BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9319
(432 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1
Length = 351
Score = 178 bits (452), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 98/128 (76%), Gaps = 3/128 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
+ AHP CICI+FDP GKYFA GS DALVSLWD EL C+R F RLDWPVR +SFSHDG
Sbjct: 220 INAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGK 279
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD---KYDRKQDC 164
++AS SED IDIA VE+G K++++ ++ TFTVAWHPK+ LLA+ACDD KYD ++
Sbjct: 280 MLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREA 339
Query: 165 GNLKVFGF 172
G +K+FG
Sbjct: 340 GTVKLFGL 347
>sp|Q96J01|THOC3_HUMAN THO complex subunit 3 OS=Homo sapiens GN=THOC3 PE=1 SV=1
Length = 351
Score = 178 bits (451), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 98/128 (76%), Gaps = 3/128 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
+ AHP CICI+FDP GKYFA GS DALVSLWD EL C+R F RLDWPVR +SFSHDG
Sbjct: 220 INAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGK 279
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD---KYDRKQDC 164
++AS SED IDIA VE+G K++++ ++ TFTVAWHPK+ LLA+ACDD KYD ++
Sbjct: 280 MLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREA 339
Query: 165 GNLKVFGF 172
G +K+FG
Sbjct: 340 GTVKLFGL 347
>sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1
Length = 351
Score = 178 bits (451), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 79/128 (61%), Positives = 98/128 (76%), Gaps = 3/128 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
+ AHP CICI+FDP GKYFA GS DALVSLWD EL C+R F RLDWPVR +SFSHDG
Sbjct: 220 INAHPSNCICIKFDPMGKYFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGK 279
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD---KYDRKQDC 164
++AS SED IDIA VE+G K++++ ++ TFTVAWHPK+ LLA+ACDD KYD ++
Sbjct: 280 MLASASEDHFIDIAEVETGDKLWEVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREA 339
Query: 165 GNLKVFGF 172
G +K+FG
Sbjct: 340 GTVKLFGL 347
>sp|Q9CZJ1|UTP11_MOUSE Probable U3 small nucleolar RNA-associated protein 11 OS=Mus
musculus GN=Utp11l PE=2 SV=1
Length = 253
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 106/253 (41%), Positives = 161/253 (63%), Gaps = 9/253 (3%)
Query: 187 SSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKN 246
+++ KAAK Q+ HRER QP R++LGLLEKKKDY++RA+ ++KK+ L+ L+KKALEKN
Sbjct: 3 AAFRKAAKTRQREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKN 62
Query: 247 EDEFHTHMINARLVDGEH-FENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
DEF+ M A+L DG H F+ K E + EQ LM TQD KY+ +RV E +KIE++K
Sbjct: 63 PDEFYYKMTRAKLQDGVHIFKENKEEV--TAEQLKLMRTQDIKYIEMKRVAEAKKIERLK 120
Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSV- 364
+ H++D + + HVFF D + E ++FDV L+T PEL+ R NR ++E + + V
Sbjct: 121 SELHLLDFQGKQQKKHVFFFDTKKEVERFDVATHLQTAPELVDRVYNRPRIETLQKERVK 180
Query: 365 -AQHVKSKMKLVKARQAEK--LGKRLERERNLGVVERKLFVQRFLSEKPK--LVKPGTPD 419
A ++ K RQ + L +R+ERE+ L VV +K+ ++ L +K + VK T +
