RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9316
(264 letters)
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 116 bits (293), Expect = 1e-30
Identities = 43/226 (19%), Positives = 81/226 (35%), Gaps = 44/226 (19%)
Query: 13 SPEYKLLP---SGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWS-CDGRRLAS 68
+P++ L SG LV + + ++ H + V +AW + +AS
Sbjct: 43 NPKFMALICEASGGGAFLVLPLGKTGR---VDKNVPLVCGHTAPVLDIAWCPHNDNVIAS 99
Query: 69 GSFDKSVAIFALDKKGDLNK----EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
GS D +V ++ + G + + GHT V + WH T ++L +A D + +W
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLS 182
D T + + L H ++ + W + D L+
Sbjct: 160 DVGTGAAVLTLG------------------------PDVHPDTIYSVDW---SRDGALIC 192
Query: 183 TASGDKTVRIWDARTQKSQIIATKG----ENINITWAPNGNTIAVG 224
T+ DK VR+ + R + ++ + G + G
Sbjct: 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTG 238
Score = 99.0 bits (247), Expect = 4e-24
Identities = 42/204 (20%), Positives = 74/204 (36%), Gaps = 28/204 (13%)
Query: 54 VHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDL 111
A + L S + + L K G ++K V + GHT V + W N ++
Sbjct: 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV 96
Query: 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
+++ S D TV +W+ + GHT V +
Sbjct: 97 IASGSEDCTVMVWEIPDGGLV-------------------LPLREPVITLEGHTKRVGIV 137
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQI-IATKG--ENIN-ITWAPNGNTIAVGNKE 227
WH T ++L +A D + +WD T + + + + I + W+ +G I ++
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 228 DLVTFIDVVKSLPPRERTLTSRGH 251
V I+ K E+ R H
Sbjct: 198 KRVRVIEPRKGTVVAEKD---RPH 218
Score = 92.1 bits (229), Expect = 1e-21
Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 47/227 (20%)
Query: 17 KLLPSGSQFHLVC--KIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRR-LASGSFDK 73
++ SGS+ V +I D + + H +V VAW + L S D
Sbjct: 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN 154
Query: 74 SVAIFALD-KKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 130
+ ++ D G + H ++ + W + D L+ T+ DK VR+ + R
Sbjct: 155 VILVW--DVGTGAAVLTLGPDVHPDTIYSVDW---SRDGALICTSCRDKRVRVIEPRKGT 209
Query: 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLST---AS 185
R H G+ + +L+T
Sbjct: 210 VVAEK-------------------------DRPHEGTRPVHA--VFVSEGKILTTGFSRM 242
Query: 186 GDKTVRIWDARTQKSQIIATKGENIN----ITWAPNGNTIAVGNKED 228
++ V +WD + + + + + + + P+ N + + K D
Sbjct: 243 SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGD 289
Score = 67.4 bits (165), Expect = 4e-13
Identities = 18/157 (11%), Positives = 47/157 (29%), Gaps = 30/157 (19%)
Query: 51 GSKVHSVAWSCDGRRLASG---SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
G++ + +G+ L +G ++ VA++ K + + + V +
Sbjct: 220 GTRPVHAVFVSEGKILTTGFSRMSERQVALW-DTKHLEEPLSLQELDTSSGVLLPFFDPD 278
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ GD ++R ++ ++ + S S
Sbjct: 279 TNIVYLCGKGDSSIRYFEITSEAPFLHYLSM-----------------------FSSKES 315
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204
+ + P + + R + +K + IA
Sbjct: 316 QRGMGYM---PKRGLEVNKCEIARFYKLHERKCEPIA 349
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 117 bits (294), Expect = 2e-30
Identities = 43/218 (19%), Positives = 89/218 (40%), Gaps = 38/218 (17%)
Query: 18 LLPSGSQFHLVCKIDDYVKHFNTHND------IKEYQAHGSKVHSVAWSCDGR-RLASGS 70
++ + + V + DY KH + + H + + ++W+ + L S S
Sbjct: 143 VIATKTPSSDV-LVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201
Query: 71 FDKSVAIFALDKKGDLNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126
D ++ ++ ++ ++ + ++ GHT V+ + WH + L + + D+ + IWD
Sbjct: 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT 261
Query: 127 RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 186
R + + HT V+ L ++ + +L+T S
Sbjct: 262 RNNNTSKPSHT-----------------------VDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 187 DKTVRIWDARTQKSQIIATKGENINIT---WAPNGNTI 221
DKTV +WD R K ++ + + I W+P+ TI
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETI 336
Score = 105 bits (264), Expect = 2e-26
Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 17/162 (10%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKEV-VYRGHT 96
NT AH ++V+ ++++ LA+GS DK+VA++ L L ++ + H
Sbjct: 265 NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN---LKLKLHSFESHK 321
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
+ Q+ W N +L+++ D+ + +WD + +F
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLF--------- 372
Query: 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 198
++ GHT + W+ P ++ + S D +++W
Sbjct: 373 ---IHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411
Score = 76.7 bits (189), Expect = 3e-16
Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 17/146 (11%)
Query: 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN-KEVVYRGHTGSVDQLCWHATNPDL 111
+ SV + + +D F + + H G V++ + N +
Sbjct: 84 LIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACV 143
Query: 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
++T + V ++D S+ + G+ ++ RGH L
Sbjct: 144 IATKTPSSDVLVFDYTKHPSK----------------PEPSGECQPDLRLRGHQKEGYGL 187
Query: 172 CWHATNPDLLSTASGDKTVRIWDART 197
W+ L +AS D T+ +WD
Sbjct: 188 SWNPNLNGYLLSASDDHTICLWDINA 213
Score = 47.0 bits (112), Expect = 3e-06
Identities = 12/102 (11%), Positives = 31/102 (30%), Gaps = 1/102 (0%)
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN-KEVVYRGHTGSVDQLC 172
T+ + I + +D F + + H G V++
Sbjct: 76 TSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRAR 135
Query: 173 WHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW 214
+ N +++T + V ++D S+ + ++
Sbjct: 136 YMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL 177
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 114 bits (287), Expect = 2e-30
Identities = 47/251 (18%), Positives = 81/251 (32%), Gaps = 50/251 (19%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW-HATN 108
H +H G RLA+ S D+SV IF + G RGH G V Q+ W H
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVR-NGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 109 PDLLSTASGDKTVRIWDARTQKSQI-----------------------MLASGSFDKSVA 145
++L++ S D+ V IW + +LA GS D +++
Sbjct: 71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAIS 130
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWH----------------ATNPDLLSTASGDKT 189
+ +G + + HT + + W ++ D
Sbjct: 131 LLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL 190
Query: 190 VRIWDARTQKSQIIATKGENIN-----ITWAPN----GNTIAVGNKEDLVTFIDVVKSLP 240
+++W K E + + WAP+ +TIA +++ V +
Sbjct: 191 IKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS 250
Query: 241 PRERTLTSRGH 251
Sbjct: 251 NTWSPKLLHKF 261
Score = 106 bits (268), Expect = 1e-27
Identities = 45/238 (18%), Positives = 80/238 (33%), Gaps = 64/238 (26%)
Query: 44 IKEYQAHGSKVHSVAWS--CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
I + + H V VAW+ G LAS S+D+ V I+ + G K + GH SV+
Sbjct: 50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE-ENGTWEKSHEHAGHDSSVNS 108
Query: 102 LCWHATNPD----LLSTASGDKTVRIWDARTQKSQ------------------------- 132
+CW P +L+ S D + + +
Sbjct: 109 VCWA---PHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPG 165
Query: 133 --------------IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 178
ASG D + ++ ++ G +E H+ V + W P
Sbjct: 166 SLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA---P 222
Query: 179 D------LLSTASGDKTVRIWDART-----QKSQIIATKGENIN-ITWAPNGNTIAVG 224
+++ S D V IW +++ + + ++W+ N +AV
Sbjct: 223 SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280
Score = 88.5 bits (220), Expect = 1e-20
Identities = 29/181 (16%), Positives = 52/181 (28%), Gaps = 53/181 (29%)
Query: 44 IKEYQAHGSKVHSVAWSCDG-----------------RRLASGSFDKSVAIFALDKKGDL 86
K AH ++V+W+ +R ASG D + ++ ++ G
Sbjct: 143 KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW 202
Query: 87 NKEVVYRGHTGSVDQLCWHATNPD------LLSTASGDKTVRIWDARTQKSQIMLASGSF 140
+E H+ V + W P +++ S D V IW S
Sbjct: 203 KEEQKLEAHSDWVRDVAWA---PSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPK--- 256
Query: 141 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 198
+ V + W + +L+ + GD V +W
Sbjct: 257 -------------------LLHKFNDVVWHVSW---SITANILAVSGGDNKVTLWKESVD 294
Query: 199 K 199
Sbjct: 295 G 295
Score = 48.4 bits (116), Expect = 7e-07
Identities = 18/90 (20%), Positives = 24/90 (26%), Gaps = 13/90 (14%)
Query: 16 YKLLPSGSQFHLVCKIDDYVKHFNTHND------IKEYQAHGSKVHSVAWSCDGRRLASG 69
+ S SQ D V + + K V V+WS LA
Sbjct: 228 TSTIASCSQ-------DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVS 280
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSV 99
D V ++ G GSV
Sbjct: 281 GGDNKVTLWKESVDGQWVCISDVNKGQGSV 310
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 116 bits (292), Expect = 2e-30
Identities = 29/225 (12%), Positives = 73/225 (32%), Gaps = 37/225 (16%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHG--SKVHSVAWSCDGRRLAS 68
+ + + S D ++ + K + SK + + WS + + +A
Sbjct: 32 TVSGTVDANFST-------DSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAG 84
Query: 69 GSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127
+ S+ +++ ++ + + + H+ SV + ++A ++L++ + + IWD
Sbjct: 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144
Query: 128 TQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 187
+ V L W+ + + ++A
Sbjct: 145 KCTESPSNYTPLTPGQS-----------------MSSVDEVISLAWNQSLAHVFASAGSS 187
Query: 188 KTVRIWDARTQKSQIIATKGENIN--------ITWAPNGNTIAVG 224
IWD + +K I + + + W P +T
Sbjct: 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVAT 232
Score = 104 bits (261), Expect = 6e-26
Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 31/198 (15%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWS-CDGRRLASGSF 71
S K++ + ++ + N N + + H S V +V ++ LASG
Sbjct: 76 SHNNKIIAGALDNGSL-ELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN 134
Query: 72 DKSVAI------FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+ + I V L W+ + + ++A IWD
Sbjct: 135 NGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194
Query: 126 ARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 185
+ +K I L+ S G + + WH N ++TA+
Sbjct: 195 LKAKKEVIHLSYTS--------------------PNSGIKQQLSVVEWHPKNSTRVATAT 234
Query: 186 G---DKTVRIWDARTQKS 200
G D ++ IWD R +
Sbjct: 235 GSDNDPSILIWDLRNANT 252
Score = 94.3 bits (235), Expect = 2e-22
Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 28/155 (18%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
+H V+ + G A+ S D S+ +++L D K + + L W +
Sbjct: 21 SHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEKPIASLQVDSKFNDLDW---S 76
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+ +++ A + ++ ++ + S+A F H+
Sbjct: 77 HNNKIIAGALDNGSLELYSTNEANNA--------INSMARF--------------SNHSS 114
Query: 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
SV + ++A ++L++ + + IWD
Sbjct: 115 SVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES 149
Score = 80.8 bits (200), Expect = 1e-17
Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 12/160 (7%)
Query: 48 QAHGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
Q H + S+ W D L S D +V ++ + + + + + +
Sbjct: 259 QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP-ESAEQLSQ--FPARGNWCFKTKFAP 315
Query: 107 TNPDLLSTASGDKTVRIWDART---QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
PDL + AS D + + + + + + + + + ++
Sbjct: 316 EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFH 375
Query: 164 HTGS--VDQLCWHAT---NPDLLSTASGDKTVRIWDARTQ 198
+ A L+ K V I + +
Sbjct: 376 LQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415
Score = 55.4 bits (134), Expect = 4e-09
Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 23/102 (22%)
Query: 115 ASGDKTVRIWD-ARTQK----------------SQIMLASGSFDKSVAIFALDKKGDLNK 157
+ V++ + +RT S + A+ S D S+ +++L D K
Sbjct: 1 GAMGSMVKLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLL-AADSEK 59
Query: 158 EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+ + L W + + +++ A + ++ ++
Sbjct: 60 PIASLQVDSKFNDLDW---SHNNKIIAGALDNGSLELYSTNE 98
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 114 bits (287), Expect = 1e-29
Identities = 39/213 (18%), Positives = 81/213 (38%), Gaps = 32/213 (15%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRR-LASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
+++ +++ + S+AW +A GS + ++ D + G G
Sbjct: 107 DSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFG-IKDKPTFIKGIGAGG 165
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI---------------------MLA 136
S+ L ++ N + +S + T R+ D + ++ M+
Sbjct: 166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVV 225
Query: 137 SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196
+G +V + L+ G + R H V + + L+TAS D+TV+IWD R
Sbjct: 226 TGDNVGNVIL--LNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
Query: 197 T--QKSQIIATKG--ENIN-ITWAPNGNTIAVG 224
K+ + + +N ++P+G +
Sbjct: 282 QVRGKASFLYSLPHRHPVNAACFSPDGARLLTT 314
Score = 104 bits (262), Expect = 4e-26
Identities = 37/185 (20%), Positives = 57/185 (30%), Gaps = 40/185 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
S+ S R + +G +V + L+ G + R H V + +
Sbjct: 208 INIWFCSLDVSASSRMVVTGDNVGNVIL--LNMDG--KELWNLRMHKKKVTHVALNPCCD 263
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
L+TAS D+TV+IWD R + + + H V+
Sbjct: 264 WFLATASVDQTVKIWDLRQVRGKASF-----------------------LYSLPHRHPVN 300
Query: 170 QLCWHATNPD--LLSTASGDKTVRIWDARTQK--------SQIIATKGENINITWAPNGN 219
C+ PD L T +R++ A I W P N
Sbjct: 301 AACFS---PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYN 357
Query: 220 TIAVG 224
I VG
Sbjct: 358 LIVVG 362
Score = 91.7 bits (228), Expect = 2e-21
Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 25/217 (11%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRR-LASGSF 71
S +++ +G V + + ++ + H KV VA + LA+ S
Sbjct: 218 SASSRMVVTGDNVGNV-ILLN-----MDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
D++V I+ L + + H V+ C+ PD L T +R++ A
Sbjct: 272 DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS---PDGARLLTTDQKSEIRVYSASQW 328
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189
+ L + + ++ + + T +T
Sbjct: 329 DCPLGLIPHPHRHFQHLTPIK---------AAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379
Query: 190 VRIWDARTQKSQIIATKGENINIT----WAPNGNTIA 222
+ ++D + K E+ I+ + P G+T+A
Sbjct: 380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLA 416
Score = 90.5 bits (225), Expect = 5e-21
Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 37/179 (20%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H K+ A ++ SF ++ + + +K L WH T+P
Sbjct: 82 HQHKL-GRASWPSVQQGLQQSFLHTLDSYRILQK--------AAPFDRRATSLAWHPTHP 132
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
++ S + +W+ + + G GS+
Sbjct: 133 STVAVGSKGGDIMLWNFGIKDKPTFI------------------------KGIGAGGSIT 168
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN----ITWAPNGNTIAVG 224
L ++ N + +S + T R+ D + ++ A+ + + + + G
Sbjct: 169 GLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTG 227
Score = 73.6 bits (181), Expect = 4e-15
Identities = 24/167 (14%), Positives = 48/167 (28%), Gaps = 42/167 (25%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALD---KKGDLNKEVVYRGHTGSVDQLCWHA 106
H V++ +S DG RL + + +++ L + + WH
Sbjct: 295 HRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354
Query: 107 TN--------PD---LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDL 155
PD T +T+ ++D + K
Sbjct: 355 RYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM------------------------ 390
Query: 156 NKEVVYRGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQ 201
+Y + + L NP + AS + IW + +++
Sbjct: 391 -MCQLYDPESSGISSLN--EFNPMGDTLASAMGYHILIWSQQEARTR 434
Score = 51.2 bits (123), Expect = 1e-07
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 12/95 (12%)
Query: 111 LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 170
++ T K R Q+ SF ++ + + +K
Sbjct: 77 IVRTLHQHKLGRASWPSVQQ----GLQQSFLHTLDSYRILQK--------AAPFDRRATS 124
Query: 171 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
L WH T+P ++ S + +W+ +
Sbjct: 125 LAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK 159
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 111 bits (280), Expect = 7e-29
Identities = 34/238 (14%), Positives = 73/238 (30%), Gaps = 51/238 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ + H V V W+ R+ + S D++ ++ G + +V + +
Sbjct: 48 ARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVR 107
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
W P+ + SG + + + + + +
Sbjct: 108 WS---PNEDKFAVGSGARVISVCYFEQENDWWVSKH----------------------LK 142
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK----------------SQII 203
R ++ L WH P+ LL+ D+ + A + + +
Sbjct: 143 RPLRSTILSLDWH---PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC 199
Query: 204 ATKGENINIT---WAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258
A + ++P+GN +A + VT P +T + + RSL
Sbjct: 200 AEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL 257
Score = 107 bits (270), Expect = 2e-27
Identities = 23/188 (12%), Positives = 51/188 (27%), Gaps = 40/188 (21%)
Query: 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
+ A++ + + V ++ D + H V + W
Sbjct: 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQD-GNGWKHARTFSDHDKIVTCVDWA- 64
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P + T S D+ +++ R G + +V
Sbjct: 65 --PKSNRIVTCSQDRNAYVYEKRPD-----------------------GTWKQTLVLLRL 99
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT---KGENINIT---WAP 216
+ + W P+ + SG + + + + ++ + I W P
Sbjct: 100 NRAATFVRWS---PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP 156
Query: 217 NGNTIAVG 224
N +A G
Sbjct: 157 NNVLLAAG 164
Score = 102 bits (255), Expect = 2e-25
Identities = 30/188 (15%), Positives = 61/188 (32%), Gaps = 26/188 (13%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK-EVVYRGHTGSVDQLCWHA 106
V WS + + A GS + +++ +++ D + + R ++ L WH
Sbjct: 97 LRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH- 155
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P+ LL+ D+ + A + + + + N
Sbjct: 156 --PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGS---------RLPFNTVCAEYPS 204
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN------ITWAP 216
G V + + +P L+ A D +V I + A ++ + WA
Sbjct: 205 GGWVHAVGF---SPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWAN 261
Query: 217 NGNTIAVG 224
+A G
Sbjct: 262 ESAIVAAG 269
Score = 64.0 bits (156), Expect = 5e-12
Identities = 24/185 (12%), Positives = 48/185 (25%), Gaps = 25/185 (13%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
SP L V I + + + S+ W+ + +A+G +
Sbjct: 214 SPSGNALAYAGHDSSV-TIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGY-N 271
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132
S + ++ G R + + + V R +
Sbjct: 272 YSPILLQGNESG----WAHTRDLDAGTSKT-SFTHTGNTGEGREEEGPVSFTALR-STFR 325
Query: 133 IMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD---LLSTASGDKT 189
M GS ++ H + L +A P +++ D
Sbjct: 326 NMDLKGSSQSISSLPT--------------VHQNMIATLRPYAGTPGNITAFTSSGTDGR 371
Query: 190 VRIWD 194
V +W
Sbjct: 372 VVLWT 376
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 109 bits (275), Expect = 1e-28
Identities = 50/269 (18%), Positives = 85/269 (31%), Gaps = 71/269 (26%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSC--DGRRL 66
K + + S D +K F + I H V V W+ G L
Sbjct: 18 DYYGKRMATCSS-------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL 70
Query: 67 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD----LLSTASGDKTVR 122
AS S+D V I+ + G ++ V+ H+ SV+ + W P +L AS D V
Sbjct: 71 ASCSYDGKVMIWKE-ENGRWSQIAVHAVHSASVNSVQWA---PHEYGPMLLVASSDGKVS 126
Query: 123 IWDARTQKSQI----------------------------------MLASGSFDKSVAIFA 148
+ + + + +G D V I+
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 149 LDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLS-----TASGDKTVRIWDARTQKSQI 202
+ GH+ V + W P +L + S D+T IW ++
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYMASVSQDRTCIIWTQDNEQGPW 243
Query: 203 IATKGENIN-------ITWAPNGNTIAVG 224
T + +W+ +GN +A+
Sbjct: 244 KKTLLKEEKFPDVLWRASWSLSGNVLALS 272
Score = 105 bits (265), Expect = 3e-27
Identities = 47/228 (20%), Positives = 77/228 (33%), Gaps = 54/228 (23%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHA 106
AH +H G+R+A+ S DK++ IF + +G+ +K + GH G V ++ W A
Sbjct: 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIF--EVEGETHKLIDTLTGHEGPVWRVDW-A 62
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+L++ S D V IW G ++ V+ H
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEEN------------------------GRWSQIAVHAVH 98
Query: 165 TGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIIAT-KGENINIT---WAP 216
+ SV+ + W P +L AS D V + + + + I + WAP
Sbjct: 99 SASVNSVQWA---PHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
Query: 217 -------------NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
G ++LV T GH
Sbjct: 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Score = 100 bits (252), Expect = 2e-25
Identities = 34/209 (16%), Positives = 63/209 (30%), Gaps = 48/209 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
I + H + V+SV W+ G L S D V++ + G + ++ H V+
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNS 150
Query: 102 LCWH------------ATNPDLLSTASGDKTVRIWDARTQKSQI---------------- 133
W T D V+IW +
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 134 ----------MLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD-- 179
+AS S D++ I+ D + K+ + + + W +
Sbjct: 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGN 267
Query: 180 LLSTASGDKTVRIWDARTQKSQIIATKGE 208
+L+ + GD V +W + A +
Sbjct: 268 VLALSGGDNKVTLWKENLEGKWEPAGEVH 296
Score = 78.8 bits (195), Expect = 3e-17
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 11/129 (8%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD---GRRLASGSFDK 73
+ +G +LV KI Y T+ + H V VAWS +AS S D+
Sbjct: 171 RKFVTGGADNLV-KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR 229
Query: 74 SVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
+ I+ D + K+ + + + W + +L+ + GD V +W +
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGNVLALSGGDNKVTLWKENLE 286
Query: 130 KSQIMLASG 138
Sbjct: 287 GKWEPAGEV 295
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 109 bits (276), Expect = 1e-28
Identities = 49/174 (28%), Positives = 74/174 (42%), Gaps = 36/174 (20%)
Query: 40 THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV----VYRGH 95
T D+ + AH + SVAW LA+GSFD +V+I+A ++ D E+ + GH
Sbjct: 47 TLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH 106
Query: 96 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG 153
V + W + D L+T S DK+V IW+ + S
Sbjct: 107 ENEVKGVAW---SNDGYYLATCSRDKSVWIWETDESGEEYECIS---------------- 147
Query: 154 DLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT 205
V + H+ V + WH P LL+++S D TVRIW + +A
Sbjct: 148 ------VLQEHSQDVKHVIWH---PSEALLASSSYDDTVRIWKDYDDDWECVAV 192
Score = 98.8 bits (247), Expect = 2e-24
Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 36/188 (19%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
Q H V V W LAS S+D +V I+ D V GH G+V +
Sbjct: 150 QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYD-DDWECVAVLNGHEGTVWSSDF--- 205
Query: 108 NPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ L + S D TVR+W D++ + + ++
Sbjct: 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDE-----------------DDQQEWVCEAILPDV 248
Query: 164 HTGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIATKGENINITW-------A 215
H V + W + L+++ D + +++ + ++ A + +
Sbjct: 249 HKRQVYNVAWG---FNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLE 305
Query: 216 PNGNTIAV 223
NG TI
Sbjct: 306 LNGKTILA 313
Score = 98.4 bits (246), Expect = 2e-24
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 38/194 (19%)
Query: 40 THNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGS 98
