347
Query: 172 CWH-ATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENI-NITWAPNGNTIAVGNKE 227
W A +PD +++AS DKTV++W+ Q Q + ++ + ++P+G TIA + +
Sbjct: 348 -WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDD 406
Query: 228 DLVTFIDVVKSLPPRERTLTSRGHLMETRSLWG 260
V + L +TLT GH + S+WG
Sbjct: 407 KTVKLWNRNGQL---LQTLT--GH---SSSVWG 431
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/206 (30%), Positives = 105/206 (50%), Gaps = 46/206 (22%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDI-KEYQAHGSKVHSVAWSCDGRRLASGSF 71
SP+ + + S S D VK +N + + + H S V VA+S D + +AS S
Sbjct: 394 SPDGQTIASASD-------DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASD 446
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
DK+V ++ ++ G L + + GH+ SV + A +PD +++AS DKTV++W+ Q
Sbjct: 447 DKTVKLW--NRNGQLLQTLT--GHSSSVRGV---AFSPDGQTIASASDDKTVKLWNRNGQ 499
Query: 130 KSQIM------------------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
Q + +AS S DK+V ++ ++ G L + + GH+ SV
Sbjct: 500 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLT--GHSSSV--- 552
Query: 172 CWH-ATNPD--LLSTASGDKTVRIWD 194
W A +PD +++AS DKTV++W+
Sbjct: 553 -WGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 110/261 (42%), Gaps = 50/261 (19%)
Query: 18 LLPSGS---QFHLV-CKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDK 73
+L +GS + LV K DD+ T D+ + AH + SVAW LA+GSFD
Sbjct: 26 ILATGSTDRKIKLVSVKYDDF-----TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80
Query: 74 SVAIFALDKKGDLNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART- 128
+V+I+A ++ D E+ + GH V + W + + L+T S DK+V IW+
Sbjct: 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW-SNDGYYLATCSRDKSVWIWETDES 139
Query: 129 ----------------------QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
S+ +LAS S+D +V I+ D D V GH G
Sbjct: 140 GEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK-DYDDDWECVAVLNGHEG 198
Query: 167 SVDQLCWHATNPDL-LSTASGDKTVRIW-----DARTQKSQIIAT------KGENINITW 214
+V + T L + S D TVR+W D Q+ + K + N+ W
Sbjct: 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAW 258
Query: 215 APNGNTIAVGNKEDLVTFIDV 235
NG +VG L + +V
Sbjct: 259 GFNGLIASVGADGVLAVYEEV 279
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/252 (25%), Positives = 100/252 (39%), Gaps = 48/252 (19%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+ H V VAWS G LAS SFD + I+ ++ D GH V + W A
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAW-AP 115
Query: 108 NPDLLSTASGDKTVRIWDARTQ----------------------KSQIMLASGSFDKSVA 145
+ +LL+T S DK+V +W+ + SQ +LAS S+D +V
Sbjct: 116 SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVK 175
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP--DLLSTASGDKTVRIWDARTQ-KSQI 202
++ +++ D GH +V L A +P L++ S D+TVRIW Q
Sbjct: 176 LYR-EEEDDWVCCATLEGHESTVWSL---AFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231
Query: 203 IATKGEN-----------------INITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERT 245
+A G + +I W +A +D + + P++ T
Sbjct: 232 VACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT 291
Query: 246 LTSRGHLMETRS 257
+ HL + S
Sbjct: 292 FSLTAHLHQAHS 303
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 29/224 (12%)
Query: 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 111
S+ +AW+ G LAS D+ + I+ + + K V+ GH +V ++ W +
Sbjct: 17 SRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG-NY 75
Query: 112 LSTASGDKTVRIWDARTQKSQI---------------------MLASGSFDKSVAIFALD 150
L++AS D T IW + +LA+ S DKSV ++ +D
Sbjct: 76 LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENI 210
++ + V HT V + WH + +LL++AS D TV+++ AT +
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWVCCATLEGHE 194
Query: 211 NITWA----PNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRG 250
+ W+ P+G +A + + V + LP E+ + G
Sbjct: 195 STVWSLAFDPSGQRLASCSDDRTVRIWR--QYLPGNEQGVACSG 236
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 5/129 (3%)
Query: 111 LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 170
LL R W + +LAS D+ + I+ + + K V+ GH +V +
Sbjct: 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRK 66
Query: 171 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIAVGNK 226
+ W + L++AS D T IW + + T + E ++ WAP+GN +A ++
Sbjct: 67 VAWSPCG-NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR 125
Query: 227 EDLVTFIDV 235
+ V +V
Sbjct: 126 DKSVWVWEV 134
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 97/219 (44%), Gaps = 44/219 (20%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V+ +S DG+R+AS DK++ +F K K + + H V C +T+
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVF---KAETGEKLLEIKAHEDEV-LCCAFSTDD 675
Query: 110 DLLSTASGDKTVRIWDART---------------------QKSQIMLASGSFDKSVAIFA 148
++T S DK V+IW++ T ++LA+GS D + ++
Sbjct: 676 RFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART-QKSQIIATKG 207
L++K N GHT SV+ C + + LL++ S D T+++WDA + + + I K
Sbjct: 736 LNQKECRN---TMFGHTNSVNH-CRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQ 791
Query: 208 ENINI--------------TWAPNGNTIAVGNKEDLVTF 232
+N+ +W+ +G I V K + F
Sbjct: 792 FFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLF 830
Score = 34.3 bits (77), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 31/131 (23%)
Query: 65 RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
RL S SFD +V ++ + NKE + H G+V C + + S+ S DKT +IW
Sbjct: 1063 RLLSWSFDGTVKVWNIITG---NKEKDFVCHQGTVLS-CDISHDATKFSSTSADKTAKIW 1118
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184
SFD + + L RGH G V + + + LL+T
Sbjct: 1119 --------------SFDLLLPLHEL------------RGHNGCV-RCSAFSVDSTLLATG 1151
Query: 185 SGDKTVRIWDA 195
+ +RIW+
Sbjct: 1152 DDNGEIRIWNV 1162
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR--TQKSQIMLASGS----FDKSVAI 146
RGH V + + L T+S D+T+R+W+ + + S +ML + V +
Sbjct: 885 RGHLSWVHGVMFSPDGSSFL-TSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMV 943
Query: 147 FALDKKGDLNKEVVYRGHTGSVD-----QLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
A+D + + + G TG +D Q+ +P L A GD+ I ++
Sbjct: 944 LAVDH---IRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNR 1000
Query: 202 IIATKGENINITW 214
I ++ ++ W
Sbjct: 1001 IFQSRFQHKKTVW 1013
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 37/210 (17%)
Query: 33 DYVKHFNTHNDIKE------YQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIF---ALDK 82
DY KH + + E + H + + ++W+ + L S S D ++ ++ A+ K
Sbjct: 153 DYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK 212
Query: 83 KGDL-NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFD 141
+G + + + ++ GHT V+ + WH + L + + D+ + IWD R+ + S S D
Sbjct: 213 EGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTS--KPSHSVD 270
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
HT V+ L ++ + +L+T S DKTV +WD R K +
Sbjct: 271 ---------------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 309
Query: 202 I---IATKGENINITWAPNGNTIAVGNKED 228
+ + K E + W+P+ TI + D
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTD 339
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 47 YQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105
+ H + V V+W L S + D+ + I+ HT V+ L ++
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN 282
Query: 106 ATNPDLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSV 144
+ +L+T S DKTV +WD R K ++ +LAS D+ +
Sbjct: 283 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 342
Query: 145 AIFALDKKGDLNKE-----------VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++ L K G+ ++ GHT + W+ P ++ + S D +++W
Sbjct: 343 NVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 34/140 (24%)
Query: 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI--------------------- 133
H G V++ + NP +++T + V ++D S+
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYG 182
Query: 134 ---------MLASGSFDKSVAIF---ALDKKGD-LNKEVVYRGHTGSVDQLCWHATNPDL 180
L S S D ++ ++ A+ K+G ++ + ++ GHT V+ + WH + L
Sbjct: 183 LSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESL 242
Query: 181 LSTASGDKTVRIWDARTQKS 200
+ + D+ + IWD R+ +
Sbjct: 243 FGSVADDQKLMIWDTRSNNT 262
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKE-----------VV 91
+ +++H ++ V WS LAS D+ + ++ L K G+ +
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFI 369
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
+ GHT + W+ P ++ + S D +++W
Sbjct: 370 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 33/206 (16%)
Query: 42 NDIKEYQAHGSKVH-----SVAWSCDGRRLASGSFDKSVAIFAL----DKKGDLNKEVVY 92
N + + H K+H A++ +G+ +A G D + +IF L D+ G++ V
Sbjct: 94 NALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL 153
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
GH G + L T SGD+T +WD T + ++IF +
Sbjct: 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT------------GQRISIFGSE-- 199
Query: 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE--NI 210
GHT V L ++ N ++ + S D TVR+WD R + G +I
Sbjct: 200 -------FPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDI 252
Query: 211 N-ITWAPNGNTIAVGNKEDLVTFIDV 235
N + + P+G G+ + D+
Sbjct: 253 NSVKFFPDGQRFGTGSDDGTCRLFDM 278
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 40 THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80
T ++ Y H ++SV + DG+R +GS D + +F +
Sbjct: 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 85/189 (44%), Gaps = 31/189 (16%)
Query: 48 QAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALD---KKGDL-NKEVVYRGHTGSVDQL 102
+ H + + ++W+ + L S S D +V ++ ++ K+G + + + ++ GH+ V+ +
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYR 162
WH + L + + D+ + IWD R+ + +
Sbjct: 236 AWHLLHESLFGSVADDQKLMIWDTRSNTTS-----------------------KPSHLVD 272
Query: 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---IATKGENINITWAPNGN 219
HT V+ L ++ + +L+T S DKTV +WD R K ++ + K E + W+P+
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 220 TIAVGNKED 228
TI + D
Sbjct: 333 TILASSGTD 341
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 71/180 (39%), Gaps = 33/180 (18%)
Query: 47 YQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105
+ H + V VAW L S + D+ + I+ + HT V+ L ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 106 ATNPDLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSV 144
+ +L+T S DKTV +WD R K ++ +LAS D+ +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 145 AIFALDKKGDLNKE-----------VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++ L K G+ ++ GHT + W+ P ++ + S D ++IW
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 35/193 (18%)
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130
FD + D G+ N ++ RGH L W++ L +AS D TV +WD
Sbjct: 154 FDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD----- 208
Query: 131 SQIMLASGSFDKSVAIFALDKKGDL-NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189
I A K+G + + + ++ GH+ V+ + WH + L + + D+
Sbjct: 209 ---------------INAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 190 VRIWDAR----TQKSQIIATKGENIN-ITWAPNGNTI-AVGNKEDLVTFIDVVKSLPPRE 243
+ IWD R ++ S ++ +N +++ P I A G+ + V D+
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-------- 305
Query: 244 RTLTSRGHLMETR 256
R L + H E+
Sbjct: 306 RNLKLKLHTFESH 318
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 83/175 (47%), Gaps = 30/175 (17%)
Query: 48 QAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALD---KKGDL-NKEVVYRGHTGSVDQL 102
+ H + + ++W+ + L S S D +V ++ ++ K+G + + + ++ GH+ V+ +
Sbjct: 176 RGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDV 235
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQK-----------------------SQIMLASGS 139
WH + L + + D+ + IWD R+ S+ +LA+GS
Sbjct: 236 AWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
DK+VA++ D + K + H + Q+ W N +L+++ D+ + +WD
Sbjct: 296 ADKTVALW--DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 35/193 (18%)
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130
FD + D G+ N ++ RGH L W++ L +AS D TV +WD
Sbjct: 154 FDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD----- 208
Query: 131 SQIMLASGSFDKSVAIFALDKKGDL-NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189
I A K+G + + + ++ GH+ V+ + WH + L + + D+
Sbjct: 209 ---------------INAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 190 VRIWDAR----TQKSQIIATKGENIN-ITWAPNGNTI-AVGNKEDLVTFIDVVKSLPPRE 243
+ IWD R ++ S ++ +N +++ P I A G+ + V D+
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL-------- 305
Query: 244 RTLTSRGHLMETR 256
R L + H E+
Sbjct: 306 RNLKLKLHTFESH 318
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 47 YQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105
+ H + V VAW L S + D+ + I+ + HT V+ L ++
Sbjct: 225 FTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN 284
Query: 106 ATNPDLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSV 144
