RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9316
(264 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 77.9 bits (190), Expect = 3e-17
Identities = 29/173 (16%), Positives = 57/173 (32%), Gaps = 31/173 (17%)
Query: 24 QFHLVCKIDDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81
+ + D K ++ + + H S ++++ + +G A+GS D + +F L
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256
Query: 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFD 141
+L G + + + + LL D +WDA
Sbjct: 257 ADQELMTYSHDNIICG-ITSVSFSKSG-RLLLAGYDDFNCNVWDALKAD----------- 303
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
+ V GH V L + ++T S D ++IW+
Sbjct: 304 ---------------RAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
Score = 65.9 bits (159), Expect = 4e-13
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 7/113 (6%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
P +GS D + + SV++S GR L +G D
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYS---HDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 73 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+ ++ K ++ V GH V L + ++T S D ++IW+
Sbjct: 292 FNCNVWDALKA---DRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340
Score = 53.2 bits (126), Expect = 8e-09
Identities = 30/190 (15%), Positives = 60/190 (31%), Gaps = 31/190 (16%)
Query: 37 HFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHT 96
T + H V S++ + D R SG+ D S ++ + + + GH
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHE 226
Query: 97 GSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLN 156
++ +C+ N + +T S D T R++D R + +
Sbjct: 227 SDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMT---------------------- 263
Query: 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENINITW 214
+ + + + + LL D +WDA + +
Sbjct: 264 --YSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320
Query: 215 APNGNTIAVG 224
+G +A G
Sbjct: 321 TDDGMAVATG 330
Score = 49.0 bits (115), Expect = 2e-07
Identities = 32/208 (15%), Positives = 71/208 (34%), Gaps = 24/208 (11%)
Query: 45 KEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 104
+ + H +K++++ W D R L S S D + I+ ++ + V +
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAY 105
Query: 105 HATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGH 164
+ + ++ D I++ +T++ + ++ + + D
Sbjct: 106 A-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDT 164
Query: 165 TGSVDQ------------------LCWHATNPDLLSTASGDKTVRIWDARTQKS-QIIAT 205
T ++ A + L + + D + ++WD R Q
Sbjct: 165 TCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG 224
Query: 206 KGENIN-ITWAPNGNTIAVGNKEDLVTF 232
+IN I + PNGN A G+ +
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRL 252
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 70.5 bits (171), Expect = 1e-14
Identities = 40/203 (19%), Positives = 81/203 (39%), Gaps = 13/203 (6%)
Query: 34 YVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93
+ T +K + H V V + DG +AS S D++V ++ + K + R
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE---LR 182
Query: 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG 153
H V+ + W + + + + K L SGS DK++ ++ +
Sbjct: 183 EHRHVVECISWAPESSYSSISEATGSETKKSG----KPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--SQIIATKGENIN 211
L GH V + +H+ +LS + DKT+R+WD + ++ + A + +
Sbjct: 239 CLMT---LVGHDNWVRGVLFHSGGKFILS-CADDKTLRVWDYKNKRCMKTLNAHEHFVTS 294
Query: 212 ITWAPNGNTIAVGNKEDLVTFID 234
+ + + G+ + V +
Sbjct: 295 LDFHKTAPYVVTGSVDQTVKVWE 317
Score = 61.3 bits (147), Expect = 1e-11
Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 56/202 (27%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD---------- 62
+ + L+ S S V V T E + H V ++W+ +
Sbjct: 152 NQDGTLIASCSNDQTV-----RVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 63 ----------GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 112
G L SGS DK++ ++ + L GH V + +H+ +L
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT---LVGHDNWVRGVLFHSGGKFIL 263
Query: 113 STASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172
S + DKT+R+WD + ++ H V L
Sbjct: 264 S-CADDKTLRVWDYKNKR--------------------------CMKTLNAHEHFVTSLD 296
Query: 173 WHATNPDLLSTASGDKTVRIWD 194
+H T P + T S D+TV++W+
Sbjct: 297 FHKTAP-YVVTGSVDQTVKVWE 317
Score = 55.5 bits (132), Expect = 1e-09
Identities = 35/198 (17%), Positives = 76/198 (38%), Gaps = 27/198 (13%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
H S V V + + S S D ++ ++ + + E +GHT SV + + +
Sbjct: 14 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG---DFERTLKGHTDSVQDISFDHS 70
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIM------------------LASGSFDKSVAIFAL 149
L S ++ + + M + S S DK++ ++ +
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQ--IIATKG 207
+ + GH V + + + L+++ S D+TVR+W T++ + + +
Sbjct: 131 QTGYCVK---TFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRH 186
Query: 208 ENINITWAPNGNTIAVGN 225
I+WAP + ++
Sbjct: 187 VVECISWAPESSYSSISE 204
Score = 47.8 bits (112), Expect = 4e-07
Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 18/162 (11%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGS----------- 139
GH V ++ +H ++ +AS D T+++WD T + L +
Sbjct: 12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70
Query: 140 ----FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDA 195
S + + + N D + +AS DKT+++W+
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130
Query: 196 RTQKSQ--IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
+T + + +G IA + + V V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 69.4 bits (168), Expect = 3e-14
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 41/183 (22%)
Query: 28 VCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLN 87
V + ++ + H V+SV ++ DG+ + SGS D+SV ++ L + +
Sbjct: 231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 290
Query: 88 ---------KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASG 138
EV Y GH V + N + + + S D+ V WD ++
Sbjct: 291 DSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKKSGN-------- 341
Query: 139 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH---ATNPD--LLSTASGDKTVRIW 193
++ +GH SV + + P+ + +T SGD RIW
Sbjct: 342 ------------------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383
Query: 194 DAR 196
+
Sbjct: 384 KYK 386
Score = 57.9 bits (138), Expect = 2e-10
Identities = 32/214 (14%), Positives = 70/214 (32%), Gaps = 28/214 (13%)
Query: 34 YVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK----E 89
+ T DG+ +A+GS D++V ++ + + +
Sbjct: 188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN 247
Query: 90 VVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFAL 149
GH SV + + + + + S D++V++W+ + ++ + +
Sbjct: 248 ESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT------- 299
Query: 150 DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK--------SQ 201
EV Y GH V + N + + + S D+ V WD ++
Sbjct: 300 -------CEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN 351
Query: 202 IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
+ + + P N A G+ +
Sbjct: 352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
Score = 49.0 bits (115), Expect = 2e-07
Identities = 50/264 (18%), Positives = 101/264 (38%), Gaps = 46/264 (17%)
Query: 32 DDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91
D + + + + SV +S DG+ LA+G+ D+ + I+ ++ + +
Sbjct: 102 DSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG 161
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI------------------ 133
+ + + D L + SGD+TVRIWD RT + +
Sbjct: 162 HEQD----IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 217
Query: 134 -MLASGSFDKSVAIFALDKKGDLNK----EVVYRGHTGSVDQLCWHATNPDLLSTASGDK 188
+A+GS D++V ++ + + + GH SV + + + + + S D+
Sbjct: 218 KYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR-DGQSVVSGSLDR 276
Query: 189 TVRIWDARTQKSQ--------------IIATKGENINITWAPNGNTIAVGNKEDLVTFID 234
+V++W+ + ++ I K +++ N I G+K+ V F D
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 336
Query: 235 VVKSLPPRERTLTSRGHLMETRSL 258
L +GH S+
Sbjct: 337 KKS----GNPLLMLQGHRNSVISV 356
Score = 44.4 bits (103), Expect = 7e-06