Sbjct: 181 GATPQTGLKRIAKERQKQYDCLTQRIEREKQLFVVAQKIQTRKDLMDKTQKVKVKKETVN 240
Query: 420 SAPVYKWKFERKK 432
S +Y+++ RK+
Sbjct: 241 SPAIYRFQTRRKR 253
>sp|Q9Y3A2|UTP11_HUMAN Probable U3 small nucleolar RNA-associated protein 11 OS=Homo
sapiens GN=UTP11L PE=1 SV=2
Length = 253
Score = 167 bits (423), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 105/252 (41%), Positives = 158/252 (62%), Gaps = 7/252 (2%)
Query: 187 SSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKN 246
+++ KAAK Q+ HRER QP R+ LGLLEKKKDY++RAD + KK++ L+ L+KKALEKN
Sbjct: 3 AAFRKAAKSRQREHRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKN 62
Query: 247 EDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKA 306
DEF+ M +L DG H E E + EQ LM TQD KY+ +RV E +KIE++K+
Sbjct: 63 PDEFYYKMTRVKLQDGVHIIKETKE-EVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKS 121
Query: 307 GNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSV-- 364
H++D + +N HVFF D + E ++FDV L+T PEL+ R NR ++E + + V
Sbjct: 122 ELHLLDFQGKQQNKHVFFFDTKKEVEQFDVATHLQTAPELVDRVFNRPRIETLQKEKVKG 181
Query: 365 AQHVKSKMKLVKARQAEK--LGKRLERERNLGVVERKLFVQRFLSEKPK--LVKPGTPDS 420
+ ++ K RQ + L +R+ERE+ L V+ +K+ ++ L +K + VK T +S
Sbjct: 182 VTNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNS 241
Query: 421 APVYKWKFERKK 432
+YK++ RK+
Sbjct: 242 PAIYKFQSRRKR 253
>sp|Q9W3C0|UTP11_DROME Probable U3 small nucleolar RNA-associated protein 11 OS=Drosophila
melanogaster GN=CG1789 PE=2 SV=1
Length = 237
Score = 164 bits (416), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 108/253 (42%), Positives = 153/253 (60%), Gaps = 22/253 (8%)
Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
MSSW A+K NQK HRERHQPE R+ LG LEKKKDY+ RA KK+KTL++L ++A K
Sbjct: 1 MSSWKNASKSNQKVHRERHQPESRQHLGFLEKKKDYKKRAIDAQKKQKTLKLLYRRAQNK 60
Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
N DEF+ HMIN++L + EH E + E + EQ LM TQD KYV +R ME++KIE++K
Sbjct: 61 NPDEFYHHMINSKLSNDEHHEKDTKD-EHTPEQLALMQTQDLKYVVMKRTMERKKIERLK 119
Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
A +DA N + F +E + D+ + L LK +D E
Sbjct: 120 ASLVDVDAIKGAANKRIKF--DEDGYMELDMGEWL-------------LKHDDEEEEEEK 164
Query: 366 QHVKSKMK--LVKARQAEKLGKRLERERNLGVVERKLFVQRFLSE----KPKLVKPGTPD 419
+ + +K ++ +L KR +RER LG+V++K+ ++ L + KP+ +KPGT D
Sbjct: 165 KKKSKTTEPNPIKQQRINELKKREQRERELGIVQQKIQLKNTLKQPRLLKPRKIKPGTKD 224
Query: 420 SAPVYKWKFERKK 432
SAPVYK+++ERKK
Sbjct: 225 SAPVYKFRYERKK 237
>sp|Q8R5K5|UTP11_RAT Probable U3 small nucleolar RNA-associated protein 11 OS=Rattus
norvegicus GN=Utp11l PE=2 SV=1
Length = 253
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 103/252 (40%), Positives = 157/252 (62%), Gaps = 7/252 (2%)
Query: 187 SSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKN 246
+++ KA K Q+ +RER QP R+ LGLLEKKKDY++RAD + KK++ L+ L+KKALEKN
Sbjct: 3 AAFRKAVKSRQREYRERSQPGFRKHLGLLEKKKDYKLRADDYRKKQEYLKALRKKALEKN 62
Query: 247 EDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKA 306
DEF+ M +L DG H E E + EQ LM TQD KY+ +RV E +KIE++K+