+ +L+T S DKTV +WD R K ++ +LAS D+ +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 145 AIFALDKKGDLNKE-----------VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++ L K G+ ++ GHT + W+ P ++ + S D +IW
Sbjct: 345 NVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 85/197 (43%), Gaps = 34/197 (17%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
I Q H S+V +AW DG +LASG D V I+ D + + K H +V +
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW--DARSSIPK-FTKTNHNAAVKAVA 266
Query: 104 WHATNPDLLSTASG--DKTVRIWDART--------------------QKSQIMLASGSFD 141
W +LL+T G DK + W+A T +IM G D
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD 326
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW---DAR 196
+++I++ G L K+V H V + A +PD +LSTA+ D+ ++ W D
Sbjct: 327 NNLSIWSYSSSG-LTKQVDIPAHDTRV---LYSALSPDGRILSTAASDENLKFWRVYDGD 382
Query: 197 TQKSQIIATKGENINIT 213
K I TK + +IT
Sbjct: 383 HVKRPIPITKTPSSSIT 399
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 73/191 (38%), Gaps = 32/191 (16%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113
V SV WS DG L+ G + V I+ ++ + L GH V L W N +LS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSW---NRHVLS 190
Query: 114 TASGDKTVRIWDARTQKSQI--------------------MLASGSFDKSVAIFALDKKG 153
+ S + D R QI LASG D V I+ D +
Sbjct: 191 SGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW--DARS 248
Query: 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQIIATKGENI- 210
+ K H +V + W +LL+T G DK + W+A T G +
Sbjct: 249 SIPK-FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVT 307
Query: 211 NITWAPNGNTI 221
++ W+P+ I
Sbjct: 308 SLIWSPHSKEI 318
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 9/146 (6%)
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYR 162
W+A + + + A D++ + + L+ G + V I+ ++ + L
Sbjct: 117 VWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR---TMA 173
Query: 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKG---ENINITWAPNGN 219
GH V L W N +LS+ S + D R QI +G E + W +G
Sbjct: 174 GHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL 230
Query: 220 TIAVGNKEDLVTFIDVVKSLPPRERT 245
+A G +++V D S+P +T
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKT 256
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 37/210 (17%)
Query: 33 DYVKHFNTHNDIKEYQ------AHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGD 85
DY KH + E Q H + + ++W+ + L S S D ++ ++ ++
Sbjct: 157 DYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 216
Query: 86 LNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFD 141
++ + ++ GHT V+ + WH + L + + D+ + IWD R + S + D
Sbjct: 217 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--KPSHTVD 274
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
HT V+ L ++ + +L+T S DKTV +WD R K +
Sbjct: 275 ---------------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313
Query: 202 I---IATKGENINITWAPNGNTIAVGNKED 228
+ + K E + W+P+ TI + D
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTD 343
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 47 YQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105
+ H + V VAW L S + D+ + I+ HT V+ L ++
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286
Query: 106 ATNPDLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSV 144
+ +L+T S DKTV +WD R K ++ +LAS D+ +
Sbjct: 287 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 346
Query: 145 AIFALDKKGDLNKE-----------VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++ L K G+ ++ GHT + W+ P ++ + S D +++W
Sbjct: 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKE-----------VV 91
+ +++H ++ V WS LAS D+ + ++ L K G+ +
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 373
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
+ GHT + W+ P ++ + S D +++W
Sbjct: 374 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 37/210 (17%)
Query: 33 DYVKHFNTHNDIKEYQ------AHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGD 85
DY KH + E Q H + + ++W+ + L S S D ++ ++ ++
Sbjct: 159 DYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 218
Query: 86 LNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFD 141
++ + ++ GHT V+ + WH + L + + D+ + IWD R + S + D
Sbjct: 219 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--KPSHTVD 276
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
HT V+ L ++ + +L+T S DKTV +WD R K +
Sbjct: 277 ---------------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 315
Query: 202 I---IATKGENINITWAPNGNTIAVGNKED 228
+ + K E + W+P+ TI + D
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTD 345
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 47 YQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105
+ H + V VAW L S + D+ + I+ HT V+ L ++
Sbjct: 229 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 288
Query: 106 ATNPDLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSV 144
+ +L+T S DKTV +WD R K ++ +LAS D+ +
Sbjct: 289 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 348
Query: 145 AIFALDKKGDLNKE-----------VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++ L K G+ ++ GHT + W+ P ++ + S D +++W
Sbjct: 349 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKE-----------VV 91
+ +++H ++ V WS LAS D+ + ++ L K G+ +
Sbjct: 316 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 375
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
+ GHT + W+ P ++ + S D +++W
Sbjct: 376 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 37/210 (17%)
Query: 33 DYVKHFNTHNDIKEYQ------AHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGD 85
DY KH + E Q H + + ++W+ + L S S D ++ ++ ++
Sbjct: 161 DYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 220
Query: 86 LNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFD 141
++ + ++ GHT V+ + WH + L + + D+ + IWD R + S + D
Sbjct: 221 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--KPSHTVD 278
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
HT V+ L ++ + +L+T S DKTV +WD R K +
Sbjct: 279 ---------------------AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Query: 202 I---IATKGENINITWAPNGNTIAVGNKED 228
+ + K E + W+P+ TI + D
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTD 347
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 70/180 (38%), Gaps = 33/180 (18%)
Query: 47 YQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105
+ H + V VAW L S + D+ + I+ HT V+ L ++
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 290
Query: 106 ATNPDLLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSV 144
+ +L+T S DKTV +WD R K ++ +LAS D+ +
Sbjct: 291 PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRL 350
Query: 145 AIFALDKKGDLNKE-----------VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++ L K G+ ++ GHT + W+ P ++ + S D +++W
Sbjct: 351 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 12/93 (12%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKE-----------VV 91
+ +++H ++ V WS LAS D+ + ++ L K G+ +
Sbjct: 318 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI 377
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
+ GHT + W+ P ++ + S D +++W
Sbjct: 378 HGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 97
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 158 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 211
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 212 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 75
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 136 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 189
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 92
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 152
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 153 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 206
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 207 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 71
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 131
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 132 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 185
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 186 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 99
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 160 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 213
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 214 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 81
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 142 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 195
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 76
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 136
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 137 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 190
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 191 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 74
Query: 108 NPDLLSTASGDKTVRIWDARTQKS-------------------QIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 134
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 135 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 188
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 189 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 75
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 136 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 189
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 190 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 81
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 142 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 195
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 78
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 139 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 192
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 80
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 141 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 194
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 195 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 78
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 139 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 192
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 81
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 142 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 195
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 196 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 78
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 139 V-KTGMCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 192
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 26/153 (16%)
Query: 62 DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121
D +++ SG D ++ I+ K L + + GHTGSV LC + ++ T S D TV
Sbjct: 142 DDQKIVSGLRDNTIKIW---DKNTLECKRILTGHTGSV--LCLQY-DERVIITGSSDSTV 195
Query: 122 RIWDARTQK-----------------SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
R+WD T + + M+ + S D+S+A++ + D+ V GH
Sbjct: 196 RVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
+V+ + + + +ASGD+T+++W+ T
Sbjct: 256 RAAVNVV---DFDDKYIVSASGDRTIKVWNTST 285
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LA+ S DK + I+ A D K E GH + + W ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 78
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 139 V-KTGKCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 192
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 98/214 (45%), Gaps = 36/214 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H V SV +S +G LAS S DK + I+ A D K E GH + + W ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF----EKTISGHKLGISDVAW-SS 78
Query: 108 NPDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFA 148
+ +LL +AS DKT++IWD + K ++ SGSFD+SV I+
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ K G K + H+ V + ++ + L+ ++S D RIWD T Q + T +
Sbjct: 139 V-KTGMCLKTL--PAHSDPVSAVHFN-RDGSLIVSSSYDGLCRIWD--TASGQCLKTLID 192
Query: 209 NIN-----ITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ N + ++PNG I ++ + D K
Sbjct: 193 DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 31/144 (21%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113
+ SV +S DG+ LA+G+ D+ + I+ ++ + + ++ +GH + L + + D L
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV---MILQGHEQDIYSLDYFPSG-DKLV 181
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
+ SGD+TVRIWD RT + + L+ +VA+ D K
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--------------------- 220
Query: 174 HATNPDLLSTASGDKTVRIWDART 197
++ S D+ VR+WD+ T
Sbjct: 221 ------YIAAGSLDRAVRVWDSET 238
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 31/154 (20%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK---------EVVYRGHTGSV 99
