BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9318
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.28 A Resolution
pdb|4G34|A Chain A, Crystal Structure Of Gsk6924 Bound To Perk (R587-R1092,
Delete A660- T867) At 2.70 A Resolution
Length = 299
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 77/170 (45%), Gaps = 37/170 (21%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+PSNIF + D V+VGDFGL + Q + +P R +GT+LY +PEQ+H
Sbjct: 145 KPSNIFFTMD-DVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIH 203
Query: 67 GLC-DPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINFS 125
G K D++SL G++LFE+L FS
Sbjct: 204 GNSYSHKVDIFSL-----------------------------------GLILFELLYPFS 228
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
T ME+ + +T ++ PP + KYP ++ +L +P RP A I+
Sbjct: 229 TQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINII 278
>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain
Length = 332
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 81/172 (47%), Gaps = 41/172 (23%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHP--LGTRLYAAPEQ 64
+PSNIF + D V+VGDFGL + +E + P+P + H +GT+LY +PEQ
Sbjct: 191 KPSNIFFTMD-DVVKVGDFGLVTAM--DQDEEEQTVLTPMPAYATHXGQVGTKLYMSPEQ 247
Query: 65 LHGL-CDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLIN 123
+HG K D++SL G++LFE+L +
Sbjct: 248 IHGNNYSHKVDIFSL-----------------------------------GLILFELLYS 272
Query: 124 FSTDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
FST ME+ + IT ++ P + KYP ++ +L +P RP A+ I+
Sbjct: 273 FSTQMERVRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDII 324
>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYC|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type In Apo Form.
pdb|1ZYD|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp.
pdb|1ZYD|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild-
Type Complexed With Atp
Length = 303
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 61/185 (32%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPV--------PPRSDH---PLG 55
+P NIF+ ++V++GDFGLA + H + + P SD+ +G
Sbjct: 143 KPMNIFIDES-RNVKIGDFGLA---------KNVHRSLDILKLDSQNLPGSSDNLTSAIG 192
Query: 56 TRLYAAPEQLHGLC--DPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDI 113
T +Y A E L G + K D+YSL
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSL----------------------------------- 217
Query: 114 GIVLFEMLINFSTDMEKSKEITKLKMG--HMPPRI-SSKYPHFAKIISKLLDVNPKHRPS 170
GI+ FEM+ FST ME+ + KL+ PP +K KII L+D +P RP
Sbjct: 218 GIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPG 277
Query: 171 ASQIL 175
A +L
Sbjct: 278 ARTLL 282
>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY4|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant In Apo Form.
pdb|1ZY5|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp.
pdb|1ZY5|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g
Hyperactivating Mutant Complexed With Amppnp
Length = 303
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 75/185 (40%), Gaps = 61/185 (32%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPV--------PPRSDH---PLG 55
+P NIF+ ++V++GDFGLA + H + + P SD+ +G
Sbjct: 143 KPMNIFIDES-RNVKIGDFGLA---------KNVHRSLDILKLDSQNLPGSSDNLTSAIG 192
Query: 56 TRLYAAPEQLHGLC--DPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDI 113
T +Y A E L G + K D+YSL
Sbjct: 193 TAMYVATEVLDGTGHYNEKIDMYSL----------------------------------- 217
Query: 114 GIVLFEMLINFSTDMEKSKEITKLKMG--HMPPRI-SSKYPHFAKIISKLLDVNPKHRPS 170
GI+ FEM+ FST ME+ + KL+ PP +K KII L+D +P RP
Sbjct: 218 GIIFFEMIYPFSTGMERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPG 277
Query: 171 ASQIL 175
A +L
Sbjct: 278 ARTLL 282
>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|B Chain B, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|C Chain C, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|D Chain D, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|E Chain E, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
pdb|1ZXE|F Chain F, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n
Inactivating Mutant In Apo Form
Length = 303
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 61/185 (32%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPV--------PPRSDH---PLG 55
+P NIF+ ++V++GDFGLA + H + + P SD+ +G
Sbjct: 143 KPXNIFIDES-RNVKIGDFGLAKNV---------HRSLDILKLDSQNLPGSSDNLTSAIG 192
Query: 56 TRLYAAPEQLHGLC--DPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDI 113
T Y A E L G + K D YSL
Sbjct: 193 TAXYVATEVLDGTGHYNEKIDXYSL----------------------------------- 217
Query: 114 GIVLFEMLINFSTDMEKSKEITKLKMG--HMPPRI-SSKYPHFAKIISKLLDVNPKHRPS 170
GI+ FE + FST E+ + KL+ PP +K KII L+D +P RP