Sbjct: 63 PDEFYYKMTRVKLQDGVHIIKETKE-EVTPEQLKLMRTQDVKYIEMKRVAEAKKIERLKS 121
Query: 307 GNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSV-- 364
H++D + +N HVFF D + E ++FDV L+T PEL+ R NR ++E + + V
Sbjct: 122 ELHLLDFQGKQQNRHVFFFDTKKEVEQFDVAAHLQTAPELVDRVFNRPRIETLQKEKVKG 181
Query: 365 AQHVKSKMKLVKARQAEK--LGKRLERERNLGVVERKLFVQRFLSEKPK--LVKPGTPDS 420
+ ++ K RQ + L +R+ERE+ L V+ +K+ ++ L +K + VK T +S
Sbjct: 182 VTNQTGLKRIAKERQKQYNCLTQRIEREKKLFVIAQKIQTRKDLMDKTQKVKVKKETVNS 241
Query: 421 APVYKWKFERKK 432
+YK++ RK+
Sbjct: 242 PAIYKFQSRRKR 253
>sp|Q09462|UTP11_CAEEL Probable U3 small nucleolar RNA-associated protein 11
OS=Caenorhabditis elegans GN=C16C10.2 PE=3 SV=1
Length = 262
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/264 (42%), Positives = 157/264 (59%), Gaps = 19/264 (7%)
Query: 186 MSSWVKAAK--VNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKAL 243
MSS V +K Q+ HRER QPE RRK G LEKKKDY++RA+ + KK+ T++ LKK A+
Sbjct: 1 MSSLVSISKKLSGQRQHRERSQPEARRKYGELEKKKDYKLRAEDYQKKRDTIKKLKKSAM 60
Query: 244 EKNEDEFHTHMINARL-VDGEHFENPKPEAEDSEE--QKLLMDTQDAKYVSSRRVMEKRK 300
+KN+DE+H HM+N+ DG HF + K EAE++E QK L +D +YV + EK+K
Sbjct: 61 DKNQDEYHHHMVNSETWADGRHF-DKKTEAEETETQIQKKLGSLKDLEYVKFKLNEEKKK 119
Query: 301 IEKIKAGNHMIDAA-NQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDI 359
I+++K H D++ N NTH FVD ++EAK FD T +L R+ NRLK ED
Sbjct: 120 IDEMKGELHFADSSLNGKGNTHTVFVDTDSEAKSFDPRVYFDTTTSMLSRQFNRLKNEDF 179
Query: 360 AEMSV-----AQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSE------ 408
++ + V+ ++ + R E L KR+ER + L VV KL +++ L+
Sbjct: 180 QNKTIIGAGTKEQVRKADRVRRTRYNE-LIKRVERAKELQVVVDKLELKKQLAAGSKSEL 238
Query: 409 KPKLVKPGTPDSAPVYKWKFERKK 432
KP+ VK A VYKW +ERKK
Sbjct: 239 KPQKVKKAKAMRAAVYKWTYERKK 262
>sp|Q9USL1|YJKA_SCHPO Uncharacterized WD repeat-containing protein C18B5.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPCC18B5.10c PE=4 SV=1
Length = 309
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 77/125 (61%), Gaps = 5/125 (4%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
+KAH C CIEF P ++ A+G DA+ SLWD EL C R+ R+D+P+R +SFS+D
Sbjct: 190 IKAHNSNCFCIEFSPDNRHLAIGGADAITSLWDPQELICERSITRMDYPIRTLSFSYDSR 249
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNL 167
+ASGSED +DIA ++G +++ I VAWHP +++LAYA + + L
Sbjct: 250 YLASGSEDRYVDIADTKTGDQIWKIPTNGPLNKVAWHPTKHILAYAVSEP-----NSSGL 304
Query: 168 KVFGF 172
K+FG
Sbjct: 305 KIFGL 309
Score = 36.2 bits (82), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 60 FDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR----AISFSHDGALIASGSED 115
+ P+G Y S+D ++S DA E + TFQ+ P SFS D + +G
Sbjct: 119 WSPSGNYCCASSRDDMLSFIDARERRIMETFQQ---PCETNECCWSFSEDLFFMTTGLG- 174
Query: 116 LTIDIAHVESGKKVYDI 132
T+ I S K+VYDI
Sbjct: 175 -TVQIMEWPSLKRVYDI 190
>sp|Q10106|UTP11_SCHPO Probable U3 small nucleolar RNA-associated protein 11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC18G6.06 PE=3 SV=1
Length = 249
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 91/251 (36%), Positives = 138/251 (54%), Gaps = 6/251 (2%)
Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
MSS K A +K HRER QP +RRK GLLEK+KDY RA + K+K L+ L++KALE+
Sbjct: 1 MSSSFKNA-GQRKNHRERAQPFERRKWGLLEKRKDYAQRAQDYKTKQKKLKRLREKALER 59
Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
N DEF+ M + + +G E + D + K+L TQD ++ R +E+ KI+ ++
Sbjct: 60 NPDEFYHEMTHKKTKNGVPLEQREDSTIDMDTIKILK-TQDIGWIRHHRNVERAKIDHLE 118
Query: 306 AGNHMIDA-ANQIEN-THVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMS 363
H + A N+ E+ H FVDN EAK F+ + +T +L+ R NR+K + I
Sbjct: 119 QQMHTVGAHRNKNESRKHTIFVDNVKEAKSFNPAEFFQTTDDLVGRTENRVKKDQIENNE 178
Query: 364 VA-QHVKSKM-KLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSA 421
+ Q K+ +K + A +L R +R++ L E ++ + R L K K +
Sbjct: 179 LTNQPFSGKLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGGRQKKKVVNGK 238
Query: 422 PVYKWKFERKK 432
PVYKW+ ERK+
Sbjct: 239 PVYKWRNERKR 249
>sp|Q8S1Z1|UTP11_ORYSJ Probable U3 small nucleolar RNA-associated protein 11 OS=Oryza
sativa subsp. japonica GN=Os01g0810000 PE=2 SV=2
Length = 229
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 91/259 (35%), Positives = 143/259 (55%), Gaps = 42/259 (16%)
Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
MSS A + ++ H+ER QPE R+K GLLEK KDY VRA F++K++T++ LK+KA +
Sbjct: 1 MSSLRNA--IQRRAHKERAQPESRKKFGLLEKHKDYIVRAKAFHQKEETIRKLKEKASFR 58
Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAED-SEEQKLLMDTQDAKYVSSRRVMEKRKIEKI 304
N DEF+ MIN++ VDG H PKPEA +E++ +L+ T+D Y+ EK+KIEK+
Sbjct: 59 NPDEFYFKMINSKTVDGIH--RPKPEANKYTEDELMLLKTKDMGYILQGIQSEKKKIEKL 116
Query: 305 KAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSV 364
+ H +D N+ N HV+F ++ E +K + + +K++ L +++I
Sbjct: 117 SSMLHELD--NKRPNKHVYFAEDREE---------VKEIQSRIEQKSSSLGLDNIP---- 161
Query: 365 AQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPG-------- 416
S++K A +L +R +R + L KL+ L + +L KPG
Sbjct: 162 -----SRIKRKTASSYRELEERKQRVQKL----EKLYADMALQK--ELKKPGRKRKLRED 210
Query: 417 ---TPDSAPVYKWKFERKK 432
S PVYKW+ +RK+
Sbjct: 211 EIENQTSRPVYKWRAQRKR 229
>sp|Q9M223|UTP11_ARATH Probable U3 small nucleolar RNA-associated protein 11
OS=Arabidopsis thaliana GN=At3g60360 PE=1 SV=1
Length = 228
Score = 112 bits (280), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 137/253 (54%), Gaps = 31/253 (12%)
Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
MSS A + + H+ER QPE R++ G+LEK KDY +RA+ ++KK++TL+IL++KA K
Sbjct: 1 MSSLRNA--IPRPAHKERSQPEARKRFGILEKHKDYIIRANAYHKKQETLKILRQKAAFK 58
Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAED-SEEQKLLMDTQDAKYVSSRRVMEKRKIEKI 304
N DEF+ MIN++ VDG H PK E S E+ ++M TQD YV + EK KI+K+
Sbjct: 59 NPDEFNFKMINSKTVDGRH--RPKDEVNKYSAEELMIMKTQDIGYVFQKWQSEKNKIDKL 116
Query: 305 KAGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSV 364
A + +Q HV++ ++ EA++ +V + K+ DI+ + +
Sbjct: 117 TAS--LQCTGDQSSRRHVYYAEDREEARELEVQGRSKS---------------DISTVEI 159
Query: 365 AQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPG-----TPD 419