+ N IK + + K+ S +S LA+GS D+ + + ++ +V H +
Sbjct: 3 SINLIKSLKLYKEKIWSFDFS--QGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA 60
Query: 99 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
+ + W P LL+ S D TV IW + +AI
Sbjct: 61 IRSVAWR---PHTSLLAAGSFDSTVSIWAKEESADR-----TFEMDLLAII--------- 103
Query: 157 KEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART--QKSQIIAT-KG--EN 209
GH V + W + D L+T S DK+V IW+ ++ + I+ + ++
Sbjct: 104 -----EGHENEVKGVAW---SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQD 155
Query: 210 IN-ITWAPNGNTIA 222
+ + W P+ +A
Sbjct: 156 VKHVIWHPSEALLA 169
Score = 92.3 bits (230), Expect = 4e-22
Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 39/160 (24%)
Query: 50 HGSKVHSVAWSCDGR--RLASGSFDKSVAIFALDKKGDLNKE------VVYRGHTGSVDQ 101
H V S + RL SGS D +V ++ + +++ ++ H V
Sbjct: 196 HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYN 255
Query: 102 LCWHATNPD-LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV 160
+ W + L+++ D + +++ + ++
Sbjct: 256 VAWG---FNGLIASVGADGVLAVYEEVDGEWKVFAKRA---------------------- 290
Query: 161 YRGHTGSVDQLCWHATNPD---LLSTASGDKTVRIWDART 197
++ + W + +L+T D V W
Sbjct: 291 LCHGVYEINVVKWL--ELNGKTILATGGDDGIVNFWSLEK 328
Score = 69.9 bits (172), Expect = 4e-14
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
H +V++VAW +G +AS D +A++ +D + + + ++ + W
Sbjct: 247 DVHKRQVYNVAWGFNGL-IASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWL- 304
Query: 107 TNPD---LLSTASGDKTVRIWDART 128
+ +L+T D V W
Sbjct: 305 -ELNGKTILATGGDDGIVNFWSLEK 328
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 108 bits (273), Expect = 5e-28
Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 39/182 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
S+ +AW+ G LAS D+ + I+ + + K V+ GH +V ++ W +P
Sbjct: 15 PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAW---SP 71
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
L++AS D T IW + + GH
Sbjct: 72 CGNYLASASFDATTCIWKKNQDDFECV------------------------TTLEGHENE 107
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDART-QKSQIIAT-KG--ENIN-ITWAPNGNT 220
V + W P LL+T S DK+V +W+ + + ++ +++ + W P+
Sbjct: 108 VKSVAW---APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164
Query: 221 IA 222
+A
Sbjct: 165 LA 166
Score = 99 bits (250), Expect = 8e-25
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+H V V W LAS S+D +V ++ + + D GH +V L +
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE-EDDWVCCATLEGHESTVWSLAF--- 202
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+P L++ S D+TVRIW ++ +A D S + H+
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCIC----------TLSGFHS 252
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQ 201
++ + W L+TA GD +R++
Sbjct: 253 RTIYDIAWC---QLTGALATACGDDAIRVFQEDPNSDP 287
Score = 98.8 bits (247), Expect = 2e-24
Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 35/163 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY-------------RGHT 96
H S V S+A+ G+RLAS S D++V I+ G+ H+
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGD 154
++ + W L+TA GD +R++
Sbjct: 253 RTIYDIAWC---QLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH------------ 297
Query: 155 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
+++ H+ V+ + W+ P LL++ S D V W +
Sbjct: 298 -----LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR 335
Score = 46.8 bits (112), Expect = 3e-06
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 11/71 (15%)
Query: 162 RGHTGS-VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGE----NIN-IT 213
H S L W+ P LL++ GD+ +RIW + E + +
Sbjct: 12 PAHPDSRCWFLAWN---PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVA 68
Query: 214 WAPNGNTIAVG 224
W+P GN +A
Sbjct: 69 WSPCGNYLASA 79
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 111 bits (279), Expect = 7e-28
Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 52/215 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V+ +S DG+R+AS DK++ +F + L + H V +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFS---S 667
Query: 110 D--LLSTASGDKTVRIWDARTQK---------------------SQIMLASGSFDKSVAI 146
D ++T S DK V+IWD+ T K + ++LA+GS D + +
Sbjct: 668 DDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL 727
Query: 147 FALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIA 204
+ L++K N GHT SV+ + PD LL++ S D T+R+WD R+ +
Sbjct: 728 WDLNQKECRN---TMFGHTNSVNHCRFS---PDDELLASCSADGTLRLWDVRSANERKSI 781
Query: 205 TKGENIN---------------ITWAPNGNTIAVG 224
+W+ +G+ I V
Sbjct: 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA 816
Score = 106 bits (266), Expect = 4e-26
Identities = 32/192 (16%), Positives = 63/192 (32%), Gaps = 39/192 (20%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
+ + V +WS DG ++ + +K V +F + G L + ++ GH
Sbjct: 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAE--IHTGHH 840
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGD 154
++ + P L A V +W+ ++
Sbjct: 841 STIQYCDFS---PYDHLAVIALSQYCVELWNIDSRLKVADC------------------- 878
Query: 155 LNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINI 212
RGH V + + PD TAS D+T+R+W+ + + I++
Sbjct: 879 -------RGHLSWVHGVMFS---PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928
Query: 213 TWAPNGNTIAVG 224
+ N +
Sbjct: 929 VFQENETMVLAV 940
Score = 102 bits (256), Expect = 7e-25
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 30/185 (16%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+++ H V S A S D + +S S DK+ I++ D E+ +GH G V
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD-LLSPLHEL--KGHNGCVRCSA 1134
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ D LL+T + +RIW+ + A S ++
Sbjct: 1135 FS---LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEG-----------------T 1174
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENIN-ITWAPNGN 219
H G V +C+ PD + S ++ W+ T S Q T G N+ I +P+
Sbjct: 1175 ATHGGWVTDVCFS---PDSKTLVSAGGYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFR 1231
Query: 220 TIAVG 224
T
Sbjct: 1232 TYVTV 1236
Score = 96.1 bits (239), Expect = 1e-22
Identities = 46/228 (20%), Positives = 73/228 (32%), Gaps = 59/228 (25%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHN-DIKEYQAHGSKVHSVAWSCDGRRLASGSF 71
+ + K L S S+ D ++ +N D QAH V D RL S SF
Sbjct: 1012 TADGKTLISSSE-------DSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSF 1063
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
D +V ++ + G + E + H G+V D S+ S DKT +IW
Sbjct: 1064 DGTVKVWNV-ITGRI--ERDFTCHQGTVLSCAIS---SDATKFSSTSADKTAKIWSFDLL 1117
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGD 187
L +GH G V + D LL+T +
Sbjct: 1118 SPLHEL--------------------------KGHNGCVRCSAFS---LDGILLATGDDN 1148
Query: 188 KTVRIWDARTQKSQIIATKGENIN-----------ITWAPNGNTIAVG 224
+RIW+ + + ++P+ T+
Sbjct: 1149 GEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196
Score = 94.1 bits (234), Expect = 6e-22
Identities = 33/192 (17%), Positives = 57/192 (29%), Gaps = 49/192 (25%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
S + S S D K F+ + + E + H V A+S DG LA+G
Sbjct: 1094 SSDATKFSSTSA-------DKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGD 1146
Query: 71 FDKSVAIF------ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 124
+ + I+ L ++ E H G V +C+ PD + S ++ W
Sbjct: 1147 DNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS---PDSKTLVSAGGYLKWW 1203
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLS 182
+ T S + ++ ++ PD
Sbjct: 1204 NVATGDSSQTF--------------------------YTNGTNLKKIHVS---PDFRTYV 1234
Query: 183 TASGDKTVRIWD 194
T + I
Sbjct: 1235 TVDNLGILYILQ 1246
Score = 93.7 bits (233), Expect = 8e-22
Identities = 26/221 (11%), Positives = 62/221 (28%), Gaps = 57/221 (25%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP L V+ +N + + + + H S VH V +S DG + S
Sbjct: 849 SPYDHLAVIALS-------QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTAS 901
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
D+++ ++ K + + + ++ + +++ +T
Sbjct: 902 DDQTIRVWETKK-----VCKNSAIVLKQEIDVVFQ---ENETMVLAVDNIRGLQLIAGKT 953
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
+ + V C P ++
Sbjct: 954 GQ-----------------------------IDYLPEAQVSCCCLS---PHLEYVAFGDE 981
Query: 187 DKTVRIWDARTQKSQIIATKGEN--IN-ITWAPNGNTIAVG 224
D ++I + + + G + I + +G T+
Sbjct: 982 DGAIKIIELPNNR-VFSSGVGHKKAVRHIQFTADGKTLISS 1021
Score = 91.8 bits (228), Expect = 3e-21
Identities = 45/220 (20%), Positives = 81/220 (36%), Gaps = 35/220 (15%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRR--LASGS 70
S + + + S V KI D T + Y H +V+ ++ LA+GS
Sbjct: 666 SSDDSYIATCSADKKV-KIWDS----ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
D + ++ L++K N GHT SV+ + PD LL++ S D T+R+WD R+
Sbjct: 721 NDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFS---PDDELLASCSADGTLRLWDVRS 774
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
+ + K+ L+ E V W D + A+
Sbjct: 775 ANERKSINV-------------KRFFLSSEDPPEDVEVIVKCCSWS---ADGDKIIVAAK 818
Query: 187 DKTVRIWDARTQK-SQIIATKGENIN-ITWAPNGNTIAVG 224
+K + + ++I I ++P + +
Sbjct: 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIA 858
Score = 89.1 bits (221), Expect = 3e-20
Identities = 32/226 (14%), Positives = 67/226 (29%), Gaps = 55/226 (24%)
Query: 20 PSGSQFHLV-CKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVA 76
+ L D ++K N H + V+ +S D LAS S D ++
Sbjct: 709 NKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLR 768
Query: 77 IFALD----------KKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 124
++ + K+ L+ E V W D + A+ +K +
Sbjct: 769 LWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWS---ADGDKIIVAAKNKVLLFD 825
Query: 125 DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLS 182
+ + GH ++ + P L
Sbjct: 826 IHTSGLLAEIH--------------------------TGHHSTIQYCDFS---PYDHLAV 856
Query: 183 TASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
A V +W+ + +A +G ++ + ++P+G++
Sbjct: 857 IALSQYCVELWNIDS--RLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Score = 69.9 bits (171), Expect = 1e-13
Identities = 29/154 (18%), Positives = 55/154 (35%), Gaps = 45/154 (29%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+K+ + GR K++ + +V R HT +V C+ +
Sbjct: 578 RQAKLQAKQEGDTGRLYLEWINKKTIKNLSR---------LVVRPHTDAVYHACF---SQ 625
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D +++ DKT++++ A T + + + + H
Sbjct: 626 DGQRIASCGADKTLQVFKAETGEKLLDI--------------------------KAHEDE 659
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
V + D ++T S DK V+IWD+ T K
Sbjct: 660 VLCCAFS---SDDSYIATCSADKKVKIWDSATGK 690
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 107 bits (270), Expect = 1e-27
Identities = 38/200 (19%), Positives = 64/200 (32%), Gaps = 40/200 (20%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+++A S D + S D ++A++ L L + ++GHT +
Sbjct: 140 SAPACYALAISPDSKVCFSCCSDGNIAVWDL-HNQTLVR--QFQGHTDGASCIDIS---N 193
Query: 110 D--LLSTASGDKTVRIWDARTQK--------SQI----------MLASGSFDKSVAIFAL 149
D L T D TVR WD R + SQI LA G +V + +
Sbjct: 194 DGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV 253
Query: 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKG 207
+K + H V L + + D + W I
Sbjct: 254 NKP----DKYQLHLHESCVLSLKFA---YCGKWFVSTGKDNLLNAWRTPYG--ASIFQSK 304
Query: 208 EN---INITWAPNGNTIAVG 224
E+ ++ + + I G
Sbjct: 305 ESSSVLSCDISVDDKYIVTG 324
Score = 96.8 bits (242), Expect = 1e-23
Identities = 34/182 (18%), Positives = 52/182 (28%), Gaps = 42/182 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+ + S DG L G +++I+ L K + L P
Sbjct: 96 RDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA-ELTSSAPACYALAIS---P 151
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D + + D + +WD Q +GHT
Sbjct: 152 DSKVCFSCCSDGNIAVWDLHNQTLVRQF--------------------------QGHTDG 185
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKG--ENIN-ITWAPNGNTIA 222
+ D L T D TVR WD R + + I + + P G +A
Sbjct: 186 ASCIDIS---NDGTKLWTGGLDNTVRSWDLRE--GRQLQQHDFTSQIFSLGYCPTGEWLA 240
Query: 223 VG 224
VG
Sbjct: 241 VG 242
Score = 87.2 bits (217), Expect = 3e-20
Identities = 27/185 (14%), Positives = 51/185 (27%), Gaps = 43/185 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALD--KKGDLNKEVVYRGHTGSVDQLCWHAT 107
HG V +V S R + +G V ++ + ++ +
Sbjct: 50 HGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL--- 105
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
PD L T+ IWD +I
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIK------------------------AELTSSA 141
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGN 219
+ L PD + + D + +WD Q ++ +G + + I + +G
Sbjct: 142 PACYALAIS---PDSKVCFSCCSDGNIAVWDLHNQ--TLVRQFQGHTDGASCIDISNDGT 196
Query: 220 TIAVG 224
+ G
Sbjct: 197 KLWTG 201
Score = 82.2 bits (204), Expect = 2e-18
Identities = 20/182 (10%), Positives = 41/182 (22%), Gaps = 41/182 (22%)
Query: 50 HGSKVHSVAWSCDGRRLA-SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
+S + DG+ D + +++ H V + +
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA----RQINTLNHGEVVCAVTI---S 60
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+ T V++WD ++ ++
Sbjct: 61 NPTRHVYTGGKG-CVKVWDISHPGNKSPVSQLDC---------------------LNRDN 98
Query: 167 SVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KGENINIT---WAPNGNT 220
+ PD L T+ IWD +I A +P+
Sbjct: 99 YIRSCKL---LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155
Query: 221 IA 222
Sbjct: 156 CF 157
Score = 35.9 bits (84), Expect = 0.008
Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 1/63 (1%)
Query: 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNTI 221
+ A D + R + GE + +T + +
Sbjct: 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHV 66
Query: 222 AVG 224
G
Sbjct: 67 YTG 69
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 107 bits (270), Expect = 2e-27
Identities = 48/239 (20%), Positives = 78/239 (32%), Gaps = 60/239 (25%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
TH I H V V W+ G LAS S+D V I+ + G ++ V+ H+
Sbjct: 43 ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE-ENGRWSQIAVHAVHS 101
Query: 97 GSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQI------------------- 133
SV+ + W P LL AS D V + + + +
Sbjct: 102 ASVNSVQWA---PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158
Query: 134 ---------------MLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATN 177
+G D V I+ + GH+ V + W
Sbjct: 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS--- 215
Query: 178 PDLLS-----TASGDKTVRIWDARTQKSQIIATKGENIN-------ITWAPNGNTIAVG 224
P +L + S D+T IW ++ T + +W+ +GN +A+
Sbjct: 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 274
Score = 103 bits (258), Expect = 9e-26
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 39/179 (21%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCW-H 105
AH +H G+RLA+ S DK++ IF + +G+ +K + GH G V ++ W H
Sbjct: 8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIF--EVEGETHKLIDTLTGHEGPVWRVDWAH 65
Query: 106 ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+L++ S D V IW G ++ V+ H+
Sbjct: 66 PKFGTILASCSYDGKVLIWKEEN------------------------GRWSQIAVHAVHS 101
Query: 166 GSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIIAT-KGENINIT---WAP 216
SV+ + W P LL AS D V + + + + I + WAP
Sbjct: 102 ASVNSVQWA---PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 157
Score = 101 bits (254), Expect = 4e-25
Identities = 37/226 (16%), Positives = 66/226 (29%), Gaps = 48/226 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
I + H + V+SV W+ G L S D V++ + G + ++ H V+
Sbjct: 94 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNS 152
Query: 102 LCWH------------ATNPDLLSTASGDKTVRIWDARTQKSQI---------------- 133
W T D V+IW +
Sbjct: 153 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 212
Query: 134 ----------MLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD-- 179
LAS S D++ I+ D + K+ + + + W +
Sbjct: 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGN 269
Query: 180 LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGN 225
+L+ + GD V +W + A + G T +
Sbjct: 270 VLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFD 315
Score = 86.2 bits (214), Expect = 1e-19
Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 49/192 (25%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD---GRRLASGSFDK 73
+ +G +LV KI Y T+ + H V VAWS LAS S D+
Sbjct: 173 RKFVTGGADNLV-KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 231
Query: 74 SVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
+ I+ D + K+ + + + W + +L+ + GD V +W +
Sbjct: 232 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGNVLALSGGDNKVTLWKENLE 288
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189
E H G + G T
Sbjct: 289 GKW-------------------------EPAGEVHQGGG-------------GSGGGGAT 310
Query: 190 VRIWDARTQKSQ 201
+ +D Q
Sbjct: 311 SKEFDGPCQNEI 322
Score = 63.9 bits (156), Expect = 5e-12
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ + + + +WS G LA D V ++ + +G E H G
Sbjct: 249 LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW--EPAGEVHQGGG---- 302
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFD-KSVAIFALDKK 152
+ G T + +D Q +L S D A + ++
Sbjct: 303 ---------GSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKER 343
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 109 bits (273), Expect = 4e-27
Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 47/219 (21%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDY-VKHFN--THNDIKEYQAHGSKVHSVAWSCDGRRLASG 69
+ GS DD+ ++ FN T + +++AH + S+A + SG
Sbjct: 64 IARKNWIIVGS--------DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129
S D +V ++ + L + + GH V + ++ +P ++ D+TV++W
Sbjct: 116 SDDLTVKLWNWENNWALEQ--TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGD 187
L G V+ + ++ PD + TAS D
Sbjct: 174 TPNFTL-------------------------TTGQERGVNYVDYY-PLPDKPYMITASDD 207
Query: 188 KTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
T++IWD +T +AT +G N++ + P I
Sbjct: 208 LTIKIWDYQT--KSCVATLEGHMSNVSFAVFHPTLPIII 244
Score = 88.6 bits (220), Expect = 3e-20
Identities = 20/153 (13%), Positives = 46/153 (30%), Gaps = 31/153 (20%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+V + + + + + V I+ + + + V + A
Sbjct: 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE-TQVEVR--SIQVTETPVRAGKFIAR 66
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
++ S D +R+++ T + + H
Sbjct: 67 KNWIIV-GSDDFRIRVFNYNTGEK--------------VVDF------------EAHPDY 99
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+ + H T P +LS S D TV++W+ +
Sbjct: 100 IRSIAVHPTKPYVLS-GSDDLTVKLWNWENNWA 131
Score = 81.7 bits (202), Expect = 1e-17
Identities = 33/243 (13%), Positives = 69/243 (28%), Gaps = 32/243 (13%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
P+ + + S + KI DY T + + + H S V + + SGS D
Sbjct: 195 LPDKPYMITASDDLTI-KIWDY----QTKSCVATLEGHMSNVSFAVFHPTLPIIISGSED 249
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ--- 129
++ I+ + E + H T + D +
Sbjct: 250 GTLKIWNS-STYKV--EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPT 306
Query: 130 ------------KSQIMLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHA 175
+ AS F + ++ + L
Sbjct: 307 LSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAH-- 364
Query: 176 TNPDLLSTASG-DKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
+P+ D I+ A +++ G+ + W P+ N+ A+ ++ + +
Sbjct: 365 -SPNGRFVTVVGDGEYVIYTALAWRNK---AFGKCQDFVWGPDSNSYALIDETGQIKYYK 420
Query: 235 VVK 237
K
Sbjct: 421 NFK 423
Score = 57.0 bits (138), Expect = 2e-09
Identities = 23/256 (8%), Positives = 56/256 (21%), Gaps = 54/256 (21%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
SP + + D + + + K W D A
Sbjct: 365 SPNGRFVTVVG--------DG---EYVIYTALAWRNKAFGKCQDFVWGPDSNSYALIDET 413
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 132
+ + + + + S + L D V +D
Sbjct: 414 GQIKYY-----KNFKEVTSWSVPMHSAID--RLFSGALLGV--KSDGFVYFFDWDNGTLV 464
Query: 133 ----------------IMLASGSFDKSVAI-FALDKKGDLNKEVVYRGHTGSVDQLCWHA 175
++ + + + + + + + D
Sbjct: 465 RRIDVNAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDE 524
Query: 176 TNPDLLSTASGDKTVRIWD---------------ARTQKSQIIATKGENINITW-APNGN 219
D+L S T W K+ +A + + + N
Sbjct: 525 AF-DVLYELSESITSGKWVGDVFIFTTATNRLNYFVGGKTYNLAHYTKEMYLLGYLARDN 583
Query: 220 TIAVGNKEDLVTFIDV 235
+ + ++E V ++
Sbjct: 584 KVYLADREVHVYGYEI 599
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 106 bits (267), Expect = 4e-27
Identities = 36/182 (19%), Positives = 75/182 (41%), Gaps = 21/182 (11%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATN 108
V W+ + ++ A GS + ++I +++ D + + +V L WH
Sbjct: 95 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH--- 151
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
P+ LL+ S D RI+ A ++ + A + + G+L E G
Sbjct: 152 PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM------PFGELMFE--SSSSCG 203
Query: 167 SVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS-QIIATKGENIN-ITWAPNGNTIA 222
V +C+ + + ++ S D TV + DA + + +A++ + +T+ + +A
Sbjct: 204 WVHGVCF---SANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA 260
Query: 223 VG 224
G
Sbjct: 261 AG 262
Score = 100 bits (250), Expect = 1e-24
Identities = 30/177 (16%), Positives = 57/177 (32%), Gaps = 35/177 (19%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H +V V W+ D R+ + D++ ++ L K +V + + W P
Sbjct: 51 HNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL-KGRTWKPTLVILRINRAARCVRWA---P 106
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ + SG + + I + + I + +
Sbjct: 107 NEKKFAVGSGSRVISICYFEQENDWWV--------CKHIK--------------KPIRST 144
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIA 222
V L WH P+ LL+ S D RI+ A + ++ + P G +
Sbjct: 145 VLSLDWH---PNSVLLAAGSCDFKCRIFSAYIK--EVEERPAPTPWGSKMPFGELMF 196
Score = 97.3 bits (243), Expect = 1e-23
Identities = 26/188 (13%), Positives = 52/188 (27%), Gaps = 41/188 (21%)
Query: 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
+ + AW+ D ++A + V I+ + + H G V + W
Sbjct: 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWA- 61
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
PD + T D+ +W + +V
Sbjct: 62 --PDSNRIVTCGTDRNAYVWTLKG------------------------RTWKPTLVILRI 95
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATK-----GENIN-ITWAP 216
+ + W P+ + SG + + I + + + + W P
Sbjct: 96 NRAARCVRWA---PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152
Query: 217 NGNTIAVG 224
N +A G
Sbjct: 153 NSVLLAAG 160
Score = 96.2 bits (240), Expect = 3e-23
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 25/178 (14%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ E + VH V +S +G R+A S D +V + DKK + T + +
Sbjct: 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT---LASETLPLLAVT 251
Query: 104 WHATNPD--LLSTASGDKTVRI-WDARTQK--------SQIMLASGSFDKSVAIFALDKK 152
+ + L++ V +D+ K + LDKK
Sbjct: 252 F---ITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308
Query: 153 GDLNKEV-----VYRGHTGSVDQLCWHA---TNPDLLSTASGDKTVRIWDARTQKSQI 202
+ H SV Q+ + T D + IWD R+ +S +
Sbjct: 309 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESAL 366
Score = 84.6 bits (210), Expect = 4e-19
Identities = 30/186 (16%), Positives = 51/186 (27%), Gaps = 43/186 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV---------------VYRG 94
S V S+ W + LA+GS D IF+ K +
Sbjct: 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS 200
Query: 95 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQI------------------- 133
G V +C+ + + ++ S D TV + DA + +
Sbjct: 201 SCGWVHGVCF---SANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESS 257
Query: 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++A+G D +F D ++ + G Q K
Sbjct: 258 LVAAGH-DCFPVLFTYDSAA---GKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEG 313
Query: 194 DARTQK 199
A
Sbjct: 314 SAAAGA 319
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 106 bits (266), Expect = 5e-27