Identities = 30/224 (13%), Positives = 64/224 (28%), Gaps = 39/224 (17%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALD---------------KKGDLNKEVVYRG 94
H S V V +S DG LA+G +K+ ++ + K +
Sbjct: 61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPS 119
Query: 95 HTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIF------- 147
+ +C+ L + A + I+ S+ F
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179
Query: 148 -------ALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
+ + V + + ++ S D+ VR+WD+ T
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 239
Query: 201 Q---------IIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
K ++ + +G ++ G+ + V ++
Sbjct: 240 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 283
Score = 37.1 bits (84), Expect = 0.001
Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVA------WSCDGRRL 66
+ + + SGS+ V + N + Q H + V SVA +
Sbjct: 317 TQNDEYILSGSKDRGV-----LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVF 371
Query: 67 ASGSFDKSVAIFALDK 82
A+GS D I+ K
Sbjct: 372 ATGSGDCKARIWKYKK 387
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 62.5 bits (150), Expect = 6e-12
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 5/106 (4%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79
P+G + + + D + H S V S+ ++ G+ S D + +
Sbjct: 234 PTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293
Query: 80 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
+ + SV + + T SGDK +++
Sbjct: 294 TPY----GASIFQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYE 334
Score = 47.9 bits (112), Expect = 5e-07
Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 33/161 (20%)
Query: 34 YVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYR 93
+ S++ S+ + G LA G +V + ++K +
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK----PDKYQLH 262
Query: 94 GHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG 153
H V L + + D + W
Sbjct: 263 LHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPY------------------------- 296
Query: 154 DLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
+ + SV + + T SGDK +++
Sbjct: 297 --GASIFQSKESSSVLSCDISV-DDKYIVTGSGDKKATVYE 334
Score = 43.6 bits (101), Expect = 1e-05
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 2/77 (2%)
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN-ITWAPNGN 219
H V L + + D + W S + + ++ + +
Sbjct: 261 LHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDK 319
Query: 220 TIAVGNKEDLVTFIDVV 236
I G+ + T +V+
Sbjct: 320 YIVTGSGDKKATVYEVI 336
Score = 43.6 bits (101), Expect = 1e-05
Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDG 63
P FH + + +P + I + + NT N HG V +V S
Sbjct: 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-------HGEVVCAVTISNPT 63
Query: 64 RRLASGSFDKSVAIFALDKKGDLNK--EVVYRGHTGSVDQLCWHATNPDLL 112
R + +G V ++ + G+ + ++ + L+
Sbjct: 64 RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI 113
Score = 42.1 bits (97), Expect = 4e-05
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQ-AHGSKVHSVAWSC 61
+ H K G F + D+ + + T +Q S V S S
Sbjct: 258 KYQLHLHESCVLSLKFAYCGKWF-VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISV 316
Query: 62 DGRRLASGSFDKSVAIF 78
D + + +GS DK ++
Sbjct: 317 DDKYIVTGSGDKKATVY 333
Score = 32.9 bits (73), Expect = 0.030
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 157 KEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN----- 211
+++ H V + + + G V++WD ++ ++ + +N
Sbjct: 43 RQINTLNHGEVVCAVTISNPTRHVYT--GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYI 100
Query: 212 --ITWAPNGNTIAVG 224
P+G T+ VG
Sbjct: 101 RSCKLLPDGCTLIVG 115
Score = 32.5 bits (72), Expect = 0.042
Identities = 10/132 (7%), Positives = 31/132 (23%), Gaps = 26/132 (19%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+S + DG+ ++ + + +++ H V +
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA---RQINTLNHGEVVCAVTISNPTR 64
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
+ + G V++WD ++ ++ +
Sbjct: 65 HVYT--GGKGCVKVWDISHPGNKSPVSQLDC---------------------LNRDNYIR 101
Query: 170 QLCWHATNPDLL 181
L+
Sbjct: 102 SCKLLPDGCTLI 113
Score = 31.3 bits (69), Expect = 0.12
Identities = 26/243 (10%), Positives = 62/243 (25%), Gaps = 28/243 (11%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIK-------EYQAHGSKVHSVAWSCDGRR 65
S + + +G VK ++ + + + + S DG
Sbjct: 60 SNPTRHVYTGG--------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCT 111
Query: 66 LASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
L G +++I+ L K + + + G+ V
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 126 ARTQKSQIMLASGSFD-------------KSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172
+T Q + + +++ T + L
Sbjct: 172 NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG 231
Query: 173 WHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTF 232
+ T L + + K Q+ + +++ +A G K++L+
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291
Query: 233 IDV 235
Sbjct: 292 WRT 294
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 61.8 bits (148), Expect = 1e-11
Identities = 27/189 (14%), Positives = 58/189 (30%), Gaps = 23/189 (12%)
Query: 47 YQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA 106
+ + AW+ D ++A + V I+ + + H G V + W
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKS-GNKWVQVHELKEHNGQVTGVDWAP 61
Query: 107 TNPDLLSTASGDKTVRIWDARTQKSQ---------------------IMLASGSFDKSVA 145
+ + + T D+ +W + + + A GS + ++
Sbjct: 62 DS-NRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
I +++ D + S N LL+ S D RI+ A ++ +
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180
Query: 206 KGENINITW 214
+
Sbjct: 181 PTPWGSKMP 189
Score = 53.3 bits (126), Expect = 8e-09
Identities = 32/196 (16%), Positives = 55/196 (28%), Gaps = 23/196 (11%)
Query: 29 CKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNK 88
+ + E + VH V +S +G R+A S D +V + DK
Sbjct: 179 PAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK----KM 234
Query: 89 EVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIML----------ASG 138
V T L++ ++ + ++ +
Sbjct: 235 AVATLASETLPLLAVTFITESSLVAAGHDCFP-VLFTYDSAAGKLSFGGRLDVPKQSSQR 293
Query: 139 SFDKSVAIFALDKKGDLNKEV-----VYRGHTGSVDQLCWHA---TNPDLLSTASGDKTV 190
LDKK + H SV Q+ + T D +
Sbjct: 294 GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGM 353
Query: 191 RIWDARTQKSQIIATK 206
IWD R+ +S + K
Sbjct: 354 SIWDVRSLESALKDLK 369
Score = 42.2 bits (97), Expect = 3e-05
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 164 HTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIIAT----KGENINITWAPN 217
H+ V+ + HA N D ++ + V I++ K + G+ + WAP+
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62
Query: 218 GNTIAVG 224
N I
Sbjct: 63 SNRIVTC 69
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 60.2 bits (144), Expect = 3e-11
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 26/163 (15%)
Query: 32 DDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91
D +K +NT +G K R + SGS D ++ ++ D+
Sbjct: 157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW------DIECGAC 210
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
R G + + + + + + D +++WD A ++
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT-------- 262
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
H+G V +L + + ++S D T+ IWD
Sbjct: 263 ---------LVEHSGRVFRLQFD---EFQIVSSSHDDTILIWD 293
Score = 48.7 bits (114), Expect = 2e-07
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 10/128 (7%)
Query: 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDG 63
V + K L D+ ++ ++ G + D
Sbjct: 170 FVRTLNGHKRGIACLQYRDRLVV-SGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 228
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEV------VYRGHTGSVDQLCWHATNPDLLSTASG 117
+R+ SG++D + ++ L D H+G V +L + + ++S
Sbjct: 229 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD---EFQIVSSSH 285
Query: 118 DKTVRIWD 125
D T+ IWD
Sbjct: 286 DDTILIWD 293
Score = 48.7 bits (114), Expect = 2e-07
Identities = 34/207 (16%), Positives = 75/207 (36%), Gaps = 21/207 (10%)
Query: 44 IKEYQAHGSKVHSV-AWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102
++ V D +++ SG D ++ I+ + L + + GHTGSV L
Sbjct: 5 LQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN---TLECKRILTGHTGSVLCL 61
