BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9319
(432 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH 104
+ LK H + I FD +GK A S D + LWD CIRT D V ++S
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 202
Query: 105 DGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW----HPKQ--YLLAYACDDKY 158
+G I S S D TI + V++G C++ T W P Q L+A +D+
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTG-----YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT 257
Query: 159 DR 160
R
Sbjct: 258 VR 259
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 21 SSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
+S D++ K DF+ E + H + P G + S+D + +W+
Sbjct: 166 ASCSADMTIKLWDFQ-----GFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 220
Query: 81 AAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI 120
C++TF VR + + DG LIAS S D T+ +
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 44 EQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAIS 101
E+ L H PVT + F P S+DA + +WD RT + V+ IS
Sbjct: 100 EKYALSGHRSPVTRVI--FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS 157
Query: 102 FSHDGALIASGSEDLTIDI 120
F H G L+AS S D+TI +
Sbjct: 158 FDHSGKLLASCSADMTIKL 176
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI 120
G + GS+D + +WD + C+ T D VR + F G I S ++D T+ +
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ F GK+ + D + +WD C++T + V ++ F + +GS D T
Sbjct: 344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403
Query: 118 IDI 120
+ +
Sbjct: 404 VKV 406
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 38 EHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWP 96
H ++E+N L+AH + + F P G+ A S D V LW+ +L ++T
Sbjct: 2 SHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSS 59
Query: 97 VRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATF-TVAWHPKQYLLAYACD 155
V ++FS DG IAS S+D T+ + + +G+ + + +++ VA+ P +A A D
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 118
Query: 156 DK 157
DK
Sbjct: 119 DK 120
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWPVRAISFSHD 105
L H + + F P G+ A S D V LW+ +L ++T VR ++FS D
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFSPD 396
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDICIQAAT-FTVAWHPKQYLLAYACDDK 157
G IAS S+D T+ + + +G+ + + +++ + VA+ P +A A DDK
Sbjct: 397 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDK 448
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWPVRAISFSHD 105
L H + + F P G+ A S D V LW+ +L ++T VR ++FS D
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFSPD 109
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDICIQAAT-FTVAWHPKQYLLAYACDDK 157
G IAS S+D T+ + + +G+ + + +++ + VA+ P +A A DDK
Sbjct: 110 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 161
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWPVRAISFSHD 105
L H + + F P G+ A S D V LW+ +L ++T VR ++FS D
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFSPD 232
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDICIQAATFT-VAWHPKQYLLAYACDDK 157
G IAS S+D T+ + + +G+ + + +++ VA+ P +A A DDK
Sbjct: 233 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDK 284
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWPVRAISFSHD 105
L H + + F P G+ A S D V LW+ +L ++T VR ++FS D
Sbjct: 462 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFSPD 519
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDICIQAAT-FTVAWHPKQYLLAYACDDK 157
G IAS S+D T+ + + +G+ + + +++ + VA+ P +A A DK
Sbjct: 520 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDK 571
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWPVRAISFSHD 105
L H + + F P G+ A S D V LW+ +L ++T V ++FS D
Sbjct: 93 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPD 150
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDICIQAAT-FTVAWHPKQYLLAYACDDK 157
G IAS S+D T+ + + +G+ + + +++ + VA+ P +A A DDK
Sbjct: 151 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK 202
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWPVRAISFSHD 105
L H + + F P G+ A S D V LW+ +L ++T V ++FS D
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPD 314
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDICIQAAT-FTVAWHPKQYLLAYACDDK 157
G IAS S+D T+ + + +G+ + + +++ + VA+ P +A A DDK
Sbjct: 315 GQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWPVRAISFSHD 105
L H + + F P + A S D V LW+ +L ++T VR ++FS D
Sbjct: 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVRGVAFSPD 478
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDICIQAATF-TVAWHPKQYLLAYACDDK 157
G IAS S+D T+ + + +G+ + + +++ VA+ P +A A DDK
Sbjct: 479 GQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 530
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD-AAELTCIRTFQRLDWPVRAISFSHD 105
L H + + F P G+ A S D V LW+ +L ++T V ++FS D
Sbjct: 503 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL--LQTLTGHSSSVWGVAFSPD 560
Query: 106 GALIASGSEDLTI 118
G IAS S D T+
Sbjct: 561 GQTIASASSDKTV 573
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 125 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 184
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 185 LIVSSSYDGLCRIWDTASGQ 204
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 101 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 156 WDVKTGKCLKTLP 168
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 129 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 182
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Query: 123 VESGK 127
GK
Sbjct: 243 YSKGK 247
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 220 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 279
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 280 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 334
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 127 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 186