Identities = 43/229 (18%), Positives = 77/229 (33%), Gaps = 52/229 (22%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATN 108
H VH V + GR +A+ S D+ + +F LDK + +R H S+ + W
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDW---A 66
Query: 109 PD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
++++AS DKTV++W+ + + SG +
Sbjct: 67 SPEYGRIIASASYDKTVKLWEEDPDQEE---CSGRRWNKLCTL--------------NDS 109
Query: 165 TGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIIATKGENIN--------- 211
GS+ + + P L+ D +R++DA T +
Sbjct: 110 KGSLYSVKFA---PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166
Query: 212 ------ITWAPN---GNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
++W P+ +AV E + + L GH
Sbjct: 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL--PGH 213
Score = 101 bits (253), Expect = 4e-25
Identities = 40/199 (20%), Positives = 72/199 (36%), Gaps = 38/199 (19%)
Query: 48 QAHGSKVHSVAWSCD--GRRLASGSFDKSVAI------FALDKKGDLNKEVVYRGHTGSV 99
+AH S + ++ W+ GR +AS S+DK+V + NK GS+
Sbjct: 54 RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSL 113
Query: 100 DQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDL 155
+ + P L+ D +R++DA + + L + +
Sbjct: 114 YSVKFA---PAHLGLKLACLGNDGILRLYDALE------------PSDLRSWTLTSEMKV 158
Query: 156 NKEVVYRGHTGSVDQLCWH--ATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KG--ENI 210
H S L W +P+ L+ ++ ++ + + K + A G I
Sbjct: 159 LSIPP-ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLI 217
Query: 211 N-ITWAPN----GNTIAVG 224
I+WAP+ IA G
Sbjct: 218 RSISWAPSIGRWYQLIATG 236
Score = 94.7 bits (236), Expect = 8e-23
Identities = 35/184 (19%), Positives = 61/184 (33%), Gaps = 38/184 (20%)
Query: 48 QAHGSKVHSVAWS---CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
H ++W +LA + ++++ K G L+ GH + + W
Sbjct: 164 ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRG-KDGKLHVAAKLPGHKSLIRSISW 222
Query: 105 HATNPD------LLSTASGDKTVRIWDARTQKSQI-------------------MLASGS 139
P L++T D +RI+ + S + M A G
Sbjct: 223 A---PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGR 279
Query: 140 FDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDAR 196
D + A + + + + H G V + W N +LS+A D VR+W A
Sbjct: 280 SDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW---NLTGTILSSAGDDGKVRLWKAT 336
Query: 197 TQKS 200
Sbjct: 337 YSNE 340
Score = 91.2 bits (227), Expect = 1e-21
Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 51/231 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSV-----------AIFALDKKGDLNKEV 90
+ ++SV ++ G +LA D + + L + +
Sbjct: 103 LCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162
Query: 91 VYRGHTGSVDQLCWH--ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
H S L W +P+ L+ ++ ++ + + K +
Sbjct: 163 P-ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV--------------- 206
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPD------LLSTASGDKTVRIWDARTQKSQI 202
GH + + W P L++T D +RI+ + S +
Sbjct: 207 ---------AAKLPGHKSLIRSISWA---PSIGRWYQLIATGCKDGRIRIFKITEKLSPL 254
Query: 203 IATKGENINITWA--PNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
+ + + + + + A G + ++S E H
Sbjct: 255 ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305
Score = 66.9 bits (164), Expect = 6e-13
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 16 YKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAW--SCDGRRLASGSFDK 73
Y+L+ +G + D ++ F + + S +S + S D A G D
Sbjct: 230 YQLIATGCK-------DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDS 282
Query: 74 SVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 130
+ A + + + + H G V + W N +LS+A D VR+W A
Sbjct: 283 NTEEKAELQSNLQVELLSEHDDHNGEVWSVSW---NLTGTILSSAGDDGKVRLWKATYSN 339
Query: 131 S 131
Sbjct: 340 E 340
Score = 50.4 bits (121), Expect = 2e-07
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
S + + G + + ++ + E+ H +V SV+W+ G L+S D
Sbjct: 269 SADVDMDAQGRSDSNTEEKAE-LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDD 327
Query: 73 KSV 75
V
Sbjct: 328 GKV 330
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 108 bits (271), Expect = 6e-27
Identities = 52/269 (19%), Positives = 85/269 (31%), Gaps = 71/269 (26%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSC--DGRRL 66
K L + S D +K F + I H V V W+ G L
Sbjct: 18 DYYGKRLATCSS-------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTIL 70
Query: 67 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD----LLSTASGDKTVR 122
AS S+D V I+ + G ++ V+ H+ SV+ + W P LL AS D V
Sbjct: 71 ASCSYDGKVLIWKEE-NGRWSQIAVHAVHSASVNSVQWA---PHEYGPLLLVASSDGKVS 126
Query: 123 IWDARTQKSQI----------------------------------MLASGSFDKSVAIFA 148
+ + + + +G D V I+
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWK 186
Query: 149 LDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLS-----TASGDKTVRIWDARTQKSQI 202
+ GH+ V + W P +L + S D+T IW ++
Sbjct: 187 YNSDAQTYVLESTLEGHSDWVRDVAWS---PTVLLRSYLASVSQDRTCIIWTQDNEQGPW 243
Query: 203 IATKGENIN-------ITWAPNGNTIAVG 224
T + +W+ +GN +A+
Sbjct: 244 KKTLLKEEKFPDVLWRASWSLSGNVLALS 272
Score = 105 bits (262), Expect = 1e-25
Identities = 49/228 (21%), Positives = 77/228 (33%), Gaps = 54/228 (23%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHA 106
AH +H G+RLA+ S DK++ IF + +G+ +K + GH G V ++ W A
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIF--EVEGETHKLIDTLTGHEGPVWRVDW-A 62
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+L++ S D V IW G ++ V+ H
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEEN------------------------GRWSQIAVHAVH 98
Query: 165 TGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIIAT-KGENINIT---WAP 216
+ SV+ + W P LL AS D V + + + + I + WAP
Sbjct: 99 SASVNSVQWA---PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP 155
Query: 217 -------------NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
G ++LV T GH
Sbjct: 156 ATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Score = 96.9 bits (241), Expect = 5e-23
Identities = 34/199 (17%), Positives = 62/199 (31%), Gaps = 48/199 (24%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
I + H + V+SV W+ G L S D V++ + G + ++ H V+
Sbjct: 92 IAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII-DAHAIGVNS 150
Query: 102 LCWH----------ATNPD--LLSTASGDKTVRIWDARTQKSQ----------------- 132
W + T D V+IW +
Sbjct: 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV 210
Query: 133 ---------IMLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD-- 179
LAS S D++ I+ D + K+ + + + W +
Sbjct: 211 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGN 267
Query: 180 LLSTASGDKTVRIWDARTQ 198
+L+ + GD V +W +
Sbjct: 268 VLALSGGDNKVTLWKENLE 286
Score = 77.3 bits (190), Expect = 3e-16
Identities = 41/248 (16%), Positives = 72/248 (29%), Gaps = 33/248 (13%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD---GRRLASGSFDK 73
+ +G +LV KI Y T+ + H V VAWS LAS S D+
Sbjct: 171 RKFVTGGADNLV-KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR 229
Query: 74 SVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
+ I+ D + K+ + + + W + +L+ + GD V +W +
Sbjct: 230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW---SLSGNVLALSGGDNKVTLWKENLE 286
Query: 130 KSQIM--------LASGSFDKSVAIFALDK-------KGDLNKEVV-------YRGHTGS 167
SG + F + N E+ R T S
Sbjct: 287 GKWEPAGEVHQGGGGSGGGGATSKEFDGPCQNEIDLLFSECNDEIDNAKLIMKERRFTAS 346
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKE 227
+ + L G V I T+ + ++ N
Sbjct: 347 YTFAKFSTGSMLLTKDIVGKSGVSIKRLPTELQRKFLFDDVYLDKEIEKVTIEARKSNPY 406
Query: 228 DLVTFIDV 235
++ +
Sbjct: 407 PQISESSL 414
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 104 bits (262), Expect = 2e-26
Identities = 34/198 (17%), Positives = 62/198 (31%), Gaps = 35/198 (17%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98
+ + + V S + LA+G + + L G ++ + H
Sbjct: 151 SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLL--LGLDG--HEIFKEKLHKAK 206
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
V ++ L++T+S D TV++WD R K D N
Sbjct: 207 VTHAEFNPRCDWLMATSSVDATVKLWDLRNIK-----------------------DKNSY 243
Query: 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGEN--------I 210
+ H V+ ++ T+ L T +R++ + + I
Sbjct: 244 IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPI 303
Query: 211 NITWAPNGNTIAVGNKED 228
TW P + I G D
Sbjct: 304 KATWHPMYDLIVAGRYPD 321
Score = 101 bits (253), Expect = 5e-25
Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 33/223 (14%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTH-NDIKEYQAHGSKVHSVAWSCDGRRL-ASGS 70
S ++L +G + ++I + + H +KV ++ L A+ S
Sbjct: 172 SVSRQMLATGDS-------TGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSS 224
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART-- 128
D +V ++ L D N + H V+ ++ T+ L T +R++ +
Sbjct: 225 VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWS 284
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 188
+ QI++ + + + + L PD + +
Sbjct: 285 KPDQIIIHPHRQFQHLTPI--------------KATWHPMYDLIVAGRYPDDQLLLNDKR 330
Query: 189 TVRIWDARTQKSQIIAT-KGENIN-----ITWAPNGNTIAVGN 225
T+ I+DA + ++ + N ++P G+ +A G
Sbjct: 331 TIDIYDANS--GGLVHQLRDPNAAGIISLNKFSPTGDVLASGM 371
Score = 94.7 bits (236), Expect = 1e-22
Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 31/182 (17%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD-KKGDLNKEVVYRGHTGSVDQLCWHA 106
S +H + S G+ + + F K L++ V L WH
Sbjct: 26 VGQTSILHYIYKSSLGQSIHAQLRQCLQEPFIRSLKSYKLHR--TASPFDRRVTSLEWHP 83
Query: 107 TNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
T+P ++ S + +WD + + G
Sbjct: 84 THPTTVAVGSKGGDIILWDYDV------------------------QNKTSFIQGMGPGD 119
Query: 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN----ITWAPNGNTIA 222
++ + ++ N + L +S + D Q+ A + + + +A
Sbjct: 120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLA 179
Query: 223 VG 224
G
Sbjct: 180 TG 181
Score = 76.2 bits (188), Expect = 4e-16
Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 40/160 (25%)
Query: 50 HGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEV-----------VYRGHTG 97
H V++ ++ D +L + + +++ ++ + +
Sbjct: 249 HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWH 308
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157
+ L PD + +T+ I+DA + G L
Sbjct: 309 PMYDLIVAGRYPDDQLLLNDKRTIDIYDANS------------------------GGLVH 344
Query: 158 EVVYRGHTGSVDQLCWHATNPDLLSTASG-DKTVRIWDAR 196
++ G + + P ASG + IW+
Sbjct: 345 QLRDPNAAGIISLNKFS---PTGDVLASGMGFNILIWNRE 381
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 104 bits (261), Expect = 4e-26
Identities = 47/178 (26%), Positives = 71/178 (39%), Gaps = 31/178 (17%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
I Q H S+V +AW DG +LASG D V I+ H +V +
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT---KTNHNAAVKAVA 266
Query: 104 WHATNPDLLSTASG--DKTVRIWDARTQK--------SQIM----------LAS--GSFD 141
W +LL+T G DK + W+A T SQ+ + S G D
Sbjct: 267 WCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPD 326
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+++I++ L K+V H V +PD +LSTA+ D+ ++ W
Sbjct: 327 NNLSIWSY-SSSGLTKQVDIPAHDTRVLYSAL---SPDGRILSTAASDENLKFWRVYD 380
Score = 104 bits (261), Expect = 5e-26
Identities = 43/179 (24%), Positives = 64/179 (35%), Gaps = 44/179 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATN 108
+ V SV WS DG L+ G + V I+ ++ ++ GH V L W N
Sbjct: 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES----QTKLRTMAGHQARVGCLSW---N 185
Query: 109 PDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 168
+LS+ S + D R QI +GH+ V
Sbjct: 186 RHVLSSGSRSGAIHHHDVRIANHQIG-------------------------TLQGHSSEV 220
Query: 169 DQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN----ITWAPNGNTI 221
L W D L++ D V+IWDAR+ S TK + + W P + +
Sbjct: 221 CGLAW---RSDGLQLASGGNDNVVQIWDARS--SIPKFTKTNHNAAVKAVAWCPWQSNL 274
Score = 96.1 bits (240), Expect = 4e-23
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 38/184 (20%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ H ++V ++W + L+SGS ++ D + ++ +GH+ V L
Sbjct: 169 LRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHH--DVRIANHQIGTLQGHSSEVCGLA 224
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
W D L++ D V+IWDAR+ +
Sbjct: 225 W---RSDGLQLASGGNDNVVQIWDARSSIPK--------------------------FTK 255
Query: 162 RGHTGSVDQLCWHATNPDLLSTASG--DKTVRIWDART-QKSQIIATKGENINITWAPNG 218
H +V + W +LL+T G DK + W+A T + + + ++ W+P+
Sbjct: 256 TNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHS 315
Query: 219 NTIA 222
I
Sbjct: 316 KEIM 319
Score = 72.3 bits (178), Expect = 1e-14
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 50 HGSKVHSVAWSCDGRRLAS--GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
GS+V S+ WS + + S G D +++I++ L K+V H V
Sbjct: 302 AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSY-SSSGLTKQVDIPAHDTRVLYSAL--- 357
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDK--SVAI 146
+PD +LSTA+ D+ ++ W + S+ I
Sbjct: 358 SPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSSITI 400
Score = 50.3 bits (121), Expect = 2e-07
Identities = 17/110 (15%), Positives = 34/110 (30%), Gaps = 35/110 (31%)
Query: 94 GHTGSV--DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
G + L W N +++ + ++ V +W+A + +
Sbjct: 89 GIIDDYYLNLLDWSNLN--VVA-VALERNVYVWNADSGSVSALAE--------------- 130
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
+ V + W + D LS G+ V I+D +Q
Sbjct: 131 ----------TDESTYVASVKW---SHDGSFLSVGLGNGLVDIYDVESQT 167
Score = 46.5 bits (111), Expect = 4e-06
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 163 GHTGSV--DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT---WAPN 217
G + L W N +++ + ++ V +W+A + +A E+ + W+ +
Sbjct: 89 GIIDDYYLNLLDWSNLN--VVA-VALERNVYVWNADSGSVSALAETDESTYVASVKWSHD 145
Query: 218 GNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGH 251
G+ ++VG LV DV + RT+ GH
Sbjct: 146 GSFLSVGLGNGLVDIYDVESQT--KLRTM--AGH 175
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 102 bits (257), Expect = 5e-26
Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 51/221 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP + L S S D +K K H + VAWS D L S S
Sbjct: 32 SPNGEWLASSSA-------DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS 84
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
DK++ I+ + G K +GH+ V + NP L+ + S D++VRIWD +T
Sbjct: 85 DDKTLKIWDV-SSGKCLK--TLKGHSNYVFCCNF---NPQSNLIVSGSFDESVRIWDVKT 138
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
K L H+ V + + N D L+ ++S
Sbjct: 139 GKCLKTL--------------------------PAHSDPVSAVHF---NRDGSLIVSSSY 169
Query: 187 DKTVRIWDARTQKSQIIATKGENINIT---WAPNGNTIAVG 224
D RIWD + + +N ++ ++PNG I
Sbjct: 170 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA 210
Score = 99.1 bits (248), Expect = 1e-24
Identities = 36/187 (19%), Positives = 65/187 (34%), Gaps = 41/187 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+K AH V +V ++ DG + S S+D I+ G K ++ V +
Sbjct: 142 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-ASGQCLKTLI-DDDNPPVSFVK 199
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ +P+ + A+ D T+++WD K Y
Sbjct: 200 F---SPNGKYILAATLDNTLKLWDYSKGKCL--------------------------KTY 230
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWA 215
GH + + + + + S D V IW+ +T+ +I+ I+
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK--EIVQKLQGHTDVVISTACH 288
Query: 216 PNGNTIA 222
P N IA
Sbjct: 289 PTENIIA 295
Score = 94.1 bits (235), Expect = 9e-23
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 39/152 (25%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V SV +S +G LAS S DK + I+ G K GH + + W +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGA-YDGKFEK--TISGHKLGISDVAW---SS 75
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D LL +AS DKT++IWD + K L +GH+
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTL--------------------------KGHSNY 109
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDART 197
V + NP L+ + S D++VRIWD +T
Sbjct: 110 VFCCNF---NPQSNLIVSGSFDESVRIWDVKT 138
Score = 70.2 bits (173), Expect = 2e-14
Identities = 37/166 (22%), Positives = 62/166 (37%), Gaps = 53/166 (31%)
Query: 67 ASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPD--LLSTASGDKTVR 122
A+ S V N + + GHT +V + + P+ L+++S DK ++
Sbjct: 1 ATQSKPTPVK---------PNYALKFTLAGHTKAVSSVKFS---PNGEWLASSSADKLIK 48
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--L 180
IW A K + + GH + + W + D L
Sbjct: 49 IWGAYDGKFEKTI--------------------------SGHKLGISDVAW---SSDSNL 79
Query: 181 LSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
L +AS DKT++IWD + + + T KG + + P N I
Sbjct: 80 LVSASDDKTLKIWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIV 123
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 103 bits (259), Expect = 8e-26
Identities = 7/220 (3%), Positives = 24/220 (10%), Gaps = 39/220 (17%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
+ + + H +
Sbjct: 75 PQDIIVQSARPY-------GQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLI 127
Query: 71 FDKSVAIFALDKKGDLNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 126
K+ L + A N S +
Sbjct: 128 LTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVL 187
Query: 127 RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 186
+ + + + + +
Sbjct: 188 QMRGTILPGHKWDV---------------------MVDLFFYRDPEEAKEQEEEEAALVA 226
Query: 187 DKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
+ + + + P
Sbjct: 227 PDYGAVAEYAAPA-ADTWGGEWGTDAAAQPAAIPAQAGAD 265
Score = 96.1 bits (240), Expect = 3e-23
Identities = 11/214 (5%), Positives = 31/214 (14%), Gaps = 40/214 (18%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ ++ I+ + G + + + +
Sbjct: 18 DIQMMLAADVHLGTKNCDFQMER-YVYKRRTDGIYII-NLGKTWE--KLQLAARVIVAIE 73
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQK---------SQIM----------LASGSFDK 142
D + S + + A+
Sbjct: 74 N---PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTD 130
Query: 143 SVAIFALDKKGDLNKEV----VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 198
K+ L + A N S + + +
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR 190
Query: 199 KS----QIIATKGENINIT----WAPNGNTIAVG 224
+ + A
Sbjct: 191 GTILPGHKWDVMVDLFFYRDPEEAKEQEEEEAAL 224
Score = 92.6 bits (231), Expect = 5e-22
Identities = 0/158 (0%), Positives = 0/158 (0%), Gaps = 36/158 (22%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-- 107
A + A + + V
Sbjct: 248 GTDAAAQPAAIPAQAGADWTAAPAPAAGGWDTAAAPAP---GWEQGSAPVPAAAPTPNWG 304
Query: 108 --NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
Sbjct: 305 ---------------------- 342
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
Sbjct: 343 --- 377
Score = 92.3 bits (230), Expect = 9e-22
Identities = 0/196 (0%), Positives = 0/196 (0%), Gaps = 44/196 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCDGR-RLASGSFDKSVAIFALD---KKGDLNKEVVYRGHTGSV 99
+ + + + + + G +A L +K
Sbjct: 150 AFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWD-VMVDLFFY 208
Query: 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV 159
+ + + + +
Sbjct: 209 RDPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTW------------------------- 243
Query: 160 VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN------ 211
T + Q P + +G
Sbjct: 244 GGEWGTDAAAQPAAI---PAQAGADWTAAPAPAAGGWDTAAAPAPGWEQGSAPVPAAAPT 300
Query: 212 ---ITWAPNGNTIAVG 224
Sbjct: 301 PNW 316
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 103 bits (258), Expect = 3e-25
Identities = 31/202 (15%), Positives = 60/202 (29%), Gaps = 33/202 (16%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
AH V + WS DG ++AS S DK++ I+ + + K + G QL T
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA-TLKVEKTIP-VGTRIEDQQLGIIWT 293
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQI-------------------MLASGSFDKSVAIFA 148
L + S + + + L S + + +
Sbjct: 294 K-QALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW- 351
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIATKG 207
D ++ V H + + L T S D +++ A
Sbjct: 352 -DISTGISNRVFPDVHATMITGIKTT---SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVA 407
Query: 208 ENIN-----ITWAPNGNTIAVG 224
++ + + +G+
Sbjct: 408 NKLSSQPLGLAVSADGDIAVAA 429
Score = 103 bits (258), Expect = 4e-25
Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 49/218 (22%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
S + + + ++ ++ + ++ VA S D + +A G D
Sbjct: 420 SADGDIAVAAC--------YKHIAIYSHGKLTEVPISYN--SSCVALSNDKQFVAVGGQD 469
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 130
V ++ G EV H + + + + L + V +
Sbjct: 470 SKVHVY--KLSGASVSEVKTIVHPAEITSVAFS---NNGAFLVATDQSRKVIPYSVANNF 524
Query: 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDK 188
L + HT V + W +PD L+T S D
Sbjct: 525 E-----------------------LAHTNSWTFHTAKVACVSW---SPDNVRLATGSLDN 558
Query: 189 TVRIWDARTQKSQIIATKGEN----INITWAPNGNTIA 222
+V +W+ I KG + +N N TI
Sbjct: 559 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 596
Score = 96.9 bits (242), Expect = 5e-23
Identities = 32/211 (15%), Positives = 68/211 (32%), Gaps = 36/211 (17%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79
P+G + Y + D + Y H + S G ASG +V I+
Sbjct: 28 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWD 87
Query: 80 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG--DKTVRIWDARTQKSQIML 135
+ + K +G V + W + ++ ++ ++ T S
Sbjct: 88 TTQTTHILKT-TIPVFSGPVKDISWD---SESKRIAAVGEGRERFGHVFLFDTGTS---- 139
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
G+L G +++ + + + P + + S D TV I++
Sbjct: 140 ----------------NGNL------TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG 177
Query: 196 RTQK-SQIIATKGENIN-ITWAPNGNTIAVG 224
K + ++ + + P+G+ A
Sbjct: 178 PPFKFKSTFGEHTKFVHSVRYNPDGSLFAST 208
Score = 91.5 bits (228), Expect = 4e-21
Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 34/151 (22%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H +++ SVA+S +G L + + V +++ +L + HT V + W
Sbjct: 488 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSW--- 544
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+PD L+T S D +V +W+ + ++ H
Sbjct: 545 SPDNVRLATGSLDNSVIVWNMNK------------------------PSDHPIIIKGAHA 580
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWD 194
S + + +A D ++ W+
Sbjct: 581 MSSVNSVIW---LNETTIVSAGQDSNIKFWN 608
Score = 74.5 bits (184), Expect = 2e-15
Identities = 19/159 (11%), Positives = 43/159 (27%), Gaps = 44/159 (27%)
Query: 50 HGSKVHSVAWSCDGRRL--ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+ + G ++ +G+ +V + G L +Y H+
Sbjct: 17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPV------GSLTDTEIYTEHSHQTTVAKT--- 67
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+P ++ VRIWD + I+ +
Sbjct: 68 SPSGYYCASGDVHGNVRIWDTTQ-TTHILKT-----------------------TIPVFS 103
Query: 166 GSVDQLCWHATNPD--LLSTASG--DKTVRIWDARTQKS 200
G V + W + ++ ++ ++ T S
Sbjct: 104 GPVKDISWD---SESKRIAAVGEGRERFGHVFLFDTGTS 139
Score = 40.6 bits (96), Expect = 3e-04
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75
I AH + + + S D ++
Sbjct: 573 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNI 604
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 100 bits (250), Expect = 2e-24
Identities = 33/198 (16%), Positives = 61/198 (30%), Gaps = 55/198 (27%)
Query: 48 QAHGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLN--KEVVYRGHTGSVDQLCW 104
H V +V W D S SFDK++ ++ D N + +V
Sbjct: 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVW------DTNTLQTADVFNFEETVYSHHM 149
Query: 105 H--ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYR 162
+T L++ + V++ D ++ +L +
Sbjct: 150 SPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL--------------------------Q 183
Query: 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN----------- 211
GH + + W +L+TAS D V++WD R +I N
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTA 243
Query: 212 -------ITWAPNGNTIA 222
+ + +G +
Sbjct: 244 HNGKVNGLCFTSDGLHLL 261
Score = 96.5 bits (241), Expect = 3e-23
Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 22/187 (11%)