Sbjct: 218 GIIFFEXIYPFSTGXERVNILKKLRSVSIEFPPDFDDNKXKVEKKIIRLLIDHDPNKRPG 277
Query: 171 ASQIL 175
A +L
Sbjct: 278 ARTLL 282
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 64/173 (36%), Gaps = 53/173 (30%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+PSNIF+ D K V++GDFGL L GT Y +PEQ+
Sbjct: 163 KPSNIFLV-DTKQVKIGDFGLVTSLKNDGKRTRSK-------------GTLRYMSPEQIS 208
Query: 67 GLCDPKS-DVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINFS 125
K D+Y+L G++L E+L
Sbjct: 209 SQDYGKEVDLYAL-----------------------------------GLILAELLHVCD 233
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQILLYL 178
T E SK T L+ G + K ++ KLL P+ RP+ S+IL L
Sbjct: 234 TAFETSKFFTDLRDGIISDIFDKKEK---TLLQKLLSKKPEDRPNTSEILRTL 283
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 67/178 (37%), Gaps = 53/178 (29%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+PSNIF+ D K V++GDFGL L + GT Y +PEQ+
Sbjct: 149 KPSNIFLV-DTKQVKIGDFGLVTSL-------------KNDGKRXRSKGTLRYMSPEQIS 194
Query: 67 GLCDPKS-DVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINFS 125
K D+Y+L G++L E+L
Sbjct: 195 SQDYGKEVDLYAL-----------------------------------GLILAELLHVCD 219
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQILLYLDERKR 183
T E SK T L+ G + K ++ KLL P+ RP+ S+IL L K+
Sbjct: 220 TAFETSKFFTDLRDGIISDIFDKKEK---TLLQKLLSKKPEDRPNTSEILRTLTVWKK 274
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 16/86 (18%)
Query: 8 PSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHG 67
P NI + + K++++ DFG+A L S Q ++H LGT Y +PEQ G
Sbjct: 139 PQNILIDSN-KTLKIFDFGIAKALSETSLTQ-----------TNHVLGTVQYFSPEQAKG 186
Query: 68 -LCDPKSDVYSLVICDKLHELRLLGK 92
D +D+YS+ I L+E+ L+G+
Sbjct: 187 EATDECTDIYSIGIV--LYEM-LVGE 209
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 8 PSNIFVSHDLKS--VQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL 65
P NI + K +++ DFGL+ C ++ ++ +GT Y APE L
Sbjct: 149 PENILLESKEKDCDIKIIDFGLSTCFQQNTKMKD-------------RIGTAYYIAPEVL 195
Query: 66 HGLCDPKSDVYS 77
G D K DV+S
Sbjct: 196 RGTYDEKCDVWS 207
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 7 EPSNIFVSHDLKS--VQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQ 64
+P NI + K +++ DFGL+ C ++ ++ +GT Y APE
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKD-------------RIGTAYYIAPEV 194
Query: 65 LHGLCDPKSDVYS 77
L G D K DV+S
Sbjct: 195 LRGTYDEKCDVWS 207
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 7 EPSNIFVSHDLKS--VQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQ 64
+P NI + K +++ DFGL+ C ++ ++ +GT Y APE
Sbjct: 148 KPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKD-------------RIGTAYYIAPEV 194
Query: 65 LHGLCDPKSDVYS 77
L G D K DV+S
Sbjct: 195 LRGTYDEKCDVWS 207
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 57/172 (33%)
Query: 10 NIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGLC 69
NIF++ D +VQ+GDFG+A L +S + + + +GT Y +PE +C
Sbjct: 155 NIFLTKD-GTVQLGDFGIARVL---------NSTVEL---ARACIGTPYYLSPE----IC 197
Query: 70 -----DPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
+ KSD+++L L+EL L +++ ++ L
Sbjct: 198 ENKPYNNKSDIWALGCV--LYELCTLKHAFEAGSMKNL---------------------- 233
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPH-FAKIISKLLDVNPKHRPSASQIL 175
+ K+ G PP +S Y + ++S+L NP+ RPS + IL
Sbjct: 234 ---------VLKIISGSFPP-VSLHYSYDLRSLVSQLFKRNPRDRPSVNSIL 275
>pdb|4G3G|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) V408l Bound To A 2-(aminothiazolyl)phenol (cmp3)
Length = 350
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 10 NIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGL- 68
N+ +S D + DFG A CL P G S++ D+ GT + APE + G
Sbjct: 194 NVLLSSDGSRAALCDFGHALCL---QPDGLGKSLLT----GDYIPGTETHMAPEVVMGKP 246
Query: 69 CDPKSDVYSLVICDKLHEL 87
CD K D++S C LH L
Sbjct: 247 CDAKVDIWS-SCCMMLHML 264
>pdb|4G3C|A Chain A, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3C|B Chain B, Crystal Structure Of Apo Murine Nf-kappab Inducing Kinase
(nik)
pdb|4G3E|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
pdb|4G3E|B Chain B, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 6-alkynylindoline (cmp1)
Length = 352
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 10 NIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGL- 68
N+ +S D + DFG A CL P G S++ D+ GT + APE + G
Sbjct: 196 NVLLSSDGSRAALCDFGHALCL---QPDGLGKSLLT----GDYIPGTETHMAPEVVMGKP 248
Query: 69 CDPKSDVYSLVICDKLHEL 87
CD K D++S C LH L
Sbjct: 249 CDAKVDIWS-SCCMMLHML 266
>pdb|4G3F|A Chain A, Crystal Structure Of Murine Nf-kappab Inducing Kinase
(nik) Bound To A 2-(aminothiazoly)phenol (cmp2)
Length = 336
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 10 NIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGL- 68
N+ +S D + DFG A CL P G S++ D+ GT + APE + G