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSF--------------DKSVAIFA 148
+ S+ S + + + I D+S+A++
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121
Query: 149 LDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGE 208
+ D+ V GH +V+ + + + +ASGD+T+++W+ T + +
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK 178
Query: 209 NINITWAPNGNTIAVGNKEDLVTFIDV 235
+ G+ ++ + D+
Sbjct: 179 RGIACLQYRDRLVVSGSSDNTIRLWDI 205
Score = 40.6 bits (93), Expect = 1e-04
Identities = 20/158 (12%), Positives = 50/158 (31%), Gaps = 32/158 (20%)
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQK-----------------SQIMLASGSFDKSVA 145
+ + +ASGD+T+++W+ T + ++ SGS D ++
Sbjct: 142 NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 201
Query: 146 IFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT 205
++ D+ R G + + + + + + D +++WD
Sbjct: 202 LW------DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255
Query: 206 KGENINI---------TWAPNGNTIAVGNKEDLVTFID 234
+ + I + +D + D
Sbjct: 256 GTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 60.2 bits (144), Expect = 3e-11
Identities = 9/93 (9%), Positives = 25/93 (26%)
Query: 42 NDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQ 101
++ QA + + L S+D S+ ++ D + + + +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61
Query: 102 LCWHATNPDLLSTASGDKTVRIWDARTQKSQIM 134
+ + + + D S
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQA 94
Score = 50.2 bits (118), Expect = 7e-08
Identities = 28/173 (16%), Positives = 52/173 (30%), Gaps = 17/173 (9%)
Query: 59 WSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD 118
+ RL G + V F L D N + G + + + + +S D
Sbjct: 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSID 215
Query: 119 KTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 178
V + FD + K+ + T + +P
Sbjct: 216 GRVAVEF--------------FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP 261
Query: 179 D--LLSTASGDKTVRIWDARTQKSQIIATKGENINIT-WAPNGNTIAVGNKED 228
L TA D + W+ +T+K K ++ A + N + + +D
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314
Score = 44.5 bits (103), Expect = 5e-06
Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 39/185 (21%)
Query: 29 CKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGD--- 85
+ + + I+E + A S D VA+ D +GD
Sbjct: 172 VQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231
Query: 86 ------LNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLAS 137
+ T + +P L TA D + W+ +T+K A
Sbjct: 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDART 197
+ D V I A + ++L A+ D T + A
Sbjct: 292 FNEDSVVKI----------------------------ACSDNILCLATSDDTFKTNAAID 323
Query: 198 QKSQI 202
Q ++
Sbjct: 324 QTIEL 328
Score = 40.6 bits (93), Expect = 9e-05
Identities = 6/65 (9%), Positives = 19/65 (29%)
Query: 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
+L S+D S+ ++ D + + + + + + + +
Sbjct: 25 LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV 84
Query: 194 DARTQ 198
D
Sbjct: 85 DLIGS 89
Score = 40.2 bits (92), Expect = 1e-04
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 6/69 (8%)
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS-----QIIATKGENINITW 214
+ + + + + LL S D ++ ++ Q Q + K + +
Sbjct: 6 IEQAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 215 APNGNTIAV 223
N +
Sbjct: 65 IDNTDLQIY 73
Score = 31.7 bits (70), Expect = 0.067
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 32 DDYVKHFNTHNDIKEYQ-AHGSKVHSVAWSCDGRRLASGSFDKSVAIF-ALDKKGDLNKE 89
D + +N K A ++ V +C L + D + A+D+ +LN
Sbjct: 272 DGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIELNAS 331
Query: 90 VVY 92
+Y
Sbjct: 332 SIY 334
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 60.2 bits (144), Expect = 4e-11
Identities = 41/227 (18%), Positives = 80/227 (35%), Gaps = 33/227 (14%)
Query: 24 QFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
+ + D ++ ++ + G DGRR+ SG++D V ++
Sbjct: 108 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVW----- 162
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK------------- 130
D E G +++ + + + S D ++R+WD T
Sbjct: 163 -DPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS 221
Query: 131 ----SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASG 186
+L SG+ D +V I+ + L H + N + + T+S
Sbjct: 222 GMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH---QSAVTCLQFNKNFVITSSD 278
Query: 187 DKTVRIWDARTQK-------SQIIATKGENINITWAPNGNTIAVGNK 226
D TV++WD +T + + + G I + AVG++
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSR 325
Score = 54.8 bits (130), Expect = 2e-09
Identities = 30/196 (15%), Positives = 61/196 (31%), Gaps = 30/196 (15%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
+ + Y L G + +D ++ ++ + G + +
Sbjct: 168 TCLHTLQGHTNRVYSLQFDGIHV-VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK 226
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122
L SG+ D +V I+ + L H + N + + T+S D TV+
Sbjct: 227 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH---QSAVTCLQFNKNFVITSSDDGTVK 283
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLS 182
+WD +T + L + G G V ++ T + +
Sbjct: 284 LWDLKTGEFIRNLVTLESG---------------------GSGGVVWRIRASNTK-LVCA 321
Query: 183 TASGDKT----VRIWD 194
S + T + + D
Sbjct: 322 VGSRNGTEETKLLVLD 337
Score = 49.8 bits (117), Expect = 1e-07
Identities = 40/240 (16%), Positives = 71/240 (29%), Gaps = 52/240 (21%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
K + H V + G R+ SGS D ++ +++ GHTG V
Sbjct: 9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAV---TGKCLRTLVGHTGGVWSSQ 64
Query: 104 WH-------------------------------------ATNPDLLSTASGDKTVRIWDA 126
+ + + S D T+R+WD
Sbjct: 65 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 124
Query: 127 RTQKSQIMLASGS--------FDKSVAIFALDKK---GDLNKEVVYRGHTGSVDQLCWHA 175
T + +L + V A D D E G +++
Sbjct: 125 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQ 184
Query: 176 TNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
+ + + S D ++R+WD T T +++ N + GN + V D+
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244
Score = 40.6 bits (93), Expect = 1e-04
Identities = 28/165 (16%), Positives = 54/165 (32%), Gaps = 13/165 (7%)
Query: 82 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLA----- 136
++G+L V +GH V + + + + S D T+++W A T K L
Sbjct: 2 RRGELKSPKVLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 137 ------SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190
+ S + K + G + + + + S D T+
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATL 119
Query: 191 RIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDV 235
R+WD T + + +G + G + +V D
Sbjct: 120 RVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 164
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 54.9 bits (130), Expect = 2e-09
Identities = 18/206 (8%), Positives = 41/206 (19%), Gaps = 40/206 (19%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYV--KHFNTHNDIKEYQAHGSKVHSVAWS 60
+ + K L S L D V F + +
Sbjct: 177 ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV 236
Query: 61 CDGRRLASGSFDKS-VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASG 117
+G +D + + + D + S+ A
Sbjct: 237 PRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPE 296
Query: 118 DKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN 177
+ +D +T+K ++ L +
Sbjct: 297 KGVLLKYDVKTRKVT------------------------------EVKNNLTDLRL---S 323
Query: 178 PD--LLSTASGDKTVRIWDARTQKSQ 201
D + D + + + +
Sbjct: 324 ADRKTVMVRKDDGKIYTFPLEKPEDE 349
Score = 37.9 bits (86), Expect = 7e-04
Identities = 13/170 (7%), Positives = 34/170 (20%), Gaps = 21/170 (12%)
Query: 49 AHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKG----------------DLNKEVVY 92
++ V D + + + D + +++ +
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99
Query: 93 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK 152
++ + + I D + +A G K +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Query: 153 GDLNKEVVYRGHTGSV-----DQLCWHATNPDLLSTASGDKTVRIWDART 197
++ R + D + L S D
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209
Score = 36.0 bits (81), Expect = 0.003
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 8/83 (9%)
Query: 54 VHSVAWS-CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 112