Query: 50 HGSKVHSVAWSCDGRR---LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
V+S S + +A G+ V + L K G + + +GH + + W
Sbjct: 140 FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDL-KSGSCSH--ILQGHRQEILAVSWSP 196
Query: 107 TNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+L+TAS D V++WD R ++ + K E H G
Sbjct: 197 RYDYILATASADSRVKLWDVRRASGCLITLDQH----------NGKKSQAVESANTAHNG 246
Query: 167 SVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVG 224
V+ LC+ D L T D +R+W++ + + G+ N + T++ G
Sbjct: 247 KVNGLCFT---SDGLHLLTVGTDNRMRLWNSSNGE-NTLVNYGKVCNNSKKGLKFTVSCG 302
Query: 225 NKEDLVT 231
+ V
Sbjct: 303 CSSEFVF 309
Score = 96.2 bits (240), Expect = 4e-23
Identities = 25/173 (14%), Positives = 59/173 (34%), Gaps = 40/173 (23%)
Query: 40 THNDIKEYQAHGSKVHSVAWS-CDGRRLASGSFDKSVAI----------FALDKKGDLNK 88
+ D + HG ++++ +GR + SG D + + + K
Sbjct: 32 LNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIG 91
Query: 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
H SV+ + W+ + + +++S DKT+++WD T ++ +
Sbjct: 92 RDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF------------- 138
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWH--ATNPDLLSTASGDKTVRIWDARTQK 199
+V +T L++ + V++ D ++
Sbjct: 139 --------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177
Score = 92.7 bits (231), Expect = 7e-22
Identities = 22/181 (12%), Positives = 49/181 (27%), Gaps = 35/181 (19%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAI--FALDKKGDLNKEVVYRGHTGSVDQLCWH 105
AH KV+ + ++ DG L + D + + + + +N V +
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC 301
Query: 106 ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+ + + T+ ++ + + ML +GH
Sbjct: 302 GCSSEFVF-VPYGSTIAVYTVYSGEQITML--------------------------KGHY 334
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAV 223
+VD + + L + S D + W + + P
Sbjct: 335 KTVDCCVFQ---SNFQELYSGSRDCNILAWVPSLYE-PVPDDDETTTKSQLNPAFEDAWS 390
Query: 224 G 224
Sbjct: 391 S 391
Score = 78.1 bits (193), Expect = 8e-17
Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 24/175 (13%)
Query: 56 SVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA 115
S + L + + + L+ D + V R H G ++ L + +
Sbjct: 6 SARQTGLEDPLRLRRAESTRRVLGLELNKDRD---VERIHGGGINTLDIEPVEGRYMLSG 62
Query: 116 SGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175
D + ++D Q + H SV+ + W+
Sbjct: 63 GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHP-------------DVHRYSVETVQWYP 109
Query: 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATKG--ENIN-ITWAPNGNT---IAVG 224
+ + +++S DKT+++WD T Q E + +P +AVG
Sbjct: 110 HDTGMFTSSSFDKTLKVWDTNTL--QTADVFNFEETVYSHHMSPVSTKHCLVAVG 162
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 98.8 bits (247), Expect = 4e-24
Identities = 45/221 (20%), Positives = 85/221 (38%), Gaps = 60/221 (27%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+ + SV +S DG+ LA+G+ D+ + I+ + + + + +GH + L +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI-ENRKIVM--ILQGHEQDIYSLDY--- 173
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQI-------------------MLASGSFDKSV-- 144
P L + SGD+TVRIWD RT + + +A+GS D++V
Sbjct: 174 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 233
Query: 145 -------AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDA 195
+ LD + + GH SV + + D + + S D++V++W+
Sbjct: 234 WDSETGFLVERLDSENE-----SGTGHKDSVYSVVFT---RDGQSVVSGSLDRSVKLWNL 285
Query: 196 RTQKSQ---IIATKGENIN-----------ITWAPNGNTIA 222
+ ++ G + N I
Sbjct: 286 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326
Score = 96.9 bits (242), Expect = 2e-23
Identities = 37/164 (22%), Positives = 58/164 (35%), Gaps = 45/164 (27%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSV---------AIFALDKKGDLNKEVVYRGHTGSVD 100
H V+SV ++ DG+ + SGS D+SV EV Y GH V
Sbjct: 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 314
Query: 101 QLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
+ + + + S D+ V WD ++ +ML
Sbjct: 315 SVAT---TQNDEYILSGSKDRGVLFWDKKSGNPLLML----------------------- 348
Query: 159 VVYRGHTGSVDQLCW---HATNPD--LLSTASGDKTVRIWDART 197
+GH SV + + P+ + +T SGD RIW +
Sbjct: 349 ---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 92.3 bits (230), Expect = 9e-22
Identities = 33/204 (16%), Positives = 77/204 (37%), Gaps = 35/204 (17%)
Query: 31 IDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV---AIFALDKKGDLN 87
+D Y+ +N H + D + + ++ ++ +++
Sbjct: 1 MDHYLVPYNQ------RANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREID 54
Query: 88 KEVV-YRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSV 144
E+ HT V + + + D L+T +KT +++ L+ S
Sbjct: 55 VELHKSLDHTSVVCCVKF---SNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS----- 105
Query: 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQI 202
A +K + + +C+ +PD L+T + D+ +RIWD + +I
Sbjct: 106 ---AANKDPENLNTSSSPSSDLYIRSVCF---SPDGKFLATGAEDRLIRIWDIENR--KI 157
Query: 203 IAT-KG--ENIN-ITWAPNGNTIA 222
+ +G ++I + + P+G+ +
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLV 181
Score = 70.3 bits (173), Expect = 4e-14
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHT 96
N+ Y H V SVA + + + SGS D+ V + + + +GH
Sbjct: 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKK-----SGNPLLMLQGHR 352
Query: 97 GSVDQLCW---HATNPD--LLSTASGDKTVRIWDART 128
SV + + P+ + +T SGD RIW +
Sbjct: 353 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 98.0 bits (245), Expect = 4e-24
Identities = 57/223 (25%), Positives = 81/223 (36%), Gaps = 53/223 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
+ +LL S SQ D + T N + S V + A++ G +A G
Sbjct: 64 GTDSRLLLSASQ-------DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGG 116
Query: 71 FDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDAR 127
D +I+ L K + N V GHTG + + D + T+SGD T +WD
Sbjct: 117 LDNICSIYNL-KTREGNVRVSRELAGHTGYLSCCRFL---DDNQIVTSSGDTTCALWDIE 172
Query: 128 TQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTAS 185
T + GHTG V L PD L + +
Sbjct: 173 TGQQTTTF--------------------------TGHTGDVMSLSL---APDTRLFVSGA 203
Query: 186 GDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
D + ++WD R T G +IN I + PNGN A G
Sbjct: 204 CDASAKLWDVREG--MCRQTFTGHESDINAICFFPNGNAFATG 244
Score = 94.9 bits (237), Expect = 5e-23
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 46/185 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL---NKEVVYRGHTGSVDQLCWHA 106
H +K++++ W D R L S S D + I+ D NK + V +
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIW------DSYTTNKVHAIPLRSSWVMTCAY-- 105
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P ++ D I++ +T++ + ++ GH
Sbjct: 106 -APSGNYVACGGLDNICSIYNLKTREGNVRVSR----------------------ELAGH 142
Query: 165 TGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGN 219
TG + + D + T+SGD T +WD T Q T G+ ++++ AP+
Sbjct: 143 TGYLSCCRFL---DDNQIVTSSGDTTCALWDIET--GQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 220 TIAVG 224
G
Sbjct: 198 LFVSG 202
Score = 86.0 bits (214), Expect = 1e-19
Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 37/149 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H S ++++ + +G A+GS D + +F L + + + + + +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDL-RADQELMTYSHDNIICGITSVSF---SK 280
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
LL D +WDA +L GH
Sbjct: 281 SGRLLLAGYDDFNCNVWDALKADRAGVL--------------------------AGHDNR 314
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWD 194
V L D ++T S D ++IW+
Sbjct: 315 VSCLGV---TDDGMAVATGSWDSFLKIWN 340
Score = 69.1 bits (170), Expect = 9e-14
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 19/119 (15%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSK--VHSVAWSCDGRRLAS 68
P +GS D + F+ D + Y + SV++S GR L +
Sbjct: 235 FPNGNAFATGSD-------DATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 69 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWD 125
G D + ++ K D V GH V L D ++T S D ++IW+
Sbjct: 288 GYDDFNCNVWDA-LKADRAG--VLAGHDNRVSCLGV---TDDGMAVATGSWDSFLKIWN 340
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 98.0 bits (244), Expect = 5e-24
Identities = 30/226 (13%), Positives = 58/226 (25%), Gaps = 35/226 (15%)
Query: 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
++ QA + + L S+D S+ ++ D + + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ + + + D S L
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQAL-------------------------- 95
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAP----- 216
+ ++ D L AS D + + D R +IA K N N T
Sbjct: 96 TNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155
Query: 217 ---NGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLW 259
N + + VG V + + S G + R +
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEES-GLKYQIRDVA 200
Score = 67.2 bits (164), Expect = 4e-13
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 19/186 (10%)
Query: 44 IKEYQAHGSKVHSVAWSCD--GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
+K ++ +KV + ++ D RL G + V F L D N + G +
Sbjct: 139 VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRD 198
Query: 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ + + +S D V + Q + + +
Sbjct: 199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC-----------HRLNLKD 247
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINIT-WAPNG 218
V+ + + P L TA D + W+ +T+K K ++ A +
Sbjct: 248 TNLAYPVNSIEFS---PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSD 304
Query: 219 NTIAVG 224
N + +
Sbjct: 305 NILCLA 310
Score = 54.5 bits (131), Expect = 8e-09
Identities = 34/205 (16%), Positives = 59/205 (28%), Gaps = 48/205 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVA-WSCDGRRLASGSF 71
L G V + N E ++ VA + A S
Sbjct: 157 DTNSSRLIVGMNNSQVQWFR--LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214
Query: 72 DKSVAIFALDKKGDL------------NKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 117
D VA+ D +GD + V+ + + P L TA
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS---PRHKFLYTAGS 271
Query: 118 DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 177
D + W+ +T+K A + + SV ++ A +
Sbjct: 272 DGIISCWNLQTRKKIKNFA-------------------------KFNEDSVVKI---ACS 303
Query: 178 PDLLSTASGDKTVRIWDARTQKSQI 202
++L A+ D T + A Q ++
Sbjct: 304 DNILCLATSDDTFKTNAAIDQTIEL 328
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 98.2 bits (245), Expect = 9e-24
Identities = 40/172 (23%), Positives = 76/172 (44%), Gaps = 27/172 (15%)
Query: 44 IKEYQAHGSKVHSV-AWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102
++ V D +++ SG D ++ I+ + + + GHTGSV L
Sbjct: 123 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK-NTLECKR--ILTGHTGSV--L 177
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQK-----------------SQIMLASGSFDKSVA 145
C + ++ T S D TVR+WD T + + M+ + S D+S+A
Sbjct: 178 CL-QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 236
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
++ + D+ V GH +V+ + + + +ASGD+T+++W+ T
Sbjct: 237 VWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTST 285
Score = 89.3 bits (222), Expect = 1e-20
Identities = 29/154 (18%), Positives = 58/154 (37%), Gaps = 34/154 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ H V + + + + + S D+S+A++ + D+ V GH +V+ +
Sbjct: 206 LNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVD 263
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ + +ASGD+T+++W+ T + L G
Sbjct: 264 FD---DKYIVSASGDRTIKVWNTSTCEFVRTL--------------------------NG 294
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
H + L L+ + S D T+R+WD
Sbjct: 295 HKRGIACL---QYRDRLVVSGSSDNTIRLWDIEC 325
Score = 80.8 bits (200), Expect = 1e-17
Identities = 25/156 (16%), Positives = 56/156 (35%), Gaps = 28/156 (17%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ H + + + R + SGS D ++ ++ + + G + V GH V +
Sbjct: 289 VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDI-ECGACLR--VLEGHEELVRCIR 343
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ + + + + D +++WD A +
Sbjct: 344 F---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLR-----------------TLVE 383
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
H+G V +L + + + ++S D T+ IWD
Sbjct: 384 HSGRVFRLQF---DEFQIVSSSHDDTILIWDFLNDP 416
Score = 58.9 bits (143), Expect = 4e-10
Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAI------FALDKKGDLNKEVVYRGHTGSVDQ 101
+ H V + + D +R+ SG++D + + H+G V +
Sbjct: 333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390
Query: 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFA 148
L + + + ++S D T+ IWD + S ++ +
Sbjct: 391 LQF---DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTYTYIS 434
Score = 35.8 bits (83), Expect = 0.010
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
+ + + + + + D T++IWD T +
Sbjct: 127 HCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE 164
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 97.2 bits (243), Expect = 9e-24
Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 47/200 (23%)
Query: 36 KHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH 95
K+ N K H + + + +++ ++ + S D + A++ + + G L + + GH
Sbjct: 139 KNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDV-ESGQLLQ--SFHGH 195
Query: 96 TGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
V L P + DK +WD R+ +
Sbjct: 196 GADVLCLDL---APSETGNTFVSGGCDKKAMVWDMRSGQCVQAF---------------- 236
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGEN 209
H V+ + ++ P ++ S D T R++D R + ++ E+
Sbjct: 237 ----------ETHESDVNSVRYY---PSGDAFASGSDDATCRLYDLRADR-EVAIYSKES 282
Query: 210 IN-----ITWAPNGNTIAVG 224
I + ++ +G + G
Sbjct: 283 IIFGASSVDFSLSGRLLFAG 302
Score = 93.8 bits (234), Expect = 2e-22
Identities = 30/189 (15%), Positives = 61/189 (32%), Gaps = 43/189 (22%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDK-----SVAIFALDKKGDLNKEVVY------RGHT 96
+ + L ++ V + + ++ + + V +GH
Sbjct: 5 DGLHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHG 64
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK---------SQIM----------L 135
V + W D + ++S D V +WD+ T + +M +
Sbjct: 65 NKVLCMDWC---KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAI 121
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYR---GHTGSVDQLCWHATNPD--LLSTASGDKTV 190
A G D +++ L + N + HT + + + TASGD T
Sbjct: 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF---TNSDMQILTASGDGTC 178
Query: 191 RIWDARTQK 199
+WD + +
Sbjct: 179 ALWDVESGQ 187
Score = 81.8 bits (203), Expect = 3e-18
Identities = 30/154 (19%), Positives = 49/154 (31%), Gaps = 37/154 (24%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ ++ H S V+SV + G ASGS D + ++ L + +
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL-RADREVAIYSKESIIFGASSVD 291
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ LL D T+ +WD +L
Sbjct: 292 FS---LSGRLLFAGYNDYTINVWDVLKGSRVSIL-------------------------- 322
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 193
GH V L +PD + S D T+R+W
Sbjct: 323 FGHENRVSTLRV---SPDGTAFCSGSWDHTLRVW 353
Score = 64.1 bits (157), Expect = 5e-12
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSK--VHSVAWSCDGRRLAS 68
P SGS D + ++ D + Y SV +S GR L +
Sbjct: 249 YPSGDAFASGSD-------DATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301
Query: 69 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIW 124
G D ++ ++ + KG + GH V L +PD + S D T+R+W
Sbjct: 302 GYNDYTINVWDV-LKGSRVS--ILFGHENRVSTLRV---SPDGTAFCSGSWDHTLRVW 353
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 96.4 bits (241), Expect = 1e-23
Identities = 43/220 (19%), Positives = 76/220 (34%), Gaps = 54/220 (24%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
S + S S D +++ IK A ++A+S D + LA+G+
Sbjct: 89 SHTLPIAASSSL-------DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT 141
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
V IF + + G E + + + +PD L++ + D + I+D T
Sbjct: 142 HVGKVNIFGV-ESGKK--EYSLDTRGKFILSIAY---SPDGKYLASGAIDGIINIFDIAT 195
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
K L GH + L + PD LL TAS
Sbjct: 196 GKLLHTL--------------------------EGHAMPIRSLTFS---PDSQLLVTASD 226
Query: 187 DKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIA 222
D ++I+D + + + T +N+ + P+
Sbjct: 227 DGYIKIYDVQH--ANLAGTLSGHASWVLNVAFCPDDTHFV 264
Score = 92.1 bits (230), Expect = 5e-22
Identities = 38/191 (19%), Positives = 71/191 (37%), Gaps = 43/191 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCDGR----RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 99
K+ QAH + SVAW + + + +GS D V ++ L+ + GH V
Sbjct: 25 FKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWR-DERLDLQWSLEGHQLGV 83
Query: 100 DQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157
+ + + +++S D +R+WD K +
Sbjct: 84 VSVDI---SHTLPIAASSSLDAHIRLWDLENGKQIKSI---------------------- 118
Query: 158 EVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART-QKSQIIATKGENIN-IT 213
L + +PD L+T + V I+ + +K + T+G+ I I
Sbjct: 119 ----DAGPVDAWTLAF---SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA 171
Query: 214 WAPNGNTIAVG 224
++P+G +A G
Sbjct: 172 YSPDGKYLASG 182
Score = 90.2 bits (225), Expect = 2e-21
Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 45/181 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V SV S AS S D + ++ L + G K L + +P
Sbjct: 79 HQLGVVSVDISHTLPIAASSSLDAHIRLWDL-ENGKQIK--SIDAGPVDAWTLAF---SP 132
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D L+T + V I+ + K + L
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSL--------------------------DTRGKF 166
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTI 221
+ + + +PD L++ + D + I+D T +++ T +G I +T++P+ +
Sbjct: 167 ILSIAY---SPDGKYLASGAIDGIINIFDIATG--KLLHTLEGHAMPIRSLTFSPDSQLL 221
Query: 222 A 222
Sbjct: 222 V 222
Score = 90.2 bits (225), Expect = 2e-21
Identities = 27/150 (18%), Positives = 53/150 (35%), Gaps = 39/150 (26%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H + S+ +S D + L + S D + I+ + + +L GH V + + P
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDV-QHANLAG--TLSGHASWVLNVAF---CP 258
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D ++S DK+V++WD T+ H
Sbjct: 259 DDTHFVSSSSDKSVKVWDVGTRTCVHTF--------------------------FDHQDQ 292
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDA 195
V + + N + + + D+ + I+D
Sbjct: 293 VWGVKY---NGNGSKIVSVGDDQEIHIYDC 319
Score = 69.4 bits (171), Expect = 6e-14
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 23/121 (19%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP+ +LL + S D Y+K N H S V +VA+ D S S
Sbjct: 215 SPDSQLLVTASD-------DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS 267
Query: 71 FDKSVAIFALDKKGDLN--KEV-VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWD 125
DKSV ++ D+ V + H V + + N + + + D+ + I+D
Sbjct: 268 SDKSVKVW------DVGTRTCVHTFFDHQDQVWGVKY---NGNGSKIVSVGDDQEIHIYD 318
Query: 126 A 126
Sbjct: 319 C 319
Score = 67.5 bits (166), Expect = 3e-13
Identities = 24/168 (14%), Positives = 53/168 (31%), Gaps = 41/168 (24%)
Query: 66 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP---DLLSTASGDKTVR 122
S + + G L K + H ++ + W + + T S D V+
Sbjct: 5 HHHSSRENLYFQGTN-QYGILFK--QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVK 61
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--L 180
+W R ++ + GH V + + +
Sbjct: 62 VWKWRDERLDLQW------------------------SLEGHQLGVVSVDI---SHTLPI 94
Query: 181 LSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIAVG 224
+++S D +R+WD + I + + + ++P+ +A G
Sbjct: 95 AASSSLDAHIRLWDLENG--KQIKSIDAGPVDAWTLAFSPDSQYLATG 140
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 96.9 bits (242), Expect = 1e-23
Identities = 40/234 (17%), Positives = 81/234 (34%), Gaps = 53/234 (22%)
Query: 6 IQFHTPKSPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAH-----GSKVHSVA 58
+QF+ S E L + + V ++ +I+ Q++ ++ A
Sbjct: 24 VQFN-WHSKEGDPLVFATVG------SNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 76
Query: 59 WSCDGRR----LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 114
W+ D LA + I K Y GH ++++L +H +P+LL +
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINP-ITMQCIKH--YVGHGNAINELKFHPRDPNLLLS 133
Query: 115 ASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174
S D +R+W+ +T D VAIF GH V +
Sbjct: 134 VSKDHALRLWNIQT------------DTLVAIFG-----------GVEGHRDEVLSADYD 170
Query: 175 ATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
+ + D ++++W +++ + + + PN ++
Sbjct: 171 ---LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYD----YNPNKTNRPFISQ 217
Score = 83.8 bits (208), Expect = 6e-19
Identities = 34/221 (15%), Positives = 64/221 (28%), Gaps = 67/221 (30%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H +V S + G ++ S D S+ ++ +N + + S D NP
Sbjct: 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLW------RINSKRMMNAIKESYDY------NP 207
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+ + + + D T+ H VD
Sbjct: 208 NKTNRPFISQKIHFPDFSTR--------------------------------DIHRNYVD 235
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT------------WA-- 215
+ W DL+ + S + + W + I K N+T W
Sbjct: 236 CVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR 292
Query: 216 ----PNGNTIAVGNKEDLVTFI-DVVKSLPPRERTLTSRGH 251
+A+GN + ++ D+ P + + T H
Sbjct: 293 FSMDFWQKMLALGN-QVGKLYVWDLEVEDPHKAKCTTLTHH 332
Score = 75.8 bits (187), Expect = 5e-16
Identities = 23/174 (13%), Positives = 47/174 (27%), Gaps = 53/174 (30%)
Query: 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV----------- 91
D H + V V W G + S S + ++ + K D ++
Sbjct: 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGR 280
Query: 92 YRGHTGSVDQLCWHATNPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIF 147
+ + + + D +L+ + + +WD
Sbjct: 281 FDYSQCDIWYMRFS---MDFWQKMLALGNQVGKLYVWDLEV------------------- 318
Query: 148 ALDKKGDLNKEVVY--RGHT--GSVDQLCWHATNPD--LLSTASGDKTVRIWDA 195
D +K H ++ Q + D +L D ++ WD
Sbjct: 319 -----EDPHKAKCTTLTHHKCGAAIRQTSFS---RDSSILIAVCDDASIWRWDR 364
Score = 58.8 bits (143), Expect = 3e-10
Identities = 14/117 (11%), Positives = 34/117 (29%), Gaps = 37/117 (31%)
Query: 94 GHTGSVDQLCWHATNPD---LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
H + + ++ + + L+ G V +++ +Q +L
Sbjct: 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLL--------------- 60
Query: 151 KKGDLNKEVVYRGHTG-----SVDQLCW---HATNPDLLSTASGDKTVRIWDARTQK 199
+ + + W T+ LL+ A +RI + T +
Sbjct: 61 -----------QSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ 106
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 96.0 bits (240), Expect = 1e-23
Identities = 45/234 (19%), Positives = 82/234 (35%), Gaps = 43/234 (18%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
E +LL G + ++ + + + + + H V S+++ + SGS+D
Sbjct: 68 DSEKELLLFGGKDTMINGVP--LFATSGEDPLYTLIGHQGNVCSLSFQ--DGVVISGSWD 123
Query: 73 KSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131
K+ ++ V + H SV + + + TAS DKT+++W
Sbjct: 124 KTAKVW------KEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIK 177
Query: 132 QIM-----------------LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 174
S S D + + + GD+ + Y GH V +
Sbjct: 178 TFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDM-HTGDVLRT--YEGHESFVYCIKL- 233
Query: 175 ATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KGENINI---TWAPNGNTIA 222
P+ ++S D+TVRIW + I+I NG+ I
Sbjct: 234 --LPNGDIVS-CGEDRTVRIWSKEN--GSLKQVITLPAISIWSVDCMSNGDIIV 282
Score = 93.7 bits (234), Expect = 1e-22
Identities = 26/157 (16%), Positives = 48/157 (30%), Gaps = 31/157 (19%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98
+ ++SV + + L G D + L + GH G+
Sbjct: 47 DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN 106
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
V L + ++ + S DKT ++W +
Sbjct: 107 VCSLSF---QDGVVISGSWDKTAKVWKEGSLVY--------------------------- 136
Query: 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
+ H SV + + + TAS DKT+++W