Sbjct: 180 NVLLSSDGSRAALCDFGHALCL---QPDGLGKSLLT----GDYIPGTETHMAPEVVMGKP 232
Query: 69 CDPKSDVYSLVICDKLHEL 87
CD K D++S C LH L
Sbjct: 233 CDAKVDIWS-SCCMMLHML 250
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 10 NIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGLC 69
N+ + DL +V + DFGLA P P + H + GTR Y APE L G
Sbjct: 153 NVLLKSDLTAV-LADFGLAVRFEPGKPPGDTHGQV----------GTRRYMAPEVLEGAI 201
Query: 70 DPKSDVY 76
+ + D +
Sbjct: 202 NFQRDAF 208
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 17/83 (20%)
Query: 9 SNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPE----Q 64
+NIF+ H+ +V++GDFGLA S Q+ + P G+ L+ APE Q
Sbjct: 161 NNIFL-HEGLTVKIGDFGLATVKSRWSGSQQ----------VEQPTGSVLWMAPEVIRMQ 209
Query: 65 LHGLCDPKSDVYSLVICDKLHEL 87
+ +SDVYS I L+EL
Sbjct: 210 DNNPFSFQSDVYSYGIV--LYEL 230
>pdb|4G3D|A Chain A, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|B Chain B, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|D Chain D, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
pdb|4G3D|E Chain E, Crystal Structure Of Human Nf-kappab Inducing Kinase (nik)
Length = 371
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 10 NIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGL- 68
N+ +S D + DFG A CL P G S++ D+ GT + APE + G
Sbjct: 215 NVLLSSDGSHAALCDFGHAVCL---QPDGLGKSLL----TGDYIPGTETHMAPEVVLGRS 267
Query: 69 CDPKSDVYSLVICDKLHEL 87
CD K DV+S C LH L
Sbjct: 268 CDAKVDVWS-SCCMMLHML 285
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 19 SVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGLCDPKSDVYSL 78
+ ++ DFGLA + + +V+ +GT Y APE L G PKSD+YS
Sbjct: 171 TAKISDFGLA-----RASEKFAQTVM-----XSRIVGTTAYMAPEALRGEITPKSDIYSF 220
Query: 79 VI 80
+
Sbjct: 221 GV 222
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 29/178 (16%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P+N+F++ + +++GDFGLA + PH H+ GH L T+ Y +P
Sbjct: 147 KPANLFINTEDLVLKIGDFGLARIMDPHYSHK-GH--------LSEGLVTKWYRSPRL-- 195
Query: 67 GLCDPKS-----DVYSL--VICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFE 119
L P + D+++ + + L L +++LE++Q + E + ++ L
Sbjct: 196 -LLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLS 254
Query: 120 ML-INFSTDM-EKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
++ + DM E K +T+L P IS + F + ++L +P R +A + L
Sbjct: 255 VIPVYIRNDMTEPHKPLTQLL-----PGISREAVDF---LEQILTFSPMDRLTAEEAL 304
>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1)
pdb|3I7B|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Nm-Pp1
pdb|3N51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor
Rm-1-95
pdb|3SX9|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-132
pdb|3SXF|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-89
pdb|3T3U|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-130
pdb|3T3V|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor,
Rm-1-87
pdb|3UPX|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1300
pdb|3UPZ|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumpless Bki Analog Uw1243
pdb|3V51|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Rm-1-176
pdb|3V5P|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1288
pdb|3V5T|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Inhibitor Uw1299
Length = 484
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 7 EPSNIFVSHDLK--SVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQ 64
+P N+ + K ++++ DFGL S H E + +GT Y APE
Sbjct: 153 KPENLLLESKSKDANIRIIDFGL-------STHFEA------SKKMKDKIGTAYYIAPEV 199
Query: 65 LHGLCDPKSDVYS 77
LHG D K DV+S
Sbjct: 200 LHGTYDEKCDVWS 212
>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2
pdb|3NYV|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii
(Tgcdpk1) In Complex With Non-Specific Inhibitor
Whi-P180
Length = 484
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 7 EPSNIFVSHDLK--SVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQ 64
+P N+ + K ++++ DFGL S H E + +GT Y APE
Sbjct: 153 KPENLLLESKSKDANIRIIDFGL-------STHFE------ASKKXKDKIGTAYYIAPEV 199
Query: 65 LHGLCDPKSDVYSLVI 80
LHG D K DV+S +
Sbjct: 200 LHGTYDEKCDVWSTGV 215
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 19 SVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGLCDPKSDVYSL 78
+ ++ DFGLA + + +V+ +GT Y APE L G PKSD+YS
Sbjct: 171 TAKISDFGLA-----RASEKFAQTVMXX-----RIVGTTAYMAPEALRGEITPKSDIYSF 220
Query: 79 VI 80
+
Sbjct: 221 GV 222
>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
pdb|3MA6|B Chain B, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence
Of 3brb-Pp1
Length = 298
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 15/73 (20%)
Query: 7 EPSNIFVSHDLK--SVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQ 64
+P N+ + K ++++ DFGL S H E + +GT Y APE