+ +S DG +A S + F D G V+ + +
Sbjct: 5 KFAEDFSPLDGDLIAFVSRGQ---AFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAF 58
Query: 113 STASGD-KTVRIWDARTQKSQIM 134
+ + + I+D RT K++
Sbjct: 59 IHGTREGDFLGIYDYRTGKAEKF 81
Score = 29.1 bits (63), Expect = 0.50
Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 1/56 (1%)
Query: 173 WHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKED 228
+ + DL++ S + I D + + + + +
Sbjct: 10 FSPLDGDLIAFVSRGQ-AFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 54.9 bits (130), Expect = 3e-09
Identities = 13/131 (9%), Positives = 34/131 (25%), Gaps = 17/131 (12%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
+ H + + + SGD +++WD + ++ D
Sbjct: 9 AGKAHDADIFSVSAC---NSFTVSCSGDGYLKVWDNKLLDNE--------------NPKD 51
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENI 210
K H + + A L++T S + + + +
Sbjct: 52 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 111
Query: 211 NITWAPNGNTI 221
+ ++
Sbjct: 112 LLDSDMKKHSF 122
Score = 52.5 bits (124), Expect = 1e-08
Identities = 32/223 (14%), Positives = 67/223 (30%), Gaps = 24/223 (10%)
Query: 33 DYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVY 92
++ ++ SV S G +A+G + +V I L L
Sbjct: 166 NWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGTVQISELSTLRPLYNFESQ 224
Query: 93 RGHTGSVDQL--CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALD 150
+ + + + LL+ A + + + S S
Sbjct: 225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT-------- 276
Query: 151 KKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT----- 205
+ H+ V L ++ + L +A D +R WD +T+ + I T
Sbjct: 277 --HSSQASLGEFAHSSWVMSLSFNDSGETLC-SAGWDGKLRFWDVKTK--ERITTLNMHC 331
Query: 206 ---KGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLPPRERT 245
+ E + +G+++A D+ +S +
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLN 374
Score = 49.5 bits (116), Expect = 1e-07
Identities = 26/201 (12%), Positives = 48/201 (23%), Gaps = 32/201 (15%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAI---------FALDKKGDLNKEVVYRGHTGS 98
+AH + + SV+ S S D + + DK H
Sbjct: 11 KAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 99 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKE 158
+ + A L++T S + + + + +
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV----------------IFEKLDL 112
Query: 159 VVYRGHTGSVDQLCWHA----TNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITW 214
+ S L W A L T IW + + + T
Sbjct: 113 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW-SPTL 171
Query: 215 APNGNTIAVGNKEDLVTFIDV 235
G + T +D+
Sbjct: 172 ELQGTVESPMTPSQFATSVDI 192
Score = 39.1 bits (89), Expect = 3e-04
Identities = 22/176 (12%), Positives = 51/176 (28%), Gaps = 28/176 (15%)
Query: 36 KHFNTHNDIKEYQAHGSKVHSVAW-------SCDGRRLASGSFDKSVAIFALDKKGDLNK 88
+ N + + H S +H V + + +A+ SF + + + ++ + K
Sbjct: 45 DNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 104
Query: 89 EVVYRG-------HTGSVDQLCWHA----TNPDLLSTASGDKTVRIWDARTQKSQIMLAS 137
+ + S L W A L T IW + +
Sbjct: 105 VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 164
Query: 138 GSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
++ ++ + + + L++T + TV+I
Sbjct: 165 LNWSPTLELQ--------GTVESPMTPSQFATSVDISERG--LIATGFNNGTVQIS 210
Score = 39.1 bits (89), Expect = 4e-04
Identities = 27/203 (13%), Positives = 55/203 (27%), Gaps = 28/203 (13%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFD 72
S + + + ++ + + + SV +S G LA
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252
Query: 73 KSVAIFAL-------------DKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDK 119
S L + H+ V L ++ + L +A D
Sbjct: 253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC-SAGWDG 311
Query: 120 TVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW------ 173
+R WD +T++ L D + L + V + +
Sbjct: 312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA-----EPGVFDVKFLKKGWR 366
Query: 174 ---HATNPDLLSTASGDKTVRIW 193
A + L D+++R +
Sbjct: 367 SGMGADLNESLCCVCLDRSIRWF 389
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 51.8 bits (122), Expect = 2e-08
Identities = 23/172 (13%), Positives = 42/172 (24%), Gaps = 24/172 (13%)
Query: 23 SQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDK 82
+ + F + + GS V V +S D K
Sbjct: 177 TVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 236
Query: 83 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDK 142
G+ K + + +T D T+R+WD T
Sbjct: 237 SGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT-------------- 282
Query: 143 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
++ Q+ AT + + S D T+ ++
Sbjct: 283 ----------SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324
Score = 39.1 bits (89), Expect = 3e-04
Identities = 14/146 (9%), Positives = 36/146 (24%), Gaps = 21/146 (14%)
Query: 52 SKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGH-TGSVDQLCWH-ATNP 109
+ +++ +A + D + V + GH + V + +
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
L + V +W K + ++N + ++ G +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSV------------------EVNVKSEFQVLAGPIS 119
Query: 170 QLCWHATNP-DLLSTASGDKTVRIWD 194
+ W + D
Sbjct: 120 DISWDFEGRRLCVVGEGRDNFGVFIS 145
Score = 36.8 bits (83), Expect = 0.002
Identities = 33/248 (13%), Positives = 65/248 (26%), Gaps = 29/248 (11%)
Query: 17 KLLPSGSQFHLVCKI---DDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDK 73
+ L SG + V D + N E+Q + ++W +GRRL +
Sbjct: 78 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGR 137
Query: 74 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQI 133
+ + V + ++ V + S
Sbjct: 138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197
Query: 134 ML---ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHA--------------- 175
GSF + V + + + +
Sbjct: 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFA 257
Query: 176 ---TNPDLLSTASGDKTVRIWDARTQKS----QIIATKGENINITWAPNGN-TIAVGNKE 227
+ +T D T+R+WD T K + + N + GN I + +
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317
Query: 228 DLVTFIDV 235
+ F ++
Sbjct: 318 GTLNFYEL 325
Score = 29.5 bits (64), Expect = 0.39
Identities = 7/81 (8%), Positives = 22/81 (27%), Gaps = 8/81 (9%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSC- 61
+ + + + D T ++++ ++ +
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWD-----VTTSKCVQKWTLDKQQLGNQQVGVV 304
Query: 62 --DGRRLASGSFDKSVAIFAL 80
R+ S S D ++ + L
Sbjct: 305 ATGNGRIISLSLDGTLNFYEL 325
Score = 28.7 bits (62), Expect = 0.63
Identities = 8/70 (11%), Positives = 16/70 (22%), Gaps = 7/70 (10%)
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIAT----KGENIN-ITWAP 216
L + T + VR D K + + + ++P
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 217 --NGNTIAVG 224
+ G
Sbjct: 74 IKGSQYLCSG 83
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 50.3 bits (118), Expect = 6e-08
Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 3/123 (2%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
V G ++ D K +D + AH V + WS D
Sbjct: 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 249
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122
G ++AS S DK++ I+ + T DQ L + S + +
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEK---TIPVGTRIEDQQLGIIWTKQALVSISANGFIN 306
Query: 123 IWD 125
+
Sbjct: 307 FVN 309
Score = 44.9 bits (104), Expect = 3e-06
Identities = 20/173 (11%), Positives = 39/173 (22%), Gaps = 28/173 (16%)
Query: 24 QFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
+ + ++G V +D
Sbjct: 163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDARTQKSQIMLASGSFD 141
E + + +PD +++AS DKT++IW+ T K +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE--------- 273
Query: 142 KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
T DQ L + S + + +
Sbjct: 274 -----------------KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Score = 43.4 bits (100), Expect = 1e-05
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Query: 53 KVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLL 112
+ + G ++ + SV + L +Y H+ +
Sbjct: 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVG---SLTDTEIYTEHSHQTTVAKTSP-SGYYC 73
Query: 113 STASGDKTVRIWDARTQKSQIM 134
++ VRIWD +
Sbjct: 74 ASGDVHGNVRIWDTTQTTHILK 95