Sbjct: 137 -NLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172
Score = 78.3 bits (194), Expect = 3e-17
Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 42/181 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V V D ++AS S D +V +++ D + V G ++ +C+ +
Sbjct: 17 HDQDVRDVVAV-DDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCY---DS 69
Query: 110 D--LLSTASGDKTVR---IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+ LL D + ++ + L GH
Sbjct: 70 EKELLLFGGKDTMINGVPLFATSGEDPLYTL--------------------------IGH 103
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW-APNGNTIAV 223
G+V L + ++ + S DKT ++W + + A + + + N
Sbjct: 104 QGNVCSLSF---QDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLT 160
Query: 224 G 224
Sbjct: 161 A 161
Score = 75.2 bits (186), Expect = 5e-16
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 38/153 (24%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
H V +A DG S S D + + + GD+ + Y GH V +
Sbjct: 182 IHNDVVRHLAVVDDGH-FISCSNDGLIKLVDM-HTGDVLRT--YEGHESFVYCIKL---L 234
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
P+ ++S D+TVRIW + ++
Sbjct: 235 PNGDIVS-CGEDRTVRIWSKENGSLKQVI--------------------------TLPAI 267
Query: 167 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
S+ + + N D++ S D VRI+ +
Sbjct: 268 SIWSVDCMS-NGDIIV-GSSDNLVRIFSQEKSR 298
Score = 58.3 bits (142), Expect = 4e-10
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
++ Y+ H S V+ + +G + S D++V I++ + G L + V S+ +
Sbjct: 218 LRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSK-ENGSLKQ--VITLPAISIWSVD 273
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQK 130
+ N D++ S D VRI+ +
Sbjct: 274 CMS-NGDIIV-GSSDNLVRIFSQEKSR 298
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 96.0 bits (240), Expect = 2e-23
Identities = 43/240 (17%), Positives = 82/240 (34%), Gaps = 43/240 (17%)
Query: 17 KLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSV 75
SG + + H V +A + + S S DK++
Sbjct: 5 HHHSSGVDLGTE-NLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTI 63
Query: 76 AIFALDKKGDLNKEVVY--RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 131
++ L + RGH+ V + D + S D T+R+WD T +
Sbjct: 64 IMWKLTRDETNYGIPQRALRGHSHFVSDVVIS---SDGQFALSGSWDGTLRLWDLTTGTT 120
Query: 132 QI-------------------MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172
+ SGS DK++ ++ + G V H+ V +
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCKYTVQDESHSEWVSCVR 178
Query: 173 WHATNPD----LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
+ P+ ++ + DK V++W+ ++ G +N +T +P+G+ A G
Sbjct: 179 FS---PNSSNPIIVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSPDGSLCASG 233
Score = 95.7 bits (239), Expect = 3e-23
Identities = 44/214 (20%), Positives = 78/214 (36%), Gaps = 47/214 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H V SVA+S D R++ SGS DK++ ++ + G V H+ V + + P
Sbjct: 127 HTKDVLSVAFSSDNRQIVSGSRDKTIKLW--NTLGVCKYTVQDESHSEWVSCVRFS---P 181
Query: 110 D----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
+ ++ + DK V++W+ K + GHT
Sbjct: 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNH--------------------------IGHT 215
Query: 166 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNTIA 222
G ++ + PD L ++ D +WD K G+ IN + ++PN +
Sbjct: 216 GYLNTVTVS---PDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272
Query: 223 VGNKE-----DLVTFIDVVKSLPPRERTLTSRGH 251
DL +V L + +S+
Sbjct: 273 AATGPSIKIWDLEG-KIIVDELKQEVISTSSKAE 305
Score = 83.3 bits (207), Expect = 1e-18
Identities = 32/155 (20%), Positives = 51/155 (32%), Gaps = 38/155 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK-EVVY--RGHTGSVDQLCWHA 106
H +++V S DG ASG D ++ DLN+ + +Y G ++ LC+
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLW------DLNEGKHLYTLDGG-DIINALCFS- 265
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P+ L A+ +++IWD + L S +
Sbjct: 266 --PNRYWLCAAT-GPSIKIWDLEGKIIVDELKQEVISTS-----------------SKAE 305
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
L W D L D VR+W
Sbjct: 306 PPQCTSLAWS---ADGQTLFAGYTDNLVRVWQVTI 337
Score = 80.6 bits (200), Expect = 8e-18
Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 27/141 (19%)
Query: 62 DGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCWHATNPDLLSTASGDKT 120
+SG + ++ + +GH G V Q+ PD++ +AS DKT
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKT 62
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD- 179
+ +W ++ + + RGH+ V + D
Sbjct: 63 IIMWKLTRDETNYGIPQRAL---------------------RGHSHFVSDVVIS---SDG 98
Query: 180 -LLSTASGDKTVRIWDARTQK 199
+ S D T+R+WD T
Sbjct: 99 QFALSGSWDGTLRLWDLTTGT 119
Score = 66.0 bits (162), Expect = 1e-12
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 22/126 (17%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP+ L SG + D N + ++++ +S + L + +
Sbjct: 224 SPDGSLCASGGK-------DGQAMLWDLNEGKHLYTLDGGDI-INALCFSPNRYWLCAAT 275
Query: 71 FDKSVAIF------ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVR 122
S+ I+ +D+ + L W D L D VR
Sbjct: 276 -GPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS---ADGQTLFAGYTDNLVR 331
Query: 123 IWDART 128
+W
Sbjct: 332 VWQVTI 337
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 98.1 bits (245), Expect = 2e-23
Identities = 29/210 (13%), Positives = 69/210 (32%), Gaps = 35/210 (16%)
Query: 44 IKEYQAHGSKVHSVAWSC---DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 100
+K + V ++ D ++ A+ D ++ ++ + ++
Sbjct: 242 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDV-TTSKCVQKWTLDKQQLGNQ 300
Query: 101 QLCWHATNPDLLSTASGDKTVRIWDARTQK---------SQIM------LASGSFDKSVA 145
Q+ AT + + S D T+ ++ + I L SGS+D +
Sbjct: 301 QVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIM 360
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
+ + +++ H+ + L + S+ S D T+++ +
Sbjct: 361 EW--------SSSSMHQDHSNLIVSLDN--SKAQEYSSISWDDTLKVNGITKHEF----- 405
Query: 206 KGENINITWAPNGNTIAVGNKEDLVTFIDV 235
G + A N AV +D + +
Sbjct: 406 -GSQPKVASANNDGFTAVLTNDDDLLILQS 434
Score = 96.9 bits (242), Expect = 5e-23
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 34/163 (20%)
Query: 40 THNDIKEYQAHGSKVHSVAWSCDGRRL--ASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
N E+Q + ++W +GRRL D + D G+ EV GH+
Sbjct: 105 EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS-GNSLGEV--SGHSQ 161
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157
++ + P T D +V + K
Sbjct: 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK-----------------------FSAS 198
Query: 158 EVVYRGHTGSVDQLCWHATNPD---LLSTASGDKTVRIWDART 197
+ + V + + +PD + T D+ + +D ++
Sbjct: 199 DRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFDGKS 238
Score = 93.8 bits (234), Expect = 5e-22
Identities = 26/195 (13%), Positives = 57/195 (29%), Gaps = 42/195 (21%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDGR-RLASG 69
E + L + D++ + + N + E H ++++ R +
Sbjct: 125 DFEGRRLCVVGEGR-----DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTV 179
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD---LLSTASGDKTVRIWDA 126
D SV + + + V + + +PD + T D+ + +D
Sbjct: 180 GDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFDG 236
Query: 127 RTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTA 184
++ + + V + + D +T
Sbjct: 237 KSGEFLKYI--------------------------EDDQEPVQGGIFALSWLDSQKFATV 270
Query: 185 SGDKTVRIWDARTQK 199
D T+R+WD T K
Sbjct: 271 GADATIRVWDVTTSK 285
Score = 88.8 bits (221), Expect = 3e-20
Identities = 35/208 (16%), Positives = 70/208 (33%), Gaps = 34/208 (16%)
Query: 32 DDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89
D + + +D +K H + ++ + L SGS+D + + +
Sbjct: 318 DGTLNFYELGHDEVLKTISGHNKGITALTVN----PLISGSYDGRIMEW--------SSS 365
Query: 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQI---------MLASG 138
+++ H+ + L + S+ S D T+++ + SQ A
Sbjct: 366 SMHQDHSNLIVSLDN--SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 423
Query: 139 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDAR 196
+ D + I GD+ K V GS L N L + + ++ D
Sbjct: 424 TNDDDLLILQ-SFTGDIIKSVRL-NSPGSAVSLSQ---NYVAVGLEEGNTIQVFKLSDLE 478
Query: 197 TQKSQIIATKGENINITWAPNGNTIAVG 224
+ + I+ +P+ IA G
Sbjct: 479 VSFDLKTPLRAKPSYISISPSETYIAAG 506
Score = 84.6 bits (210), Expect = 8e-19
Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 49/193 (25%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
+ L G+ + K+ D D+K +K ++ S +A+G
Sbjct: 457 NYVAVGLEEGNTIQVF-KLSD----LEVSFDLKT--PLRAKPSYISISPSETYIAAGDVM 509
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH---------ATNPDLLSTASGDKTVRI 123
+ ++ D + K + T ++ + W DL++T S D + I
Sbjct: 510 GKILLY--DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 567
Query: 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LL 181
+ + I H V+ L W L+
Sbjct: 568 YSVKRPMKII-------------------------KALNAHKDGVNNLLWE---TPSTLV 599
Query: 182 STASGDKTVRIWD 194
S + D ++ W+
Sbjct: 600 S-SGADACIKRWN 611
Score = 83.1 bits (206), Expect = 3e-18
Identities = 33/206 (16%), Positives = 63/206 (30%), Gaps = 39/206 (18%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
GS+ + + DG + D + I GD+ K V GS L N
Sbjct: 405 FGSQPKVASANNDGFTAVLTN-DDDLLILQ-SFTGDIIKSVRL-NSPGSAVSLSQ---NY 458
Query: 110 D--LLSTASGDKTVRIWDARTQKSQI-----------------MLASGSFDKSVAIFALD 150
L + + ++ D +A+G + ++ D
Sbjct: 459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY--D 516
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWH---------ATNPDLLSTASGDKTVRIWDARTQKSQ 201
+ K + T ++ + W DL++T S D + I+ +
Sbjct: 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 576
Query: 202 IIATKG--ENIN-ITWAPNGNTIAVG 224
I A + +N + W ++ G
Sbjct: 577 IKALNAHKDGVNNLLWETPSTLVSSG 602
Score = 74.2 bits (183), Expect = 2e-15
Identities = 22/184 (11%), Positives = 50/184 (27%), Gaps = 31/184 (16%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGS-VDQLCWH- 105
+ +++ +A KS + LD V + GH S V + +
Sbjct: 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 74
Query: 106 ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 165
L + V +W K + + ++ E ++
Sbjct: 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSV----------------EVNVKSE--FQVLA 116
Query: 166 GSVDQLCWHATNPD--LLSTASG--DKTVRIWDARTQKS-QIIATKGENIN-ITWAPNGN 219
G + + W + + L D + S ++ + IN +
Sbjct: 117 GPISDISW---DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRP 173
Query: 220 TIAV 223
++
Sbjct: 174 MRSM 177
Score = 38.4 bits (90), Expect = 0.002
Identities = 8/70 (11%), Positives = 14/70 (20%), Gaps = 7/70 (10%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KGENINITWA----- 215
L + T + VR D K + G ++
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 74
Query: 216 -PNGNTIAVG 224
+ G
Sbjct: 75 IKGSQYLCSG 84
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 95.7 bits (239), Expect = 2e-23
Identities = 55/208 (26%), Positives = 80/208 (38%), Gaps = 42/208 (20%)
Query: 50 HGSKVHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHA 106
H V S+A S L S S DK++ + L V +GH+ V
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL-- 73
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQI-------------------MLASGSFDKSVA 145
D +AS DKT+R+WD T ++ M+ SGS DK++
Sbjct: 74 -TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCW---HATNPD--LLSTASGDKTVRIWDARTQKS 200
++ KG GH V Q+ + D + +A DK V+ W+
Sbjct: 133 VW--TIKGQCLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-- 186
Query: 201 QIIAT-KG--ENIN-ITWAPNGNTIAVG 224
QI A G NIN +T +P+G IA
Sbjct: 187 QIEADFIGHNSNINTLTASPDGTLIASA 214
Score = 94.1 bits (235), Expect = 1e-22
Identities = 35/183 (19%), Positives = 67/183 (36%), Gaps = 41/183 (22%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW---HA 106
H S V SV + SGS DK++ ++ KG GH V Q+
Sbjct: 106 HKSDVMSVDIDKKASMIISGSRDKTIKVW--TIKGQCLA--TLLGHNDWVSQVRVVPNEK 161
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+ D + +A DK V+ W+ + + GH
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADF--------------------------IGH 195
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNTI 221
+++ L +PD L+++A D + +W+ +K+ + + + + ++PN +
Sbjct: 196 NSNINTLTA---SPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWL 252
Query: 222 AVG 224
A
Sbjct: 253 AAA 255
Score = 80.3 bits (199), Expect = 8e-18
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 37/160 (23%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN--KEVVYRGHTGSVDQ 101
++ H S ++++ S DG +AS D + ++ +L K + V
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW------NLAAKKAMYTLSAQDEVFS 242
Query: 102 LCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV 159
L + P+ L+ A+ ++++ Q L
Sbjct: 243 LAFS---PNRYWLAAAT-ATGIKVFSLDPQYLVDDLRP------------------EFAG 280
Query: 160 VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+ L W D L D +R+W T
Sbjct: 281 YSKAAEPHAVSLAWS---ADGQTLFAGYTDNVIRVWQVMT 317
Score = 67.5 bits (166), Expect = 3e-13
Identities = 32/136 (23%), Positives = 48/136 (35%), Gaps = 32/136 (23%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
GH G V L A P+LL +AS DKT+ W + + SF
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF------------ 61
Query: 153 GDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG-- 207
+GH+ V D +AS DKT+R+WD T ++ G
Sbjct: 62 ---------KGHSHIVQDCTL---TADGAYALSASWDKTLRLWDVATGET--YQRFVGHK 107
Query: 208 ENIN-ITWAPNGNTIA 222
++ + + I
Sbjct: 108 SDVMSVDIDKKASMII 123
Score = 46.7 bits (112), Expect = 2e-06
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIIAT-KG--ENIN-ITW 214
GH G V L A P+LL +AS DKT+ W + + KG + T
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTL 73
Query: 215 APNGNTIAVG 224
+G
Sbjct: 74 TADGAYALSA 83
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 95.8 bits (239), Expect = 4e-23
Identities = 41/242 (16%), Positives = 76/242 (31%), Gaps = 52/242 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN--KEVVYRGHTGSVDQLCWHAT 107
H V V WS DG ++ + S DK+ ++ DL+ + + H V + W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMW------DLSSNQAIQIAQHDAPVKTIHWI-K 137
Query: 108 NPD--LLSTASGDKTVRIWDARTQKSQI----------------MLASGSFDKSVAIFAL 149
P+ + T S DKT++ WD R+ + M + ++ + ++ L
Sbjct: 138 APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQL 197
Query: 150 DKKGDLNKEVVYRGHTGSVDQLCW---HATNPDLLSTASGDKTVRIW--DARTQKSQIIA 204
+ + + + + P + S + V I +
Sbjct: 198 ENQPSEFRRIE-SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256
Query: 205 TKGENIN---------------ITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSR 249
K N I + P T+A + +F D R + TS
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA----RTKLKTSE 312
Query: 250 GH 251
Sbjct: 313 QL 314
Score = 95.8 bits (239), Expect = 4e-23
Identities = 35/234 (14%), Positives = 67/234 (28%), Gaps = 49/234 (20%)
Query: 54 VHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEV-VYRGHTGSVDQLCW--HATNP 109
+ + G + S + D + K++ V S+ L +
Sbjct: 5 GTTSGFGTSGTSMFGSATTDNHNPM----------KDIEVTSSPDDSIGCLSFSPPTLPG 54
Query: 110 DLLSTASGDKTVRIWDARTQKSQIM---------------------LASGSFDKSVAIFA 148
+ L S VR W+ + I + + S DK+ ++
Sbjct: 55 NFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW- 113
Query: 149 LDKKGDLN--KEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIA 204
DL+ + + H V + W P+ + T S DKT++ WD R+ ++
Sbjct: 114 -----DLSSNQAIQIAQHDAPVKTIHWI-KAPNYSCVMTGSWDKTLKFWDTRSSNPMMVL 167
Query: 205 TKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258
E V E + + R + R +
Sbjct: 168 QLPERC-YCADVIYPMAVVATAERGLIVYQLENQPSEFRRIE--SPLKHQHRCV 218
Score = 82.7 bits (205), Expect = 2e-18
Identities = 31/220 (14%), Positives = 65/220 (29%), Gaps = 53/220 (24%)
Query: 48 QAHGSKVHSVAW--SCDGRRLASGSFDKSVAIFALDKKGDLN--KEV-VYRGHTGSVDQL 102
H + V ++ W + + + +GS+DK++ + D + V +
Sbjct: 124 AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW------DTRSSNPMMVLQLPERCY--- 174
Query: 103 CWHATNPDLLSTASGDKTVRIWDART-------------------------QKSQIMLAS 137
+ A+ ++ + ++ Q A
Sbjct: 175 -CADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233
Query: 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW----HATN-----PD--LLSTASG 186
GS + VAI ++ ++ H + +A N P L+T
Sbjct: 234 GSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS 293
Query: 187 DKTVRIWDARTQKSQIIATKGEN-IN-ITWAPNGNTIAVG 224
D WD + + + + I+ + NGN A
Sbjct: 294 DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYA 333
Score = 68.8 bits (169), Expect = 1e-13
Identities = 22/169 (13%), Positives = 42/169 (24%), Gaps = 46/169 (27%)
Query: 50 HGSKVHSVAWSCDGR----RLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW- 104
+ VA D + A GS + VAI ++ ++ H +
Sbjct: 211 LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAP 270
Query: 105 ---HATN-----PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGD 154
+A N P L+T D WD +
Sbjct: 271 QDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL---------------------- 308
Query: 155 LNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQ 201
+ C+ N + + + AS + + + +
Sbjct: 309 ----KTSEQLDQPISACCF---NHNGNIFAYASSYDWSKGHEFYNPQKK 350
Score = 61.1 bits (149), Expect = 5e-11
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 10/90 (11%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
V+ +A+ LA+ D + + D + L + C+ N
Sbjct: 272 DIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT---SEQLDQPISACCF---NH 325
Query: 110 D--LLSTASGDKTVRIWDART--QKSQIML 135
+ + + AS + + +K+ I L
Sbjct: 326 NGNIFAYASSYDWSKGHEFYNPQKKNYIFL 355
Score = 44.2 bits (105), Expect = 2e-05
Identities = 7/65 (10%), Positives = 17/65 (26%), Gaps = 9/65 (13%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
P + L + D + +K + + + ++ +G A S
Sbjct: 282 HPVHGTLATVGS-------DGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYAS 334
Query: 71 FDKSV 75
Sbjct: 335 SYDWS 339
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 96.7 bits (241), Expect = 5e-23
Identities = 43/224 (19%), Positives = 83/224 (37%), Gaps = 44/224 (19%)
Query: 35 VKHFNTHNDIKEYQAHGSKVHSVAWSCD-GRRLASGSFDKSVAIFALDKKGDLNKEVVY- 92
+AH V ++A D + S S DKS+ ++ L K
Sbjct: 366 TNAAAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRR 425
Query: 93 -RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQ----------------- 132
GH+ V+ + D + S D +R+WD S
Sbjct: 426 LTGHSHFVEDVVLS---SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482
Query: 133 --IMLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHATNPD----LLSTA 184
+ S S D+++ ++ + G+ + GH V + + +P+ + +A
Sbjct: 483 DNRQIVSASRDRTIKLW--NTLGECKYTISEGGEGHRDWVSCVRF---SPNTLQPTIVSA 537
Query: 185 SGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
S DKTV++W+ ++ +T G ++ + +P+G+ A G
Sbjct: 538 SWDKTVKVWNLSNC--KLRSTLAGHTGYVSTVAVSPDGSLCASG 579
Score = 94.0 bits (234), Expect = 5e-22
Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 43/184 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHAT 107
H V SVA+S D R++ S S D+++ ++ + G+ + GH V + +
Sbjct: 471 HTKDVLSVAFSLDNRQIVSASRDRTIKLW--NTLGECKYTISEGGEGHRDWVSCVRF--- 525
Query: 108 NPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+P+ + +AS DKTV++W+ K + L G
Sbjct: 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL--------------------------AG 559
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNT 220
HTG V + +PD L ++ D V +WD K I+ + ++PN
Sbjct: 560 HTGYVSTVAV---SPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYW 616
Query: 221 IAVG 224
+
Sbjct: 617 LCAA 620
Score = 81.7 bits (202), Expect = 1e-17
Identities = 35/155 (22%), Positives = 59/155 (38%), Gaps = 28/155 (18%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK-EVVY--RGHTGSVDQLCWHA 106
H V +VA S DG ASG D V ++ DL + + +Y ++ + LC+
Sbjct: 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLW------DLAEGKKLYSLEANS-VIHALCFS- 611
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P+ L A+ + ++IWD + KS + A +K D + +
Sbjct: 612 --PNRYWLCAAT-EHGIKIWDLES-KSIVEDLKVDLK------AEAEKADNSGPAATKRK 661
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
L W + D L + D +R+W
Sbjct: 662 VIYCTSLNW---SADGSTLFSGYTDGVIRVWGIGR 693
Score = 71.6 bits (176), Expect = 2e-14
Identities = 27/159 (16%), Positives = 46/159 (28%), Gaps = 29/159 (18%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
I + A V + + R + + A R HT V +
Sbjct: 333 IPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGT---MRAHTDMVTAIA 389
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
N D++ +AS DK++ +W +A G
Sbjct: 390 TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL---------------------TG 428
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS 200
H+ V+ + D + S D +R+WD S
Sbjct: 429 HSHFVEDVVLS---SDGQFALSGSWDGELRLWDLAAGVS 464
Score = 61.2 bits (149), Expect = 7e-11
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 32/136 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP+ L SG + D V + +A+ +H++ +S + L + +
Sbjct: 570 SPDGSLCASGGK-------DGVVLLWDLAEGKKLYSLEANSV-IHALCFSPNRYWLCAAT 621
Query: 71 FDKSVAIF----------------ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LL 112
+ + I+ A +K D + + L W + D L
Sbjct: 622 -EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW---SADGSTL 677
Query: 113 STASGDKTVRIWDART 128
+ D +R+W
Sbjct: 678 FSGYTDGVIRVWGIGR 693
Score = 57.8 bits (140), Expect = 1e-09
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 23/159 (14%)
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSVDQLCWHATNPDLLSTASGDKTV 121
+ + S +K +A + L E + + + + +L
Sbjct: 263 SAGINAASPNKELAK-EFLENYLLTDEGLEAVNKDKPLGAVALKSYEEELAK--DPRIAA 319
Query: 122 RIWDART----QKSQIMLASGSFDKSVAIFALDKKGD---------------LNKEVVYR 162
+ +A+ M A ++ I A + L + R
Sbjct: 320 TMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALAAAQTNAAAGLVLKGTMR 379
Query: 163 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ 201
HT V + N D++ +AS DK++ +W
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA 418
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 95.8 bits (239), Expect = 6e-23
Identities = 22/180 (12%), Positives = 50/180 (27%), Gaps = 30/180 (16%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
++V +AWS DG + +G + + + +K G L V H + + W N
Sbjct: 107 TTNQVTCLAWSHDGNSIVTGVENGELRL--WNKTGALLN--VLNFHRAPIVSVKW---NK 159
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D + + + +W+ + + G + G
Sbjct: 160 DGTHIISMDVENVTILWNVISGTVMQHFE-----------LKETGGSSINAENHSGDGSL 208
Query: 168 VDQLCWHATNPDL-LSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
+ W D + ++ + G I+ + + +
Sbjct: 209 GVDVEWV---DDDKFVIPGPKGAIFVYQITEKTP--TGKLIGHHGPISVLEFNDTNKLLL 263
Score = 91.6 bits (228), Expect = 2e-21
Identities = 29/221 (13%), Positives = 60/221 (27%), Gaps = 53/221 (23%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
+ K + G + + H + + ++ + L S S
Sbjct: 215 VDDDKFVIPGP--------KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSAS 266
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
D ++ I+ G+ + GH+ S+ W D ++S S D +VR+W +
Sbjct: 267 DDGTLRIWHG-GNGNSQN--CFYGHSQSIVSASWV---GDDKVIS-CSMDGSVRLWSLKQ 319
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
+ + D + A
Sbjct: 320 NTLLALS--------------------------IVDGVPIFAGRIS---QDGQKYAVAFM 350
Query: 187 DKTVRIWDARTQKSQIIATKG---ENINITWAPNGNTIAVG 224
D V ++D + S+ + G +N P +
Sbjct: 351 DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSS 391
Score = 79.2 bits (196), Expect = 4e-17
Identities = 19/179 (10%), Positives = 45/179 (25%), Gaps = 28/179 (15%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
G+ D S D + K + ++ W+ +
Sbjct: 9 DGASTVERETQEDDTNSIDSSDDLDGFV----------KILKEIVKLDNIVSSTWNPLDE 58
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+L+ + R+ + + T V
Sbjct: 59 SILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASS------GKTTNQVT 112
Query: 170 QLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIA 222
L W + D + T + +R+W+ ++ + +++ W +G I
Sbjct: 113 CLAW---SHDGNSIVTGVENGELRLWNK---TGALLNVLNFHRAPIVSVKWNKDGTHII 165
Score = 75.4 bits (186), Expect = 8e-16
Identities = 36/198 (18%), Positives = 63/198 (31%), Gaps = 53/198 (26%)