Sbjct: 159 KPENLLLESKSKDANIRIIDFGL-------STHFE------ASKKMKDKIGTAYYIAPEV 205
Query: 65 LHGLCDPKSDVYS 77
LHG D K DV+S
Sbjct: 206 LHGTYDEKCDVWS 218
>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From
Toxoplasma Gondii, Tgme49.101440
Length = 507
Score = 34.3 bits (77), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 7 EPSNIFVSHDLK--SVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQ 64
+P N+ + K ++++ DFGL S H E + +GT Y APE
Sbjct: 176 KPENLLLESKSKDANIRIIDFGL-------STHFE------ASKKMKDKIGTAYYIAPEV 222
Query: 65 LHGLCDPKSDVYSLVI 80
LHG D K DV+S +
Sbjct: 223 LHGTYDEKCDVWSTGV 238
>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii,
Tgme49_101440, In Presence Of Calcium
Length = 508
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 15/76 (19%)
Query: 7 EPSNIFVSHDLK--SVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQ 64
+P N+ + K ++++ DFGL S H E + +GT Y APE
Sbjct: 177 KPENLLLESKSKDANIRIIDFGL-------STHFE------ASKKMKDKIGTAYYIAPEV 223
Query: 65 LHGLCDPKSDVYSLVI 80
LHG D K DV+S +
Sbjct: 224 LHGTYDEKCDVWSTGV 239
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 54 LGTRLYAAPEQLHGLCDPKSDVYSLVI 80
+GT Y APE L G PKSD+YS +
Sbjct: 187 VGTTAYXAPEALRGEITPKSDIYSFGV 213
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 54 LGTRLYAAPEQLHGLCDPKSDVYSLVI 80
+GT Y APE L G PKSD+YS +
Sbjct: 190 VGTTAYMAPEALRGEITPKSDIYSFGV 216
>pdb|4DN5|A Chain A, Crystal Structure Of Nf-kb-inducing Kinase (nik)
pdb|4DN5|B Chain B, Crystal Structure Of Nf-kb-inducing Kinase (nik)
Length = 356
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 10 NIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGL- 68
N+ +S D + DFG A CL P G ++ D+ GT + APE + G
Sbjct: 196 NVLLSSDGSHAALCDFGHAVCL---QPDGLGKDLL----TGDYIPGTETHMAPEVVLGRS 248
Query: 69 CDPKSDVYSLVICDKLHEL 87
CD K DV+S C LH L
Sbjct: 249 CDAKVDVWS-SCCMMLHML 266
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 18 KSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDH--PLGTRLYAAPEQLHGLC-DPKSD 74
K+V V DFGLA ++ EG + P R +G + APE ++G D K D
Sbjct: 145 KNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVD 204
Query: 75 VYS--LVICD 82
V+S +V+C+
Sbjct: 205 VFSFGIVLCE 214
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 60/175 (34%), Gaps = 55/175 (31%)
Query: 8 PSNIFVSHDLKS--VQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL 65
P N+ + K +++ DFGL+ +E LGT Y APE L
Sbjct: 164 PENLLLESKEKDALIKIVDFGLSAVFENQKKMKE-------------RLGTAYYIAPEVL 210
Query: 66 HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF- 124
D K DV+S IG++LF +L +
Sbjct: 211 RKKYDEKCDVWS-----------------------------------IGVILFILLAGYP 235
Query: 125 ----STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
TD E +++ K K P + +I ++L + + R SA Q L
Sbjct: 236 PFGGQTDQEILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQAL 290
>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3,
Tgme49_105860
Length = 467
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 55/161 (34%), Gaps = 53/161 (32%)
Query: 20 VQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGLCDPKSDVYSLV 79
+++ DFGL S H E V + LGT Y APE L D K DV+S
Sbjct: 146 IKIVDFGL-------SAHFE------VGGKMKERLGTAYYIAPEVLRKKYDEKCDVWS-- 190
Query: 80 ICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF-----STDMEKSKEI 134
G++L+ +L + TD E K +
Sbjct: 191 ---------------------------------CGVILYILLCGYPPFGGQTDQEILKRV 217
Query: 135 TKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
K K PP + +++ +L P R SA + L
Sbjct: 218 EKGKFSFDPPDWTQVSDEAKQLVKLMLTYEPSKRISAEEAL 258
>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From
Toxoplasma Gondii, 541.m00134, Kinase Domain
Length = 287
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 55/161 (34%), Gaps = 53/161 (32%)
Query: 20 VQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGLCDPKSDVYSLV 79
+++ DFGL S H E V + LGT Y APE L D K DV+S
Sbjct: 163 IKIVDFGL-------SAHFE------VGGKMKERLGTAYYIAPEVLRKKYDEKCDVWS-- 207
Query: 80 ICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF-----STDMEKSKEI 134
G++L+ +L + TD E K +
Sbjct: 208 ---------------------------------CGVILYILLCGYPPFGGQTDQEILKRV 234
Query: 135 TKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
K K PP + +++ +L P R SA + L
Sbjct: 235 EKGKFSFDPPDWTQVSDEAKQLVKLMLTYEPSKRISAEEAL 275
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P NI ++ D+ +Q+ DFG A L P S +S + GT Y +PE L
Sbjct: 159 KPENILLNEDMH-IQITDFGTAKVLSPESKQARANSFV----------GTAQYVSPELLT 207
Query: 67 GLCDPK-SDVYSL 78
K SD+++L
Sbjct: 208 EKSASKSSDLWAL 220
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 66/186 (35%), Gaps = 67/186 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P NI ++ D+ +Q+ DFG A L P S +S + GT Y +PE L