Score = 39.9 bits (91), Expect = 2e-04
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 1/86 (1%)
Query: 20 PSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFA 79
P+G + Y + D + Y H + S G ASG +V
Sbjct: 27 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV-RIW 85
Query: 80 LDKKGDLNKEVVYRGHTGSVDQLCWH 105
+ + +G V + W
Sbjct: 86 DTTQTTHILKTTIPVFSGPVKDISWD 111
Score = 38.0 bits (86), Expect = 8e-04
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQ---IIATKGENINITWAPNGNTIAVGNKED 228
+ + +++AS DKT++IW+ T K + + T+ E+ + + +
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303
Query: 229 LVTFID 234
+ F++
Sbjct: 304 FINFVN 309
Score = 32.6 bits (72), Expect = 0.041
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 5/60 (8%)
Query: 134 MLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW 193
+ + SV + L +Y H+ + ++ VRIW
Sbjct: 31 KIQYCN-GTSVYTVPVG---SLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIW 85
Score = 28.3 bits (61), Expect = 1.0
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALD 81
+ + + L S S + + +
Sbjct: 280 TRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 49.2 bits (115), Expect = 1e-07
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+ H + +++ S DG+ L S + + + D ++ V H + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSW--DISTGISNRVFPDVHATMITGIK 62
Query: 104 WHATNPDLLSTASGDKTVRIWDARTQKSQIM 134
+ L T S D +++ A
Sbjct: 63 TTSKGD--LFTVSWDDHLKVVPAGGSGVDSS 91
Score = 44.6 bits (103), Expect = 6e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT 213
V GH ++ L A + L +A + + WD T S + IT
Sbjct: 7 VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT 59
Score = 43.8 bits (101), Expect = 9e-06
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASG 138
V GH ++ L A + L +A + + WD T S +
Sbjct: 7 VRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDV 53
Score = 38.4 bits (87), Expect = 5e-04
Identities = 16/171 (9%), Positives = 40/171 (23%), Gaps = 25/171 (14%)
Query: 24 QFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
+V + + + + + + I
Sbjct: 151 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 210
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKS 143
+ + + L+T S D +V +W+ ++ G+
Sbjct: 211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGA---- 266
Query: 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
SV+ + W N + +A D ++ W+
Sbjct: 267 -------------------HAMSSVNSVIWL--NETTIVSAGQDSNIKFWN 296
Score = 32.3 bits (71), Expect = 0.049
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 172 CWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGEN----INITWAPNGNTIAVGNKE 227
+ + L+T S D +V +W+ I KG + +N N TI ++
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289
Query: 228 DLVTFIDV 235
+ F +V
Sbjct: 290 SNIKFWNV 297
Score = 31.1 bits (68), Expect = 0.13
Identities = 5/37 (13%), Positives = 12/37 (32%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFAL 80
I AH + + + S D ++ + +
Sbjct: 261 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 49.4 bits (116), Expect = 1e-07
Identities = 21/205 (10%), Positives = 51/205 (24%), Gaps = 12/205 (5%)
Query: 34 YVKHFNTHNDIKEYQAHGSK--VHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV 91
V + K + V+ + + DG +G + + L
Sbjct: 125 EVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNW 184
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
R + D L + + ++ AR + + A+ L
Sbjct: 185 NRKGYSAPDVLYFWPHQSP-----RHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKT 239
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENIN 211
K + + D + +D + +K A
Sbjct: 240 ----GKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYY 295
Query: 212 -ITWAPNGNTIAVGNKEDLVTFIDV 235
+ + G+ + +G + + +
Sbjct: 296 CVAFDKKGDKLYLGGTFNDLAVFNP 320
Score = 35.9 bits (81), Expect = 0.004
Identities = 13/145 (8%), Positives = 39/145 (26%), Gaps = 10/145 (6%)
Query: 1 NVCPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWS 60
+ ++ + + + + +D +T +E+ + S
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT----QEFADLTELYFTGLRS 260
Query: 61 CDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKT 120
G + +A + L + K + + + + D L
Sbjct: 261 PKDPNQIYGVLN-RLAKYDLKQ----RKLIKAANLDHTYYCVAFDKKG-DKLYLGGTFND 314
Query: 121 VRIWDARTQKSQIMLASGSFDKSVA 145
+ +++ T + + D S
Sbjct: 315 LAVFNPDTLEKVKNIKLPGGDMSTT 339
Score = 34.3 bits (77), Expect = 0.013
Identities = 21/260 (8%), Positives = 56/260 (21%), Gaps = 25/260 (9%)
Query: 19 LPSGSQFHLVCKIDDYVKHFNTHND--IKEYQ-AHGSKVHSVAWSCDGRRL-ASGSFDKS 74
L +G ++ +V + + + +D K + + D R +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 75 VAIFALDK---KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTA-----------SGDKT 120
+ LD N V S+ ++ +T
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123
Query: 121 VRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDL 180
+ ++ + + + V + G L G T
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLY-------VAGPDIYKMDVKTGKYT 176
Query: 181 LSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSLP 240
++ + + + A + + S+
Sbjct: 177 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236
Query: 241 PRERTLTSRGHLMETRSLWG 260
+ ++ T +
Sbjct: 237 LKTGKTHTQEFADLTELYFT 256
Score = 33.2 bits (74), Expect = 0.028
Identities = 9/94 (9%), Positives = 20/94 (21%), Gaps = 8/94 (8%)
Query: 57 VAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD---LLS 113
A + ++ ++ + + + V PD
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVA-----SDTVYKSCVMPDKFGPGTAMMAPDNRTAYV 56
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIF 147
+ + D T K+ S V
Sbjct: 57 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS 90
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 48.6 bits (114), Expect = 3e-07
Identities = 25/213 (11%), Positives = 52/213 (24%), Gaps = 14/213 (6%)
Query: 25 FHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSV-AIFALDKK 83
H + + ++ ++ +AW+ DG +L D V A
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKS 143
D + D L + + D ++
Sbjct: 168 EDKPIQSWEAETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDP------ADPTAYRTG 220
Query: 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQII 203
+ L+ E+ R A NP + +D S
Sbjct: 221 LLTMDLE-----TGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKR 275
Query: 204 ATKGENIN-ITWAPNGNTIAVGNKEDLVTFIDV 235
+ + + +G+T+ +G + D
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
Score = 35.9 bits (81), Expect = 0.004
Identities = 8/76 (10%), Positives = 20/76 (26%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
+ + + + ++ + N + +SV S D
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTD 290
Query: 63 GRRLASGSFDKSVAIF 78
G + G +A +
Sbjct: 291 GSTVWLGGALGDLAAY 306
Score = 32.5 bits (72), Expect = 0.048
Identities = 7/109 (6%), Positives = 23/109 (21%), Gaps = 24/109 (22%)
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD 169
D + + + + D ++K + +
Sbjct: 2 DYILAPARPDKLVVIDTEKMA------------------------VDKVITIADAGPTPM 37
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNG 218
+T + +++ D T ++ + G
Sbjct: 38 VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86
Score = 29.0 bits (63), Expect = 0.60
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 50 HGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALD 81
G + GR A+ + +S+ L
Sbjct: 32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64
Score = 29.0 bits (63), Expect = 0.64
Identities = 9/81 (11%), Positives = 22/81 (27%), Gaps = 5/81 (6%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
V + + + + + + F L+K N + S +
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEK----NASIKRVPLPHSYYSVNVSTDG- 291
Query: 110 DLLSTASGDKTVRIWDARTQK 130
+ + +DA T +
Sbjct: 292 STVWLGGALGDLAAYDAETLE 312
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 43.6 bits (101), Expect = 1e-05
Identities = 31/218 (14%), Positives = 62/218 (28%), Gaps = 15/218 (6%)
Query: 4 PVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDG 63
F T + GS + + + +T E + ++ A+S
Sbjct: 150 CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL---INHPAYSQKA 206
Query: 64 RRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRI 123
RL ++ + L GD T + W ++