H V+SV ++ DG+ + SGS D+SV ++ L + + EV Y GH V
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV 159
+ N + + + S D+ V WD ++ +ML SV A+ L E
Sbjct: 314 LSVA-TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ--GHRNSVISVAVANGSSLGPEY 370
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++ +T SGD RIW
Sbjct: 371 -------------------NVFATGSGDCKARIW 385
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 27 LVCKIDDY---VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
++ DD+ V ++NT + +++AH + S+A + SGS D +V ++ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF--- 140
L E + GH V + ++ +P ++ D+TV++W L +G
Sbjct: 130 WAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 141 ---------DKSVAIFALDKKGDLNKEV----------VYRGHTGSVDQLCWHATNPDLL 181
DK I A D DL ++ GH +V +H T P ++
Sbjct: 188 NYVDYYPLPDKPYMITASD---DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 182 STASGDKTVRIWDARTQKSQ 201
S S D T++IW++ T K +
Sbjct: 245 S-GSEDGTLKIWNSSTYKVE 263
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 29/172 (16%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
++ T +++ Q + V + + + GS D + +F + K V + H
Sbjct: 41 NYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHP 97
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
+ + H T P +LS S D TV++W+ +AL++
Sbjct: 98 DYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENN-----------------WALEQ----- 134
Query: 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ GH V + ++ +P ++ D+TV++W T G+
Sbjct: 135 ---TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 27 LVCKIDDY---VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
++ DD+ V ++NT + +++AH + S+A + SGS D +V ++ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF--- 140
L E + GH V + ++ +P ++ D+TV++W L +G
Sbjct: 130 WAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 141 ---------DKSVAIFALDKKGDLNKEV----------VYRGHTGSVDQLCWHATNPDLL 181
DK I A D DL ++ GH +V +H T P ++
Sbjct: 188 NYVDYYPLPDKPYMITASD---DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 182 STASGDKTVRIWDARTQKSQ 201
S S D T++IW++ T K +
Sbjct: 245 S-GSEDGTLKIWNSSTYKVE 263
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/172 (18%), Positives = 65/172 (37%), Gaps = 29/172 (16%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
++ T +++ Q + V + + + GS D + +F + K V + H
Sbjct: 41 NYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHP 97
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
+ + H T P +LS S D TV++W+ +AL++
Sbjct: 98 DYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENN-----------------WALEQ----- 134
Query: 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ GH V + ++ +P ++ D+TV++W T G+
Sbjct: 135 ---TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ 183
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 34/179 (18%)
Query: 77 IFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIML 135
+ L K G ++K V + GHT V + W N +++++ S D TV +W+ +
Sbjct: 61 VLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE---------I 111
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
G + L + + GHT V + WH T ++L +A D + +WD
Sbjct: 112 PDGGL-----VLPLRE-----PVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV 161
Query: 196 RTQKSQIIATKGENI------NITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTS 248
T + + T G ++ ++ W+ +G I ++ V I+ PR+ T+ +
Sbjct: 162 GTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE------PRKGTVVA 212
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 32/163 (19%)
Query: 49 AHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKG---DLNKEVV-YRGHTGSVDQLC 103
H + V +AW + +ASGS D +V ++ + G L + V+ GHT V +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
WH T ++L +A D + +WD T + + L D++ + +Y
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP----------------DVHPDTIY-- 180
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK 206
SVD W + + L+ T+ DK VR+ + R K ++A K
Sbjct: 181 ---SVD---W-SRDGALICTSCRDKRVRVIEPR--KGTVVAEK 214
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 14/124 (11%)
Query: 124 WD----ARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNP 178
WD A K ++ S + + L K G ++K V + GHT V + W N
Sbjct: 35 WDSGFCAVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHND 94
Query: 179 DLLSTASGDKTVRIWD------ARTQKSQIIATKGENIN---ITWAPNGNTIAVGNKEDL 229
+++++ S D TV +W+ + +I +G + W P + + D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDN 154
Query: 230 VTFI 233
V +
Sbjct: 155 VILV 158
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 27 LVCKIDDY---VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
++ DD+ V ++NT + +++AH + S+A + SGS D +V ++ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF--- 140
L E + GH V + ++ +P ++ D+TV++W L +G
Sbjct: 130 WAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 141 ---------DKSVAIFALDKKGDLNKEV----------VYRGHTGSVDQLCWHATNPDLL 181
DK I A D DL ++ GH +V +H T P ++
Sbjct: 188 NYVDYYPLPDKPYMITASD---DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 182 STASGDKTVRIWDARTQKSQ 201
S S D T++IW++ T K +
Sbjct: 245 S-GSEDGTLKIWNSSTYKVE 263
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 29/179 (16%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
++ T +++ Q + V + + + GS D + +F + K V + H
Sbjct: 41 NYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHP 97
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
+ + H T P +LS S D TV++W+ +AL++
Sbjct: 98 DYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENN-----------------WALEQ----- 134
Query: 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWA 215
+ GH V + ++ +P ++ D+TV++W T G+ + +
Sbjct: 135 ---TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 31/200 (15%)
Query: 27 LVCKIDDY---VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
++ DD+ V ++NT + +++AH + S+A + SGS D +V ++ +
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF--- 140
L E + GH V + ++ +P ++ D+TV++W L +G
Sbjct: 130 WAL--EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGV 187
Query: 141 ---------DKSVAIFALDKKGDLNKEV----------VYRGHTGSVDQLCWHATNPDLL 181
DK I A D DL ++ GH +V +H T P ++
Sbjct: 188 NYVDYYPLPDKPYMITASD---DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIII 244
Query: 182 STASGDKTVRIWDARTQKSQ 201
S S D T++IW++ T K +
Sbjct: 245 S-GSEDGTLKIWNSSTYKVE 263
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/179 (17%), Positives = 67/179 (37%), Gaps = 29/179 (16%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
++ T +++ Q + V + + + GS D + +F + K V + H
Sbjct: 41 NYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---EKVVDFEAHP 97
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
+ + H T P +LS S D TV++W+ +AL++
Sbjct: 98 DYIRSIAVHPTKPYVLS-GSDDLTVKLWNWENN-----------------WALEQ----- 134
Query: 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWA 215
+ GH V + ++ +P ++ D+TV++W T G+ + +
Sbjct: 135 ---TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV 190
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 37/247 (14%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVA 76
+LL S SQ + D Y T N + S V + A++ G +A G D +
Sbjct: 79 RLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 133
Query: 77 IFALD-KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-- 133
I+ L ++G++ GHTG + C + + + T+SGD T +WD T +
Sbjct: 134 IYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 191
Query: 134 -----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176
+ SG+ D S ++ D + + ++ + GH ++ +C+
Sbjct: 192 TGHTGDVMSLSLAPDTRLFVSGACDASAKLW--DVREGMCRQ-TFTGHESDINAICFFP- 247
Query: 177 NPDLLSTASGDKTVRIWDARTQKSQIIATKGENI-----NITWAPNGNTIAVGNKEDLVT 231
N + +T S D T R++D R + +++ +NI +++++ +G + G +
Sbjct: 248 NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 306
Query: 232 FIDVVKS 238
D +K+
Sbjct: 307 VWDALKA 313
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 37/247 (14%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVA 76
+LL S SQ + D Y T N + S V + A++ G +A G D +
Sbjct: 68 RLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 77 IFALD-KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-- 133
I+ L ++G++ GHTG + C + + + T+SGD T +WD T +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 134 -----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176
+ SG+ D S ++ D + + ++ + GH ++ +C+
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLW--DVREGMCRQ-TFTGHESDINAICFFP- 236
Query: 177 NPDLLSTASGDKTVRIWDARTQKSQIIATKGENI-----NITWAPNGNTIAVGNKEDLVT 231
N + +T S D T R++D R + +++ +NI +++++ +G + G +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 232 FIDVVKS 238
D +K+
Sbjct: 296 VWDALKA 302
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 37/247 (14%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVA 76
+LL S SQ + D Y T N + S V + A++ G +A G D +
Sbjct: 68 RLLVSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 77 IFALD-KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-- 133
I+ L ++G++ GHTG + C + + + T+SGD T +WD T +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 134 -----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176
+ SG+ D S ++ D + + ++ + GH ++ +C+
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLW--DVREGMCRQ-TFTGHESDINAICFFP- 236
Query: 177 NPDLLSTASGDKTVRIWDARTQKSQIIATKGENI-----NITWAPNGNTIAVGNKEDLVT 231
N + +T S D T R++D R + +++ +NI +++++ +G + G +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 232 FIDVVKS 238
D +K+
Sbjct: 296 VWDALKA 302
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 37/247 (14%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVA 76
+LL S SQ + D Y T N + S V + A++ G +A G D +
Sbjct: 68 RLLLSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 77 IFALD-KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-- 133
I+ L ++G++ GHTG + C + + + T+SGD T +WD T +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 134 -----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176
+ SG+ D S ++ D + + ++ + GH ++ +C+
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLW--DVREGMCRQ-TFTGHESDINAICFFP- 236
Query: 177 NPDLLSTASGDKTVRIWDARTQKSQIIATKGENI-----NITWAPNGNTIAVGNKEDLVT 231
N + +T S D T R++D R + +++ +NI +++++ +G + G +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 232 FIDVVKS 238
D +K+
Sbjct: 296 VWDALKA 302
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 34/191 (17%)
Query: 66 LASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
+ S + + L K G ++K V + GHT V + W N +++++ S D TV +W
Sbjct: 50 ICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVW 109
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184
+ + G + L + + GHT V + WH T ++L +A
Sbjct: 110 E---------IPDGGL-----VLPLRE-----PVITLEGHTKRVGIVAWHPTAQNVLLSA 150
Query: 185 SGDKTVRIWDARTQKSQIIATKGENI------NITWAPNGNTIAVGNKEDLVTFIDVVKS 238
D + +WD T + + T G ++ ++ W+ +G I ++ V I+
Sbjct: 151 GCDNVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIE---- 204
Query: 239 LPPRERTLTSR 249
PR+ T+ +
Sbjct: 205 --PRKGTVVAE 213
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 32/163 (19%)
Query: 49 AHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKG---DLNKEVV-YRGHTGSVDQLC 103
H + V +AW + +ASGS D +V ++ + G L + V+ GHT V +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
WH T ++L +A D + +WD T + + L D++ + +Y
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP----------------DVHPDTIY-- 180
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK 206
SVD W + + L+ T+ DK VR+ + R K ++A K
Sbjct: 181 ---SVD---W-SRDGALICTSCRDKRVRVIEPR--KGTVVAEK 214
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 14/124 (11%)
Query: 124 WD----ARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNP 178
WD A K ++ S + + L K G ++K V + GHT V + W N
Sbjct: 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHND 94
Query: 179 DLLSTASGDKTVRIWD------ARTQKSQIIATKGENIN---ITWAPNGNTIAVGNKEDL 229
+++++ S D TV +W+ + +I +G + W P + + D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154
Query: 230 VTFI 233
V +
Sbjct: 155 VILV 158
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 37/247 (14%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVA 76
+LL S SQ + D Y T N + S V + A++ G +A G D +
Sbjct: 68 RLLLSASQDGKLIIWDSY-----TTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICS 122
Query: 77 IFALD-KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI-- 133
I+ L ++G++ GHTG + C + + + T+SGD T +WD T +
Sbjct: 123 IYNLKTREGNVRVSRELAGHTGYLS--CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTF 180
Query: 134 -----------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176
+ SG+ D S ++ D + + ++ + GH ++ +C+
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLW--DVREGMCRQ-TFTGHESDINAICFFP- 236
Query: 177 NPDLLSTASGDKTVRIWDARTQKSQIIATKGENI-----NITWAPNGNTIAVGNKEDLVT 231