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 187 LIVSSSYDGLCRIWDTASGQ 206
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 103 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 158 WDVKTGKCLKTLP 170
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 131 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 184
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 185 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Query: 123 VESGK 127
GK
Sbjct: 245 YSKGK 249
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 222 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 281
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 282 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 336
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 108 LIASGSEDLTIDIAHVESGK 127
L+ S S+D T+ I V SGK
Sbjct: 82 LLVSASDDKTLKIWDVSSGK 101
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 201 VKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 315
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K K L AH + F+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGMCLK-----TLPAHSDPVSAVHFNRD 163
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D + +
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 123 VESGK 127
GK
Sbjct: 224 YSKGK 228
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 71 SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG 126
S D + +WD + C++T + V +F+ LI SGS D ++ I V++G
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 120 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 179
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 180 LIVSSSYDGLCRIWDTASGQ 199
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 96 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 151 WDVKTGKCLKTLP 163
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 124 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 177
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 178 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 237
Query: 123 VESGK 127
GK
Sbjct: 238 YSKGK 242
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 215 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 274
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 275 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 329
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 108 LIASGSEDLTIDIAHVESGK 127
L+ S S+D T+ I V SGK
Sbjct: 82 LLVSASDDKTLKIWDVSSGK 101
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 261 DNMVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 315
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K K L AH + F+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGMCLK-----TLPAHSDPVSAVHFNRD 163
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 123 VESGK 127
GK
Sbjct: 224 YSKGK 228
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 71 SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG 126
S D + +WD + C++T + V +F+ LI SGS D ++ I V++G
Sbjct: 87 SDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 142
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQ 188
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 85 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 140 WDVKTGKCLKTLP 152
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 113 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 166
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 123 VESGK 127
GK
Sbjct: 227 YSKGK 231
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 318
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 82 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 137 WDVKTGKCLKTLP 149
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 163
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 123 VESGK 127
GK
Sbjct: 224 YSKGK 228
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 115 DLTIDIAHVESGKKVYDICIQAAT---FTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V +Q T + A HP + ++A A +DK + K DC
Sbjct: 261 DNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLYKSDC 315
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 82 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 137 WDVKTGKCLKTLP 149
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 163
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 123 VESGK 127
GK
Sbjct: 224 YSKGK 228
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 12/117 (10%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 115 DLTIDIAHVESGKKVYDICIQAAT---FTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V +Q T + A HP + ++A A +DK + K DC
Sbjct: 261 DNLVYIWNLQTKEIVQK--LQGHTDVVISTACHPTENIIASAALENDKTIKLFKSDC 315
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 163 LIVSSSYDGLCRIWDTASGQ 182
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 79 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 134 WDVKTGKCLKTLP 146
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 107 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 160
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 123 VESGK 127
GK
Sbjct: 221 YSKGK 225
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 312
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 103 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 162
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 163 LIVSSSYDGLCRIWDTASGQ 182
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 79 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 134 WDVKTGKCLKTLP 146
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 107 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 160
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220
Query: 123 VESGK 127
GK
Sbjct: 221 YSKGK 225