Sbjct: 207 GRLVWPTYTGKIHQIDLSS-GDAKFLPAVEALTEAERADGWRPGGWQQVA-YHRALDRIY 264
Query: 124 WDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLLS 182
+ + + V + + + +D + P L +
Sbjct: 265 LLVDQRD---EWRHKTASRFVVVLDAKT----GERLAKFEMGHEIDSINVSQDEKPLLYA 317
Query: 183 TASGDKTVRIWDARTQKS-QIIATKGENIN-ITWAPNG 218
++GDKT+ I DA + + + + G IT A G
Sbjct: 318 LSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
Score = 38.2 bits (87), Expect = 6e-04
Identities = 19/146 (13%), Positives = 43/146 (29%), Gaps = 20/146 (13%)
Query: 2 VCPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSC 61
+ H S + L + + +ID + +A + W
Sbjct: 192 EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL---SSGDAKFLPAVEALTEAERADGWRP 248
Query: 62 DGRRLASGSFDKSVAIFALDKKGDL----------------NKEVVYRGHTGSVDQLCWH 105
G + + +D++ + + + +D +
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVS 308
Query: 106 AT-NPDLLSTASGDKTVRIWDARTQK 130
P L + ++GDKT+ I DA + +
Sbjct: 309 QDEKPLLYALSTGDKTLYIHDAESGE 334
Score = 31.7 bits (70), Expect = 0.076
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 182 STASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGN 225
+ + + D + + G N A +G+ IA +
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHAS 65
Score = 26.7 bits (57), Expect = 3.1
Identities = 25/201 (12%), Positives = 44/201 (21%), Gaps = 33/201 (16%)
Query: 50 HGSKVHSVAWSCDGRRLA----------SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 99
G + + + DG +A G V +F + V
Sbjct: 45 DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104
Query: 100 DQLCWH-----ATNPDLLSTASGDKTVRIWDARTQKSQIMLASG---------------- 138
W L S V + D + + ML
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMH 164
Query: 139 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD--LLSTASGDKTVRIWDAR 196
D S+A A +G H + A + L + + D
Sbjct: 165 CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS 224
Query: 197 TQKSQIIATKGENINITWAPN 217
+ ++ + A
Sbjct: 225 SGDAKFLPAVEALTEAERADG 245
Score = 26.3 bits (56), Expect = 4.5
Identities = 11/122 (9%), Positives = 27/122 (22%), Gaps = 19/122 (15%)
Query: 113 STASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 172
+ + + D + M+ G F + A D +
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDGG-FLPNPV-VADDGS-----------------FIA 62
Query: 173 WHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTF 232
+T ++ V ++D T + ++ + F
Sbjct: 63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLF 122
Query: 233 ID 234
Sbjct: 123 YQ 124
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 43.0 bits (100), Expect = 2e-05
Identities = 16/225 (7%), Positives = 52/225 (23%), Gaps = 24/225 (10%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCD 62
+ Y S + A + +
Sbjct: 166 SCFHIHPGAAATHYLGSCPASLAASDL---AAAPAAAGIVGAQCTGAQNCSSQAAQANYP 222
Query: 63 GRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVR 122
G + + + G+ + + +++ +
Sbjct: 223 GMLVWAVASSILQGDIPAAGATMKAA---IDGNESGRKADNFRSAGFQMVAKLKNTDGIM 279
Query: 123 IWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT-NPDLL 181
I +S + ++ + + D + D
Sbjct: 280 ILTVEHSRS-------CLAAAENTSSVTASV--GQTSGPISNGHDSDAIIAAQDGASDNY 330
Query: 182 STASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
+ ++G + + I+DA + + ++ + + P ++V N+
Sbjct: 331 ANSAGTEVLDIYDAASDQ--DQSS----VELDKGPES--LSVQNE 367
Score = 27.3 bits (59), Expect = 2.3
Identities = 12/86 (13%), Positives = 22/86 (25%), Gaps = 10/86 (11%)
Query: 185 SGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAV----------GNKEDLVTFID 234
+G + A + + +G+ A+ G + D V D
Sbjct: 43 AGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFD 102
Query: 235 VVKSLPPRERTLTSRGHLMETRSLWG 260
V LP + L +
Sbjct: 103 PVTFLPIADIELPDAPRFSVGPRVHI 128
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 42.6 bits (98), Expect = 2e-05
Identities = 26/170 (15%), Positives = 55/170 (32%), Gaps = 31/170 (18%)
Query: 48 QAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHAT 107
+ H + V + + + +G+ DK + ++ K + GH G V L +
Sbjct: 9 RGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINK---KFLLQLSGHDGGVWALKYA-- 62
Query: 108 NPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGS 167
+ +L + S D+TVR+WD + + ++
Sbjct: 63 HGGILVSGSTDRTVRVWDIKKGCCTHV-------------------------FEGHNSTV 97
Query: 168 VDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPN 217
N + T S D T+ +W + S + + + +
Sbjct: 98 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 147
Score = 38.7 bits (88), Expect = 4e-04
Identities = 8/103 (7%), Positives = 26/103 (25%), Gaps = 28/103 (27%)
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
+ H ++ + + ++L + S + I++ R+ K
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV------------------- 316
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
+ + + L++ D +
Sbjct: 317 ------HANILKDADQIWSVNFKGKT--LVAAVEKDGQSFLEI 351
Score = 37.2 bits (84), Expect = 0.001
Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 18/189 (9%)
Query: 13 SPEYKLLPSGSQFHLVCKIDDYVKHFNTHND--IKEYQAHGSKVHSVAWSCDGRRLASGS 70
E + +G+ D ++ +++ N + + H V ++ ++ G L SGS
Sbjct: 20 QFEDNYVITGAD-------DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS 71
Query: 71 FDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130
D++V ++ D K V ++ N + T S D T+ +W +
Sbjct: 72 TDRTVRVW--DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129
Query: 131 SQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTV 190
S + + + + + V RGH SV + + +++ + S D T+
Sbjct: 130 S---VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV---RTVSGHGNIVVSGSYDNTL 183
Query: 191 RIWDARTQK 199
+WD K
Sbjct: 184 IVWDVAQMK 192
Score = 34.1 bits (76), Expect = 0.014
Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT-WAPNGN 219
+ H ++ + + ++L + S + I++ R+ K + I G
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 335
Query: 220 TIAVGNKEDLVTFIDV 235
T+ ++D +F+++
Sbjct: 336 TLVAAVEKDGQSFLEI 351
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 42.3 bits (97), Expect = 3e-05
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 27/94 (28%)
Query: 101 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVV 160
DL++T S D + I+ + I
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK-------------------------A 253
Query: 161 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
H V+ L W P L ++ D ++ W+
Sbjct: 254 LNAHKDGVNNLLWE--TPSTLVSSGADACIKRWN 285
Score = 37.2 bits (84), Expect = 0.001
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 131
GH + L + L + S D + W + +
Sbjct: 8 TISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
Score = 37.2 bits (84), Expect = 0.001
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 5/41 (12%)
Query: 160 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS 200
GH + L + L + S D + W + +
Sbjct: 8 TISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQ 43
Score = 34.9 bits (78), Expect = 0.006
Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLC 103
+K H + ++ + L SGS+D + ++ +++ H+ + L
Sbjct: 6 LKTISGHNKGITALTVN----PLISGSYDGRIMEWSSSS--------MHQDHSNLIVSLD 53
Query: 104 WH 105
Sbjct: 54 NS 55
Score = 34.2 bits (76), Expect = 0.012
Identities = 11/79 (13%), Positives = 20/79 (25%), Gaps = 4/79 (5%)
Query: 3 CPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHND---IKEYQAHGSKVHSVAW 59
P +D + ++ IK AH V+++ W
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266
Query: 60 SCDGRRLASGSFDKSVAIF 78
L S D + +
Sbjct: 267 ETPS-TLVSSGADACIKRW 284
Score = 29.9 bits (65), Expect = 0.30
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 4/70 (5%)
Query: 170 QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINIT---WAPNGNTIAVGNK 226
DL++T S D + I+ + I A + W T+
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGA 277
Query: 227 EDLVTFIDVV 236
+ + +VV
Sbjct: 278 DACIKRWNVV 287
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 41.7 bits (97), Expect = 6e-05
Identities = 21/183 (11%), Positives = 46/183 (25%), Gaps = 20/183 (10%)
Query: 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALD-KKGDLNKEV-VYRGHTGSVDQLCWHATN 108
G VH S GR L D V + L K+ E+ + +
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120
Query: 109 PDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 168