N + +T S D T R++D R + +++ +NI +++++ +G + G +
Sbjct: 237 NGNAFATGSDDATCRLFDLRADQ-ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295
Query: 232 FIDVVKS 238
D +K+
Sbjct: 296 VWDALKA 302
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 29/174 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQL 102
+ H +V + W+ DGR LASG D V ++ + +G + H G+V +
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 103 CWHATNPDLLSTASG--DKTVRIW-----------DARTQKSQIM-------LASG-SFD 141
W ++L+T G D+ +RIW DA +Q I+ L SG F
Sbjct: 203 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFA 262
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 193
++ + K + K +GHT V L +PD +++A+ D+T+R+W
Sbjct: 263 QNQLVIW--KYPTMAKVAELKGHTSRVLSL---TMSPDGATVASAAADETLRLW 311
Score = 31.2 bits (69), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LA G+ V ++ + ++ L H+ V L W N +LS+ S + D
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMT---SHSARVGSLSW---NSYILSSGSRSGHIHHHD 135
Query: 195 ARTQKSQIIATKG---ENINITWAPNGNTIAVGNKEDLV 230
R + + G E + WAP+G +A G ++LV
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 174
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H +V + W+ DGR LASG D V ++ + +G + H G+V + W
Sbjct: 228 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 108 NPDLLSTASG--DKTVRIW-----------DARTQKSQIM-------LASG-SFDKSVAI 146
++L+T G D+ +RIW DA +Q I+ L SG F ++ +
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 347
Query: 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 193
+ K + K +GHT V L +PD +++A+ D+T+R+W
Sbjct: 348 --IWKYPTMAKVAELKGHTSRVLSL---TMSPDGATVASAAADETLRLW 391
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LA G+ V ++ + ++ L H+ V L W N +LS+ S + D
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMT---SHSARVGSLSW---NSYILSSGSRSGHIHHHD 215
Query: 195 ARTQKSQIIATKG---ENINITWAPNGNTIAVGNKEDLV 230
R + + G E + WAP+G +A G ++LV
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 254
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 29/169 (17%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H +V + W+ DGR LASG D V ++ + +G + H G+V + W
Sbjct: 239 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 108 NPDLLSTASG--DKTVRIW-----------DARTQKSQIM-------LASG-SFDKSVAI 146
++L+T G D+ +RIW DA +Q I+ L SG F ++ +
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLV 358
Query: 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 193
+ K + K +GHT V L +PD +++A+ D+T+R+W
Sbjct: 359 --IWKYPTMAKVAELKGHTSRVLSL---TMSPDGATVASAAADETLRLW 402
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
LA G+ V ++ + ++ L H+ V L W N +LS+ S + D
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMT---SHSARVGSLSW---NSYILSSGSRSGHIHHHD 226
Query: 195 ARTQKSQIIATKG---ENINITWAPNGNTIAVGNKEDLV 230
R + + G E + WAP+G +A G ++LV
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLV 265
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 34/179 (18%)
Query: 62 DGRRLASGSFDKSVAIFALDKKGDLN----KEVVYRG------HTGSVDQLCWHATNPDL 111
+GR + SG D + ++ L+ + K V G H SV+ + W+ + +
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 112 LSTASGDKTVRIWDARTQKS---------------------QIMLASGSFDKSVAIFALD 150
+++S DKT+++WD T ++ ++A G+ V + L
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL- 173
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGEN 209
K G + + +GH + + W +L+TAS D V++WD R +I N
Sbjct: 174 KSGSCSH--ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
K Q H V V WS DG ++ + S DK+ ++ L N+ + H V + W
Sbjct: 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS----NQAIQIAQHDAPVKTIHW 135
Query: 105 -HATNPDLLSTASGDKTVRIWDARTQKSQIML 135
A N + T S DKT++ WD R+ ++L
Sbjct: 136 IKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 36/172 (20%)
Query: 39 NTHNDIKEYQAHGSKVHSVAW------SCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92
+ HN +K+ + S S+ + G L +GS+ V + + G +
Sbjct: 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA-Q 82
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
+ HTG V +CW + TAS DKT ++WD +
Sbjct: 83 QMHTGPVLDVCWSDDGSKVF-TASCDKTAKMWDLSS------------------------ 117
Query: 153 GDLNKEVVYRGHTGSVDQLCW-HATNPDLLSTASGDKTVRIWDARTQKSQII 203
N+ + H V + W A N + T S DKT++ WD R+ ++
Sbjct: 118 ---NQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
L +GS+ V + + G + + HTG V +CW + TAS DKT ++W
Sbjct: 56 FLIAGSWANDVRCWEVQDSGQTIPKA-QQMHTGPVLDVCWSDDGSKVF-TASCDKTAKMW 113
Query: 194 DARTQKSQIIATKGENI-NITW--APNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRG 250
D + ++ IA + I W APN + + G+ + + F D S P L R
Sbjct: 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERC 173
Query: 251 HLME 254
+ +
Sbjct: 174 YCAD 177
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 25/149 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW-HAT 107
+H +H G RLA+ S D+SV IF + G + + RGH G V Q+ W H
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPM 69
Query: 108 NPDLLSTASGDKTVRIW---DARTQKSQ--------------------IMLASGSFDKSV 144
++L++ S D+ V IW + +KS ++LA GS D ++
Sbjct: 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129
Query: 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
++ +G + + HT + + W
Sbjct: 130 SLLTYTGEGQWEVKKINNAHTIGCNAVSW 158
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 8/116 (6%)
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW-HATNPDLLST 183
DA+ LA+ S D+SV IF + G + + RGH G V Q+ W H ++L++
Sbjct: 18 DAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADL-RGHEGPVWQVAWAHPMYGNILAS 76
Query: 184 ASGDKTVRIW---DARTQKSQIIATKGENIN-ITWAPN--GNTIAVGNKEDLVTFI 233
S D+ V IW + +KS A ++N + WAP+ G +A G+ + ++ +
Sbjct: 77 CSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLL 132
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 56/259 (21%)
Query: 29 CKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWS--CDGRRLASGSFDKSVAIFALDK 82
C D VK F+ N I + + H V VAW+ G LAS S+D+ V I+ ++
Sbjct: 31 CSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR-EE 89
Query: 83 KGDLNKEVVYRGHTGSVDQLCWHATNPDL-LSTASGDKTVRI--------WDART----- 128
G K + GH SV+ +CW + L L+ S D + + W+ +
Sbjct: 90 NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149
Query: 129 ------------------------QKSQIM--LASGSFDKSVAIFALDKKGDLNKEVVYR 162
QK + ASG D + ++ ++ G +E
Sbjct: 150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209
Query: 163 GHTGSVDQLCWHAT---NPDLLSTASGDKTVRIWDARTQKSQIIATKGEN------INIT 213
H+ V + W + +++ S D V IW S + K + +++
Sbjct: 210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVS 269
Query: 214 WAPNGNTIAVGNKEDLVTF 232
W+ N +AV ++ VT
Sbjct: 270 WSITANILAVSGGDNKVTL 288
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG--HTGSVDQLCWHAT 107
H +KV V+WS D RLA+GS D SV ++ ++K D ++ +G SV+ + W
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD--HPIIIKGAHAMSSVNSVIW--L 590
Query: 108 NPDLLSTASGDKTVRIWD 125
N + +A D ++ W+
Sbjct: 591 NETTIVSAGQDSNIKFWN 608
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 32/141 (22%)
Query: 65 RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVR 122
R+ SGS D +VAIF + + + HT V + + NPD L ++ GD T
Sbjct: 162 RIISGSDDNTVAIF---EGPPFKFKSTFGEHTKFVHSVRY---NPDGSLFASTGGDGT-- 213
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--L 180
I+L +G +F D ++ H+GSV L W +PD
Sbjct: 214 ----------IVLYNGVDGTKTGVFEDDSLKNV-------AHSGSVFGLTW---SPDGTK 253
Query: 181 LSTASGDKTVRIWDARTQKSQ 201
+++AS DKT++IW+ T K +
Sbjct: 254 IASASADKTIKIWNVATLKVE 274
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 30/147 (20%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H +++ SVA+S +G L + + V +++ +L + HT V + W +P
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW---SP 546
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG--HTGS 167
D + LA+GS D SV ++ ++K D ++ +G S
Sbjct: 547 D---------------------NVRLATGSLDNSVIVWNMNKPSD--HPIIIKGAHAMSS 583
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWD 194
V+ + W N + +A D ++ W+
Sbjct: 584 VNSVIW--LNETTIVSAGQDSNIKFWN 608
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 51/262 (19%), Positives = 95/262 (36%), Gaps = 44/262 (16%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79
P+G + Y + D + Y H + S G ASG +V I+
Sbjct: 28 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 87
Query: 80 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT---VRIWDARTQKSQIM-- 134
+ + K + +G V + W + + + + G + V ++D T +
Sbjct: 88 TTQTTHILKTTIPV-FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQ 146
Query: 135 ----------------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 178
+ SGS D +VAIF + + + HT V + + NP
Sbjct: 147 ARAMNSVDFKPSRPFRIISGSDDNTVAIF---EGPPFKFKSTFGEHTKFVHSVRY---NP 200
Query: 179 D--LLSTASGDKTVRIWDA---------RTQKSQIIATKGENINITWAPNGNTIAVGNKE 227
D L ++ GD T+ +++ + +A G +TW+P+G IA + +
Sbjct: 201 DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD 260
Query: 228 DLVTF-----IDVVKSLPPRER 244
+ + V K++P R
Sbjct: 261 KTIKIWNVATLKVEKTIPVGTR 282
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHAT 107
AH +H G+RLA+ S DK++ IF ++ G+ +K + GH G V ++ W
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDW--A 62
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+P K +LAS S+D V I+ ++ G ++ V+ H+ S
Sbjct: 63 HP--------------------KFGTILASCSYDGKVLIWK-EENGRWSQIAVHAVHSAS 101
Query: 168 VDQLCW--HATNPDLLSTASGDKTVRIWDAR---TQKSQIIATKGENIN-ITWAP 216
V+ + W H P LL AS D V + + + T II +N +WAP
Sbjct: 102 VNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 28/166 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
H + V V + DGRR+ SG++D V ++ + + L+ +GHT V L + +
Sbjct: 237 GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH---TLQGHTNRVYSLQFDGIH 291
Query: 109 PDLLSTASGDKTVRIWDART-----------------QKSQIMLASGSFDKSVAIFALDK 151
+ + S D ++R+WD T + +L SG+ D +V I+ +
Sbjct: 292 ---VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT 348
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
L H +V L N + + T+S D TV++WD +T
Sbjct: 349 GQCLQTLQGPNKHQSAVTCL---QFNKNFVITSSDDGTVKLWDLKT 391
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 29/187 (15%)
Query: 66 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+ SGS D+++ ++ + ++ GHT +V C H ++S S D T+R+WD
Sbjct: 172 IISGSTDRTLKVWNAETGECIH---TLYGHTSTVR--CMHLHEKRVVS-GSRDATLRVWD 225
Query: 126 ARTQKSQIML-----------------ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 168
T + +L SG++D V ++ + + L+ +GHT V
Sbjct: 226 IETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLH---TLQGHTNRV 282
Query: 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKED 228
L + + + + S D ++R+WD T T +++ N + GN +
Sbjct: 283 YSLQFDGIH---VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADS 339
Query: 229 LVTFIDV 235
V D+
Sbjct: 340 TVKIWDI 346
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK----------- 130
++G+L V +GH V N + + S D T+++W A T K
Sbjct: 104 RRGELKSPKVLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 161
Query: 131 ---SQI---MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184
SQ+ ++ SGS D+++ ++ + ++ GHT +V C H ++S
Sbjct: 162 VWSSQMRDNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVR--CMHLHEKRVVS-G 215
Query: 185 SGDKTVRIWDART 197
S D T+R+WD T
Sbjct: 216 SRDATLRVWDIET 228
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 39/221 (17%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRR----LASGSFDKSVAIFAL-DKKGDLNKEVVYRGHTGS 98
K+ QAH + SVAW + + + +GS D V ++ D++ DL + GH
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSL--EGHQLG 82
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
V + T P + +++S D +R+WD K + +G D F+ D ++
Sbjct: 83 VVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPD-----SQY 136
Query: 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENI-NITWAPN 217
+ H G V ++ SG +K + T+G+ I +I ++P+
Sbjct: 137 LATGTHVGKV----------NIFGVESG-----------KKEYSLDTRGKFILSIAYSPD 175
Query: 218 GNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258
G +A G + ++ D+ + T GH M RSL
Sbjct: 176 GKYLASGAIDGIINIFDIATG----KLLHTLEGHAMPIRSL 212
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQ--AHGSKVHSVAWSC 61
PV + SP+ + L +G+ V K V F + KEY G + S+A+S
Sbjct: 122 PVDAWTLAFSPDSQYLATGTH---VGK----VNIFGVESGKKEYSLDTRGKFILSIAYSP 174
Query: 62 DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 121
DG+ LASG+ D + IF + L+ GH + L + + + LL TAS D +
Sbjct: 175 DGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMPIRSLTF-SPDSQLLVTASDDGYI 230
Query: 122 RIWDAR 127
+I+D +
Sbjct: 231 KIYDVQ 236
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 31/174 (17%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHAT 107
AH +H G+R+A+ S DK++ IF ++ G+ +K + GH G V ++ W
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDW--A 62
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+P K +LAS S+D V I+ ++ G ++ V+ H+ S