+ +K KM R L R R ++L + + +Q+ L +K + K P+
Sbjct: 160 PKDIKKKM----DRSYRDLEGRKSRAKDLEKLYTDMSMQKELQKKGRKRKLRDDELLNPN 215
Query: 420 SAPVYKWKFERKK 432
VYKW+ +RK+
Sbjct: 216 GKAVYKWRADRKR 228
>sp|P14197|AAC3_DICDI WD repeat-containing protein AAC3 OS=Dictyostelium discoideum
GN=AAC3 PE=2 SV=2
Length = 478
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H + C+EFDPTGKY A GS D++VSLWD ++ C++TF + +P R++SFS DG
Sbjct: 355 LYGHTASIYCMEFDPTGKYLAAGSADSIVSLWDIEDMMCVKTFIKSTFPCRSVSFSFDGQ 414
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNL 167
IA+ S + TI+I H+ES + ++ I + ++ WHP LLAYA + + K ++
Sbjct: 415 FIAASSFESTIEIFHIESSQPIHTIECSGVS-SLMWHPTLPLLAYAPEINENNKDP--SI 471
Query: 168 KVFGF 172
+VFG+
Sbjct: 472 RVFGY 476
>sp|Q55C50|UTP11_DICDI Probable U3 small nucleolar RNA-associated protein 11
OS=Dictyostelium discoideum GN=utp11 PE=3 SV=1
Length = 250
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 96/161 (59%), Gaps = 5/161 (3%)
Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
MSS + Q+ +ER QPE +K G LE+KKDY RA +N K+ TL+ LK +A K
Sbjct: 1 MSSMNLRRLLPQRAKQERPQPESSKKKGFLERKKDYVERAKDYNNKRDTLKKLKLQAAFK 60
Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
N DEF+ MI+++LVDG H E K + +EQ + + TQD Y+ S+R + +KIE+++
Sbjct: 61 NPDEFNYKMISSKLVDGVHSEISKTSLK--KEQIIDIKTQDILYLQSKRRADDKKIERLQ 118
Query: 306 AGNHMIDAANQIENT-HVFFVDNEAEAKKFDVVKQLKTLPE 345
A +D+ +E T + +VD+E E K F K T+P+
Sbjct: 119 ATLQYMDSG--LEPTEQIIYVDDEKEVKNFSATKYFDTVPD 157
>sp|P34247|UTP11_YEAST U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP11 PE=1
SV=2
Length = 250
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 17/249 (6%)
Query: 195 VNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHM 254
V +K HRER Q R + G LEK KDY RA F++K+ TL++L++KA E+N DE++ H
Sbjct: 8 VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYY-HA 66
Query: 255 INARLVD--GEHFENPKPEAED---SEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNH 309
+++R D G + + ED S +Q L+ TQD+ YV + R +E +K+EK A
Sbjct: 67 MHSRKTDAKGLLISSRHGDEEDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEK-GAKQL 125
Query: 310 MIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAE-MSVAQHV 368
M ++ H FVD+ + +F K T E++ R NRL + +A+ +S ++
Sbjct: 126 MFKSS----GNHTIFVDSREKMNEFTPEKFFNTTSEMVNRSENRLTKDQLAQDISNNRNA 181
Query: 369 KSKM-----KLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPV 423
S M K ++ +++ + L+RE L V++++ QR L +K K
Sbjct: 182 SSIMPKESLDKKKLKKFKQVKQHLQRETQLKQVQQRMDAQRELLKKGSKKKIVDSSGKIS 241
Query: 424 YKWKFERKK 432
+KWK +RK+
Sbjct: 242 FKWKKQRKR 250
>sp|A6ZZL7|UTP11_YEAS7 U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces
cerevisiae (strain YJM789) GN=UTP11 PE=3 SV=1
Length = 250
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 17/249 (6%)
Query: 195 VNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHM 254
V +K HRER Q R + G LEK KDY RA F++K+ TL++L++KA E+N DE++ H
Sbjct: 8 VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYY-HA 66
Query: 255 INARLVD--GEHFENPKPEAED---SEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNH 309