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 198 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 258 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 312
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 165
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 166 LIVSSSYDGLCRIWDTASGQ 185
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 82 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 137 WDVKTGKCLKTLP 149
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 163
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 123 VESGK 127
GK
Sbjct: 224 YSKGK 228
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 261 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 315
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 99 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 158
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 159 LIVSSSYDGLCRIWDTASGQ 178
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 75 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 130 WDVKTGKCLKTLP 142
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 103 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 156
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 157 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 216
Query: 123 VESGK 127
GK
Sbjct: 217 YSKGK 221
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 194 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 253
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 254 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 308
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQ 188
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 85 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 140 WDVKTGKCLKTLP 152
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 113 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 166
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 123 VESGK 127
GK
Sbjct: 227 YSKGK 231
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 318
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 108 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 167
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 168 LIVSSSYDGLCRIWDTASGQ 187
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 84 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 139 WDVKTGKCLKTLP 151
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 112 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 165
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 166 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 225
Query: 123 VESGK 127
GK
Sbjct: 226 YSKGK 230
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 203 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 262
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 263 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 317
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 104 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 163
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 164 LIVSSSYDGLCRIWDTASGQ 183
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 80 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 135 WDVKTGKCLKTLP 147
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 108 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 161
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 162 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 221
Query: 123 VESGK 127
GK
Sbjct: 222 YSKGK 226
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 199 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 258
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 259 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 313
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 109 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 168
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 169 LIVSSSYDGLCRIWDTASGQ 188
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 85 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 140 WDVKTGKCLKTLP 152
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 113 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 166
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 226
Query: 123 VESGK 127
GK
Sbjct: 227 YSKGK 231
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 204 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 264 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 318
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 36/80 (45%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD C++T PV A+ F+ DG+
Sbjct: 102 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS 161
Query: 108 LIASGSEDLTIDIAHVESGK 127
LI S S D I SG+
Sbjct: 162 LIVSSSYDGLCRIWDTASGQ 181
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F P G++ A S D L+ +W A + +T + +++S D
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDKYDRK 161
L+ S S+D T+ I V SGK C++ F ++P+ L+ D+ R
Sbjct: 78 LLVSASDDKTLKIWDVSSGK-----CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 162 QDCGNLKVFGFLP 174
D K LP
Sbjct: 133 WDVKTGKCLKTLP 145
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ +L S D S + D K + K L AH + F+
Sbjct: 106 SNYVFCCNFNPQSNLIVSGSF-DESVRIWDVKTGKCLK-----TLPAHSDPVSAVHFNRD 159
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALIASGSEDLTIDIAH 122
G S D L +WD A C++T D PV + FS +G I + + D T+ +
Sbjct: 160 GSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 219
Query: 123 VESGK 127
GK
Sbjct: 220 YSKGK 224
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---QRLDWPVRAISFSHDGALIASGSE 114
++F P GKY + D + LWD ++ C++T+ + + + A G I SGSE
Sbjct: 197 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 256
Query: 115 DLTIDIAHVESGKKV------YDICIQAATFTVAWHPKQYLLAYAC--DDKYDR--KQDC 164