Sbjct: 63 HP--------------------KFGTILASCSYDGKVMIWK-EENGRWSQIAVHAVHSAS 101
Query: 168 VDQLCW--HATNPDLLSTASGDK--TVRIWDARTQKSQIIATKGENIN-ITWAP 216
V+ + W H P LL +S K V + T II +N +WAP
Sbjct: 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHAT 107
AH +H G+RLA+ S DK++ IF ++ G+ +K + GH G V ++ W
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDW--A 64
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+P K +LAS S+D V I+ ++ G ++ V+ H+ S
Sbjct: 65 HP--------------------KFGTILASCSYDGKVLIWK-EENGRWSQIAVHAVHSAS 103
Query: 168 VDQLCW--HATNPDLLSTASGDKTVRIWDAR---TQKSQIIATKGENIN-ITWAP 216
V+ + W H P LL AS D V + + + T II +N +WAP
Sbjct: 104 VNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 78/175 (44%), Gaps = 33/175 (18%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHAT 107
AH +H G+RLA+ S DK++ IF ++ G+ +K + GH G V ++ W
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDW--A 62
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+P K +LAS S+D V I+ ++ G ++ V+ H+ S
Sbjct: 63 HP--------------------KFGTILASCSYDGKVLIWK-EENGRWSQIAVHAVHSAS 101
Query: 168 VDQLCW--HATNPDLLSTASGDKTVRIWDAR---TQKSQIIATKGENIN-ITWAP 216
V+ + W H P LL AS D V + + + T II +N +WAP
Sbjct: 102 VNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 43/247 (17%)
Query: 18 LLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75
++ S QF L D ++ ++ T + + H V SVA+S D R++ SGS DK++
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 76 AIFALDKKGDLNKEVVYRGHTGSVD--QLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 133
++ + G V H+ V + +++NP ++S DK V++W+ K +
Sbjct: 130 KLW--NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS-CGWDKLVKVWNLANCKLKT 186
Query: 134 -------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174
+ ASG D ++ L++ K + ++ LC
Sbjct: 187 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE----GKHLYTLDGGDIINALC-F 241
Query: 175 ATNPDLLSTASGDKTVRIWDARTQ------KSQIIATKG-----ENINITWAPNGNTIAV 223
+ N L A+G +++IWD + K ++I+T + ++ W+ +G T+
Sbjct: 242 SPNRYWLCAATG-PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 300
Query: 224 GNKEDLV 230
G ++LV
Sbjct: 301 GYTDNLV 307
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 37/233 (15%)
Query: 10 TPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASG 69
TP+ P+ L S + ++ K+ ++ + + H V V S DG+ SG
Sbjct: 24 TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--RALRGHSHFVSDVVISSDGQFALSG 81
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA--- 126
S+D ++ ++ L G + V GHT V + + + N ++S S DKT+++W+
Sbjct: 82 SWDGTLRLWDL-TTGTTTRRFV--GHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGV 137
Query: 127 -------------------RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
S ++ S +DK V ++ L + + + GHTG
Sbjct: 138 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTNHIGHTGY 194
Query: 168 VDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQIIATKGENIN-ITWAPN 217
++ + +PD ASG D +WD K G+ IN + ++PN
Sbjct: 195 LNTV---TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN 244
Score = 34.3 bits (77), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 28/126 (22%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIW------------------------DART 128
+GH G V Q+ PD++ +AS DKT+ +W D
Sbjct: 12 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 71
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 188
SGS+D ++ ++ L G + V GHT V + + + N ++S S DK
Sbjct: 72 SSDGQFALSGSWDGTLRLWDL-TTGTTTRRFV--GHTKDVLSVAFSSDNRQIVS-GSRDK 127
Query: 189 TVRIWD 194
T+++W+
Sbjct: 128 TIKLWN 133
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 108/247 (43%), Gaps = 43/247 (17%)
Query: 18 LLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75
++ S QF L D ++ ++ T + + H V SVA+S D R++ SGS DK++
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 76 AIFALDKKGDLNKEVVYRGHTGSVD--QLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 133
++ + G V H+ V + +++NP ++S DK V++W+ K +
Sbjct: 153 KLW--NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS-CGWDKLVKVWNLANCKLKT 209
Query: 134 -------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174
+ ASG D ++ L++ K + ++ LC+
Sbjct: 210 NHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE----GKHLYTLDGGDIINALCF- 264
Query: 175 ATNPDLLSTASGDKTVRIWDARTQ------KSQIIATKG-----ENINITWAPNGNTIAV 223
+ N L A+G +++IWD + K ++I+T + ++ W+ +G T+
Sbjct: 265 SPNRYWLCAATG-PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323
Query: 224 GNKEDLV 230
G ++LV
Sbjct: 324 GYTDNLV 330
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 97/233 (41%), Gaps = 37/233 (15%)
Query: 10 TPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASG 69
TP+ P+ L S + ++ K+ ++ + + H V V S DG+ SG
Sbjct: 47 TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ--RALRGHSHFVSDVVISSDGQFALSG 104
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA--- 126
S+D ++ ++ L G + V GHT V + + + N ++S S DKT+++W+
Sbjct: 105 SWDGTLRLWDL-TTGTTTRRFV--GHTKDVLSVAFSSDNRQIVS-GSRDKTIKLWNTLGV 160
Query: 127 -------------------RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
S ++ S +DK V ++ L + + + GHTG
Sbjct: 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL---ANCKLKTNHIGHTGY 217
Query: 168 VDQLCWHATNPDLLSTASG--DKTVRIWDARTQKSQIIATKGENIN-ITWAPN 217
++ + +PD ASG D +WD K G+ IN + ++PN
Sbjct: 218 LNTV---TVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPN 267
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 28/126 (22%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIW------------------------DART 128
+GH G V Q+ PD++ +AS DKT+ +W D
Sbjct: 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 94
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 188
SGS+D ++ ++ L G + V GHT V + + + N ++S S DK
Sbjct: 95 SSDGQFALSGSWDGTLRLWDL-TTGTTTRRFV--GHTKDVLSVAFSSDNRQIVS-GSRDK 150
Query: 189 TVRIWD 194
T+++W+
Sbjct: 151 TIKLWN 156
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+K + H V V + DG +AS S D++V ++ + K + E+ R H V+ +
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAEL--REHRHVVECIS 283
Query: 104 WH-ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYR 162
W ++ +S A+G +T ++ K L SGS DK++ ++ + L V
Sbjct: 284 WAPESSYSSISEATGSET-----KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV--- 335
Query: 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
GH V + +H+ +LS A DKT+R+WD + ++
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKR 371
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 85/181 (46%), Gaps = 33/181 (18%)
Query: 66 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+ S S D ++ ++ + GD + + +GHT SV + + + LL++ S D T+++WD
Sbjct: 123 MVSASEDATIKVWDYET-GDFERTL--KGHTDSVQDISFDHSGK-LLASCSADMTIKLWD 178
Query: 126 ------ARTQKSQ--------IM-----LASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
RT IM + S S DK++ ++ + + G K + GH
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV-QTGYCVK--TFTGHRE 235
Query: 167 SVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENI--NITWAPNGNTIA 222
V + N D L+++ S D+TVR+W T++ + + ++ I+WAP + +
Sbjct: 236 WVRMV---RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSS 292
Query: 223 V 223
+
Sbjct: 293 I 293
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 31/134 (23%)
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122
G L SGS DK++ ++ + L V GH V + +H+ +LS A DKT+R
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGGKFILSCAD-DKTLR 363
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182
+WD + ++ L H V L +H T P ++
Sbjct: 364 VWDYKNKRCMKTL--------------------------NAHEHFVTSLDFHKTAPYVV- 396
Query: 183 TASGDKTVRIWDAR 196
T S D+TV++W+ R
Sbjct: 397 TGSVDQTVKVWECR 410
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 96/222 (43%), Gaps = 50/222 (22%)
Query: 14 PEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDK 73
P + ++ S S+ + K+ DY T + + + H V +++ G+ LAS S D
Sbjct: 118 PVFSVMVSASEDATI-KVWDY----ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADM 172
Query: 74 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART----- 128
++ ++ D +G ++ GH +V + N D + +AS DKT+++W+ +T
Sbjct: 173 TIKLW--DFQGFECIRTMH-GHDHNVSSVS-IMPNGDHIVSASRDKTIKMWEVQTGYCVK 228
Query: 129 --------------QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW- 173
+ ++AS S D++V ++ + K + E+ R H V+ + W
Sbjct: 229 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAEL--REHRHVVECISWA 285
Query: 174 ---------HATNPD---------LLSTASGDKTVRIWDART 197
AT + L + S DKT+++WD T
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 40/185 (21%)
Query: 18 LLPSGSQFHLVCKIDDYVKHFNTHNDI--KEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75
+L S QF L D ++ ++ + + + H V SVA+S D R++ S S D+++
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTI 496
Query: 76 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS----TASGDKTVRIWDARTQKS 131
++ + G+ K + G G D + +P+ L +AS DKTV++W+ K
Sbjct: 497 KLW--NTLGEC-KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL 553
Query: 132 QIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG--DKT 189
+ LA GHTG V + A +PD ASG D
Sbjct: 554 RSTLA--------------------------GHTGYVSTV---AVSPDGSLCASGGKDGV 584
Query: 190 VRIWD 194
V +WD
Sbjct: 585 VLLWD 589
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 28/195 (14%)
Query: 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
+ H V V S DG+ SGS+D + ++ L + + GHT V + +
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRR---FVGHTKDVLSVAF 480
Query: 105 HATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
N ++S AS D+T+++W+ + + + + G+ +++ V
Sbjct: 481 SLDNRQIVS-ASRDRTIKLWNTLGE---------------CKYTISEGGEGHRDWV---- 520
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENINITWAPNGNTIA 222
S + + P ++S AS DKTV++W+ K S + G + +P+G+ A
Sbjct: 521 --SCVRFSPNTLQPTIVS-ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCA 577
Query: 223 VGNKEDLVTFIDVVK 237
G K+ +V D+ +
Sbjct: 578 SGGKDGVVLLWDLAE 592
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 22/137 (16%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIW-----DARTQKSQIMLASGS-FDKSVAI 146
R HT V + N D++ +AS DK++ +W D +Q L S F + V +
Sbjct: 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVL 438
Query: 147 -----FALD-------KKGDLNKEVVYR---GHTGSVDQLCWHATNPDLLSTASGDKTVR 191
FAL + DL V R GHT V + + N ++S AS D+T++
Sbjct: 439 SSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVS-ASRDRTIK 497
Query: 192 IWDARTQKSQIIATKGE 208
+W+ + I+ GE
Sbjct: 498 LWNTLGECKYTISEGGE 514
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV--VYRGHTGSVDQLCWHA 106
H VH V + GR +A+ S D+ + +F LDK N E+ +R H S+ + W
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-NWELSDSWRAHDSSIVAIDW-- 65
Query: 107 TNPD---LLSTASGDKTVRIWD 125
+P+ ++++AS DKTV++W+
Sbjct: 66 ASPEYGRIIASASYDKTVKLWE 87
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD---LLSTASGDKT 189
+A+ S D+ + +F LDK N E+ +R H S+ + W +P+ ++++AS DKT
Sbjct: 26 VATCSSDQHIKVFKLDKDTS-NWELSDSWRAHDSSIVAIDW--ASPEYGRIIASASYDKT 82
Query: 190 VRIWDARTQKSQIIA-----------TKGENINITWAPN--GNTIAVGNKEDLVTFIDVV 236
V++W+ + + +KG ++ +AP G +A + ++ D +
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Query: 237 KSLPPRERTLTSRGHLM 253
+ R TLTS ++
Sbjct: 143 EPSDLRSWTLTSEMKVL 159
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP---DLLSTASGDKT 120
+LA + ++++ I+ K G L+ GH + + W + L++T D
Sbjct: 183 EKLAVSALEQAI-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241
Query: 121 VRIWDARTQKSQI-----MLASGSFDKSVAIFALDKKG--------------DLNKEVV- 160
+RI+ + S + + S FD S + +D +G +L E++
Sbjct: 242 IRIFKITEKLSPLASEESLTNSNMFDNSADV-DMDAQGRSDSNTEEKAELQSNLQVELLS 300
Query: 161 -YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
+ H G V + W+ T +LS+A D VR+W A
Sbjct: 301 EHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKA 335
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV--VYRGHTGSVDQLCWHA 106
H VH V + GR +A+ S D+ + +F LDK N E+ +R H S+ + W
Sbjct: 7 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-NWELSDSWRAHDSSIVAIDW-- 63
Query: 107 TNPD---LLSTASGDKTVRIWD 125
+P+ ++++AS DKTV++W+
Sbjct: 64 ASPEYGRIIASASYDKTVKLWE 85
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD---LLSTASGDKT 189
+A+ S D+ + +F LDK N E+ +R H S+ + W +P+ ++++AS DKT
Sbjct: 24 VATCSSDQHIKVFKLDKDTS-NWELSDSWRAHDSSIVAIDW--ASPEYGRIIASASYDKT 80
Query: 190 VRIWDARTQKSQIIA-----------TKGENINITWAPN--GNTIAVGNKEDLVTFIDVV 236
V++W+ + + +KG ++ +AP G +A + ++ D +
Sbjct: 81 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 140
Query: 237 KSLPPRERTLTSRGHLM 253
+ R TLTS ++
Sbjct: 141 EPSDLRSWTLTSEMKVL 157
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP---DLLSTASGDKT 120
+LA + ++++ I+ K G L+ GH + + W + L++T D
Sbjct: 181 EKLAVSALEQAI-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 239
Query: 121 VRIWDARTQKSQI-----MLASGSFDKSVAIFALDKKG--------------DLNKEVV- 160