Query: 44 IKEYQAHGSKVHSVAWSCDGR-----------RLASGSFDKSVAIFALDKKGDLNKEVVY 92
+ + GS +++ S DG + ++ ++ + +
Sbjct: 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQI-TEKTPTG--KL 243
Query: 93 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
GH G + L + N LL +AS D T+RIW S F
Sbjct: 244 IGHHGPISVLEF---NDTNKLLLSASDDGTLRIWHGGN------------GNSQNCF--- 285
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGE 208
GH+ S+ W D ++S S D +VR+W + ++
Sbjct: 286 -----------YGHSQSIVSASWV---GDDKVIS-CSMDGSVRLWSLKQNTLLALSIVDG 330
Query: 209 N-IN-ITWAPNGNTIAVG 224
I + +G AV
Sbjct: 331 VPIFAGRISQDGQKYAVA 348
Score = 69.6 bits (171), Expect = 8e-14
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 3/88 (3%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ G + + S DG++ A D V ++ L K ++ G+ +
Sbjct: 323 LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSR--SLYGNRDGILNPL 380
Query: 104 WHATNPDLLSTASGDKTVRI-WDARTQK 130
S+ D + W+ K
Sbjct: 381 PIPLYASYQSSQDNDYIFDLSWNCAGNK 408
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 95.7 bits (239), Expect = 6e-23
Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 54/222 (24%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
P + ++ S S+ D +K + T + + + H V +++ G+ LAS S
Sbjct: 117 HPVFSVMVSASE-------DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
D ++ ++ + + + GH +V + P+ + +AS DKT+++W+ +T
Sbjct: 170 ADMTIKLWDF-QGFECIR--TMHGHDHNVSSVSI---MPNGDHIVSASRDKTIKMWEVQT 223
Query: 129 QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 186
GH V + N D L+++ S
Sbjct: 224 GYCVKTF--------------------------TGHREWVRMVRP---NQDGTLIASCSN 254
Query: 187 DKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIAVG 224
D+TVR+W T+ + A + I+WAP + ++
Sbjct: 255 DQTVRVWVVATK--ECKAELREHRHVVECISWAPESSYSSIS 294
Score = 93.4 bits (233), Expect = 5e-22
Identities = 37/187 (19%), Positives = 74/187 (39%), Gaps = 21/187 (11%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+K + H V V + DG +AS S D++V ++ + + E R H V+ +
Sbjct: 227 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-ATKECKAE--LREHRHVVECIS 283
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
W P+ ++ + T + L SGS DK++ ++ + G G
Sbjct: 284 WA---PESSYSSISEATGSETKKSGKPGPF-LLSGSRDKTIKMWDV-STGMCLM--TLVG 336
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPN 217
H V + +H + + + DKT+R+WD + + + + T + + +
Sbjct: 337 HDNWVRGVLFH---SGGKFILSCADDKTLRVWDYKNK--RCMKTLNAHEHFVTSLDFHKT 391
Query: 218 GNTIAVG 224
+ G
Sbjct: 392 APYVVTG 398
Score = 92.7 bits (231), Expect = 8e-22
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 45/181 (24%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H S V V + + S S D ++ ++ + GD E +GHT SV + + +
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-TGDF--ERTLKGHTDSVQDISF---DH 160
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
LL++ S D T+++WD + + + GH +
Sbjct: 161 SGKLLASCSADMTIKLWDFQGFECIRTM--------------------------HGHDHN 194
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTI 221
V + P+ + +AS DKT+++W+ +T + T G E + + +G I
Sbjct: 195 VSSVSI---MPNGDHIVSASRDKTIKMWEVQTGYC--VKTFTGHREWVRMVRPNQDGTLI 249
Query: 222 A 222
A
Sbjct: 250 A 250
Score = 92.3 bits (230), Expect = 9e-22
Identities = 46/221 (20%), Positives = 80/221 (36%), Gaps = 36/221 (16%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVK--HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
KLL S S D +K F I+ H V SV+ +G + S S
Sbjct: 159 DHSGKLLASCSA-------DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 128
DK++ ++ + + G K + GH V + N D L+++ S D+TVR+W T
Sbjct: 212 RDKTIKMWEV-QTGYCVK--TFTGHREWVRMVRP---NQDGTLIASCSNDQTVRVWVVAT 265
Query: 129 QKSQIMLAS-GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTAS 185
++ + L + ++ +A + + L + S
Sbjct: 266 KECKAELREHRHVVECIS-WAPESS---------YSSISEATGSETKKSGKPGPFLLSGS 315
Query: 186 GDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIA 222
DKT+++WD T + T + + G I
Sbjct: 316 RDKTIKMWDVST--GMCLMTLVGHDNWVRGVLFHSGGKFIL 354
Score = 56.5 bits (137), Expect = 2e-09
Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 38/119 (31%)
Query: 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
+ + W R + + GH V ++
Sbjct: 82 GGPLGQKRDPKEWIPRPPEKYAL---------------------------SGHRSPVTRV 114
Query: 172 CWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIAVG 224
+H P ++ +AS D T+++WD T T KG +++ I++ +G +A
Sbjct: 115 IFH---PVFSVMVSASEDATIKVWDYET--GDFERTLKGHTDSVQDISFDHSGKLLASC 168
Score = 45.3 bits (108), Expect = 9e-06
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSV 75
AH V S+ + + +GS D++V
Sbjct: 377 NAHEHFVTSLDFHKTAPYVVTGSVDQTV 404
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 95.0 bits (237), Expect = 1e-22
Identities = 38/187 (20%), Positives = 67/187 (35%), Gaps = 23/187 (12%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ + H V ++ ++ G L SGS D++V ++ + KKG V+ GH +V L
Sbjct: 155 LLQLSGHDGGVWALKYA-HGGILVSGSTDRTVRVWDI-KKGCCTH--VFEGHNSTVRCLD 210
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ + T S D T+ +W + S V ++ V
Sbjct: 211 I-VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF-HTPEENPYFVG--VL 266
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWA 215
RGH SV + ++ + S D T+ +WD K + G + I +
Sbjct: 267 RGHMASV-----RTVSGHGNIVVSGSYDNTLIVWDVAQMKC--LYILSGHTDRIYSTIYD 319
Query: 216 PNGNTIA 222
Sbjct: 320 HERKRCI 326
Score = 87.3 bits (217), Expect = 6e-20
Identities = 36/191 (18%), Positives = 72/191 (37%), Gaps = 44/191 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTGSVDQLCWHAT 107
H +++S + + +R S S D ++ I+ L+ N E++Y +GHT V L
Sbjct: 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLE-----NGELMYTLQGHTALVGLLRL--- 360
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ L +A+ D ++R WDA + HT
Sbjct: 361 SDKFLVSAAADGSIRGWDANDYSRKFSY---------------------------HHTNL 393
Query: 168 VDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIIATKGENINITW--APNGNTIAVG 224
++ SG + I++ R+ K + A ++ + W G T+
Sbjct: 394 SAITTFY---VSDNILVSGSENQFNIYNLRSGK-LVHANILKDADQIWSVNFKGKTLVAA 449
Query: 225 NKEDLVTFIDV 235
++D +F+++
Sbjct: 450 VEKDGQSFLEI 460
Score = 86.1 bits (214), Expect = 2e-19
Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 40/176 (22%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H + V +V S G + SGS+D ++ ++ + + + GHT + + +
Sbjct: 269 HMASVRTV--SGHGNIVVSGSYDNTLIVWDV-AQMKCLY--ILSGHTDRIYSTIY---DH 320
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ +AS D T+RIWD + L +GHT
Sbjct: 321 ERKRCISASMDTTIRIWDLENGELMYTL--------------------------QGHTAL 354
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT-WAPNGNTIA 222
V L + L +A+ D ++R WDA + IT + + N +
Sbjct: 355 VGLLRL---SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 407
Score = 81.1 bits (201), Expect = 9e-18
Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 44/194 (22%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
+F + S+ + D RL+ + + K RGH
Sbjct: 64 NFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFLENIFILKNWYNPKFVPQRT--TLRGHM 121
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGD 154
SV + + T + DK +R++D+ +K + L
Sbjct: 122 TSV----ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQL------------------- 158
Query: 155 LNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KG-----E 208
GH G V L + + +L + S D+TVR+WD + +G
Sbjct: 159 -------SGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKK--GCCTHVFEGHNSTVR 207
Query: 209 NINITWAPNGNTIA 222
++I N I
Sbjct: 208 CLDIVEYKNIKYIV 221
Score = 76.1 bits (188), Expect = 6e-16
Identities = 30/174 (17%), Positives = 53/174 (30%), Gaps = 60/174 (34%)
Query: 50 HGSKVH--SVAWSCDGRRLASGSFDKSVAI--------------------FALDKKGDLN 87
H S V + + + + +GS D ++ + + +
Sbjct: 202 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPY 261
Query: 88 KEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVA 145
V RGH SV + ++ + S D T+ +WD K +L
Sbjct: 262 FVGVLRGHMASV-----RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL---------- 306
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
GHT + + + + +AS D T+RIWD
Sbjct: 307 ----------------SGHTDRIYSTIY---DHERKRCISASMDTTIRIWDLEN 341
Score = 49.9 bits (120), Expect = 3e-07
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 9/80 (11%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H + + L SGS + I+ L + G L + + + +
Sbjct: 390 HTNLSAITTFYVSDNILVSGS-ENQFNIYNL-RSGKLVHANI-LKDADQIWSVNF---KG 443
Query: 110 DLLSTASGD---KTVRIWDA 126
L A + I D
Sbjct: 444 KTLVAAVEKDGQSFLEILDF 463
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 93.6 bits (233), Expect = 2e-22
Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 18/154 (11%)
Query: 50 HGSKVHSVAWSCDG---RRLASGSFDKSVAIFALDKKGDLNKE--VVYRGHTGSVDQLCW 104
+ V S+ + +L + S + +F + + V + H +V Q+
Sbjct: 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRH 267
Query: 105 HATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
N +L TA G + +W + S + VA L + V
Sbjct: 268 LPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA-----GSVSLLQNV--TLS 320
Query: 165 TGSVDQLCWHATNPD---LLSTASGDKTVRIWDA 195
T + L W PD L +S D+TVR+
Sbjct: 321 TQPISSLDWS---PDKRGLCVCSSFDQTVRVLIV 351
Score = 91.3 bits (227), Expect = 1e-21
Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 48/217 (22%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY--RGHTG---SVDQLCWHATN 108
A S R LA+G F ++ I+ L+ + VY +GH ++D +
Sbjct: 71 GTFGATSLQQRYLATGDFGGNLHIWNLEA----PEMPVYSVKGHKEIINAIDGIGGLGIG 126
Query: 109 PD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+ T S D TV++WD R + + +G
Sbjct: 127 EGAPEIVTGSRDGTVKVWDPRQKDDPVANME----------------------PVQGENK 164
Query: 167 SVDQLCW-----HATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNG 218
CW +A N + ++ + ++++D R + + + +
Sbjct: 165 RD---CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKD 221
Query: 219 ---NTIAVGNKEDLVTFIDVVKSLPPRERTL-TSRGH 251
N + + E D+ P + + + H
Sbjct: 222 ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAH 258
Score = 90.9 bits (226), Expect = 2e-21
Identities = 29/195 (14%), Positives = 58/195 (29%), Gaps = 48/195 (24%)
Query: 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA--TNP 109
+ A++ + R + +G + + +F D + V L + +
Sbjct: 169 TVAFGNAYNQEERVVCAGYDNGDIKLF--DLRN--MALRWETNIKNGVCSLEFDRKDISM 224
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+ L S + ++D RTQ AS S + H +V
Sbjct: 225 NKLVATSLEGKFHVFDMRTQHPTKGFASVSE---------------------KAHKSTVW 263
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----------IATKGENIN-------- 211
Q+ N +L TA G + +W + +A +
Sbjct: 264 QVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQP 323
Query: 212 ---ITWAPNGNTIAV 223
+ W+P+ + V
Sbjct: 324 ISSLDWSPDKRGLCV 338
Score = 89.3 bits (222), Expect = 6e-21
Identities = 28/199 (14%), Positives = 56/199 (28%), Gaps = 49/199 (24%)
Query: 48 QAHGSKVHSVAWSCDGRRLAS----GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ V W + + + ++ + GDL K + +
Sbjct: 15 KGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-HGDL-KLLREIEKAKPIKCGT 72
Query: 104 WHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVY 161
+ AT+ L+T + IW+ + +
Sbjct: 73 FGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY-------------------------SV 107
Query: 162 RGHTG---SVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK---SQIIATKGENINIT 213
+GH ++D + + T S D TV++WD R + + + +GEN
Sbjct: 108 KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167
Query: 214 WA--------PNGNTIAVG 224
W + G
Sbjct: 168 WTVAFGNAYNQEERVVCAG 186
Score = 44.3 bits (105), Expect = 2e-05
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 15/77 (19%)
Query: 160 VYRGHTGSVDQLCWHATNPD------LLSTASGDKTVRIWDARTQKSQIIATKGENINIT 213
+ +G +V W P + + A G +++++ + +++ + I
Sbjct: 13 IQKGFNYTVFDCKW---VPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIK 69
Query: 214 ------WAPNGNTIAVG 224
+ +A G
Sbjct: 70 CGTFGATSLQQRYLATG 86
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 93.7 bits (233), Expect = 3e-22
Identities = 33/213 (15%), Positives = 71/213 (33%), Gaps = 40/213 (18%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK---KGDLNKEVVYRGHTGSVD 100
++ SV S G +A+G + +V I L + + ++ S+
Sbjct: 179 VESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 237
Query: 101 QLCWHATNPD--LLSTASGDKT---VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDL 155
+ + P LL+ A + + +++ + L+ + ++
Sbjct: 238 SVKFS---PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASL--------- 285
Query: 156 NKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-------- 205
H+ V L + N L +A D +R WD +T + I T
Sbjct: 286 ----GEFAHSSWVMSLSF---NDSGETLCSAGWDGKLRFWDVKT--KERITTLNMHCDDI 336
Query: 206 KGENINITWAPNGNTIAVGNKEDLVTFIDVVKS 238
+ E + +G+++A D+ +S
Sbjct: 337 EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRS 369
Score = 80.6 bits (199), Expect = 1e-17
Identities = 23/206 (11%), Positives = 60/206 (29%), Gaps = 35/206 (16%)
Query: 35 VKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRG 94
+ H + I+ V + ++S D D++ + +K DL + +
Sbjct: 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI--FEKLDLLDSDM-KK 121
Query: 95 HTGSVDQLCWHATNPDL-------LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIF 147
H+ L T IW + + ++ ++ +
Sbjct: 122 HSFWA-----LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQ 176
Query: 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIATK 206
+ + + L++T + TV+I + T +
Sbjct: 177 GTVES--------PMTPSQFATSVDIS---ERGLIATGFNNGTVQISELSTLRPLYNFES 225
Query: 207 GENIN--------ITWAPNGNTIAVG 224
++ + ++P G+ +A+
Sbjct: 226 QHSMINNSNSIRSVKFSPQGSLLAIA 251
Score = 77.5 bits (191), Expect = 2e-16
Identities = 31/179 (17%), Positives = 53/179 (29%), Gaps = 42/179 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFAL-------------DKKGDLNKEVVYRGHT 96
+ + + SV +S G LA S L + H+
Sbjct: 232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS 291
Query: 97 GSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKS-----------QIMLASGSFD-- 141
V L + N L +A D +R WD +T++ +I + D
Sbjct: 292 SWVMSLSF---NDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEH 348
Query: 142 -KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 199
S+A + L K R G+ + L D+++R + K
Sbjct: 349 GDSLAEPGVFDVKFLKKGW--RSGMGADLN--------ESLCCVCLDRSIRWFREAGGK 397
Score = 71.3 bits (175), Expect = 2e-14
Identities = 23/183 (12%), Positives = 53/183 (28%), Gaps = 26/183 (14%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL-CWHA 106
+AH + + SV+ S S D + ++ D K N+ + ++ V + H
Sbjct: 13 KAHDADIFSVSACNSF--TVSCSGDGYLKVW--DNKLLDNENPKDKSYSHFVHKSGLHHV 68
Query: 107 TNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 166
+ + + + + + D++ + +K DL + + H+
Sbjct: 69 DVLQAIERDAFELCLVATTSFSGDLLF-YRITREDETKKVI--FEKLDLLDSDM-KKHSF 124
Query: 167 SVDQLCWHATNPDL-------LSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGN 219
L T IW + ++ + W+P
Sbjct: 125 WA-----LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE-----SNSLTLNWSPTLE 174
Query: 220 TIA 222
Sbjct: 175 LQG 177
Score = 65.5 bits (160), Expect = 2e-12
Identities = 13/145 (8%), Positives = 38/145 (26%), Gaps = 22/145 (15%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASG--SFDKSVAIFA 148
+ H + + + SGD +++WD + ++ F +
Sbjct: 11 AGKAHDADIFSVSA---CNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 67
Query: 149 LDKKGDLNKEVVYRGHTGSVDQ--LCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIA 204
+D + + + + + + D D+T ++ +
Sbjct: 68 VDVLQAI--------ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM 119
Query: 205 TKGENINITWAP-----NGNTIAVG 224
K + W + +
Sbjct: 120 KKHSFWALKWGASNDRLLSHRLVAT 144
Score = 64.8 bits (158), Expect = 3e-12
Identities = 19/120 (15%), Positives = 37/120 (30%), Gaps = 10/120 (8%)
Query: 36 KHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH 95
++ AH S V S++++ G L S +D + + + K + H
Sbjct: 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT---LNMH 332
Query: 96 TGSVDQLCWH-ATNPD---LLSTASGDKT--VRIWDART-QKSQIMLASGSFDKSVAIFA 148
++ A + L D + W + L D+S+ F
Sbjct: 333 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 93.5 bits (233), Expect = 4e-22
Identities = 18/188 (9%), Positives = 57/188 (30%), Gaps = 32/188 (17%)
Query: 38 FNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
D + ++ SK +++ + G+ + +G + + + K + + T
Sbjct: 234 LFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQ--LPSKFTC 291
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157
S + L N + + + + WD R+ + +
Sbjct: 292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG----------------------- 328
Query: 158 EVVYRGHTGSVDQLCWHATNPD-LLSTASGDKTVRIWDARTQKSQIIATKGENIN--ITW 214
++ + + L ++ D ++++ +S+ A + E ++
Sbjct: 329 -EFLINEGTPINNVYFA---AGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSN 384
Query: 215 APNGNTIA 222
+
Sbjct: 385 DDAVSQFC 392
Score = 92.3 bits (230), Expect = 1e-21
Identities = 28/190 (14%), Positives = 53/190 (27%), Gaps = 47/190 (24%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHN-DIKEYQAHGSKVHSVAWSCDGRRLASGSF 71
L D + FNT D + RR G+
Sbjct: 65 EKVGSHLYKARL-------DGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTT 117
Query: 72 DKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQ 129
+ + + + + + H + +L + P L ++S D ++IW +
Sbjct: 118 EGDIKVLDS-NFNLQRE--IDQAHVSEITKLKF---FPSGEALISSSQDMQLKIWSVKDG 171
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGD 187
+ L GH +V + + +AS D
Sbjct: 172 SNPRTL--------------------------IGHRATVTDIAI---IDRGRNVLSASLD 202
Query: 188 KTVRIWDART 197
T+R+W+ T
Sbjct: 203 GTIRLWECGT 212
Score = 88.1 bits (219), Expect = 3e-20
Identities = 13/154 (8%), Positives = 33/154 (21%), Gaps = 40/154 (25%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+ G L D +F +
Sbjct: 55 GVDAGKGNTFEKVGSHLYKARLDGHDFLFNTIIR----DGSKMLKRADYTAVDTA---KL 107
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ + +++ D+ + + + H
Sbjct: 108 QMRRFILGTTEGDIKVLDSNFNLQREID--------------------------QAHVSE 141
Query: 168 VDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
+ +L + P L ++S D ++IW +
Sbjct: 142 ITKLKF---FPSGEALISSSQDMQLKIWSVKDGS 172
Score = 87.7 bits (218), Expect = 5e-20
Identities = 21/165 (12%), Positives = 50/165 (30%), Gaps = 11/165 (6%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ H + V +A GR + S S D ++ ++ ++ V+ +
Sbjct: 174 PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIA 233
Query: 104 WHATNPDLLSTASGDKTVRIW---DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV 160
L S K + + + +G + + + K + +
Sbjct: 234 LFVGTDRQLHEISTSKKNNLEFGTYGKY------VIAGHVSGVITVHNVFSKEQTIQ--L 285
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
T S + L N + + + + WD R+ + +
Sbjct: 286 PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF 330
Score = 82.3 bits (204), Expect = 4e-18
Identities = 12/152 (7%), Positives = 45/152 (29%), Gaps = 27/152 (17%)
Query: 50 HGSKVHSVAWSC-DGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
+S+ + + +G + +A + L + + ++ + +
Sbjct: 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDL-RSPECPVGEFLINEGTPINNVYFA--- 344
Query: 109 PD-LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
L ++ D ++++ +S+ + + +
Sbjct: 345 AGALFVSSGFDTSIKLDIISDPESERPAI-----------------EFETPTFLVSNDDA 387
Query: 168 VDQLCW---HATNPDLLSTASGDKTVRIWDAR 196
V Q C+ +N ++L + +++
Sbjct: 388 VSQFCYVSDDESNGEVLEVGKNN-FCALYNLS 418
Score = 80.4 bits (199), Expect = 2e-17
Identities = 18/184 (9%), Positives = 45/184 (24%), Gaps = 43/184 (23%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKE--VVYRGHTGSVDQLCWHA 106
+ D + + + + + +DK + KE +V G++ VD +
Sbjct: 4 MTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNSRGVDAGKGNT 63
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
L A D +++ + ML
Sbjct: 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKML---------------------------KR 96
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNG 218
+ + +++ D+ + I + + P+G
Sbjct: 97 ADYTAVDTA---KLQMRRFILGTTEGDIKVLDSNFN--LQREIDQAHVSEITKLKFFPSG 151
Query: 219 NTIA 222
+
Sbjct: 152 EALI 155
Score = 33.4 bits (77), Expect = 0.072
Identities = 5/84 (5%), Positives = 17/84 (20%), Gaps = 34/84 (40%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ + V+ + S D+
Sbjct: 369 ERPAIEFETPTFLVSNDDAVSQFCYVSDDE------------------------------ 398
Query: 104 WHATNPDLLSTASGDKTVRIWDAR 127
+N ++L + +++
Sbjct: 399 ---SNGEVLEVGKNN-FCALYNLS 418
Score = 29.5 bits (67), Expect = 1.1
Identities = 5/42 (11%), Positives = 10/42 (23%), Gaps = 4/42 (9%)
Query: 35 VKHFNTHNDIKEYQAHGSKVHSVAWSCD----GRRLASGSFD 72
+ ++ V + D G L G +
Sbjct: 369 ERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNN 410
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 93.7 bits (233), Expect = 4e-22
Identities = 25/238 (10%), Positives = 64/238 (26%), Gaps = 41/238 (17%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALD----------KKGDLNKEVVYRGHTGSV 99
S V + + A S D + + ++ + +++ + +
Sbjct: 110 CSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE 169
Query: 100 DQLCWHATNPD---LLSTASGDKTVRIWDARTQK---------------------SQIML 135
+ A + LL + V I+D RT + +L
Sbjct: 170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVL 229
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD---LLSTASGDKTVRI 192
G+ + I+ D + ++ G + + ++ S + I
Sbjct: 230 ILGTTRGIIDIW--DIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTI 287
Query: 193 WDART-QKSQIIATKGENIN-ITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTS 248
W+ E + + P + N + + + ++ L +
Sbjct: 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLT 345
Score = 79.8 bits (197), Expect = 2e-17
Identities = 22/207 (10%), Positives = 50/207 (24%), Gaps = 16/207 (7%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 108
V S+ + L G+ + I+ D + ++ G + +
Sbjct: 212 PRHGAVSSICIDEECCVLILGTTRGIIDIW--DIRFNVLIRSWSFGDHAPITHVEVCQFY 269
Query: 109 PD---LLSTASGDKTVRIWDART-QKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
++ S + IW+ + S F +KG
Sbjct: 270 GKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEH-FLPIEKGLEELNFCGIRS 328
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVG 224
++ + +L T ++ ++ S + + P T
Sbjct: 329 LNALSTISVSNDK--ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTAN-- 384
Query: 225 NKEDLVTFIDVVKSLPPRERTLTSRGH 251
+T + S H
Sbjct: 385 -----LTMLLRKMKRTSTHSVDDSLYH 406
Score = 68.7 bits (168), Expect = 2e-13
Identities = 26/215 (12%), Positives = 57/215 (26%), Gaps = 46/215 (21%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY---RGHTGSVDQLCWHATNPD 110
+ + R F I G+L +++ S+
Sbjct: 20 LSTFKILPPLRDYKE--FGPIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETP 77
Query: 111 LLSTASGDKTVRIWDARTQKSQI------------------------MLASGSFDKSVAI 146
L T S ++IW+ + A S D + +
Sbjct: 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIV 137
Query: 147 FALD----------KKGDLNKEVVYRGHTGSVDQLCWHATNPD---LLSTASGDKTVRIW 193
++ + +++ + + + A + LL + V I+
Sbjct: 138 LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIF 197
Query: 194 DARTQK-SQIIATKGENINIT---WAPNGNTIAVG 224
D RT + QII + ++ + +G
Sbjct: 198 DIRTLERLQIIENSPRHGAVSSICIDEECCVLILG 232
Score = 58.3 bits (141), Expect = 4e-10
Identities = 14/202 (6%), Positives = 45/202 (22%), Gaps = 42/202 (20%)
Query: 6 IQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFN--THNDIKEYQAHGSKVHSVAWSCDG 63
++ ++ GS ++ +N + + + +
Sbjct: 263 VEVCQFYGKNSVIVVGGSS-------KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIE 315
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123
+ L +F + + + +L T ++ +
Sbjct: 316 KGLEELNFCG-------IRSLNALSTISVSNDK--------------ILLTDEATSSIVM 354
Query: 124 WDARTQKSQIMLASGSFDK-SVAIFALDKKGDLNKEVV----------YRGHTGSVDQLC 172
+ S + S S + + + H ++ +
Sbjct: 355 FSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSIS 414
Query: 173 WHATNP-DLLSTASGDKTVRIW 193
+ LL + I+
Sbjct: 415 TCEVDETPLLVACDNSGLIGIF 436
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 92.7 bits (231), Expect = 5e-22