Sbjct: 156 KPENILLNEDM-HIQITDFGTAKVLSPESKQARANSFV----------GTAQYVSPELLT 204
Query: 67 GLCDPK-SDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINFS 125
K SD+++L G ++++++
Sbjct: 205 EKSACKSSDLWAL-----------------------------------GCIIYQLV---- 225
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDERK 182
G P R ++Y F KII D K P A + LL LD K
Sbjct: 226 -------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATK 272
Query: 183 RLSSED 188
RL E+
Sbjct: 273 RLGCEE 278
>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1
pdb|3FPQ|B Chain B, Crystal Structure Of The Kinase Domain Of Wnk1
Length = 290
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 14/72 (19%)
Query: 10 NIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGLC 69
NIF++ SV++GD GLA + + +GT + APE
Sbjct: 161 NIFITGPTGSVKIGDLGLA--------------TLKRASFAKAVIGTPEFXAPEXYEEKY 206
Query: 70 DPKSDVYSLVIC 81
D DVY+ C
Sbjct: 207 DESVDVYAFGXC 218
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 114 GIVLFEMLINFS--TDMEKSKEITKLKMGHM---PPRISSKYPHFAKIISKLLDVNPKHR 168
G++L+ +L+ + D ++ + ++K G P + P +I+K+L +NP R
Sbjct: 193 GVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKR 252
Query: 169 PSASQILL--YLDERKRLSSEDDKDGIIDELK 198
+AS+ L ++ +R ++S + +D LK
Sbjct: 253 ITASEALKHPWICQRSTVASMMHRQETVDCLK 284
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 66/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S +S + GT Y +PE L
Sbjct: 160 KPENILLNEDM-HIQITDFGTAKVLSPESKQARANSFV----------GTAQYVSPELLT 208
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 209 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 229
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 230 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 275
Query: 182 KRLSSED 188
KRL E+
Sbjct: 276 KRLGCEE 282
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 67/186 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 156 KPENILLNEDM-HIQITDFGTAKVLSPESKQ----------ARANXFVGTAQYVSPELLT 204
Query: 67 GLCDPKS-DVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINFS 125
KS D+++L G ++++++
Sbjct: 205 EKSACKSSDLWAL-----------------------------------GCIIYQLV---- 225
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDERK 182
G P R ++Y F KII D K P A + LL LD K
Sbjct: 226 -------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATK 272
Query: 183 RLSSED 188
RL E+
Sbjct: 273 RLGCEE 278
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 114 GIVLFEMLINFS--TDMEKSKEITKLKMGHM---PPRISSKYPHFAKIISKLLDVNPKHR 168
G++L+ +L+ + D ++ + ++K G P + P +I+K+L +NP R
Sbjct: 193 GVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPAKR 252
Query: 169 PSASQILL--YLDERKRLSSEDDKDGIIDELK 198
+AS+ L ++ +R ++S + +D LK
Sbjct: 253 ITASEALKHPWICQRSTVASMMHRQETVDCLK 284
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 67/186 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 134 KPENILLNEDM-HIQITDFGTAKVLSPESKQA----------RANXFVGTAQYVSPELLT 182
Query: 67 GLCDPKS-DVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINFS 125
KS D+++L G ++++++
Sbjct: 183 EKSACKSSDLWAL-----------------------------------GCIIYQLV---- 203
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDERK 182
G P R ++Y F KII D K P A + LL LD K
Sbjct: 204 -------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATK 250
Query: 183 RLSSED 188
RL E+
Sbjct: 251 RLGCEE 256
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 67/186 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 135 KPENILLNEDM-HIQITDFGTAKVLSPESKQ----------ARANXFVGTAQYVSPELLT 183
Query: 67 GLCDPKS-DVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINFS 125
KS D+++L G ++++++
Sbjct: 184 EKSACKSSDLWAL-----------------------------------GCIIYQLV---- 204
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDERK 182
G P R ++Y F KII D K P A + LL LD K
Sbjct: 205 -------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATK 251
Query: 183 RLSSED 188
RL E+
Sbjct: 252 RLGCEE 257
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 67/186 (36%), Gaps = 67/186 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 141 KPENILLNEDM-HIQITDFGTAKVLSPESKQ----------ARANXFVGTAQYVSPELLT 189
Query: 67 GLCDPKS-DVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINFS 125
KS D+++L G ++++++
Sbjct: 190 EKSACKSSDLWAL-----------------------------------GCIIYQLV---- 210
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDERK 182
G P R ++Y F KII D K P A + LL LD K
Sbjct: 211 -------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDATK 257
Query: 183 RLSSED 188
RL E+
Sbjct: 258 RLGCEE 263
>pdb|2IWI|A Chain A, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2IWI|B Chain B, Crystal Structure Of The Human Pim2 In Complex With A