+RI+ + S + + S FD S + +D +G +L E++
Sbjct: 240 IRIFKITEKLSPLASEESLTNSNMFDNSADV-DMDAQGRSDSNTEEKAELQSNLQVELLS 298
Query: 161 -YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
+ H G V + W+ T +LS+A D VR+W A
Sbjct: 299 EHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKA 333
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 31/174 (17%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHAT 107
AH +H G+R A+ S DK++ IF ++ G+ +K + GH G V ++ W
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVE--GETHKLIDTLTGHEGPVWRVDW--A 62
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+P K +LAS S+D V I+ ++ G ++ V+ H+ S
Sbjct: 63 HP--------------------KFGTILASCSYDGKVXIWK-EENGRWSQIAVHAVHSAS 101
Query: 168 VDQLCW--HATNPDLLSTASGDK--TVRIWDARTQKSQIIATKGENIN-ITWAP 216
V+ + W H P LL +S K V + T II +N +WAP
Sbjct: 102 VNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 8/82 (9%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV--VYRGHTGSVDQLCWHA 106
H VH V + GR +A+ S D+ + +F LDK N E+ +R H S+ + W
Sbjct: 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-NWELSDSWRAHDSSIVAIDW-- 65
Query: 107 TNPD---LLSTASGDKTVRIWD 125
+P+ ++++AS DKTV++W+
Sbjct: 66 ASPEYGRIIASASYDKTVKLWE 87
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 21/137 (15%)
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD---LLSTASGDKT 189
+A+ S D+ + +F LDK N E+ +R H S+ + W +P+ ++++AS DKT
Sbjct: 26 VATCSSDQHIKVFKLDKDTS-NWELSDSWRAHDSSIVAIDW--ASPEYGRIIASASYDKT 82
Query: 190 VRIWDARTQKSQIIA-----------TKGENINITWAPN--GNTIAVGNKEDLVTFIDVV 236
V++W+ + + +KG ++ +AP G +A + ++ D +
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Query: 237 KSLPPRERTLTSRGHLM 253
+ R TLTS ++
Sbjct: 143 EPSDLRSWTLTSEXKVL 159
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 27/156 (17%)
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP---DLLSTASGDKT 120
+LA + ++++ I+ K G L+ GH + + W + L++T D
Sbjct: 183 EKLAVSALEQAI-IYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGR 241
Query: 121 VRIWDARTQKSQI-----MLASGSFDKSVAIFALDKKG--------------DLNKEVV- 160
+RI+ + S + + S FD S + D +G +L E++
Sbjct: 242 IRIFKITEKLSPLASEESLTNSNXFDNSADV-DXDAQGRSDSNTEEKAELQSNLQVELLS 300
Query: 161 -YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
+ H G V + W+ T +LS+A D VR+W A
Sbjct: 301 EHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKA 335
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 36/223 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ ++ H V + DG S S+DK++ ++ + + V ++ SVD
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-- 109
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF-------------DKSVAIFA-- 148
++ + S DKT+++W + Q +L + D SV I +
Sbjct: 110 --DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 167
Query: 149 ---LDKKGDLNK---EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 200
+ K +LN+ E + GH +++ L +PD L+++A D + +W+ +K+
Sbjct: 168 NDKMVKAWNLNQFQIEADFIGHNSNINTLT---ASPDGTLIASAGKDGEIMLWNLAAKKA 224
Query: 201 QI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242
++ + E ++ ++PN +A + F SL P+
Sbjct: 225 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF-----SLDPQ 262
Score = 34.3 bits (77), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 43/108 (39%), Gaps = 22/108 (20%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
GH G V L A P+LL +AS DKT+ W + + SF
Sbjct: 8 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF------------ 55
Query: 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+GH+ V A LS AS DKT+R+WD T ++
Sbjct: 56 ---------KGHSHIVQDCTLTADGAYALS-ASWDKTLRLWDVATGET 93
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 36/223 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ ++ H V + DG S S+DK++ ++ + + V ++ SVD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-- 115
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF-------------DKSVAIFA-- 148
++ + S DKT+++W + Q +L + D SV I +
Sbjct: 116 --DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 149 ---LDKKGDLNK---EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 200
+ K +LN+ E + GH +++ L +PD L+++A D + +W+ +K+
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLT---ASPDGTLIASAGKDGEIMLWNLAAKKA 230
Query: 201 QI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242
++ + E ++ ++PN +A + F SL P+
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF-----SLDPQ 268
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 26/118 (22%)
Query: 87 NKEVVYRG----HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDK 142
N+ +V RG H G V L A P+LL +AS DKT+ W + + SF
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-- 61
Query: 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+GH+ V A LS AS DKT+R+WD T ++
Sbjct: 62 -------------------KGHSHIVQDCTLTADGAYALS-ASWDKTLRLWDVATGET 99
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 36/223 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ ++ H V + DG S S+DK++ ++ + + V ++ SVD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-- 115
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF-------------DKSVAIFA-- 148
++ + S DKT+++W + Q +L + D SV I +
Sbjct: 116 --DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 149 ---LDKKGDLNK---EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 200
+ K +LN+ E + GH +++ L +PD L+++A D + +W+ +K+
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLT---ASPDGTLIASAGKDGEIMLWNLAAKKA 230
Query: 201 Q-IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242
++ + E ++ ++PN +A + F SL P+
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF-----SLDPQ 268
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 26/118 (22%)
Query: 87 NKEVVYRG----HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDK 142
N+ +V RG H G V L A P+LL +AS DKT+ W + + SF
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-- 61
Query: 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+GH+ V Q C + +AS DKT+R+WD T ++
Sbjct: 62 -------------------KGHSHIV-QDCTLTADGAYALSASWDKTLRLWDVATGET 99
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 36/223 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ ++ H V + DG S S+DK++ ++ + + V ++ SVD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-- 115
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF-------------DKSVAIFA-- 148
++ + S DKT+++W + Q +L + D SV I +
Sbjct: 116 --DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 149 ---LDKKGDLNK---EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 200
+ K +LN+ E + GH +++ L +PD L+++A D + +W+ +K+
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLT---ASPDGTLIASAGKDGEIMLWNLAAKKA 230
Query: 201 QI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242
++ + E ++ ++PN +A + F SL P+
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF-----SLDPQ 268
Score = 34.7 bits (78), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 26/121 (21%)
Query: 84 GDLNKEVVYRG----HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGS 139
G N+ +V RG H G V L A P+LL +AS DKT+ W + + S
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS 60
Query: 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
F +GH+ V Q C + +AS DKT+R+WD T +
Sbjct: 61 F---------------------KGHSHIV-QDCTLTADGAYALSASWDKTLRLWDVATGE 98
Query: 200 S 200
+
Sbjct: 99 T 99
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 95/223 (42%), Gaps = 36/223 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ ++ H V + DG S S+DK++ ++ + + V ++ SVD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDI-- 115
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF-------------DKSVAIFA-- 148
++ + S DKT+++W + Q +L + D SV I +
Sbjct: 116 --DKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 149 ---LDKKGDLNK---EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 200
+ K +LN+ E + GH +++ L +PD L+++A D + +W+ +K+
Sbjct: 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLT---ASPDGTLIASAGKDGEIMLWNLAAKKA 230
Query: 201 QI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242
++ + E ++ ++PN +A + F SL P+
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF-----SLDPQ 268
Score = 34.7 bits (78), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 26/121 (21%)
Query: 84 GDLNKEVVYRG----HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGS 139
G N+ +V RG H G V L A P+LL +AS DKT+ W + + S
Sbjct: 1 GASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRS 60
Query: 140 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
F +GH+ V A LS AS DKT+R+WD T +
Sbjct: 61 F---------------------KGHSHIVQDCTLTADGAYALS-ASWDKTLRLWDVATGE 98
Query: 200 S 200
+
Sbjct: 99 T 99
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 96/236 (40%), Gaps = 41/236 (17%)
Query: 19 LPSGSQFHLVCKIDDYVKHFNTHNDIKEYQ--AHGSKVHSVAWSCDGRRLASGSFDKSVA 76
L + F + D ++ +N N +Y+ H V SVA+S D R++ SG D ++
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Query: 77 IFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLSTASGDKTVRIWDARTQKSQIML 135
++ + KG+ + HT V + + + + ++ + D V++WD L
Sbjct: 135 VWNV--KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD---------L 183
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 193
A+G + +GHT V + +PD L +++ D R+W
Sbjct: 184 ATGRLVTDL-----------------KGHTNYVTSV---TVSPDGSLCASSDKDGVARLW 223
Query: 194 DARTQKSQIIATKGENIN-ITWAPNGNTIAVGNKEDLVTF----IDVVKSLPPRER 244
D ++ G IN I ++PN + ++ + F D++ L P +
Sbjct: 224 DLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQ 279
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 36/223 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ ++ H V + DG S S+DK++ ++ + + V ++ SVD
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDI-- 115
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF-------------DKSVAIFALD 150
+ + S DKT+++W + Q +L + D SV I +
Sbjct: 116 --DKKASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG 173
Query: 151 -----KKGDLNK---EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 200
K +LN+ E + GH +++ L +PD L+++A D + +W+ +K+
Sbjct: 174 NDKXVKAWNLNQFQIEADFIGHNSNINTLT---ASPDGTLIASAGKDGEIXLWNLAAKKA 230
Query: 201 QI-IATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPR 242
++ + E ++ ++PN +A + F SL P+
Sbjct: 231 XYTLSAQDEVFSLAFSPNRYWLAAATATGIKVF-----SLDPQ 268
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 26/118 (22%)
Query: 87 NKEVVYRG----HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDK 142
N+ +V RG H G V L A P+LL +AS DKT+ W + + SF
Sbjct: 4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF-- 61
Query: 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+GH+ V Q C + +AS DKT+R+WD T ++
Sbjct: 62 -------------------KGHSHIV-QDCTLTADGAYALSASWDKTLRLWDVATGET 99
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 128
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
Y GH ++++L +H +P+LL + S D +R+W+ +T
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 43/247 (17%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDK--KGDLNKEVVYRGH 95
N N + + H S V +V ++ LASG + + I+ ++K + N + G
Sbjct: 101 NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ 160
Query: 96 T-GSVDQ---LCWHATNPDLLSTASGDKTVRIWDARTQKSQIML---------------- 135
+ SVD+ L W+ + + ++A IWD + +K I L
Sbjct: 161 SMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVV 220
Query: 136 ------------ASGS-FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182
A+GS D S+ I+ L + + + + +GH + L W + LL
Sbjct: 221 EWHPKNSTRVATATGSDNDPSILIWDL-RNANTPLQTLNQGHQKGILSLDWCHQDEHLLL 279
Query: 183 TASGDKTVRIWDART--QKSQIIATKGENINITWAPNGNTI----AVGNKEDLVTFIDVV 236
++ D TV +W+ + Q SQ A +AP + + NK ++ T ++
Sbjct: 280 SSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339
Query: 237 KSLPPRE 243
+L +E
Sbjct: 340 NTLDEQE 346
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 49/194 (25%)
Query: 8 FHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSCDG 63
H K P+ +P + H DY F+T + + + H + V +V S G
Sbjct: 229 LHVWKLPKESSVPDHGEEH------DYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG 280
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123
+ SGS+D ++ ++ + + L + GHT + + +S AS D T+RI
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCL---YILSGHTDRIYSTIYDHERKRCIS-ASMDTTIRI 336
Query: 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPDLL 181
WD N E++Y +GHT V L + L
Sbjct: 337 WDLE----------------------------NGELMYTLQGHTALVGLL---RLSDKFL 365
Query: 182 STASGDKTVRIWDA 195
+A+ D ++R WDA
Sbjct: 366 VSAAADGSIRGWDA 379
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 51/182 (28%)
Query: 66 LASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
+ +G+ DK + ++ +++KK L GH G V L + + +L + S D+TVR+W
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQ----LSGHDGGVWALKY--AHGGILVSGSTDRTVRVW 188