Identities = 25/215 (11%), Positives = 64/215 (29%), Gaps = 49/215 (22%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
H + V ++ +G L S S D S +++ G+ GHTG++ + +
Sbjct: 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSL-NGERLG--TLDGHTGTIWSIDV---DC 84
Query: 110 D--LLSTASGDKTVRIWDARTQKSQI------------------MLASGS-----FDKSV 144
T S D ++++WD + + S+
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSI 144
Query: 145 AIFALDK----------KGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRI 192
I+ +++ + +++ + W + + D +
Sbjct: 145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW---STKGKYIIAGHKDGKISK 201
Query: 193 WDARTQKSQIIATKGENINIT---WAPNGNTIAVG 224
+D + + +I+ ++P+
Sbjct: 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236
Score = 87.7 bits (218), Expect = 3e-20
Identities = 26/179 (14%), Positives = 54/179 (30%), Gaps = 27/179 (15%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
WS G+ + +G D ++ + + + + H S+ + + +P
Sbjct: 174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI--DLHEKSISDMQF---SP 228
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
D T+S D + D T + + + K+ G
Sbjct: 229 DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAV-ITPLKE---------FIILGG 278
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT-KG--ENIN-ITWAPNGNTIA 222
A + S G R + + + I +G +N + +P G + A
Sbjct: 279 GQ----EAKDVTTTSANEGKFEARFYHKIFE--EEIGRVQGHFGPLNTVAISPQGTSYA 331
Score = 82.3 bits (204), Expect = 2e-18
Identities = 17/169 (10%), Positives = 42/169 (24%), Gaps = 48/169 (28%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ H + + +S D + S D + + + + K+ Y ++
Sbjct: 211 VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDV-STLQVLKK--YETDC-PLNTAV 266
Query: 104 WH-------------ATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
A + S G R + ++ +
Sbjct: 267 ITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV--------------- 311
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+GH G ++ + P ++ D +R+
Sbjct: 312 -----------QGHFGPLNTVAIS---PQGTSYASGGEDGFIRLHHFEK 346
Score = 64.2 bits (157), Expect = 4e-12
Identities = 14/138 (10%), Positives = 39/138 (28%), Gaps = 26/138 (18%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHN--DIKEYQAHGSKVHSVAWSCDGRRLASGS 70
SP+ + S+ D + +K+Y+ +++ + + G
Sbjct: 227 SPDLTYFITSSR-------DTNSFLVDVSTLQVLKKYETDCP-LNTAVITPLKEFIILGG 278
Query: 71 FDKSVAIFALDKKGDLN----------KEV-VYRGHTGSVDQLCWHATNPD--LLSTASG 117
++ + +E+ +GH G ++ + P ++
Sbjct: 279 GQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---PQGTSYASGGE 335
Query: 118 DKTVRIWDARTQKSQIML 135
D +R+
Sbjct: 336 DGFIRLHHFEKSYFDFKY 353
Score = 54.1 bits (131), Expect = 1e-08
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 37/117 (31%)
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
++ + I L GH + Q+ +
Sbjct: 7 HHHHSSGENLYFQGSHMKAIKL--------------------------TGHERPLTQVKY 40
Query: 174 HATNPD--LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPNGNTIAVG 224
N + LL + S D + +W + + + T G +I G
Sbjct: 41 ---NKEGDLLFSCSKDSSASVWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTG 92
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 91.9 bits (229), Expect = 8e-22
Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 33/155 (21%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN--KEVVY-RGHTGSVDQLCWHA 106
H S V+ ++ S +G+ +A+G DK + I+ D+ +++Q+ ++
Sbjct: 212 HESNVNHLSISPNGKYIATGGKDKKLLIW------DILNLTYPQREFDAGSTINQIAFN- 264
Query: 107 TNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
P ++ + D+ V+I++ TQ + + + A +G
Sbjct: 265 --PKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKA-------------EGQKGK 308
Query: 165 TGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
L W+ L D +R + T
Sbjct: 309 NPQCTSLAWN---ALGKKLFAGFTDGVIRTFSFET 340
Score = 89.6 bits (223), Expect = 6e-21
Identities = 33/190 (17%), Positives = 61/190 (32%), Gaps = 48/190 (25%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV-YRGHTGSV--------- 99
H S+V+SVA+S D R++ S ++ + ++ + G+ H+ V
Sbjct: 117 HQSEVYSVAFSPDNRQILSAGAEREIKLW--NILGECKFSSAEKENHSDWVSCVRYSPIM 174
Query: 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV 159
++ D +++W+ Q
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTF------------------------- 209
Query: 160 VYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKG--ENIN-ITW 214
+ H +V+ L P+ ++T DK + IWD IN I +
Sbjct: 210 --KAHESNVNHLSIS---PNGKYIATGGKDKKLLIWDILNLT-YPQREFDAGSTINQIAF 263
Query: 215 APNGNTIAVG 224
P +AVG
Sbjct: 264 NPKLQWVAVG 273
Score = 86.5 bits (215), Expect = 7e-20
Identities = 40/234 (17%), Positives = 80/234 (34%), Gaps = 44/234 (18%)
Query: 5 VIQFHTPKSPEYKLLPSGSQFHLVC--KIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
V F ++ + +L SGS+ V K+ + ++ K H V +A S +
Sbjct: 28 VAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKT 120
S S+DK++ ++ L + G K + GH V + + PD + +A ++
Sbjct: 88 NCFAISSSWDKTLRLWDL-RTGTTYK--RFVGHQSEVYSVAFS---PDNRQILSAGAERE 141
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV---------DQL 171
+++W+ + H+ V
Sbjct: 142 IKLWNILGECKFSSA------------------------EKENHSDWVSCVRYSPIMKSA 177
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNTIAVG 224
++ D +++W+ Q N+N ++ +PNG IA G
Sbjct: 178 NKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATG 231
Score = 63.4 bits (155), Expect = 8e-12
Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 29/114 (25%)
Query: 93 RGHTGSVDQLCW---HATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIF 147
GH+ V + N D +L + S DKTV IW ++ +G F
Sbjct: 18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ-----NGYFGIPHKAL 72
Query: 148 ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
GH V L + + ++S DKT+R+WD RT
Sbjct: 73 --------------TGHNHFVSDLAL---SQENCFAISSSWDKTLRLWDLRTGT 109
Score = 47.2 bits (113), Expect = 2e-06
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 31 IDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75
+ + + S+AW+ G++L +G D +
Sbjct: 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI 333
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 92.3 bits (230), Expect = 1e-21
Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 36/159 (22%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98
K + H V + G R+ SGS D ++ +++ G + GHTG
Sbjct: 106 GELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSA-VTGKCLR--TLVGHTGG 161
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
V +++ + S D+T+++W+A T + L
Sbjct: 162 VWSSQM---RDNIIISGSTDRTLKVWNAETGECIHTL----------------------- 195
Query: 159 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
GHT +V + H + + S D T+R+WD T
Sbjct: 196 ---YGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIET 228
Score = 87.3 bits (217), Expect = 7e-20
Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 41/188 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ Q H ++V+S+ + DG + SGS D S+ ++ + + G+ GH +
Sbjct: 272 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDV-ETGNCIH--TLTGHQSLTSGME 326
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
++L + + D TV+IWD +T + L
Sbjct: 327 L---KDNILVSGNADSTVKIWDIKTGQCLQTLQG-----------------------PNK 360
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDART----QKSQIIATKG--ENIN-ITWAP 216
H +V L + N + + T+S D TV++WD +T + + + G + I +
Sbjct: 361 HQSAVTCLQF---NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 417
Query: 217 NGNTIAVG 224
AVG
Sbjct: 418 TKLVCAVG 425
Score = 73.5 bits (181), Expect = 4e-15
Identities = 29/158 (18%), Positives = 53/158 (33%), Gaps = 35/158 (22%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
I H S + + L SG+ D +V I+ + L H +V L
Sbjct: 312 IHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ N + + T+S D TV++WD +T + L + G
Sbjct: 370 F---NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLES---------------------GG 405
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKT----VRIWDA 195
G V ++ + + + S + T + + D
Sbjct: 406 SGGVVWRIRA---SNTKLVCAVGSRNGTEETKLLVLDF 440
Score = 43.0 bits (102), Expect = 5e-05
Identities = 15/107 (14%), Positives = 26/107 (24%), Gaps = 33/107 (30%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
V + +P + + W KS +L
Sbjct: 73 HIKRRKVIK-PGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVL----------------- 114
Query: 153 GDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDART 197
+GH V + + S D T+++W A T
Sbjct: 115 ---------KGHDDHV----ITCLQFCGNRIVSGSDDNTLKVWSAVT 148
Score = 28.4 bits (64), Expect = 2.7
Identities = 9/64 (14%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNT 220
V + +P + + W KS +++ +++ GN
Sbjct: 73 HIKRRKVIK-PGFIHSPWKSAYIRQHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNR 131
Query: 221 IAVG 224
I G
Sbjct: 132 IVSG 135
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 86.1 bits (212), Expect = 3e-19
Identities = 32/255 (12%), Positives = 73/255 (28%), Gaps = 57/255 (22%)
Query: 43 DIKEYQAHG--SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR-GHTGSV 99
+ E +G SK + A+ LA + V I+ G EVV + ++
Sbjct: 7 SLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIY-----GQQQVEVVIKLEDRSAI 61
Query: 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQK------------------SQIMLASGSFD 141
++ + L + TV + +QK S + G +
Sbjct: 62 KEMRFVKGIY--LVVINAKDTVYVLSLYSQKVLTTVFVPGKITSIDTDASLDWMLIGLQN 119
Query: 142 KSVAIFALDKKGDLNKEV--------VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
S+ ++ +D+ + ++ + + W+ + + S + +
Sbjct: 120 GSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL-ISYEYVTLTY 178
Query: 194 DARTQK--------------------SQIIATKGENINITWAPNGNTIAVGNKEDLVTFI 233
+ + I + PN I ++++ + F
Sbjct: 179 SLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFW 238
Query: 234 DVVKSLPPRERTLTS 248
D RT+
Sbjct: 239 DANSGHMIMARTVFE 253
Score = 47.2 bits (111), Expect = 3e-06
Identities = 26/192 (13%), Positives = 53/192 (27%), Gaps = 22/192 (11%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113
+++W + + + ++ +G + Q
Sbjct: 394 PQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLL-KGGVRTKRQKLPA-EYGTAFI 451
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
T + +VRI+DA Q A F ++ LN + +VD++ +
Sbjct: 452 TGHSNGSVRIYDASHGDIQ----------DNASFEVNLSRTLN-----KAKELAVDKISF 496
Query: 174 HATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFI 233
A L+ + V ++ + EN + N +
Sbjct: 497 -AAETLELAVSIETGDVVLFKYEVNQF----YSVENRPESGDLEMNFRRFSLNNTNGVLV 551
Query: 234 DVVKSLPPRERT 245
DV P R
Sbjct: 552 DVRDRAPTGVRQ 563
Score = 35.2 bits (80), Expect = 0.020
Identities = 22/175 (12%), Positives = 54/175 (30%), Gaps = 32/175 (18%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAI---------FALDKKGDLNKEVVYRGHTGSVD 100
+ G +G + SV I + +L++ + + +VD
Sbjct: 434 GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSR-TLNKAKELAVD 492
Query: 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKS---QIMLASGSFDKSVAIFALDKKGDLNK 157
++ + A L+ + V ++ + + SG + + F+L+ +
Sbjct: 493 KISF-AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLV 551
Query: 158 EVVYR----------------GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196
+V R + G + +N + A ++ + D R
Sbjct: 552 DVRDRAPTGVRQGFMPSTAVHANKGKTSAIN--NSNIGFVGIAYAAGSLMLIDRR 604
Score = 33.7 bits (76), Expect = 0.055
Identities = 14/155 (9%), Positives = 40/155 (25%), Gaps = 9/155 (5%)
Query: 41 HNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 100
K + KV + + + + D S+ + + + V+
Sbjct: 201 DFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ 260
Query: 101 QLCWHATNPDLLSTASGD-KTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV 159
++ + + + + S ++S+ + L +
Sbjct: 261 PDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS--- 317
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
S + + + NP + V I +
Sbjct: 318 -----ITSYEGMKNYYANPKQMKIFPLPTNVPIVN 347
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 79.4 bits (195), Expect = 3e-17
Identities = 25/216 (11%), Positives = 51/216 (23%), Gaps = 38/216 (17%)
Query: 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102
+ G ++ RL + I L + + + +
Sbjct: 75 TTPNPRTGGEHPAIISRG-PCNRLLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYM 131
Query: 103 CWHAT-NPDLLSTASGDKTVRIWDARTQKSQI--------------------MLASGSFD 141
H N + A T+ I +LA S D
Sbjct: 132 YGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD 191
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQK 199
+ ++ L D + ++ + + + D+TV +D R
Sbjct: 192 GILDVYNL-SSPDQASSRFPVDEEAKIKEVKFA---DNGYWM-VVECDQTVVCFDLRKDV 246
Query: 200 S-------QIIATKGENINITWAPNGNTIAVGNKED 228
I K + +G + + E
Sbjct: 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES 282
Score = 65.9 bits (160), Expect = 1e-12
Identities = 29/231 (12%), Positives = 58/231 (25%), Gaps = 40/231 (17%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD--KKGDLNKEVVYRGHT 96
N + + K + + D D ++ L K R
Sbjct: 24 QAQNYSRNIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGG 83
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI----------------------M 134
+ N L + I D++T K
Sbjct: 84 EHPAIISRGPCN--RLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEY 141
Query: 135 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS-VDQLCWHATNPD--LLSTASGDKTVR 191
++ + + ++ +V+ + H D LL+ S D +
Sbjct: 142 FIWADNRGTIGFQSYEDD---SQYIVHSAKSDVEYSSGVLH---KDSLLLALYSPDGILD 195
Query: 192 IWDARTQKS-QIIATKGENINIT---WAPNGNTIAVGNKEDLVTFIDVVKS 238
+++ + E I +A NG + V + V D+ K
Sbjct: 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD 245
Score = 62.5 bits (151), Expect = 2e-11
Identities = 23/192 (11%), Positives = 52/192 (27%), Gaps = 27/192 (14%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+ S D LA S D + ++ L D + ++ +
Sbjct: 169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNL-SSPDQASSRFPVDEEAKIKEVKFA---D 224
Query: 110 D--LLSTASGDKTVRIWDARTQKSQIMLA---SGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+ + D+TV +D R + F + +D G
Sbjct: 225 NGYWM-VVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN--------- 274
Query: 165 TGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW--APNGNTIA 222
+ ++ + L+ DK + W + + + + + +G A
Sbjct: 275 ------MIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAA 328
Query: 223 VGNKEDLVTFID 234
+ D +
Sbjct: 329 ILKTNDSFNIVA 340
Score = 49.4 bits (117), Expect = 3e-07
Identities = 15/151 (9%), Positives = 44/151 (29%), Gaps = 21/151 (13%)
Query: 46 EYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG--DLNKEVVYRGHTGSVDQLC 103
+K+ V ++ +G + D++V F L K
Sbjct: 209 FPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD 267
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+ ++++ ++ ++ I+ FDK + D++ + +
Sbjct: 268 IDDSGKNMIAYSNESNSLTIY--------------KFDKKTKNWTKDEE----SALCLQS 309
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
T + + + + + + I
Sbjct: 310 DTADFTDMDVVCGDGGIAAILKTNDSFNIVA 340
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 76.1 bits (186), Expect = 5e-16
Identities = 37/245 (15%), Positives = 71/245 (28%), Gaps = 56/245 (22%)
Query: 13 SPEYKLLPSGSQFHLVC----KIDDYVKHFNTHNDIKEYQA-----HGSKVHSVAWSCDG 63
S +Y L+ +G L + K + N I + +H +A SCD
Sbjct: 45 SNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDN 104
Query: 64 RRLA----SGSFDKSVAIFALDKKGDLNKE--------VVYRGHTGSVDQLCWHATNPDL 111
L+ S + +A F + + K+ + + G V + W+ T P +
Sbjct: 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM 164
Query: 112 LSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 171
++ D ++ + K T +V +
Sbjct: 165 VAVCLADGSIAVLQVTETV--------------------------KVCATLPSTVAVTSV 198
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGEN--------INITWAPNGNTIAV 223
CW L + TV + Q+ ++I +++ W V
Sbjct: 199 CWSPKGKQLAV-GKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIV 257
Query: 224 GNKED 228
D
Sbjct: 258 YAAAD 262
Score = 69.2 bits (168), Expect = 1e-13
Identities = 25/185 (13%), Positives = 56/185 (30%), Gaps = 21/185 (11%)
Query: 57 VAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE-VVYRGHTGSVDQLCWHATNPDLLS-- 113
A G ++ D ++K + + L N L +
Sbjct: 52 FAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACM 111
Query: 114 -TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172
++ + +D RT ++ A +K + + G V +
Sbjct: 112 MSSEYGSIIAFFDVRTFSNE---------------AKQQKRPFAYHKLLKDAGGMVIDMK 156
Query: 173 WHATNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENINITWAPNGNTIAVGNKEDLV 230
W+ T P +++ D ++ + + + ++ W+P G +AVG + V
Sbjct: 157 WNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTV 216
Query: 231 TFIDV 235
Sbjct: 217 VQYLP 221
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 75.5 bits (185), Expect = 9e-16
Identities = 38/234 (16%), Positives = 69/234 (29%), Gaps = 15/234 (6%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDG---RRLASG 69
+ + + +F V ID + H S + V D + + +
Sbjct: 158 AEDDTTVIIADKFGDVYSIDINSIP-EEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITS 216
Query: 70 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 129
D+ + I + + + GH V +C LL +A GD + WD +T
Sbjct: 217 DRDEHIKISHYPQCFIV--DKWLFGHKHFVSSICC--GKDYLLLSAGGDDKIFAWDWKTG 272
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 189
K+ S K E +V ++ P + K
Sbjct: 273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENN-DIIEFAVSKIIKSKNLPFVAFFVEATKC 331
Query: 190 VRIW------DARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVK 237
+ I QII I+++ + + + NKE + K
Sbjct: 332 IIILEMSEKQKGDLALKQIITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAK 385
Score = 70.1 bits (171), Expect = 6e-14
Identities = 23/205 (11%), Positives = 58/205 (28%), Gaps = 37/205 (18%)
Query: 21 SGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80
S + + K D F+ + + A + S + ++L S D
Sbjct: 34 SPNHWEFAGKWSD---DFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI----KR 86
Query: 81 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI------- 133
+ + + L + L++ A DK++ ++D +
Sbjct: 87 TAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF 146
Query: 134 ----------------MLASGSFDKSVAIFALDKKGDLNKEVVYR---GHTGSVDQLCWH 174
+ DK ++++D ++ GH + +
Sbjct: 147 CFSKRPNAISIAEDDTTVIIA--DKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI 204
Query: 175 ATNPD--LLSTASGDKTVRIWDART 197
+ + T+ D+ ++I
Sbjct: 205 KDSDGHQFIITSDRDEHIKISHYPQ 229
Score = 60.1 bits (145), Expect = 1e-10
Identities = 26/211 (12%), Positives = 61/211 (28%), Gaps = 22/211 (10%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113
+ ++ S DG + + + F N + D++ S
Sbjct: 7 LQNLLTSRDGSLVFAII-KNCILSFKYQ---SPNHWEFAGKWSDDFDKIQ--------ES 54
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
+ K + + + L S D + + + L
Sbjct: 55 RNTTAKEQQGQSSENENENKKLKSNKGDSI----KRTAAKVPSPGLGAPPIYSYIRNLRL 110
Query: 174 HATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN------ITWAPNGNTIAVGNKE 227
+ L++ A DK++ ++D ++ + I+ A + T+ + +K
Sbjct: 111 TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKF 170
Query: 228 DLVTFIDVVKSLPPRERTLTSRGHLMETRSL 258
V ID+ + GH+ +
Sbjct: 171 GDVYSIDINSIPEEKFTQEPILGHVSMLTDV 201
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 71.3 bits (174), Expect = 2e-14
Identities = 27/211 (12%), Positives = 66/211 (31%), Gaps = 38/211 (18%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG-----DLNKEVVYRGHTGSVDQLC 103
AH ++S++ + D S + D + ++ L+ K T +
Sbjct: 175 AHTYHINSISINSDYETYLS-ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAE 233
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRG 163
+H + + +S T+R+ D R AS D+ +F ++ D + +
Sbjct: 234 FHPNSCNTFVYSSSKGTIRLCDMR--------ASALCDRHSKLF--EEPEDPSNRSFFSE 283
Query: 164 HTGSVDQLCWHATNPDLLSTASG-DKTVRIWDARTQKSQIIATKG--------------- 207
S+ + + + +V++WD + + +
Sbjct: 284 IISSISDVKFS---HSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEND 340
Query: 208 ---ENINITWAPNGNTIAVGNKEDLVTFIDV 235
+ W + + + G+ + D
Sbjct: 341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDR 371
Score = 69.0 bits (168), Expect = 1e-13
Identities = 28/217 (12%), Positives = 62/217 (28%), Gaps = 37/217 (17%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE--------V 90
+ + A + +V ++ G LA+G V IF +++ +
Sbjct: 16 QVKGAVDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYS 75
Query: 91 VYRGHTGSVDQL------------CW-HATNPDLLSTASGDKTVRIWDARTQKSQIML-- 135
++ H D L W N ++ DKT+++W + +
Sbjct: 76 TFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYN 135
Query: 136 ----------ASGSFDKSVAIFALDKKGDL--NKEVVYRGHTGSVDQLCWHATNPDLLST 183
+ V +F + + HT ++ + ++ LS
Sbjct: 136 LKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLS- 194
Query: 184 ASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNT 220
+ D + +W + N+ T
Sbjct: 195 -ADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT 230
Score = 52.1 bits (124), Expect = 5e-08
Identities = 26/140 (18%), Positives = 47/140 (33%), Gaps = 20/140 (14%)
Query: 29 CKIDDYVKHFNTHNDIKE---YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD 85
D + K F D + S + V +S GR + + SV ++ D +
Sbjct: 260 ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-YLSVKVW--DLNME 316
Query: 86 LNKEVVYRGHTGSVDQLCWHATNP--------------DLLSTASGDKTVRIWDARTQKS 131
Y+ H +LC N ++ T S + R++D T++
Sbjct: 317 NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376
Query: 132 QIMLASGSFDKSVAIFALDK 151
+ AS +K + K
Sbjct: 377 ITLEASRENNKPRTVLKPRK 396
Score = 49.0 bits (116), Expect = 6e-07
Identities = 19/162 (11%), Positives = 52/162 (32%), Gaps = 12/162 (7%)
Query: 66 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRI 123
+A + KG ++ +V + + + N LL+T V I
Sbjct: 1 MAGAGGGNDIQWCFSQVKGAVDDDV---AEADIISTVEF---NHSGELLATGDKGGRVVI 54
Query: 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW-HATNPDLLS 182
+ + + G ++ + + + D K + ++++ W N
Sbjct: 55 FQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL---EIEEKINKIRWLPQKNAAQFL 111
Query: 183 TASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVG 224
++ DKT+++W + + + + + +
Sbjct: 112 LSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR 153
Score = 33.6 bits (76), Expect = 0.058
Identities = 14/150 (9%), Positives = 41/150 (27%), Gaps = 18/150 (12%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDY------VKHFNTHNDIKEYQAHGSKVH------SVAWS 60
S + + + K+ D V+ + H ++ + W+
Sbjct: 294 SHSGRYMMTRDYLS--VKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN 351
Query: 61 CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120
+ +GS++ +F + K +++ + S
Sbjct: 352 GSDSVVMTGSYNNFFRMFDRNTK----RDITLEASRENNKPRTVLKPRKVCASGKRKKDE 407
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALD 150
+ + K + A + +A+ +
Sbjct: 408 ISVDSLDFNKKILHTAWHPKENIIAVATTN 437
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 69.1 bits (168), Expect = 1e-13
Identities = 21/239 (8%), Positives = 65/239 (27%), Gaps = 35/239 (14%)
Query: 25 FHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG 84
++ D S + + + + G + VA F L
Sbjct: 240 LEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL-SPTTVVCGFKNGFVAEFDLTDPE 298
Query: 85 DLNKEVVYRGHTGSVDQL--CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDK 142
+ + H + + + ++ST + D I++ + + S
Sbjct: 299 VPS--FYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS----- 351
Query: 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ- 201
R ++ + + + + ++R +R +
Sbjct: 352 -------------------RFRGSNLVPVVYCPQIYSYIYSDG-ASSLRAVPSRAAFAVH 391
Query: 202 -IIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERTLTSRGHLMETRSLW 259
+++ + I + + G+ + + + + L + + ++ LW
Sbjct: 392 PLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL---HGIKNSSATQKSLRLW 447
Score = 50.6 bits (120), Expect = 2e-07
Identities = 22/199 (11%), Positives = 54/199 (27%), Gaps = 28/199 (14%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHND----IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV 75
+D Y FN + + GS + V + S+
Sbjct: 320 DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSL 379