Ruthenium Organometallic Ligand Ru1
Length = 312
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 113 IGIVLFEMLINFSTDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSAS 172
+GI+L++M+ E+ +EI + ++ H P +S P +I + L P RPS
Sbjct: 225 LGILLYDMVCG-DIPFERDQEILEAEL-HFPAHVS---PDCCALIRRCLAPKPSSRPSLE 279
Query: 173 QILLYLDERKRLSSED 188
+IL LD + +ED
Sbjct: 280 EIL--LDPWMQTPAED 293
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 136 KPENILLNEDM-HIQITDFGTAKVLSPESKQA----------RANXFVGTAQYVSPELLT 184
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 185 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 205
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 206 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 251
Query: 182 KRLSSED 188
KRL E+
Sbjct: 252 KRLGCEE 258
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 137 KPENILLNEDM-HIQITDFGTAKVLSPESKQA----------RANXFVGTAQYVSPELLT 185
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 186 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 206
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 207 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 252
Query: 182 KRLSSED 188
KRL E+
Sbjct: 253 KRLGCEE 259
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 31.2 bits (69), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 159 KPENILLNEDM-HIQITDFGTAKVLSPESKQ----------ARANXFVGTAQYVSPELLT 207
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 208 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 228
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 229 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 274
Query: 182 KRLSSED 188
KRL E+
Sbjct: 275 KRLGCEE 281
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 157 KPENILLNEDM-HIQITDFGTAKVLSPESKQ----------ARANXFVGTAQYVSPELLT 205
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 206 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 226
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 227 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 272
Query: 182 KRLSSED 188
KRL E+
Sbjct: 273 KRLGCEE 279
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 157 KPENILLNEDM-HIQITDFGTAKVLSPESKQ----------ARANXFVGTAQYVSPELLT 205
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 206 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 226
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 227 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 272
Query: 182 KRLSSED 188
KRL E+
Sbjct: 273 KRLGCEE 279
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 157 KPENILLNEDM-HIQITDFGTAKVLSPESKQ----------ARANXFVGTAQYVSPELLT 205
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 206 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 226
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 227 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 272
Query: 182 KRLSSED 188
KRL E+
Sbjct: 273 KRLGCEE 279
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 159 KPENILLNEDM-HIQITDFGTAKVLSPESKQA----------RANXFVGTAQYVSPELLT 207
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 208 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 228
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 229 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 274
Query: 182 KRLSSED 188
KRL E+
Sbjct: 275 KRLGCEE 281
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 114 GIVLFEMLINFS--TDMEKSKEITKLKMGHM---PPRISSKYPHFAKIISKLLDVNPKHR 168
G++L+ +L+ + D ++ + ++K G P + P +I+K+L +NP R
Sbjct: 211 GVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKR 270
Query: 169 PSASQILL--YLDERKRLSSEDDKDGIIDELK 198
+A++ L ++ R ++S + +D LK
Sbjct: 271 ITAAEALKHPWISHRSTVASCMHRQETVDCLK 302
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 157 KPENILLNEDM-HIQITDFGTAKVLSPESKQ----------ARANAFVGTAQYVSPELLT 205
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 206 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 226
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 227 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 272
Query: 182 KRLSSED 188
KRL E+
Sbjct: 273 KRLGCEE 279
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 164 KPENILLNEDM-HIQITDFGTAKVLSPESKQA----------RANXFVGTAQYVSPELLT 212
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 213 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 233
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 234 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 279
Query: 182 KRLSSED 188
KRL E+
Sbjct: 280 KRLGCEE 286
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 160 KPENILLNEDM-HIQITDFGTAKVLSPESKQA----------RANXFVGTAQYVSPELLT 208