++ A I D T + + + ++ + + + + H
Sbjct: 121 KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA----AILASHYR-- 174
Query: 169 DQLCWHATNPDLLSTASGDKTVRIWDARTQ---KSQIIATKGENINITWAPNGNTIAVGN 225
P+ + + + D K+ I+ + + +
Sbjct: 175 ---------PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAA 225
Query: 226 KED 228
Sbjct: 226 NAR 228
Score = 33.2 bits (75), Expect = 0.027
Identities = 15/122 (12%), Positives = 28/122 (22%), Gaps = 35/122 (28%)
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
T + + D T + + +L +G +V I L G
Sbjct: 37 TLRDAGQIALIDGSTYEIKTVLDTG---YAVHISRLSASG-------------------- 73
Query: 174 HATNPDLLSTASGDKTVRIWDARTQKSQIIAT-------KGENINITWAPNGNTIAVGNK 226
L D V + D ++ +A + + G
Sbjct: 74 -----RYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY 128
Query: 227 ED 228
Sbjct: 129 WP 130
Score = 28.2 bits (62), Expect = 1.2
Identities = 13/117 (11%), Positives = 27/117 (23%), Gaps = 6/117 (5%)
Query: 20 PSGSQFHLVCKIDDYVKHFNT---HNDIKEYQAHGSKVHSVAWSCDGRRLASG---SFDK 73
+F + K + + +N + +H R +
Sbjct: 172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKL 231
Query: 74 SVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQK 130
V K + H G P ++ GD +V + +
Sbjct: 232 VVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG 288
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 37.3 bits (85), Expect = 0.001
Identities = 19/214 (8%), Positives = 36/214 (16%), Gaps = 42/214 (19%)
Query: 50 HGSKVHSVAWSCDGRRLA----------SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSV 99
G A + D + G+ V I L+
Sbjct: 15 DGGFGPGFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNT---TLDHAGEIVIPAKHA 71
Query: 100 DQLCWHATNPD-----LLSTASGDKTVRIWDARTQK------------------SQIMLA 136
+ L A+ +
Sbjct: 72 QHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEIDTAACVLAYPAGDDRFT 131
Query: 137 SGSFD-KSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATN-PDLLSTASGDKTVRIWD 194
+ K++ + + + + D +A+ + VR D
Sbjct: 132 ALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSAD 191
Query: 195 ARTQKSQIIAT----KGENINITWAPNGNTIAVG 224
K W P G
Sbjct: 192 FSGDKPAFGKPWSLLTDAERAEGWRPGGMQQTAV 225
Score = 25.7 bits (55), Expect = 6.8
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 191 RIWDARTQKSQIIATKGENINITWAPNGNTIAVGN 225
++DA +K G AP+ V
Sbjct: 1 YVYDADAKKLLGQIDGGFGPGFAIAPDRKASVVAT 35
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 36.8 bits (83), Expect = 0.002
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 183 TASGDKTVRIWDARTQK-SQIIATKGENINITWAPNGNTIAVGNKED-LVTFIDV 235
S + + D + K + I + +P+G + V N V+ ID
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Score = 34.1 bits (76), Expect = 0.013
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Query: 24 QFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIF 78
++ + N I G +A + DG+++ + SF +V++
Sbjct: 216 VTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVI 271
Score = 32.2 bits (71), Expect = 0.047
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 6/70 (8%)
Query: 156 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWA 215
NK + + S TV + D T I AT + +
Sbjct: 234 NKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNT--ITAT----MAVGKN 287
Query: 216 PNGNTIAVGN 225
P + +G+
Sbjct: 288 PYASGQFIGS 297
Score = 31.8 bits (70), Expect = 0.067
Identities = 10/61 (16%), Positives = 15/61 (24%)
Query: 87 NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAI 146
NK + + S TV + D T +A G +
Sbjct: 234 NKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPYASGQ 293
Query: 147 F 147
F
Sbjct: 294 F 294
Score = 30.2 bits (66), Expect = 0.23
Identities = 8/57 (14%), Positives = 14/57 (24%), Gaps = 1/57 (1%)
Query: 50 HGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWH 105
GS S DG ++ + + V+I + G
Sbjct: 30 VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGK 86
Score = 28.7 bits (62), Expect = 0.69
Identities = 12/87 (13%), Positives = 19/87 (21%), Gaps = 33/87 (37%)
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
S + + D + K + GS I
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVI--------------------------- 39
Query: 174 HATNPD---LLSTASGDKTVRIWDART 197
+PD + + V I D T
Sbjct: 40 ---SPDGTKVYVANAHSNDVSIIDTAT 63
Score = 26.0 bits (55), Expect = 5.2
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 6/68 (8%)
Query: 68 SGSFDKSVAIFALDKKGDLNKEVVYRGHTGS-VDQLCWHATNPDLLSTASGDKTVRIWDA 126
+ S ++++ + + +V GS + + V I D
Sbjct: 7 ANSESDNISVIDVT-----SNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDT 61
Query: 127 RTQKSQIM 134
T
Sbjct: 62 ATNNVIAT 69
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 36.3 bits (82), Expect = 0.003
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 34 YVKHFNTHNDIKEYQ--AHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEV 90
+V + N + Q +V + S D R L + V + +
Sbjct: 17 HVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA 76
Query: 91 VYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 125
GS+ + + + V +
Sbjct: 77 AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR 111
Score = 32.5 bits (72), Expect = 0.046
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 44 IKEYQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDLNKEV 90
+ +Q ++ G+ L A+G ++++ + + L E
Sbjct: 268 KEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEK 315
Score = 30.6 bits (67), Expect = 0.16
Identities = 6/50 (12%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 183 TASGDKTVRIWDARTQKS----QIIATKGENINITWAPNGNTIAVGNKED 228
+ + + +W+ + + Q++ G+ + +P+ + VG + +
Sbjct: 9 ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE 58
Score = 25.9 bits (55), Expect = 5.4
Identities = 10/200 (5%), Positives = 46/200 (23%), Gaps = 9/200 (4%)
Query: 24 QFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKK 83
+ + + + + ++ + + +G F + +
Sbjct: 137 PDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 196
Query: 84 GDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKS 143
+ + +V + + D T + + A
Sbjct: 197 LNSSVDVWELKDPHGNIECVQTLDM---MPENFSDTRWAADIHITPDGRHLYACDRTASL 253
Query: 144 VAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIW--DARTQKSQ 201
+ +F++ + G + + ++ + L++ + ++
Sbjct: 254 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313
Query: 202 IIATKGENINITWAPNGNTI 221
+ P +
Sbjct: 314 EKGR----YAVGQGPMWVVV 329
Score = 25.9 bits (55), Expect = 6.2
Identities = 9/86 (10%), Positives = 19/86 (22%), Gaps = 24/86 (27%)
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
+ + + +W+ L+ +G L V G V +
Sbjct: 9 ASPESQQIHVWN-----------------------LNHEGALTLTQVV-DVPGQVQPMVV 44
Query: 174 HATNPDLLSTASGDKTVRIWDARTQK 199
L + V +
Sbjct: 45 SPDKRYLYVGVRPEFRVLAYRIAPDD 70
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 34.2 bits (77), Expect = 0.012
Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 2/82 (2%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVV--YRGHTGSVDQLCWHAT 107
G VH S GR L D + + L K +
Sbjct: 60 TGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYE 119
Query: 108 NPDLLSTASGDKTVRIWDARTQ 129
+ ++ A I D T
Sbjct: 120 DRYTIAGAYWPPQFAIMDGETL 141
Score = 31.5 bits (70), Expect = 0.092
Identities = 9/124 (7%), Positives = 25/124 (20%), Gaps = 39/124 (31%)
Query: 114 TASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCW 173
T + + D ++K ++ +G +
Sbjct: 37 TLRDAGQIALVDGDSKKIVKVIDTGYAVHISRM--------------------------- 69
Query: 174 HATNPD--LLSTASGDKTVRIWDARTQKSQIIAT-------KGENINITWAPNGNTIAVG 224
+ L D + + D ++ +A + + G
Sbjct: 70 ---SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG 126
Query: 225 NKED 228
Sbjct: 127 AYWP 130
Score = 28.8 bits (63), Expect = 0.64
Identities = 20/147 (13%), Positives = 37/147 (25%), Gaps = 19/147 (12%)
Query: 2 VCPVIQFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSC 61
H P + G + D + E Q G +
Sbjct: 254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 313
Query: 62 DGRRLA-------SGSFDKSVAIFALDKKGDLNKEVV----YRGHTGSVDQLCWHATNPD 110
L +SVA+F L K D +V+ + ++ N
Sbjct: 314 KSSHLYVDTTFNPDARISQSVAVFDL-KNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR 372
Query: 111 -------LLSTASGDKTVRIWDARTQK 130
+ + + + + D +T K
Sbjct: 373 GDEVWFSVWNGKNDSSALVVVDDKTLK 399