D + I ++++ + V D+ I A HP + ++A A +DK + K DC
Sbjct: 257 DNLVYIWNLQTKEIVQKLQGHTDVVISTAC-----HPTENIIASAALENDKTIKLWKSDC 311
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 9/135 (6%)
Query: 53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG 112
+ +C F P GK+ A G++D L+ +WD + Q + + ++ + G + SG
Sbjct: 126 IRSVC--FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 113 SEDLTIDIAHVESGKKVYDICIQAATFTVAWHP--KQYLLAYACDDKYDRKQDCGNLKVF 170
S D T+ I + +G+ + I+ TVA P +Y+ A + D+ R D
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL-DRAVRVWDSET---- 238
Query: 171 GFLPEPIKKRKRGGT 185
GFL E + GT
Sbjct: 239 GFLVERLDSENESGT 253
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
IL+ H +++ P+G GS D V +WD C T D DG
Sbjct: 160 ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG 219
Query: 107 ALIASGSEDLTIDIAHVESG 126
IA+GS D + + E+G
Sbjct: 220 KYIAAGSLDRAVRVWDSETG 239
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 26/118 (22%)
Query: 29 PKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVG----------SKDALVSL 78
P+++D + H L+ H C++F G+Y A G S +LV+
Sbjct: 50 PREIDVEL--HKSLD-------HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR 100
Query: 79 W--DAA-----ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV 129
D+A E + D +R++ FS DG +A+G+ED I I +E+ K V
Sbjct: 101 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV 158
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDW----------PVRAISFSHDGALIASGS 113
GKY A GS D V +WD+ + +RLD V ++ F+ DG + SGS
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLV---ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS 275
Query: 114 EDLTIDIAHVESGKKVYD 131
D ++ + ++++ D
Sbjct: 276 LDRSVKLWNLQNANNKSD 293
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 56 ICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
+ I + P GKY A G+ D +++++D A + T + P+R+++FS D L+ + S+D
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 116 LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYL-LAYACDDKY 158
I K+YD+ T++ H L +A+ DD +
Sbjct: 228 GYI---------KIYDVQHANLAGTLSGHASWVLNVAFCPDDTH 262
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
+ A PV + F P +Y A G+ V+++ + + +I++S DG
Sbjct: 118 IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK 177
Query: 108 LIASGSEDLTIDIAHVESGKKVYDI-----CIQAATFTVAWHPKQYLLAYACDDKYDRKQ 162
+ASG+ D I+I + +GK ++ + I++ TF+ P LL A DD Y +
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFS----PDSQLLVTASDDGYIKIY 233
Query: 163 DCGNLKVFGFL 173
D + + G L
Sbjct: 234 DVQHANLAGTL 244
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRA- 99
+L+ Q L+ H + + ++ T A S DA + LWD I++ PV A
Sbjct: 69 RLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG--PVDAW 126
Query: 100 -ISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAA-TFTVAWHP-KQYLLAYACD 155
++FS D +A+G+ ++I VESGKK Y + + ++A+ P +YL + A D
Sbjct: 127 TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAID 185
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H + + F P +F S D V +WD TC+ TF V + ++ +G+
Sbjct: 244 LSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGS 303
Query: 108 LIASGSEDLTIDI 120
I S +D I I
Sbjct: 304 KIVSVGDDQEIHI 316
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 46 NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
++L H C+++D G+ G+ D +V +WD TC+ T Q R S D
Sbjct: 233 HVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQFD 288
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDI 132
G + SGS D +I + VE+G ++ +
Sbjct: 289 GIHVVSGSLDTSIRVWDVETGNCIHTL 315
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 41 KLEEQNILKAHPVTCI-CIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRA 99
+L+ +LK H I C++F G GS D + +W A C+RT V +
Sbjct: 107 ELKSPKVLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS 164
Query: 100 ISFSHDGALIASGSEDLTIDIAHVESGKKVYDI 132
+ +I SGS D T+ + + E+G+ ++ +
Sbjct: 165 SQMRDN--IIISGSTDRTLKVWNAETGECIHTL 195
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H T C+ K GS+DA + +WD C+ VR + + DG
Sbjct: 195 LYGHTSTVRCMHLHE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGR 250
Query: 108 LIASGSEDLTIDI 120
+ SG+ D + +
Sbjct: 251 RVVSGAYDFMVKV 263
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 70 GSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV 129
GS D + +W+A CI T VR + H+ ++ SGS D T+ + +E+G+ +
Sbjct: 175 GSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL-HEKRVV-SGSRDATLRVWDIETGQCL 232
Query: 130 Y 130
+
Sbjct: 233 H 233
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 58 IEFDPTGKYFAVGSKDALVSLW--DAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
+ + P G Y A S DA +W + + C+ T + + V++++++ G L+A+ S D
Sbjct: 67 VAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD 126
Query: 116 LTIDIAHVESGKKVYDICIQAATFT-----VAWHPKQYLLAYA 153
++ + V+ + Y+ + T V WHP Q LLA A
Sbjct: 127 KSVWVWEVDE-EDEYECVSVLNSHTQDVKHVVWHPSQELLASA 168
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 35/87 (40%)
Query: 28 SPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI 87
+P + +F FK H I F P A D S WD T +
Sbjct: 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL 308
Query: 88 RTFQRLDWPVRAISFSHDGALIASGSE 114
+T ++LD P+ A F+H+G + A S
Sbjct: 309 KTSEQLDQPISACCFNHNGNIFAYASS 335
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA----ELTCIR 88
D + EHH L H + + P G++ A G D LV++W +A ++
Sbjct: 226 DVRVAEHHVA----TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 281
Query: 89 TFQRLDWPVRAISFS---HDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP 145
TF + V+A+++ + G+ D I I +V SG + + + ++ W P
Sbjct: 282 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 341
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS 113
G Y AVG+ A V LWD + +R R S S + +++SGS
Sbjct: 170 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGS 217