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 209 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 229
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 230 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 275
Query: 182 KRLSSED 188
KRL E+
Sbjct: 276 KRLGCEE 282
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 67/187 (35%), Gaps = 69/187 (36%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQL- 65
+P NI ++ D+ +Q+ DFG A L P S R++ +GT Y +PE L
Sbjct: 159 KPENILLNEDM-HIQITDFGTAKVLSPESKQA----------RANXFVGTAQYVSPELLT 207
Query: 66 -HGLCDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLINF 124
C SD+++L G ++++++
Sbjct: 208 EKSACK-SSDLWAL-----------------------------------GCIIYQLV--- 228
Query: 125 STDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQI---LLYLDER 181
G P R ++Y F KII D K P A + LL LD
Sbjct: 229 --------------AGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 274
Query: 182 KRLSSED 188
KRL E+
Sbjct: 275 KRLGCEE 281
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 114 GIVLFEMLINFS--TDMEKSKEITKLKMGHM---PPRISSKYPHFAKIISKLLDVNPKHR 168
G++L+ +L+ + D ++ + ++K G P + P +I+K+L +NP R
Sbjct: 200 GVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKMLTINPSKR 259
Query: 169 PSASQILL--YLDERKRLSSEDDKDGIIDELK 198
+A++ L ++ R ++S + +D LK
Sbjct: 260 ITAAEALKHPWISHRSTVASCMHRQETVDCLK 291
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 30.8 bits (68), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 52/170 (30%)
Query: 9 SNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGL 68
N+F++ D+ V++GDFGLA + +G R GT Y APE
Sbjct: 155 GNLFLNDDM-DVKIGDFGLATKI-----EFDGE-------RKKDLCGTPNYIAPE----- 196
Query: 69 CDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLIN---FS 125
V+C K H + +++S +G +L+ +L+ F
Sbjct: 197 ----------VLCKKGHSFEV--------------DIWS-----LGCILYTLLVGKPPFE 227
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
T K I K + PR + P + +I ++L +P RPS +++L
Sbjct: 228 TSCLKETYIRIKKNEYSVPRHIN--PVASALIRRMLHADPTLRPSVAELL 275
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 151 PHFAKIISKLLDVNPKHRPSASQIL--LYLDERKRLSSE 187
PHF + + L NP RPSAS +L + + KR +SE
Sbjct: 308 PHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKRRASE 346
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 151 PHFAKIISKLLDVNPKHRPSASQIL--LYLDERKRLSSE 187
PHF + + L NP RPSAS +L + + KR +SE
Sbjct: 292 PHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKRRASE 330
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 30.4 bits (67), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 52/170 (30%)
Query: 9 SNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGL 68
N+F++ D+ V++GDFGLA + +G R GT Y APE
Sbjct: 171 GNLFLNDDM-DVKIGDFGLATKI-----EFDGE-------RKKXLCGTPNYIAPE----- 212
Query: 69 CDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLIN---FS 125
V+C K H + +++S +G +L+ +L+ F
Sbjct: 213 ----------VLCKKGHSFEV--------------DIWS-----LGCILYTLLVGKPPFE 243
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
T K I K + PR + P + +I ++L +P RPS +++L
Sbjct: 244 TSCLKETYIRIKKNEYSVPRHIN--PVASALIRRMLHADPTLRPSVAELL 291
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 52/170 (30%)
Query: 9 SNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLHGL 68
N+F++ D+ V++GDFGLA + +G R GT Y APE
Sbjct: 171 GNLFLNDDM-DVKIGDFGLATKI-----EFDGE-------RKKDLCGTPNYIAPE----- 212
Query: 69 CDPKSDVYSLVICDKLHELRLLGKSYKLEELQYLRELFSPIRQDIGIVLFEMLIN---FS 125
V+C K H + +++S +G +L+ +L+ F
Sbjct: 213 ----------VLCKKGHSFEV--------------DIWS-----LGCILYTLLVGKPPFE 243
Query: 126 TDMEKSKEITKLKMGHMPPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
T K I K + PR + P + +I ++L +P RPS +++L
Sbjct: 244 TSCLKETYIRIKKNEYSVPRHIN--PVASALIRRMLHADPTLRPSVAELL 291
>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain
Length = 360
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 31/144 (21%)
Query: 54 LGTRLYAAPEQLHGL-CDPKSDVYSL-VICDKLHELRLLGKSYK-LEELQYLRELFSPIR 110
+ TR Y APE + L D SD++S + +L+ LL ++++ +E L + + PI
Sbjct: 220 INTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIP 279
Query: 111 QDIGIVLFEMLINFSTDMEKSKEITK--LKMGHMPPRISS-----------------KYP 151
+++ L+E +T SK + K LK+ P SS K+
Sbjct: 280 KNM---LYE-----ATKTNGSKYVNKDELKLA-WPENASSINSIKHVKKCLPLYKIIKHE 330
Query: 152 HFAKIISKLLDVNPKHRPSASQIL 175
F + +L ++P RPS +++L
Sbjct: 331 LFCDFLYSILQIDPTLRPSPAELL 354
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 103 RELFSPIRQDIGIVLFEMLINFSTDMEKSKEITKLKMGHMPPRISSKY-----PHFAKII 157
R FSP +G +L+EM+ S ++ K+I + ++ + + +Y P +
Sbjct: 361 RYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLC 420
Query: 158 SKLLDVNPKHR 168
S+LL +P R
Sbjct: 421 SQLLCKDPAER 431
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 143 PPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