Query: 125 DAR---------------------TQKSQIMLASGSFDKSVAIFALDKKG---DLNKE-- 158
D + K+ + +GS D ++ ++ L K+ D +E
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 159 ---------------VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII 203
V RGH SV + H +++ + S D T+ +WD K I
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHMASVRTVSGHG---NIVVSGSYDNTLIVWDVAQMKCLYI 305
Query: 204 AT 205
+
Sbjct: 306 LS 307
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 30/104 (28%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
RGH SV N + T + DK +R++D+ +K + L+
Sbjct: 118 RGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLS---------------- 159
Query: 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196
GH G V L + + +L + S D+TVR+WD +
Sbjct: 160 ----------GHDGGVWALKY--AHGGILVSGSTDRTVRVWDIK 191
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 134 MLASGSFDKSVAIFAL---DKKGDLN-KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189
+L SGS DK+V I+ L ++ G GH V L N +S+ S DKT
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKT 99
Query: 190 VRIWDARTQKS--QIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVV 236
+R+WD RT + + + + E ++ ++P+ I E + +++
Sbjct: 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 90/219 (41%), Gaps = 42/219 (19%)
Query: 62 DGRRLASGSFDKSVAIFAL---DKKGDLN-KEVVYRGHTGSVDQLCWHATNPDLLSTASG 117
D L SGS DK+V I+ L ++ G GH V L N +S+ S
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SW 96
Query: 118 DKTVRIWDART---------QKSQI-----------MLASGSFDKSVAIFAL-------- 149
DKT+R+WD RT +S++ +L++G+ ++ + ++ +
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-EREIKLWNILGECKFSS 155
Query: 150 ---DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK 206
+ D V Y S +++ A ++ D +++W+ Q
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAP---YFASVGWDGRLKVWNTNFQIRYTFKAH 212
Query: 207 GENIN-ITWAPNGNTIAVGNKEDLVTFIDVVK-SLPPRE 243
N+N ++ +PNG IA G K+ + D++ + P RE
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQRE 251
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 55/102 (53%), Gaps = 12/102 (11%)
Query: 32 DDYVKHFNTHNDIK-EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV 90
D +K +NT+ I+ ++AH S V+ ++ S +G+ +A+G DK + I+ + LN
Sbjct: 193 DGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI-----LNLTY 247
Query: 91 VYRGHTG--SVDQLCWHATNPDLLSTASG-DKTVRIWDARTQ 129
R +++Q+ A NP L A G D+ V+I++ TQ
Sbjct: 248 PQREFDAGSTINQI---AFNPKLQWVAVGTDQGVKIFNLMTQ 286
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 81/199 (40%), Gaps = 22/199 (11%)
Query: 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
K + H S+V+SVA+S D R++ S ++ + ++ + + + H+ V + +
Sbjct: 112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFS-SAEKENHSDWVSCVRY 170
Query: 105 HATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
++ +A+ + Q AS +D + ++ + ++ H
Sbjct: 171 SP----IMKSAN----------KVQPFAPYFASVGWDGRLKVW----NTNFQIRYTFKAH 212
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDA-RTQKSQIIATKGENIN-ITWAPNGNTIA 222
+V+ L + N ++T DK + IWD Q G IN I + P +A
Sbjct: 213 ESNVNHLS-ISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVA 271
Query: 223 VGNKEDLVTFIDVVKSLPP 241
VG + + F + +S P
Sbjct: 272 VGTDQGVKIFNLMTQSKAP 290
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 23/208 (11%)
Query: 7 QFHT-PKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQA-HGSKVHSVAWSCDGR 64
+HT P SP Y P +VC + V I ++A H V ++ + D
Sbjct: 138 HYHTGPGSPSYSSAPCTG---VVCNNPEIVT-VGEDGRINLFRADHKEAVRTID-NADSS 192
Query: 65 RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
L + +F ++ I ++ G L K +R P + + +GD+
Sbjct: 193 TLHAVTFLRTPEILTVNSIGQL-KIWDFRQQ----------GNEPSQILSLTGDRVPLHC 241
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 184
R Q ++A+G D ++I+ + ++G + ++ + H + ++ +H +NP+ L T
Sbjct: 242 VDRHPNQQHVVATGGQDGMLSIWDV-RQGTMPVSLL-KAHEAEMWEVHFHPSNPEHLFTC 299
Query: 185 SGDKTVRIWDART---QKSQIIATKGEN 209
S D ++ WDA T +KS + G +
Sbjct: 300 SEDGSLWHWDASTDVPEKSSLFHQGGRS 327
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 49/194 (25%)
Query: 8 FHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSCDG 63
H K P+ +P + H DY F+T + + + H + V +V S G
Sbjct: 229 LHVWKLPKESSVPDHGEEH------DYPLVFHTPEENPYFVGVLRGHXASVRTV--SGHG 280
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123
+ SGS+D ++ ++ + + L + GHT + + +S AS D T+RI
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCL---YILSGHTDRIYSTIYDHERKRCIS-ASXDTTIRI 336
Query: 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPDLL 181
WD N E+ Y +GHT V L + L
Sbjct: 337 WDLE----------------------------NGELXYTLQGHTALVGLL---RLSDKFL 365
Query: 182 STASGDKTVRIWDA 195
+A+ D ++R WDA
Sbjct: 366 VSAAADGSIRGWDA 379
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 48/134 (35%), Gaps = 42/134 (31%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
V RGH SV + H +++ + S D T+ +WD K +L+
Sbjct: 265 VLRGHXASVRTVSGHG---NIVVSGSYDNTLIVWDVAQXKCLYILS-------------- 307
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENI 210
GHT + + +S AS D T+RIWD EN
Sbjct: 308 ------------GHTDRIYSTIYDHERKRCIS-ASXDTTIRIWDL------------ENG 342
Query: 211 NITWAPNGNTIAVG 224
+ + G+T VG
Sbjct: 343 ELXYTLQGHTALVG 356
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 51/182 (28%)
Query: 66 LASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
+ +G+ DK + ++ +++KK L GH G V L + + +L + S D+TVR+W
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQ----LSGHDGGVWALKY--AHGGILVSGSTDRTVRVW 188
Query: 125 DAR---------------------TQKSQIMLASGSFDKSVAIFALDKKG---DLNKE-- 158
D + K+ + +GS D ++ ++ L K+ D +E
Sbjct: 189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 159 ---------------VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII 203
V RGH SV + H +++ + S D T+ +WD K I
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHXASVRTVSGHG---NIVVSGSYDNTLIVWDVAQXKCLYI 305
Query: 204 AT 205
+
Sbjct: 306 LS 307
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 30/104 (28%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
RGH SV N + T + DK +R++D+ +K + L+
Sbjct: 118 RGHXTSVITCLQFEDN--YVITGADDKXIRVYDSINKKFLLQLS---------------- 159
Query: 153 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196
GH G V L + + +L + S D+TVR+WD +
Sbjct: 160 ----------GHDGGVWALKY--AHGGILVSGSTDRTVRVWDIK 191
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT---WAPNGNTIA 222
G V + W+ T P +++ D ++ + T+ ++ AT + +T W+P G +A
Sbjct: 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQV-TETVKVCATLPSTVAVTSVCWSPKGKQLA 208
Query: 223 VGNK 226
VG +
Sbjct: 209 VGKQ 212
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT---WAPNGNTIA 222
G V + W+ T P +++ D ++ + T+ ++ AT + +T W+P G +A
Sbjct: 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQV-TETVKVCATLPSTVAVTSVCWSPKGKQLA 208
Query: 223 VGNK 226
VG +
Sbjct: 209 VGKQ 212
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT---WAPNGNTIA 222
G V + W+ T P +++ D ++ + T+ ++ AT + +T W+P G +A
Sbjct: 150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQV-TETVKVCATLPSTVAVTSVCWSPKGKQLA 208
Query: 223 VGNK 226
VG +
Sbjct: 209 VGKQ 212
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 33/152 (21%)
Query: 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
+ + GS V W D + + G ++ ++ + +K K + GH G + L +
Sbjct: 200 ENHSGDGSLGVDVEWVDDDKFVIPGP-KGAIFVYQITEKTPTGKLI---GHHGPISVLEF 255
Query: 105 HATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+ TN LLS AS D T+RIW G+ N + + GH
Sbjct: 256 NDTNKLLLS-ASDDGTLRIWHG--------------------------GNGNSQNCFYGH 288
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196
+ S+ W D + + S D +VR+W +
Sbjct: 289 SQSIVSASW--VGDDKVISCSMDGSVRLWSLK 318
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
GH G + L ++ TN LLS AS D T+RIW SQ
Sbjct: 245 GHHGPISVLEFNDTNKLLLS-ASDDGTLRIWHGGNGNSQ 282
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 110 DLLSTASGDKTVRIW--DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
++L + T+ IW S M+ +G +V + +D K N R H
Sbjct: 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN----LRMHKKK 252
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDAR 196
V + + L+TAS D+TV+IWD R
Sbjct: 253 VTHVALNPCCDWFLATASVDQTVKIWDLR 281
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 60 SCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119
S R + +G +V + +D K N R H V + + L+TAS D+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDGKELWN----LRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 120 TVRIWDAR 127
TV+IWD R
Sbjct: 274 TVKIWDLR 281
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 110 DLLSTASGDKTVRIW--DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
++L + T+ IW S M+ +G +V + +D K N R H
Sbjct: 197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN----LRMHKKK 252
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDAR 196
V + + L+TAS D+TV+IWD R
Sbjct: 253 VTHVALNPCCDWFLATASVDQTVKIWDLR 281
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 60 SCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119
S R + +G +V + +D K N R H V + + L+TAS D+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDGKELWN----LRMHKKKVTHVALNPCCDWFLATASVDQ 273
Query: 120 TVRIWDAR 127
TV+IWD R
Sbjct: 274 TVKIWDLR 281
>pdb|1XI0|A Chain A, X-Ray Crystal Structure Of Wild-Type Xerocomus
Chrysenteron Lectin Xcl
pdb|1XI0|B Chain B, X-Ray Crystal Structure Of Wild-Type Xerocomus
Chrysenteron Lectin Xcl
Length = 145
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNT 220
RG+ V++ WH N S A+G T+ + T + ++TKGE I T
Sbjct: 18 RGYFSIVEKTVWHFANGGTWSEANGAHTLTQGGSGTSGVLRFLSTKGERI---------T 68
Query: 221 IAVGNKEDLVTFIDVVKSLPPRERTL 246
+AVG + + DVV L P E L
Sbjct: 69 VAVG-VHNYKRWCDVVTGLKPDETAL 93
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 31.2 bits (69), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 110 DLLSTASGDKTVRIW--DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
++L + T+ IW S M+ +G +V + +D K N R H
Sbjct: 198 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN----LRMHKKK 253
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDAR 196
V + + L+TAS D+TV+IWD R
Sbjct: 254 VTHVALNPCCDWFLATASVDQTVKIWDLR 282
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 60 SCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119
S R + +G +V + +D K N R H V + + L+TAS D+
Sbjct: 219 SASSRMVVTGDNVGNVILLNMDGKELWN----LRMHKKKVTHVALNPCCDWFLATASVDQ 274
Query: 120 TVRIWDAR 127
TV+IWD R
Sbjct: 275 TVKIWDLR 282
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 37/188 (19%)
Query: 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAI---FALDKKGDLNKEVVYRGHTGSVDQ 101
+ + HG+KV + W D RR+ S S D V + F +K+ + +
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWV-------M 110
Query: 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
C +A + ++ D ++ K++ M A KSVA+
Sbjct: 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAK---KKSVAM--------------- 152
Query: 162 RGHTGSVDQLCWHATNPDL-LSTASGDKTVRIWDART-QKSQIIATKGENI---NITWAP 216
HT + + TN D+ + TASGD T +WD + Q Q G ++ ++ +
Sbjct: 153 --HTNYLSACSF--TNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208
Query: 217 NGNTIAVG 224
GNT G
Sbjct: 209 TGNTFVSG 216
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 19/124 (15%)
Query: 119 KTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV---YRGHTGSVDQLCWHA 175
TV + + TQ SGS D + ++ DL ++VV YR H V +
Sbjct: 131 STVSVLSSGTQA-----VSGSKDICIKVW------DLAQQVVLSSYRAHAAQVTCVAASP 179
Query: 176 TNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENI--NITWAPNGNTIAV-GNKEDLV 230
+ + S D + +WD R K SQI + + ++ W P + + V G++ V
Sbjct: 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239
Query: 231 TFID 234
+ +D
Sbjct: 240 SLVD 243
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV---YRGHTGSVDQLCWHA 106
H V +V+ G + SGS D + ++ DL ++VV YR H V +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVW------DLAQQVVLSSYRAHAAQVTCVAASP 179
Query: 107 TNPDLLSTASGDKTVRIWDARTQK--SQIML-ASGSFDKSVA 145
+ + S D + +WD R K SQI A G S+A
Sbjct: 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA 221
>pdb|2IIP|A Chain A, Human Nicotinamide N-Methyltransferase
pdb|2IIP|B Chain B, Human Nicotinamide N-Methyltransferase
pdb|2IIP|C Chain C, Human Nicotinamide N-Methyltransferase
pdb|2IIP|D Chain D, Human Nicotinamide N-Methyltransferase
pdb|3ROD|A Chain A, Methyltransferase
pdb|3ROD|B Chain B, Methyltransferase
pdb|3ROD|C Chain C, Methyltransferase
pdb|3ROD|D Chain D, Methyltransferase
Length = 283
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 25/144 (17%)
Query: 18 LLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAI 77
L+P GS D Y+ HFN + +++Y GS+ HS A S + L F I
Sbjct: 14 LVPRGSMESGFTSKDTYLSHFNPRDYLEKYYKFGSR-HS-AESQILKHLLKNLFK----I 67
Query: 78 FALDK-KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ---- 132