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA----ELTCIR 88
D + EHH L H + + P G++ A G D LV++W +A ++
Sbjct: 215 DVRVAEHHVA----TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 270
Query: 89 TFQRLDWPVRAISFS---HDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP 145
TF + V+A+++ + G+ D I I +V SG + + + ++ W P
Sbjct: 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 330
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS 113
G Y AVG+ A V LWD + +R R S S + +++SGS
Sbjct: 159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGS 206
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 57 CIEFDPTG--KYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE 114
C+ F P S D V +W+ + T V ++ S DG+L ASG +
Sbjct: 522 CVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK 581
Query: 115 DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD 155
D + + + GKK+Y + + + + P +Y L A +
Sbjct: 582 DGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAATE 622
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI 120
G++ GS D + LWD A R F V +++FS D I S S D TI +
Sbjct: 442 GQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKL 498
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE 83
++ L H + P G A G KD +V LWD AE
Sbjct: 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ P + F G+ DA LWD E C +TF + + AI F +G A+GS+D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 118 I 118
Sbjct: 250 C 250
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIASGSED 115
I F P G FA GS DA L+D + T+ + + ++SFS G L+ +G +D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 116 LTIDI 120
++
Sbjct: 292 FNCNV 296
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ P + F G+ DA LWD E C +TF + + AI F +G A+GS+D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 118 I 118
Sbjct: 250 C 250
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIASGSED 115
I F P G FA GS DA L+D + T+ + + ++SFS G L+ +G +D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 116 LTIDI 120
++
Sbjct: 292 FNCNV 296
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ P + F G+ DA LWD E C +TF + + AI F +G A+GS+D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 118 I 118
Sbjct: 250 C 250
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIASGSED 115
I F P G FA GS DA L+D + T+ + + ++SFS G L+ +G +D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 116 LTIDI 120
++
Sbjct: 292 FNCNV 296
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ P + F G+ DA LWD E C +TF + + AI F +G A+GS+D T
Sbjct: 201 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 118 I 118
Sbjct: 261 C 261
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIASGSED 115
I F P G FA GS DA L+D + T+ + + ++SFS G L+ +G +D
Sbjct: 243 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 302
Query: 116 LTIDI 120
++
Sbjct: 303 FNCNV 307
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ P + F G+ DA LWD E C +TF + + AI F +G A+GS+D T
Sbjct: 190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 118 I 118
Sbjct: 250 C 250
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ--RLDWPVRAISFSHDGALIASGSED 115
I F P G FA GS DA L+D + T+ + + ++SFS G L+ +G +D
Sbjct: 232 ICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD 291
Query: 116 LTIDI 120
++
Sbjct: 292 FNCNV 296
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 50 AHPVTCICIEFDP--TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
H +C++ P TG F G D +WD C++ F+ + V ++ + G
Sbjct: 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD 253
Query: 108 LIASGSEDLTIDIAHVESGKKV 129
ASGS+D T + + + ++V
Sbjct: 254 AFASGSDDATCRLYDLRADREV 275
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
I+F PT + V LW+ +R+ Q + PVRA F I GS+D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 118 IDIAHVESGKKVYDICIQAATF-TVAWHPKQYLLAYACDD 156
I + + +G+KV D ++A HP + + DD
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 62 PTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIA 121
P Y S D + +WD +C+ T + V F +I SGSED T+ I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 122 HVESGK--KVYDICIQAATFTVAWHP---KQYLLA 151
+ + K K ++ ++ + + +A HP K Y+ +
Sbjct: 256 NSSTYKVEKTLNVGLERS-WCIATHPTGRKNYIAS 289
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI-RTFQRLDWPVRAISFS-HD 105
+AHP I PT Y GS D V LW+ + +TF+ + V ++F+ D
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 106 GALIASGSEDLTIDI 120
+ ASG D T+ +
Sbjct: 153 PSTFASGCLDRTVKV 167
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
I+F PT + V LW+ +R+ Q + PVRA F I GS+D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 118 IDIAHVESGKKVYDICIQAATF-TVAWHPKQYLLAYACDD 156
I + + +G+KV D ++A HP + + DD
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 62 PTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIA 121
P Y S D + +WD +C+ T + V F +I SGSED T+ I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 122 HVESGK--KVYDICIQAATFTVAWHP---KQYLLA 151
+ + K K ++ ++ + + +A HP K Y+ +
Sbjct: 256 NSSTYKVEKTLNVGLERS-WCIATHPTGRKNYIAS 289
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI-RTFQRLDWPVRAISFS-HD 105
+AHP I PT Y GS D V LW+ + +TF+ + V ++F+ D
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 106 GALIASGSEDLTIDI 120
+ ASG D T+ +
Sbjct: 153 PSTFASGCLDRTVKV 167
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 71 SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY 130
D +V W+ + F + + ++ S DG LIAS +D I + ++ + K +Y
Sbjct: 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 131 DICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE 175
+ Q F++A+ P +Y LA A +KVF P+
Sbjct: 233 TLSAQDEVFSLAFSPNRYWLAAAT---------ATGIKVFSLDPQ 268
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 71 SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY 130
D +V W+ + F + + ++ S DG LIAS +D I + ++ + K +Y