Score = 26.5 bits (57), Expect = 3.6
Identities = 23/174 (13%), Positives = 48/174 (27%), Gaps = 27/174 (15%)
Query: 34 YVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDL--NKEVV 91
V + + N + W R + + + + K L +V
Sbjct: 189 LVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVG 248
Query: 92 YRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK 151
H G P ++ GD ++ + G+ K+ +A K
Sbjct: 249 KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLI-------------GTDPKNHPQYAWKK 295
Query: 152 KGDLNKEVVYRGHTGSVDQLCWH------ATNPDLLSTASGDKTVRIWDARTQK 199
+L +G G + H + A ++V ++D +
Sbjct: 296 VAEL------QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 343
Score = 26.5 bits (57), Expect = 4.3
Identities = 29/183 (15%), Positives = 53/183 (28%), Gaps = 39/183 (21%)
Query: 30 KIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKE 89
+ D K + V S + DG G+ K+ +A K +L
Sbjct: 243 ALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL--- 299
Query: 90 VVYRGHTGSVDQLCWH------ATNPDLLSTASGDKTVRIWDARTQKS-------QIMLA 136
+G G + H + A ++V ++D + +
Sbjct: 300 ---QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD 356
Query: 137 SGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDAR 196
G K V +K+GD EV + W + + + + D +
Sbjct: 357 LGEGAKRVVQPEYNKRGD---EVWFS---------VW--------NGKNDSSALVVVDDK 396
Query: 197 TQK 199
T K
Sbjct: 397 TLK 399
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing
enzyme {Neurospora crassa [TaxId: 5141]}
Length = 365
Score = 31.7 bits (71), Expect = 0.079
Identities = 18/194 (9%), Positives = 47/194 (24%), Gaps = 12/194 (6%)
Query: 28 VCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRL-ASGSFDKSVAIFALDKKGDL 86
V + + K + EYQ + +H + + L ++ + G++
Sbjct: 123 VFSVSETGKLEKNVQNY-EYQE-NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEV 180
Query: 87 --NKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSV 144
V + H T L + + + + SF
Sbjct: 181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240
Query: 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIA 204
D + + +++ +K K +
Sbjct: 241 PGIPDRDPET-------GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG 293
Query: 205 TKGENINITWAPNG 218
+ + + ++ P
Sbjct: 294 SIEKQLFLSPTPTS 307
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 29.6 bits (65), Expect = 0.38
Identities = 21/180 (11%), Positives = 53/180 (29%), Gaps = 9/180 (5%)
Query: 51 GSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPD 110
+ + ++A + DG + I ++ G + ++ G V L + +
Sbjct: 27 NTFLENLASAPDGTIFVTNHEVG--EIVSITPDG---NQQIHATVEGKVSGLAFTSNGDL 81
Query: 111 LLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVD- 169
+ + + D + ++ + L + + YRG +D
Sbjct: 82 VATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDV 141
Query: 170 ---QLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNK 226
+P L + S + + + + E + + P +T G
Sbjct: 142 VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP 201
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 470
Score = 28.5 bits (62), Expect = 0.85
Identities = 37/268 (13%), Positives = 69/268 (25%), Gaps = 29/268 (10%)
Query: 7 QFHTPKSPEYKLLPSGSQFHLVCKIDDYVKHFNTHNDIKEYQAHGSKVHSVAWSCDGRRL 66
+ K+ P+ + + +N D + S ++ WS +G L
Sbjct: 127 AYVWNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185
Query: 67 ASGSFDKS-VAIFALDKKGDLNKE----------------VVYRGHTGSVDQLCWHA--- 106
A F+ + V + D + + + + D L
Sbjct: 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT 245
Query: 107 ----TNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKK-GDLNKEVVY 161
T P + W + + S L + I D+ G N V
Sbjct: 246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR 305
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTI 221
+ S + T G+ +I I + + + T+ G
Sbjct: 306 QHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWE 365
Query: 222 ---AVGNKEDLVTFIDVVKSLPPRERTL 246
D + +I P R L
Sbjct: 366 VIGIEALTSDYLYYISNEYKGMPGGRNL 393
Score = 25.5 bits (54), Expect = 7.7
Identities = 15/153 (9%), Positives = 34/153 (22%), Gaps = 7/153 (4%)
Query: 43 DIKEYQAHGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQL 102
+ + G ++ + S DG+ + + +Y + +
Sbjct: 53 ENSTFDEFGHSINDYSISPDGQFILLEYNYVK--QWRHSYTASY---DIYDLNKRQLITE 107
Query: 103 CWHATNPDLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDK-KGDLNKEVVY 161
N T S + + + + D + V
Sbjct: 108 -ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYE 166
Query: 162 RGHTGSVDQLCWHATNPDLLSTASGDKTVRIWD 194
+ L W L D V + +
Sbjct: 167 EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIE 199
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 111
Score = 27.3 bits (60), Expect = 0.86
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 10/74 (13%)
Query: 139 SFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQ 198
+ VA+ L +L ++ + + +L + + +++ D
Sbjct: 38 QLVQQVALGTLLHCQNLKDQL-----STYSKGFLNSSELSELPAGPEREGSLK--DQLAL 90
Query: 199 KSQIIATKGENINI 212
I GEN+ +
Sbjct: 91 A---IGKLGENMIL 101
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 27.6 bits (61), Expect = 1.5
Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 23/80 (28%)
Query: 14 PEYKLLPSGSQF------HLVCKIDDYVKHFNTHNDIKEYQA-----------------H 50
PE L P + F + ID V +N + IK Y H
Sbjct: 308 PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGH 367
Query: 51 GSKVHSVAWSCDGRRLASGS 70
+ + DG+ L S
Sbjct: 368 NHASLTESRDADGKWLVVLS 387
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 27.1 bits (58), Expect = 2.4
Identities = 24/193 (12%), Positives = 54/193 (27%), Gaps = 20/193 (10%)
Query: 50 HGSKVHSVAWSCDGRRLASGSFDKSVAIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNP 109
+ S AWS DG +LA +F+ + + + V + +
Sbjct: 37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 96
Query: 110 DLLSTASGDKTVRIWDARTQKSQIMLASGSFDKSVAIFALDKKG-----------DLNKE 158
+ + + G + + + D + + K
Sbjct: 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKV 156
Query: 159 VVYRGHTGSVDQLCWHATNPDLLSTA---------SGDKTVRIWDARTQKSQIIATKGEN 209
+ G + + D+ S G + + D T Q++++ +
Sbjct: 157 NINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLD 216
Query: 210 INITWAPNGNTIA 222
+ APNG +
Sbjct: 217 ETPSLAPNGTMVI 229
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 281
Score = 27.0 bits (58), Expect = 2.5
Identities = 17/220 (7%), Positives = 52/220 (23%), Gaps = 37/220 (16%)
Query: 50 HGSKVHSVAWSCDGRRLASGSF----DKSVAIFALDKKGDLNKEVVY-----RGHTGSVD 100
+ +++ + DGR++A + ++ + + K + Y G D
Sbjct: 39 NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTD 98
Query: 101 QLCWHATNPDLLSTASGDKTVRIWD---------ARTQKSQIMLASGSFDKSVAIFALDK 151
+ ++ST + + + F + +
Sbjct: 99 VAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNT 158
Query: 152 KGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGD-------------------KTVRI 192
+ + G G + ++ ++ +
Sbjct: 159 FELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYS 218
Query: 193 WDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTF 232
D + + + + +G I + F
Sbjct: 219 TDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIF 258
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 25.0 bits (54), Expect = 5.9
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 16/93 (17%)
Query: 145 AIFALDKKGDLNKEVVYRGHTGSVDQLCWHATNPDLLSTASGDKTVRIWDARTQKS---- 200
A+ + D+ ++D++ A + D L +K + R ++
Sbjct: 14 AMARARESYDV--IAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCI 71
Query: 201 ----------QIIATKGENINITWAPNGNTIAV 223
+ A K I + AP+G T A
Sbjct: 72 STYSIGFDHIDLDACKARGIKVGNAPHGATQAR 104
>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 24.5 bits (53), Expect = 9.4
Identities = 7/65 (10%), Positives = 19/65 (29%), Gaps = 1/65 (1%)
Query: 180 LLSTASGDKTVRIWDARTQKSQIIATKGENINITWAPNGNTIAVGNKEDLVTFIDVVKSL 239
+ + D + I+ +++ + ++ N DL+
Sbjct: 76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLD-EHNDDYISLTTSNPVDLLNRHLYEAGD 134
Query: 240 PPRER 244
RE+
Sbjct: 135 RSREQ 139
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.406
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 979,217
Number of extensions: 42875
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 282
Number of HSP's successfully gapped: 155
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)