Query: 76 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIML 135
++ + +P +L+ S D ++ I +A + +
Sbjct: 380 RAVPSR---AAFAVHPLVSRETTITAIGVSRLHPMVLA-GSADGSLIITNAARRLLHGIK 435
Query: 136 ASGSFDKSVAIFALDKKGDLNKEVVYRG------------------HTGSVDQLCWHATN 177
S + KS+ ++ D +K + H ++ W+ T+
Sbjct: 436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETS 495
Query: 178 P--DLLSTASGDKTVRIWD 194
+ ++ + +
Sbjct: 496 AGGKCYAFSNSAGLLTLEY 514
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 63.5 bits (154), Expect = 7e-12
Identities = 24/216 (11%), Positives = 52/216 (24%), Gaps = 36/216 (16%)
Query: 11 PKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGS 70
+ + D V+ +AH + + V + +A+ S
Sbjct: 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS 214
Query: 71 FDKS-VAIFALDKKGDLNKEVVYRGHT--GSVDQLCWHATNPDLLSTASGDKTVRIWDAR 127
D + + +F + D +R V + W L+ S T+ +++
Sbjct: 215 QDGTIIRVFKTE---DGVLVREFRRGLDRADVVDMKWSTDG-SKLAVVSDKWTLHVFEIF 270
Query: 128 TQK--SQIMLASGSFDK------SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 179
+ + L K S+ F L
Sbjct: 271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH---------------------VRGC 309
Query: 180 LLSTASGDKTVRIWDARTQKSQIIATKGENINITWA 215
++ S V +W + +
Sbjct: 310 KIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLI 345
Score = 58.1 bits (140), Expect = 5e-10
Identities = 17/171 (9%), Positives = 42/171 (24%), Gaps = 15/171 (8%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 98
T N I + V ++ D L + KS I+ + +
Sbjct: 7 ITRNPIVPENHVSNPVTDYEFNQDQSCLILST-LKSFEIYNVHPVAHI-----MSQEMRH 60
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGS------FDKSVAIFALDKK 152
+ ++ + + V IWD ++ + + + + +
Sbjct: 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDV 120
Query: 153 ---GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+C + + S + I ++ S
Sbjct: 121 ISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGS 171
Score = 30.0 bits (67), Expect = 0.73
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 162 RGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGN 219
+ V + N D L ++ K+ I++ + + N
Sbjct: 16 NHVSNPVTDYEF---NQDQSCLILST-LKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTN 71
Query: 220 TIA-VGNKEDLVTFIDVVK 237
+A V +++V D VK
Sbjct: 72 YVAFVTGVKEVVHIWDDVK 90
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.3 bits (130), Expect = 2e-08
Identities = 32/176 (18%), Positives = 56/176 (31%), Gaps = 53/176 (30%)
Query: 74 SVAIFA-LDKKGDLNKEVVYRGHTGSVDQ---LCWHATNPDLLSTASGDKTVRIWDARTQ 129
A F L KG + + + GH S+ + L A D++S S + V R
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGH--SLGEYAALASLA---DVMSIESLVEVVFY---R-- 1789
Query: 130 KSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ-LCWHATNPDLLSTASGDK 188
G + V R G + + A NP ++ + +
Sbjct: 1790 -----------------------GMTMQVAVPRDELGRSNYGMI--AINPGRVAASFSQE 1824
Query: 189 TVRIWDARTQKSQIIATKGE-----NINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239
++ R + G N N+ N +A G+ L T +V+ +
Sbjct: 1825 ALQYVVER-----VGKRTGWLVEIVNYNV---ENQQYVAAGDLRALDTVTNVLNFI 1872
Score = 31.9 bits (72), Expect = 0.27
Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 58/164 (35%)
Query: 7 QFHTPKSPEYKL------LPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWS 60
Q P S E KL LP S FH + + ++V++
Sbjct: 404 QSRIPFS-ERKLKFSNRFLPVASPFH-----SHLLV------PASDLINKDLVKNNVSF- 450
Query: 61 CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS-----VDQLC-----WHATN-- 108
+ + + + ++ DL R +GS VD + W T
Sbjct: 451 -NAKDIQ-------IPVYDTFDGSDL------RVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 109 ---------PDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKS 143
P S G T R D ++++A G+ D +
Sbjct: 497 KATHILDFGPGGAS-GLGVLTHRNKDGTGV--RVIVA-GTLDIN 536
Score = 28.9 bits (64), Expect = 2.1
Identities = 41/274 (14%), Positives = 75/274 (27%), Gaps = 103/274 (37%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHNDIKEYQA--------------HGSKVHSVAWSCDGRR 65
P+ + LV K YV + + ++ G+ +H++A
Sbjct: 54 PT-TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 66 LASGSFDKSVAIFALDKKGDLNKEVV--Y---RGHTGSVDQLCWHATNPDLLSTASGDKT 120
D KE++ Y R +N L +
Sbjct: 113 ---------------DTTLVKTKELIKNYITARIMAKRPFD---KKSNSALFRAVG-EGN 153
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFA--------LDKKGDLNKEVVYRGHTGSVDQLC 172
++ VAIF + +L +Y+ + V L
Sbjct: 154 AQL--------------------VAIFGGQGNTDDYFE---ELRD--LYQTYHVLVGDLI 188
Query: 173 WHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW------APNGNTIAVGNK 226
+ + LS T ++ + T+G NI + W P+
Sbjct: 189 KFSA--ETLSELI---------RTTLDAEKVFTQGLNI-LEWLENPSNTPD--------- 227
Query: 227 EDLVTFIDVVKSLPPRERTLTSRGHLMETRSLWG 260
+D + I + S P + H + T L G
Sbjct: 228 KDYLLSIPI--SCPL--IGVIQLAHYVVTAKLLG 257
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit;
oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus
denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Length = 337
Score = 42.8 bits (100), Expect = 5e-05
Identities = 25/187 (13%), Positives = 50/187 (26%), Gaps = 14/187 (7%)
Query: 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDK-KGDLNKEVVYRGHTGSVDQLCWHATNP 109
++ +AW+ DG +L D V D + D L +
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH- 192
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+SG + AR + + +D + R
Sbjct: 193 ----ESSGVMATPFYTARKDIDPADPTAYRT----GLLTMDLETGEMAMREVRIMDVFYF 244
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKED 228
A NP + +D S + + ++ + +G+T+ +G
Sbjct: 245 ST---AVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALG 301
Query: 229 LVTFIDV 235
+ D
Sbjct: 302 DLAAYDA 308
Score = 29.0 bits (64), Expect = 1.4
Identities = 9/125 (7%), Positives = 26/125 (20%), Gaps = 30/125 (24%)
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
D + + + + D + + G
Sbjct: 2 DYILAPARPDKLVVIDTEK------------MAVDKVITIADAGPTPMVP---------- 39
Query: 170 QLCWHATNPD---LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
P +T + +++ D T ++ + G ++ K
Sbjct: 40 -----MVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK 94
Query: 227 EDLVT 231
+
Sbjct: 95 TLAIY 99
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 38.6 bits (90), Expect = 0.001
Identities = 30/221 (13%), Positives = 60/221 (27%), Gaps = 41/221 (18%)
Query: 51 GSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTG-SVDQLCWHATN 108
GS S DG ++ + + V+I V+ G S +
Sbjct: 31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTA-----TNNVIATVPAGSSPQGVAVSPDG 85
Query: 109 PDLLSTASGDKTVRIWDARTQK-------------------SQIMLASGSFDKSVAIFAL 149
+ T T+ + D + + + + + DK+V++
Sbjct: 86 KQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINT 145
Query: 150 DKKGDLNKEVVYRGHTG-SVDQLCWHATNPDLLSTASGDKTVRIWDARTQK-SQIIATKG 207
K V+ G S + + ++ + D T + +
Sbjct: 146 V-----TKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA 200
Query: 208 ENINITWAPNGNTIAV---GNKEDLVTFID-----VVKSLP 240
I P G V + V+ ID + +P
Sbjct: 201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP 241
Score = 33.2 bits (76), Expect = 0.071
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 183 TASGDKTVRIWDARTQK-SQIIATKGENINITWAPNGNTIAVGNKED-LVTFID-----V 235
S + + D + K + I + +P+G + V N V+ ID V
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66
Query: 236 VKSLP 240
+ ++P
Sbjct: 67 IATVP 71
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE CIT PEG; 1.35A
{Bacteroides caccae}
Length = 276
Score = 37.1 bits (85), Expect = 0.003
Identities = 23/188 (12%), Positives = 45/188 (23%), Gaps = 33/188 (17%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
G + +SVA + G L S S + + G G Q +
Sbjct: 35 KGWECNSVAATKAGEILFSYSKG----AKMITRDGRELWN--IAAPAGCEMQTARILPDG 88
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+ L G + I ++ KG++ + +
Sbjct: 89 NALVAWCGHPST------------------------ILEVNMKGEVLSKTEFETGIERPH 124
Query: 170 Q---LCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
+ L VR Q + G + + NG+ +
Sbjct: 125 AQFRQINKNKKGNYLVPLFATSEVREIAPNGQLLNSVKLSGTPFSSAFLDNGDCLVACGD 184
Query: 227 EDLVTFID 234
++
Sbjct: 185 AHCFVQLN 192
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 36.7 bits (85), Expect = 0.007
Identities = 23/185 (12%), Positives = 49/185 (26%), Gaps = 38/185 (20%)
Query: 54 VHSVAWSCDGRRLA-------SGSFDKSVAIFA-LDKKGDL-NKEVVYRGHTGSVDQLCW 104
V S DGR+ ++ + A + + G + + G ++ Q W
Sbjct: 190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEW 249
Query: 105 HATNPD----LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV 160
PD + + +G + D T + + +E
Sbjct: 250 A---PDGSLIVATDRTGWWNLHRVDPATGAATQLCR--------------------REEE 286
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW--DARTQKSQIIATKGENINITWAPNG 218
+ G + + L++ G + D + + A T +G
Sbjct: 287 FAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAAGPWTEWAATLTVSG 346
Query: 219 NTIAV 223
Sbjct: 347 TRAVG 351
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 35.1 bits (81), Expect = 0.017
Identities = 27/202 (13%), Positives = 57/202 (28%), Gaps = 35/202 (17%)
Query: 39 NTHNDIKEYQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTG 97
Q G +A +G+RL + + + + I D K K+++ G
Sbjct: 172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEH 231
Query: 98 SVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNK 157
+ T S V + D R
Sbjct: 232 FFINISLDTARQRAFITDSKAAEVLVVDTRNGN--------------------------- 264
Query: 158 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATK--GENIN-ITW 214
++ + + ++ + T V + DA++ K ++ T + N +
Sbjct: 265 -ILAKVAAPESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK--VVKTFDTPTHPNSLAL 321
Query: 215 APNGNTIAVGNKE-DLVTFIDV 235
+ +G T+ V K+
Sbjct: 322 SADGKTLYVSVKQKSTKQQEAT 343
Score = 33.2 bits (76), Expect = 0.067
Identities = 32/198 (16%), Positives = 58/198 (29%), Gaps = 35/198 (17%)
Query: 51 GSKVHSVAWSCDGRRL-----ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105
G + +A+S L S DK ++ LD EV H
Sbjct: 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV---TLEVTQAIHNDLK----PF 92
Query: 106 --ATNPD---LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV 160
N L + + V DA+T + + L ++ + L + +V
Sbjct: 93 GATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRE-----LV 147
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENINITWAPNG 218
T +V +S + + + D K + I T + + G
Sbjct: 148 ADDATNTVY-----------ISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG 196
Query: 219 NTIAVGNKEDLVTFIDVV 236
+ N + + ID
Sbjct: 197 KRLYTTNADGELITIDTA 214
Score = 29.4 bits (66), Expect = 1.2
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 183 TASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKED-LVTFID-----V 235
V D T + Q I + T T+ GN + VT ID V
Sbjct: 64 KLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV 123
Query: 236 VKSLP 240
L
Sbjct: 124 KGRLV 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded
beta-propeller, structural genomics, PSI-2; 1.85A
{Agrobacterium tumefaciens str}
Length = 297
Score = 33.9 bits (78), Expect = 0.036
Identities = 25/198 (12%), Positives = 54/198 (27%), Gaps = 42/198 (21%)
Query: 56 SVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD----- 110
+ WS DG+ L S + ++V T + +PD
Sbjct: 46 APNWSPDGKYLLLNSEGLLYRLSLAG--DPSPEKVDTGFATICNNDHGI---SPDGALYA 100
Query: 111 -LLSTASGDKTVRIWDARTQKSQIMLASGSFD---------KSVAIFALDKKGDLNKEVV 160
G + + + ++ + KS + + + +
Sbjct: 101 ISDKVEFGKSAIYLLPSTGGTPRL-MTKNLPSYWHGWSPDGKSFT-YCGIRDQVFD---I 155
Query: 161 YR--GHTGSVDQLCWHATN-------PD---LLSTASGDKTVRIW--DARTQKSQIIATK 206
Y +G +L PD + +S ++IW + I T
Sbjct: 156 YSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-TD 214
Query: 207 GENINIT--WAPNGNTIA 222
+ +P+G+ +
Sbjct: 215 SAYGDWFPHPSPSGDKVV 232
Score = 32.8 bits (75), Expect = 0.10
Identities = 16/166 (9%), Positives = 40/166 (24%), Gaps = 26/166 (15%)
Query: 58 AWSCDGRRLASGSFDKSV-AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 116
S RL++G +I + + VV++ + W LL +
Sbjct: 4 RQSTLHTRLSTGPGGSMRSSIEIFNIRTR-KMRVVWQT-PELFEAPNWSPDGKYLLLNSE 61
Query: 117 GDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176
G ++ + + + D
Sbjct: 62 GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD-----GALYAI--------------- 101
Query: 177 NPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIA 222
G + + + +++ + W+P+G +
Sbjct: 102 ---SDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFT 144
Score = 26.6 bits (59), Expect = 9.3
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 182 STASGDKTVRIWDARTQKSQII-ATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240
S ++ I++ RT+K +++ T W+P+G + + N E L+ + +
Sbjct: 16 PGGSMRSSIEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLL-NSEGLLYRLSLAGDPS 74
Query: 241 PRERTLTS 248
P +
Sbjct: 75 PEKVDTGF 82
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetica protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 32.1 bits (72), Expect = 0.18
Identities = 9/70 (12%), Positives = 20/70 (28%)
Query: 34 YVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93
+ + N + H W+ + G+ D + F++ K + E +
Sbjct: 112 FKDNKMLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFE 171
Query: 94 GHTGSVDQLC 103
D
Sbjct: 172 SSIRLSDAGS 181
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A
{Yersinia enterocolitica subsp}
Length = 388
Score = 30.6 bits (68), Expect = 0.58
Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 7/168 (4%)
Query: 58 AWSCDGRRLA-SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTAS 116
++ DG +L G+FD + LD + ++ G + + L
Sbjct: 42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKD 100
Query: 117 GDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 176
G +R+ A +++ + + + ++V
Sbjct: 101 GRNLMRVDLATLEENVVYQVPAEWV----GYGTWVANSDCTKLVGIEIRREDWVPLTDWK 156
Query: 177 NPDLLSTASGDKTVRIWDARTQKSQIIAT-KGENINITWAPNGNTIAV 223
+ D +T +S +I + + P ++
Sbjct: 157 KFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVA 204
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 30.3 bits (68), Expect = 0.71
Identities = 17/98 (17%), Positives = 26/98 (26%), Gaps = 27/98 (27%)
Query: 164 HTGSVDQLCWHATNPDLLSTASGDKTVR--IWD--------ARTQ----KSQII-----A 204
T ++ + A N L K WD A Q +S + +
Sbjct: 72 QTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS 131
Query: 205 TKGENINITW-------APNGNTIAVGNKEDLVTFIDV 235
N + W I V NK D ++
Sbjct: 132 RTDSNKH-YWLRHIEKYGGKSPVIVVMNKIDENPSYNI 168
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 30.2 bits (68), Expect = 0.85
Identities = 21/173 (12%), Positives = 46/173 (26%), Gaps = 30/173 (17%)
Query: 54 VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 113
GR + KG + +++ + + P
Sbjct: 66 SVLDPHYGVGRVIL----------VRDVSKGA-EQHALFK----------VNTSRPGEEQ 104
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
K +RI ++ + D+ VA++ALD G + R
Sbjct: 105 RLEAVKPMRILSGVDTGEAVVFTGATEDR-VALYALDGGGL---RELARLPGFGFVS--D 158
Query: 174 HATNPDLLSTASGDKTVRIW--DART-QKSQIIATKGENINITWAPNGNTIAV 223
+ G V ++ + + + +G + + +P A
Sbjct: 159 IRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG 211
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A
{Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Length = 349
Score = 29.7 bits (66), Expect = 0.87
Identities = 11/124 (8%), Positives = 35/124 (28%), Gaps = 5/124 (4%)
Query: 113 STASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172
+ + ++ AR + + A+ L +E T
Sbjct: 204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF--ADLTELYFTGL 261
Query: 173 WHATNPDLLSTASGDKTVRIWDARTQKS-QIIATKGENINITWAPNGNTIAVGNKEDLVT 231
+P+ + + +D + +K + + + G+ + +G + +
Sbjct: 262 RSPKDPNQIYGVLN--RLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLA 319
Query: 232 FIDV 235
+
Sbjct: 320 VFNP 323
Score = 28.9 bits (64), Expect = 1.8
Identities = 27/202 (13%), Positives = 54/202 (26%), Gaps = 25/202 (12%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVA----------IFALDKKGDLNKEVVYRGHTGSV 99
G ++S A S DG+ + + + L + V T +
Sbjct: 90 VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV---RTFPM 146
Query: 100 DQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEV 159
+ + D S + D +T K + L ++++ D+
Sbjct: 147 PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYS-----APDVLYFW 201
Query: 160 VYRGHTGSVDQLCWHATNPD---LLSTASGDKTVRIWDARTQKSQIIATKGENI---NIT 213
++ L A D +TA D +T K+
Sbjct: 202 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGL 261
Query: 214 WAPNGNTIAVGNKEDLVTFIDV 235
+P G + + D+
Sbjct: 262 RSPKDPNQIYGV-LNRLAKYDL 282
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative; 2.20A {Erwinia
carotovora}
Length = 157
Score = 28.6 bits (63), Expect = 1.2
Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 182 STASGDKTVRI----WDARTQKSQIIATKGENINITWAPNGNTIAV 223
S SG VR+ D + + I W P+ I +
Sbjct: 43 SMESGRDQVRVRLLKHDFPNNRYEFWEEGATGPTILWTPDNPGIEL 88
>2mad_H Methylamine dehydrogenase (heavy subunit);
oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A
{Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H*
1maf_H*
Length = 373
Score = 29.1 bits (64), Expect = 1.6
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 185 SGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAV----------GNKEDLVTFID 234
S + DA + G N A +G+ A+ G + D V D
Sbjct: 44 SAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFD 103
Query: 235 VVKSLPPRERTL 246
V LP + L
Sbjct: 104 PVTFLPIADIEL 115
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 28.9 bits (65), Expect = 1.8
Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 14/146 (9%)
Query: 111 LLSTASGDKTVRIW--DARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 168
L S + +W D + ++++++ S + ++K +E +
Sbjct: 54 LRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEK--ARRERQRIAAMTGI 111
Query: 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQK----SQIIATKGENINITWAPNGNTIAVG 224
W LL G+ + ++D + + Q+ +G + +P G ++
Sbjct: 112 VDYQWSPDAQRLLFPLGGE--LYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFI 169
Query: 225 NKEDLVTFIDVVKSLPPRERTLTSRG 250
+L V+ R+ LT+ G
Sbjct: 170 RGRNLW----VIDLASGRQMQLTADG 191
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 28.9 bits (64), Expect = 1.8
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
Query: 166 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGNTIAVG 224
G L + N + L R+ D + + + + I W +++ +
Sbjct: 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIIT 196
Query: 225 N 225
N
Sbjct: 197 N 197
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A
{Pyrococcus furiosus}
Length = 347
Score = 28.7 bits (64), Expect = 2.0
Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 17/188 (9%)
Query: 50 HGSKVHSVAWSCDGRRLA---SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
S DG+++A + K I+ D + ++ L W+
Sbjct: 57 FIENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET---LSSKKILEAKNIRSLEWNE 113
Query: 107 TNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFD-KSVAIFALDKKGDLNKEVVYRGHT 165
+ LL + + G FD + + D + +EV+
Sbjct: 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES---EEVIEEFEK 170
Query: 166 GSVDQLCWH-----ATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNT 220
WH P K I+ K + + K +G
Sbjct: 171 PRFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEKVS--FYAVDSDGER 228
Query: 221 IAVGNKED 228
I + K +
Sbjct: 229 ILLYGKPE 236
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan
degradation, isofagomine, hydrolase; 0.98A {Streptomyces
lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A
1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A*
2g4f_A 1v6y_A
Length = 313
Score = 28.0 bits (63), Expect = 3.0
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)
Query: 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLST 183
DA T+ + G F+ S A + K+V RGHT L WH+ P + +
Sbjct: 49 IDA-TEPQR-----GQFNFSSADRVYNWAVQNGKQV--RGHT-----LAWHSQQPGWMQS 95
Query: 184 ASGD 187
SG
Sbjct: 96 LSGS 99
Score = 28.0 bits (63), Expect = 3.4
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGD 118
RGHT L WH+ P + + SG
Sbjct: 79 RGHT-----LAWHSQQPGWMQSLSGS 99
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein
complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Length = 415
Score = 28.2 bits (63), Expect = 3.0
Identities = 8/44 (18%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 181 LSTASGDKTVRIWDARTQKSQIIAT-KGENINITWAPNGNTIAV 223
++ SG + I + +A+ N ++P+G+ +A
Sbjct: 196 VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAF 239
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM
barrel, cellulose degradation, glycosidase, hydrolase;
HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A*
3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A*
1j01_A* 2exo_A 2xyl_A 2his_A*
Length = 315
Score = 28.1 bits (63), Expect = 3.2
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 5/26 (19%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGD 118
GHT L WH+ PD +G
Sbjct: 78 YGHT-----LVWHSQLPDWAKNLNGS 98
Score = 28.1 bits (63), Expect = 3.2
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 5/26 (19%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGD 187
GHT L WH+ PD +G
Sbjct: 78 YGHT-----LVWHSQLPDWAKNLNGS 98
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 28.1 bits (63), Expect = 3.7
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 192 IWDARTQK-SQIIATKGENINITWAPNGNTIAVGNKEDL-VTFIDVVKSLPPRERTLTSR 249
+D +K + + T E ++ ++P G+ +A +L + + R +T
Sbjct: 105 GFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTID 164
Query: 250 G 250
G
Sbjct: 165 G 165
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme,
catalytic-site mutant, chemica hydrolase; 1.60A
{Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A
2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A*
1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Length = 436
Score = 28.1 bits (62), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGD 118
RGHT L WH+ P + + SG
Sbjct: 79 RGHT-----LAWHSQQPGWMQSLSGS 99
Score = 28.1 bits (62), Expect = 3.8
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGD 187
RGHT L WH+ P + + SG
Sbjct: 79 RGHT-----LAWHSQQPGWMQSLSGS 99
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,,
hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3
Length = 302
Score = 27.7 bits (62), Expect = 4.6
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGD 118
RGHT L WH+ P +S +
Sbjct: 78 RGHT-----LVWHSQLPGWVSPLAAT 98
Score = 27.7 bits (62), Expect = 4.6
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGD 187
RGHT L WH+ P +S +
Sbjct: 78 RGHT-----LVWHSQLPGWVSPLAAT 98
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT;
protein-protein complex, translation; HET: MSE; 2.20A
{Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Length = 291
Score = 27.0 bits (60), Expect = 6.0
Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 10/74 (13%)
Query: 139 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 198
+ VA+ L +L ++ + +L + + +++ D
Sbjct: 94 QLVQQVALGTLLHCQNLKDQLSTYSKGFLNS-----SELSELPAGPEREGSLK--DQLAL 146
Query: 199 KSQIIATKGENINI 212
I GEN+ +
Sbjct: 147 A---IGKLGENMIL 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 27.1 bits (60), Expect = 6.6
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 16/108 (14%)
Query: 116 SGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 175
S D + +++ T +S +L++ + KSV D +
Sbjct: 33 SADNNIVLYNIETGQSYTILSNRTM-KSVNASNYGLSPDRQFVYL--------------E 77
Query: 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATKGENI-NITWAPNGNTIA 222
++ L S T I+D + I + W+P G+ +A
Sbjct: 78 SDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLA 125
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.406
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,958,551
Number of extensions: 226185
Number of successful extensions: 2364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 916
Number of HSP's successfully gapped: 348
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.1 bits)