Sbjct: 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 131 DICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE 175
+ Q F++A+ P +Y LA A +KVF P+
Sbjct: 233 TLSAQDEVFSLAFSPNRYWLAAAT---------ATGIKVFSLDPQ 268
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 71 SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY 130
D +V W+ + F + + ++ S DG LIAS +D I + ++ + K +Y
Sbjct: 167 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 226
Query: 131 DICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE 175
+ Q F++A+ P +Y LA A +KVF P+
Sbjct: 227 TLSAQDEVFSLAFSPNRYWLAAAT---------ATGIKVFSLDPQ 262
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 71 SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY 130
D +V W+ + F + + ++ S DG LIAS +D I + ++ + K +Y
Sbjct: 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 131 DICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE 175
+ Q F++A+ P +Y LA A +KVF P+
Sbjct: 233 TLSAQDEVFSLAFSPNRYWLAAAT---------ATGIKVFSLDPQ 268
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 71 SKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY 130
D +V W+ + F + + ++ S DG LIAS +D I + ++ + K +Y
Sbjct: 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY 232
Query: 131 DICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE 175
+ Q F++A+ P +Y LA A +KVF P+
Sbjct: 233 TLSAQDEVFSLAFSPNRYWLAAAT---------ATGIKVFSLDPQ 268
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 97 VRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD 156
+ ++ S DG LIAS +D I + ++ + K Y + Q F++A+ P +Y LA A
Sbjct: 199 INTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAAT-- 256
Query: 157 KYDRKQDCGNLKVFGFLPE 175
+KVF P+
Sbjct: 257 -------ATGIKVFSLDPQ 268
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW---------PVRAI 100
AH + + P A GS D+ VS+W A E + RTF+ +D V+ +
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIW-AKEESADRTFE-MDLLAIIEGHENEVKGV 113
Query: 101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYAC 154
++S+DG +A+ S D ++ I + + Y+ CI V WHP + LLA +
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYE-CISVLQEHSQDVKHVIWHPSEALLASSS 172
Query: 155 DD-------KYDRKQDC 164
D YD +C
Sbjct: 173 YDDTVRIWKDYDDDWEC 189
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD----AAELTCIRTFQRLDWPVRAISF 102
I++ H + + G Y A S+D V +W+ E CI Q V+ + +
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161
Query: 103 SHDGALIASGSEDLTIDI 120
AL+AS S D T+ I
Sbjct: 162 HPSEALLASSSYDDTVRI 179
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 33 DFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAA----ELTCIR 88
D + EHH L H + + P G++ A G D LV++W +A ++
Sbjct: 135 DVRVAEHHVAT----LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 190
Query: 89 TFQRLDWPVRAISFS---HDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP 145
TF + V+A+++ + G+ D I I +V SG + + + ++ W P
Sbjct: 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP 250
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS 113
G Y AVG+ A V LWD + +R R S S + +++SGS
Sbjct: 79 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS--ARVGSLSWNSYILSSGS 126
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
I+F PT + V LW+ +R+ Q + PVRA F I GS+D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 118 IDIAHVESGKKVYDICIQAATF-TVAWHPKQYLLAYACDD 156
I + + +G+KV D ++A HP + + DD
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 4 QNFIPLLGLNPR-PSLYQSSVLT------DISPKQLDFKFKEHHKLEEQNILKAHPVTCI 56
++F+ + NP+ PS + S L + +F + N + +P+
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE-RGVNYVDYYPL--- 195
Query: 57 CIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDL 116
P Y S D + +WD +C+ T + V F +I SGSED
Sbjct: 196 -----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 117 TIDIAHVESGK--KVYDICIQAATFTVAWHP 145
T+ I + + K K ++ ++ + + +A HP
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERS-WCIATHP 280
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI-RTFQRLDWPVRAISFS-HD 105
+AHP I PT Y GS D V LW+ + +TF+ + V ++F+ D
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 106 GALIASGSEDLTIDI 120
+ ASG D T+ +
Sbjct: 153 PSTFASGCLDRTVKV 167
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
I+F PT + V +W+ +R+ Q + PVRA F I GS+D
Sbjct: 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFR 78
Query: 118 IDIAHVESGKKVYDICIQAATF-TVAWHPKQYLLAYACDD 156
I + + +G+KV D ++A HP + + DD
Sbjct: 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 62 PTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIA 121
P Y S D + +WD +C+ T + V F +I SGSED T+ I
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 122 HVESGK--KVYDICIQAATFTVAWHP 145
+ + K K ++ ++ + + +A HP
Sbjct: 256 NSSTYKVEKTLNVGLERS-WCIATHP 280
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI-RTFQRLDWPVRAISFS-HD 105
+AHP I PT Y GS D V LW+ + +TF+ + V ++F+ D
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 106 GALIASGSEDLTIDI 120
+ ASG D T+ +
Sbjct: 153 PSTFASGCLDRTVKV 167
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISF 102
E L H T I+ D KY GS D + LWD + C+ T++ PV+ + F
Sbjct: 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEF 123
Query: 103 S 103
S
Sbjct: 124 S 124
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH--D 105
+KAH +C F Y A S D V +WD+A + T+ V F++ +
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 106 GALIASGSEDL 116
L+A+GS D
Sbjct: 720 HLLLATGSNDF 730
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW---PVRAISFSHDGALI 109
V+C C+ P +Y A G +D + + EL R F VR I F+ DG +
Sbjct: 971 VSCCCLS--PHLEYVAFGDEDGAIKI---IELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1025
Query: 110 ASGSEDLTIDIAHVESGKKVY 130
S SED I + + ++G V+
Sbjct: 1026 ISSSEDSVIQVWNWQTGDYVF 1046
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