F LD KGDL ++ G ++ Q LLS K + + D Q Q
Sbjct: 68 FCLDGVKGDLLIDI---GSGPTIYQ---------LLSACESFKEIVVTDYSDQNLQELEK 115
Query: 133 -IMLASGSFDKS-VAIFALDKKGD 154
+ A +FD S V + D +G+
Sbjct: 116 WLKAAPAAFDWSPVVTYVCDLEGN 139
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 31/180 (17%)
Query: 46 EYQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
E+Q + ++W +GRRL G + +F G+ EV GH+ ++
Sbjct: 111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV--SGHSQRINACHL 168
Query: 105 HATNPDLLSTASGDKTVRIWDA---------RTQKSQIMLA--------SGSF------D 141
+ P T D +V + RT Q SG F D
Sbjct: 169 KQSRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228
Query: 142 KSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
+ ++ F K G+ K + G + L W + +T D T+R+WD T K
Sbjct: 229 RKISCFD-GKSGEFLKYIEDDQEPVQGGIFALSW--LDSQKFATVGADATIRVWDVTTSK 285
>pdb|2WAA|A Chain A, Structure Of A Family Two Carbohydrate Esterase From
Cellvibrio Japonicus
Length = 347
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 15/85 (17%)
Query: 115 ASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG----------DLNKEVVYR-- 162
A DK R W+AR +S ML + + D V + +G D N Y+
Sbjct: 152 AGEDKNTRWWNAR--ESYGMLTAKALDAQVQLVCWGGRGLIRSWNGKTDDANLPDFYQFT 209
Query: 163 -GHTGSVDQLCWHATNPDLLSTASG 186
G TG Q H PDL+ +A G
Sbjct: 210 LGDTGQAPQWDHHRYQPDLIISAIG 234
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 102/252 (40%), Gaps = 43/252 (17%)
Query: 16 YKLLPSGSQFHLVCKIDDY--VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD- 72
Y + +G QF ++ DY F H + + S AWS DG +LA +F+
Sbjct: 148 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFES 200
Query: 73 -KSVAIFALDKKGDLNKEVVYRGHTGSV------DQLCWH-----ATNPDLLSTASGDKT 120
+S + G + + + H G+ +L + + N ++ ASG +
Sbjct: 201 GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI 259
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT--GSVDQLCWHAT-N 177
++ D R+ ++ D F D+ G + VY+ + G+ ++ W + N
Sbjct: 260 RQVTDGRSNNTEPTWFP---DSQNLAFTSDQAG---RPQVYKVNINGGAPQRITWEGSQN 313
Query: 178 PD-----------LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
D ++S+ G + + D T Q++++ + + APNG + +
Sbjct: 314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS 373
Query: 227 EDLVTFIDVVKS 238
+ + + +++V +
Sbjct: 374 QGMGSVLNLVST 385
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 102/252 (40%), Gaps = 43/252 (17%)
Query: 16 YKLLPSGSQFHLVCKIDDY--VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD- 72
Y + +G QF ++ DY F H + + S AWS DG +LA +F+
Sbjct: 148 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFES 200
Query: 73 -KSVAIFALDKKGDLNKEVVYRGHTGSV------DQLCWH-----ATNPDLLSTASGDKT 120
+S + G + + + H G+ +L + + N ++ ASG +
Sbjct: 201 GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI 259
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT--GSVDQLCWHAT-N 177
++ D R+ ++ D F D+ G + VY+ + G+ ++ W + N
Sbjct: 260 RQVTDGRSNNTEPTWFP---DSQNLAFTSDQAG---RPQVYKVNINGGAPQRITWEGSQN 313
Query: 178 PD-----------LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
D ++S+ G + + D T Q++++ + + APNG + +
Sbjct: 314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS 373
Query: 227 EDLVTFIDVVKS 238
+ + + +++V +
Sbjct: 374 QGMGSVLNLVST 385
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 102/252 (40%), Gaps = 43/252 (17%)
Query: 16 YKLLPSGSQFHLVCKIDDY--VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD- 72
Y + +G QF ++ DY F H + + S AWS DG +LA +F+
Sbjct: 148 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFES 200
Query: 73 -KSVAIFALDKKGDLNKEVVYRGHTGSV------DQLCWH-----ATNPDLLSTASGDKT 120
+S + G + + + H G+ +L + + N ++ ASG +
Sbjct: 201 GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI 259
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT--GSVDQLCWHAT-N 177
++ D R+ ++ D F D+ G + VY+ + G+ ++ W + N
Sbjct: 260 RQVTDGRSNNTEPTWFP---DSQNLAFTSDQAG---RPQVYKVNINGGAPQRITWEGSQN 313
Query: 178 PD-----------LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
D ++S+ G + + D T Q++++ + + APNG + +
Sbjct: 314 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVLYSSS 373
Query: 227 EDLVTFIDVVKS 238
+ + + +++V +
Sbjct: 374 QGMGSVLNLVST 385
>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 102/252 (40%), Gaps = 43/252 (17%)
Query: 16 YKLLPSGSQFHLVCKIDDY--VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD- 72
Y + +G QF ++ DY F H + + S AWS DG +LA +F+
Sbjct: 169 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFES 221
Query: 73 -KSVAIFALDKKGDLNKEVVYRGHTGSV------DQLCWH-----ATNPDLLSTASGDKT 120
+S + G + + + H G+ +L + + N ++ ASG +
Sbjct: 222 GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI 280
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT--GSVDQLCWHAT-N 177
++ D R+ ++ D F D+ G + VY+ + G+ ++ W + N
Sbjct: 281 RQVTDGRSNNTEPTWFP---DSQNLAFTSDQAG---RPQVYKVNINGGAPQRITWEGSQN 334
Query: 178 PD-----------LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
D ++S+ G + + D T Q++++ + + APNG + +
Sbjct: 335 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS 394
Query: 227 EDLVTFIDVVKS 238
+ + + +++V +
Sbjct: 395 QGMGSVLNLVST 406
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 48/252 (19%), Positives = 102/252 (40%), Gaps = 43/252 (17%)
Query: 16 YKLLPSGSQFHLVCKIDDY--VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD- 72
Y + +G QF ++ DY F H + + S AWS DG +LA +F+
Sbjct: 170 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFES 222
Query: 73 -KSVAIFALDKKGDLNKEVVYRGHTGSV------DQLCWH-----ATNPDLLSTASGDKT 120
+S + G + + + H G+ +L + + N ++ ASG +
Sbjct: 223 GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QI 281
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT--GSVDQLCWHAT-N 177
++ D R+ ++ D F D+ G + VY+ + G+ ++ W + N
Sbjct: 282 RQVTDGRSNNTEPTWFP---DSQNLAFTSDQAG---RPQVYKVNINGGAPQRITWEGSQN 335
Query: 178 PD-----------LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
D ++S+ G + + D T Q++++ + + APNG + +
Sbjct: 336 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS 395
Query: 227 EDLVTFIDVVKS 238
+ + + +++V +
Sbjct: 396 QGMGSVLNLVST 407
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 31/180 (17%)
Query: 46 EYQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
E+Q + ++W +GRRL G + +F G+ EV GH+ ++
Sbjct: 111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEV--SGHSQRINACHL 168
Query: 105 HATNPDLLSTASGDKTVRIWDA---------RTQKSQIMLA--------SGSF------D 141
+ P T D +V + RT Q SG F D
Sbjct: 169 KQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228
Query: 142 KSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
+ ++ F K G+ K + G + L W + +T D T+R+WD T K
Sbjct: 229 RKISCFD-GKSGEFLKYIEDDQEPVQGGIFALSW--LDSQKFATVGADATIRVWDVTTSK 285
>pdb|2WZS|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
Length = 738
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 205 TKGENINITWA----PNGNTIAVGNKEDLVTFIDVVKSLPP 241
T+G + + TW+ P G +G KE VT +D V ++PP
Sbjct: 513 TEGNSWHYTWSVFHDPQGLIDLMGGKEMFVTMMDSVFAVPP 553
>pdb|2WVZ|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW1|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
Length = 744
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 205 TKGENINITWA----PNGNTIAVGNKEDLVTFIDVVKSLPP 241
T+G + + TW+ P G +G KE VT +D V ++PP
Sbjct: 513 TEGNSWHYTWSVFHDPQGLIDLMGGKEMFVTMMDSVFAVPP 553
>pdb|2XFB|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
Length = 391
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 92 YRGHTGSVD---QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
YR HT S ++ + N + + A+GD V + DA+ + A FD + ++
Sbjct: 122 YRAHTASASAKLRVLYQGNNITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVVY- 180
Query: 149 LDKKGDL 155
KGD+
Sbjct: 181 ---KGDV 184
>pdb|3N40|F Chain F, Crystal Structure Of The Immature Envelope Glycoprotein
Complex Of Chikungunya Virus
Length = 393
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 92 YRGHTGSVD---QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
YR HT S ++ + N + + A+GD V + DA+ + A FD + ++
Sbjct: 124 YRAHTASASAKLRVLYQGNNITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVVY- 182
Query: 149 LDKKGDL 155
KGD+
Sbjct: 183 ---KGDV 186
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 16 YKLLPSGSQFHLVCKIDDY--VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD- 72
Y + +G QF ++ DY F H + + S AWS DG +LA +F+
Sbjct: 142 YVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQ-------PLXSPAWSPDGSKLAYVTFES 194
Query: 73 -KSVAIFALDKKGDLNKEVVYRGHTGS 98
+S + G + + + H G+
Sbjct: 195 GRSALVIQTLANGAVRQVASFPRHNGA 221
>pdb|2XFC|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
Length = 439
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 92 YRGHTGSVD---QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
YR HT S ++ + N + + A+GD V + DA+ + A FD + ++
Sbjct: 122 YRAHTASASAKLRVLYQGNNITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVVY- 180
Query: 149 LDKKGDL 155
KGD+
Sbjct: 181 ---KGDV 184
>pdb|3N41|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Spontaneous Cleavage) Of Chikungunya Virus.
pdb|3N42|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Furin Cleavage) Of Chikungunya Virus.
pdb|3N43|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage) Of Chikungunya Virus.
pdb|3N44|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
Virus
Length = 473
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 92 YRGHTGSVD---QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
YR HT S ++ + N + + A+GD V + DA+ + A FD + ++
Sbjct: 144 YRAHTASASAKLRVLYQGNNITVTAYANGDHAVTVKDAKFIVGPMSSAWTPFDNKIVVY- 202
Query: 149 LDKKGDL 155
KGD+
Sbjct: 203 ---KGDV 206
>pdb|3GBR|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
Mutant D83g F149s From S. Solfataricus
pdb|3GBR|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) Double
Mutant D83g F149s From S. Solfataricus
Length = 345
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 111 LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT--GSV 168
L+ ++ D ++I A K + + + +VA+FALD+ GD + Y H S+
Sbjct: 261 LIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSL 320
Query: 169 DQL 171
D+L
Sbjct: 321 DKL 323
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Query: 178 PDLLSTASGDKTVRIWDARTQKSQIIA----TKGENINITWAPNGNTIAVGN 225
P+++ T S D TV++WD R QK +A +GEN W T+A GN
Sbjct: 130 PEIV-TGSRDGTVKVWDPR-QKDDPVANMEPVQGENKRDCW-----TVAFGN 174
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1O17|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd)
pdb|1GXB|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1GXB|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
Pyrophosphate And Magnesium
pdb|1ZXY|A Chain A, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|B Chain B, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|C Chain C, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZXY|D Chain D, Anthranilate Phosphoribosyltransferase From Sulfolobus
Solfataricus In Complex With Prpp And Magnesium
pdb|1ZYK|A Chain A, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|B Chain B, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|C Chain C, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|1ZYK|D Chain D, Anthranilate Phosphoribosyltransferase In Complex With
Prpp, Anthranilate And Magnesium
pdb|2GVQ|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|B Chain B, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|C Chain C, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
pdb|2GVQ|D Chain D, Anthranilate Phosphoribosyl-Transferase (Trpd) From S.
Solfataricus In Complex With Anthranilate
Length = 345
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 111 LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT--GSV 168
L+ ++ D ++I A K + + + +VA+FALD+ GD + Y H S+
Sbjct: 261 LIVNSAEDSAIKIVRAFLGKDEHVAEFIKINTAVALFALDRVGDFREGYEYADHLIEKSL 320
Query: 169 DQL 171
D+L
Sbjct: 321 DKL 323
>pdb|1X99|A Chain A, X-Ray Crystal Structure Of Xerocomus Chrysenteron Lectin
Xcl At 1.4 Angstroms Resolution, Mutated At Q46m, V54m,
L58m
pdb|1X99|B Chain B, X-Ray Crystal Structure Of Xerocomus Chrysenteron Lectin
Xcl At 1.4 Angstroms Resolution, Mutated At Q46m, V54m,
L58m
Length = 145
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIIATKGENINITWAPNGNT 220
RG+ V++ WH N S A+G + + +TKGE I T
Sbjct: 18 RGYFSIVEKTVWHFANGGTWSEANGAHTLTXGGSGTSGXLRFXSTKGERI---------T 68
Query: 221 IAVGNKEDLVTFIDVVKSLPPRERTL 246
+AVG + + DVV L P E L
Sbjct: 69 VAVG-VHNYKRWCDVVTGLKPDETAL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,201,908
Number of Sequences: 62578
Number of extensions: 338835
Number of successful extensions: 1530
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 336
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)