P + S ++ F KI LD NP+ RPSA+Q+L
Sbjct: 245 PSKWSVEFRDFLKIA---LDKNPETRPSAAQLL 274
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 103 RELFSPIRQDIGIVLFEMLINFSTDMEKSKEITKLKMGHMPPRISSKY-----PHFAKII 157
R FSP +G +L+EM+ S ++ K+I + ++ + + +Y P +
Sbjct: 361 RYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSERFSPQARSLC 420
Query: 158 SKLLDVNPKHR 168
S+LL +P R
Sbjct: 421 SQLLCKDPAER 431
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 143 PPRISSKYPHFAKIISKLLDVNPKHRPSASQIL 175
P + S ++ F KI LD NP+ RPSA+Q+L
Sbjct: 237 PSKWSVEFRDFLKIA---LDKNPETRPSAAQLL 266
>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
pdb|3EB0|C Chain C, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum
In Complex With Indirubin E804
Length = 383
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 15/74 (20%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P N+ V+ ++++ DFG A L+P P S + +R Y APE +
Sbjct: 168 KPQNLLVNSKDNTLKLCDFGSAKKLIPSEP-------------SVAXICSRFYRAPELML 214
Query: 67 GLCD--PKSDVYSL 78
G + P D++S+
Sbjct: 215 GATEYTPSIDLWSI 228
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 17/74 (22%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P+NI + + V++ D GLAC PH +GT Y APE L
Sbjct: 319 KPANILLD-EHGHVRISDLGLACDFSKKKPHAS--------------VGTHGYMAPEVLQ 363
Query: 67 -GLC-DPKSDVYSL 78
G+ D +D +SL
Sbjct: 364 KGVAYDSSADWFSL 377
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 17/74 (22%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P+NI + + V++ D GLAC PH +GT Y APE L
Sbjct: 318 KPANILLD-EHGHVRISDLGLACDFSKKKPHAS--------------VGTHGYMAPEVLQ 362
Query: 67 -GLC-DPKSDVYSL 78
G+ D +D +SL
Sbjct: 363 KGVAYDSSADWFSL 376
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P+NI + V++ D GLAC PH +GT Y APE L
Sbjct: 319 KPANILLDEH-GHVRISDLGLACDFSKKKPHAS--------------VGTHGYMAPEVLQ 363
Query: 67 -GLC-DPKSDVYSL 78
G+ D +D +SL
Sbjct: 364 KGVAYDSSADWFSL 377
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 17/74 (22%)
Query: 7 EPSNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRSDHPLGTRLYAAPEQLH 66
+P+NI + V++ D GLAC PH +GT Y APE L
Sbjct: 319 KPANILLDEH-GHVRISDLGLACDFSKKKPHAS--------------VGTHGYMAPEVLQ 363
Query: 67 -GLC-DPKSDVYSL 78
G+ D +D +SL
Sbjct: 364 KGVAYDSSADWFSL 377
>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
Deinococcus Radiodurans
Length = 851
Score = 27.7 bits (60), Expect = 5.0, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 144 PRISSKYP-------HFAKIISKLLDVNPKHRPSASQILLYLDERK-RLSSEDDKDGIID 195
PR+ +++P H + + LLD N R Q L +D+ L+ ++ D I D
Sbjct: 65 PRVVTRFPPDPSGYAHLGHVFASLLDFNTA-RQYGGQFNLRMDDTNPELARQEYVDSIAD 123
Query: 196 ELK 198
+LK
Sbjct: 124 DLK 126
>pdb|4AAY|A Chain A, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|C Chain C, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|E Chain E, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|G Chain G, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
Length = 845
Score = 27.7 bits (60), Expect = 5.4, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 9 SNIFVSHDLKSVQVGDFGLACCLLPHSPHQEGHSVIPVPPRS 50
+N F++H + +++ G L+P PH+ G +I P R+
Sbjct: 244 TNYFLNHWIPNLRGESLGKKKELMPEEPHEAGRIIIVDPRRT 285
>pdb|2C0K|A Chain A, The Structure Of Hemoglobin From The Botfly Gasterophilus
Intestinalis
pdb|2C0K|B Chain B, The Structure Of Hemoglobin From The Botfly Gasterophilus
Intestinalis
Length = 151
Score = 26.9 bits (58), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 126 TDMEKSKEITKLKMGH----MPPRISSKYPH-------FAKIISKLLDVNPKHRPSASQI 174
D++++ E+ KM M R KYPH F +I L N + + ++I
Sbjct: 7 NDIKRTWEVVAAKMTEAGVEMLKRYFKKYPHNLNHFPWFKEIPFDDLPENARFKTHGTRI 66
Query: 175 LLYLDERKRLSSEDDKDGIIDELKLDLAKKNEE 207
L +DE + S D D D++ LA+ + E
Sbjct: 67 LRQVDEGVKALSVDFGDKKFDDVWKKLAQTHHE 99
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 103 RELFSPIRQDIGIVLFEMLINFSTDMEKSKEITKLKMGHMPPRISSKYPHFAKII----- 157
++L + +DI L + +N ++ SKEI + + P+ SK H KI+
Sbjct: 23 KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELV 82
Query: 158 ------SKLLDVNPKHR 168
+K L++NPK +
Sbjct: 83 KLLGEEAKKLELNPKKQ 99
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
Query: 103 RELFSPIRQDIGIVLFEMLINFSTDMEKSKEITKLKMGHMPPRISSKYPHFAKII----- 157
++L + +DI L + +N ++ SKEI + + P+ SK H KI+
Sbjct: 23 KKLIKEVIKDIQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELV 82
Query: 158 ------SKLLDVNPKHR 168
+K L++NPK +
Sbjct: 83 KLLGEEAKKLELNPKKQ 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,550,873
Number of Sequences: 62578
Number of extensions: 269930
Number of successful extensions: 886
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 100
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)