H T + F+ S D +W L+ + + + VR +FS DG
Sbjct: 1088 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1147
Query: 108 LIASGSEDLTIDIAHVESGKKVY 130
L+A+G ++ I I +V G+ ++
Sbjct: 1148 LLATGDDNGEIRIWNVSDGQLLH 1170
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 102 FSHDGALIASGSEDLTIDIAHVESGKKVYDI 132
FS DG IAS D T+ + E+G+K+ DI
Sbjct: 630 FSQDGQRIASCGADKTLQVFKAETGEKLLDI 660
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH--D 105
+KAH +C F Y A S D V +WD+A + T+ V F++ +
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 106 GALIASGSEDL 116
L+A+GS D
Sbjct: 713 HLLLATGSNDF 723
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW---PVRAISFSHDGALI 109
V+C C+ P +Y A G +D + + EL R F VR I F+ DG +
Sbjct: 964 VSCCCLS--PHLEYVAFGDEDGAIKI---IELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018
Query: 110 ASGSEDLTIDIAHVESGKKVY 130
S SED I + + ++G V+
Sbjct: 1019 ISSSEDSVIQVWNWQTGDYVF 1039
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
H T + F+ S D +W L+ + + + VR +FS DG
Sbjct: 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140
Query: 108 LIASGSEDLTIDIAHVESGKKVY 130
L+A+G ++ I I +V G+ ++
Sbjct: 1141 LLATGDDNGEIRIWNVSDGQLLH 1163
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDI 132
FS DG IAS D T+ + E+G+K+ DI
Sbjct: 622 CFSQDGQRIASCGADKTLQVFKAETGEKLLDI 653
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALI 109
+H V+ + I D G++ GS D + LWD T R F V +++FS D I
Sbjct: 86 SHFVSDVVISSD--GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 110 ASGSEDLTI 118
SGS D TI
Sbjct: 144 VSGSRDKTI 152
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 57 CIEFDPTGKYFAVGS--KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE 114
C+ F P + S D LV +W+ A + ++ S DG+L ASG +
Sbjct: 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 235
Query: 115 DLTIDIAHVESGKKVYDI----CIQAATFTVAWHPKQYLLAYA 153
D + + GK +Y + I A F+ P +Y L A
Sbjct: 236 DGQAMLWDLNEGKHLYTLDGGDIINALCFS----PNRYWLCAA 274
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALI 109
+H V+ + I D G++ GS D + LWD T R F V +++FS D I
Sbjct: 63 SHFVSDVVISSD--GQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 110 ASGSEDLTI 118
SGS D TI
Sbjct: 121 VSGSRDKTI 129
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 57 CIEFDPTGKYFAVGS--KDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSE 114
C+ F P + S D LV +W+ A + ++ S DG+L ASG +
Sbjct: 153 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK 212
Query: 115 DLTIDIAHVESGKKVYDI----CIQAATFTVAWHPKQYLLAYA 153
D + + GK +Y + I A F+ P +Y L A
Sbjct: 213 DGQAMLWDLNEGKHLYTLDGGDIINALCFS----PNRYWLCAA 251
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 96 PVRAISFS-HDGALIASGSEDLTIDIAHVESGKKVYD-----ICIQAAT---FTVAWHP- 145
PV I++ H+ +IASGSED T+ + + G V I ++ T VAWHP
Sbjct: 83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT 142
Query: 146 -KQYLLAYACDD 156
+ LL+ CD+
Sbjct: 143 AQNVLLSAGCDN 154
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%)
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV 123
G GS D + +WD A++ C+ + + + H+ S S D TI I +
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Query: 124 ESGKKVYDICIQAATFTVAWHPKQYLLAYACD 155
E+G+ +Y + A + ++L++ A D
Sbjct: 340 ENGELMYTLQGHTALVGLLRLSDKFLVSAAAD 371
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 39/92 (42%)
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV 123
G GS D + +WD A+ C+ + + + H+ S S D TI I +
Sbjct: 280 GNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Query: 124 ESGKKVYDICIQAATFTVAWHPKQYLLAYACD 155
E+G+ Y + A + ++L++ A D
Sbjct: 340 ENGELXYTLQGHTALVGLLRLSDKFLVSAAAD 371
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 41/104 (39%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L + C + P K D +++WD T +R FQ I S+DG
Sbjct: 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT 196
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLA 151
+ +G D T+ + G+++ + F++ + P LA
Sbjct: 197 KLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLA 240
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 19/114 (16%)
Query: 24 LTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE 83
L ++ Q +KF H K ++L + F P + G +D + +W+ +
Sbjct: 93 LWNLQNGQCQYKFLGHTK----DVLS--------VAFSPDNRQIVSGGRDNALRVWN-VK 139
Query: 84 LTCIRTFQR---LDWPVRAISFSH--DGALIASGSEDLTIDIAHVESGKKVYDI 132
C+ T R DW V + FS D +I SG D + + + +G+ V D+
Sbjct: 140 GECMHTLSRGAHTDW-VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDL 192
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT 85
KAH + P GKY A G KD + +WD LT
Sbjct: 209 FKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT 246
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Query: 37 KEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWP 96
KE+H + + ++ P+ + P YFA D + +W+ TF+ +
Sbjct: 158 KENHS-DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN 215
Query: 97 VRAISFSHDGALIASGSED---LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYA 153
V +S S +G IA+G +D L DI ++ ++ +D + +A++PK +A
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG 273
Query: 154 CD 155
D
Sbjct: 274 TD 275
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFS-HDGALIASGSEDLTIDIA 121
+G GSKD + +WD A+ + +++ V ++ S H ++ S SED I +
Sbjct: 138 SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
Query: 122 HVESGKKVYDICIQAATF---TVAWHPKQ 147
K I A + ++AWHP+Q
Sbjct: 198 DTRCPKPASQIGCSAPGYLPTSLAWHPQQ 226
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
FK + KL E +KAH +C F ++ A S D V +W++ + T+
Sbjct: 648 FKAETGEKLLE---IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEH 704
Query: 94 DWPVRAISFSHDG--ALIASGSED 115
V F++ L+A+GS D
Sbjct: 705 SEQVNCCHFTNSSHHLLLATGSSD 728
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%)
Query: 50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALI 109
H T + + F+ S D +W L + + + VR +FS D L+
Sbjct: 1089 CHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLL 1148
Query: 110 ASGSEDLTIDIAHVESGKKVY 130
A+G ++ I I +V +G+ ++
Sbjct: 1149 ATGDDNGEIRIWNVSNGELLH 1169
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA 81
K + + LE + IL H + +C+++D + GS D+ V +WD
Sbjct: 155 IKIWDKNTLECKRILTGHTGSVLCLQYDE--RVIITGSSDSTVRVWDV 200
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAIS-FSHD 105
+L H ++FD KY S D + +W+ + +RT L+ R I+ +
Sbjct: 251 VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRT---LNGHKRGIACLQYR 305
Query: 106 GALIASGSEDLTIDIAHVESG 126
L+ SGS D TI + +E G
Sbjct: 306 DRLVVSGSSDNTIRLWDIECG 326
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 8/122 (6%)
Query: 11 GLNPRPSLYQS---SVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYF 67
G P S Y++ ++ DI + +++ H L+ + C+++D +
Sbjct: 90 GNAPPNSFYRALYPKIIQDIETIESNWRCGRH-SLQRIHCRSETSKGVYCLQYDD--QKI 146
Query: 68 AVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGK 127
G +D + +WD L C R V + +D +I +GS D T+ + V +G+
Sbjct: 147 VSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGE 204
Query: 128 KV 129
+
Sbjct: 205 ML 206
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H C+++ + GS D + LWD C+R + + VR I F D
Sbjct: 292 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNK 347
Query: 108 LIASGSEDLTIDI 120
I SG+ D I +
Sbjct: 348 RIVSGAYDGKIKV 360
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 10/81 (12%)
Query: 96 PVRAISFS-HDGALIASGSEDLTIDIAHVESGKKVYD-----ICIQAAT---FTVAWHPK 146
PV I++ H+ +IASGSED T+ + + G V I ++ T VAWHP
Sbjct: 83 PVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPT 142
Query: 147 -QYLLAYACDDKYDRKQDCGN 166
Q +L A D D G
Sbjct: 143 AQNVLLSAGXDNVILVWDVGT 163
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 19/104 (18%)
Query: 29 PKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIR 88
P + F EH K + ++P G FA D + L++ + T
Sbjct: 179 PFKFKSTFGEHTKFVHS------------VRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226
Query: 89 TFQ-------RLDWPVRAISFSHDGALIASGSEDLTIDIAHVES 125
F+ V +++S DG IAS S D TI I +V +
Sbjct: 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 24/58 (41%)
Query: 23 VLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
V TD S K + + + +L N H C+ + P A GS D V +W+
Sbjct: 507 VATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI--RTFQRLDWPVR 98
L + I H + P+G Y A G V +WD + T I T PV+
Sbjct: 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 107
Query: 99 AISFSHDGALIASGSE 114
IS+ + IA+ E
Sbjct: 108 DISWDSESKRIAAVGE 123
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 34 FKFKEHH-KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR 92
F F+ H L++ N+ A+PV I EF P K+ D ++S W+ I+ F +
Sbjct: 236 FAFRCHRLNLKDTNL--AYPVNSI--EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 93 LDWPVRAISFSHDGALIASGSED 115
+ D L + S+D
Sbjct: 292 FNEDSVVKIACSDNILCLATSDD 314
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 34 FKFKEHH-KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR 92
F F+ H L++ N+ A+PV I EF P K+ D ++S W+ I+ F +
Sbjct: 236 FAFRCHRLNLKDTNL--AYPVNSI--EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 93 LDWPVRAISFSHDGALIASGSED 115
+ D L + S+D
Sbjct: 292 FNEDSVVKIACSDNILCLATSDD 314
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 34 FKFKEHH-KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR 92
F F+ H L++ N+ A+PV I EF P K+ D ++S W+ I+ F +
Sbjct: 236 FAFRCHRLNLKDTNL--AYPVNSI--EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 93 LDWPVRAISFSHDGALIASGSED 115
+ D L + S+D
Sbjct: 292 FNEDSVVKIACSDNILCLATSDD 314
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 34 FKFKEHH-KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR 92
F F+ H L++ N+ A+PV I EF P K+ D ++S W+ I+ F +
Sbjct: 236 FAFRCHRLNLKDTNL--AYPVNSI--EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291
Query: 93 LDWPVRAISFSHDGALIASGSED 115
+ D L + S+D
Sbjct: 292 FNEDSVVKIACSDNILCLATSDD 314
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 67 FAVGSKDALVSLWDAAELT-CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVES 125
F GS D V LWD + +RT+ + + ++ F DG +GS+D T + + +
Sbjct: 221 FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT 280
Query: 126 GKKV 129
G ++
Sbjct: 281 GHQL 284
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLA 151
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW +
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSXMAWTHDGKGMF 186
Query: 152 YACDDKYDRKQD 163
Y + D K D
Sbjct: 187 YNAYPQQDGKSD 198
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 178
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 178
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 178
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 178
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 178
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 178
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 178
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 178
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 178
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 97 VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+R +FS DG L ASGS+ +TI V+ K++ D+ + +AW
Sbjct: 126 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAW 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,687,737
Number of Sequences: 62578
Number of extensions: 502794
Number of successful extensions: 1784
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1468
Number of HSP's gapped (non-prelim): 302
length of query: 432
length of database: 14,973,337
effective HSP length: 102
effective length of query: 330
effective length of database: 8,590,381
effective search space: 2834825730
effective search space used: 2834825730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)