+++R D G + + ED S +Q L+ TQD+ YV + R +E +K+EK A
Sbjct: 67 MHSRKTDAKGLLISSRHGDEEDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEK-GAKQL 125
Query: 310 MIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAE-MSVAQHV 368
M ++ H FVD+ + +F K T E++ R NRL + +A+ +S ++
Sbjct: 126 MFKSS----GNHTIFVDSREKMNEFTPEKFFNTTSEMVNRSENRLTKDQLAQDISNNRNA 181
Query: 369 KSKM-----KLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPV 423
S M K ++ +++ + L+RE L V++++ QR L +K K
Sbjct: 182 SSIMPKESLDKKKLKKFKQVKQHLQRETQLKQVQQRMDAQRELLKKGSKKKIVDSSGKIS 241
Query: 424 YKWKFERKK 432
+KWK +RK+
Sbjct: 242 FKWKKQRKR 250
>sp|B5VM59|UTP11_YEAS6 U3 small nucleolar RNA-associated protein 11 OS=Saccharomyces
cerevisiae (strain AWRI1631) GN=UTP11 PE=3 SV=1
Length = 250
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 133/249 (53%), Gaps = 17/249 (6%)
Query: 195 VNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHM 254
V +K HRER Q R + G LEK KDY RA F++K+ TL++L++KA E+N DE++ H
Sbjct: 8 VQKKQHRERSQLTSRSRYGFLEKHKDYVKRAQDFHRKQSTLKVLREKAKERNPDEYY-HA 66
Query: 255 INARLVD--GEHFENPKPEAED---SEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNH 309
+++R D G + + ED S +Q L+ TQD+ YV + R +E +K+EK A
Sbjct: 67 MHSRKTDAKGLLISSRHGDEEDESLSMDQVKLLKTQDSNYVRTLRQIELKKLEK-GAKQL 125
Query: 310 MIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAE-MSVAQHV 368
M ++ H FVD+ + +F K T E++ R NRL + +A+ +S ++
Sbjct: 126 MFKSS----GNHTIFVDSREKMNEFTPEKFFNTTSEMVNRSENRLTKDQLAQDISNNRNA 181
Query: 369 KSKM-----KLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPV 423
S M K ++ +++ + L+RE L V++++ QR L +K K
Sbjct: 182 SSIMPKESLDKKKLKKFKQVKQHLQRETQLKQVQQRMDAQRELLKKGSKKKIVDSSGKIS 241
Query: 424 YKWKFERKK 432
+KWK +RK+
Sbjct: 242 FKWKKQRKR 250
>sp|P78706|RCO1_NEUCR Transcriptional repressor rco-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rco-1 PE=4 SV=2
Length = 604
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%)
Query: 42 LEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAIS 101
L+++NI + + F P GKY A G++D L+ +WD T TF + + ++
Sbjct: 334 LQDENIDLTGDLYIRSVCFSPDGKYLATGAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLD 393
Query: 102 FSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRK 161
FS DG IASGS D T+ + +E+G+ + I+ TVA P + +A DK R
Sbjct: 394 FSRDGRTIASGSGDRTVRLWDIETGQNTSVLSIEDGVTTVAISPDKQFVAAGSLDKSVRV 453
Query: 162 QD 163
D
Sbjct: 454 WD 455
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 16/85 (18%)
Query: 53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF--QRLDWP------VRAISFSH 104
VT + I P ++ A GS D V +WD +R + +RL+ P V +++FS
Sbjct: 430 VTTVAIS--PDKQFVAAGSLDKSVRVWD------MRGYLAERLEGPDGHKDSVYSVAFSP 481
Query: 105 DGALIASGSEDLTIDIAHVESGKKV 129
DG + SGS D TI + + + + +
Sbjct: 482 DGRNLVSGSLDKTIKMWELSAPRGI 506
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 42 LEEQNILK---AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
LE IL+ H + ++F P G+Y A GS D+ + LWD C+ ++ VR
Sbjct: 92 LEAAKILRTLMGHKASISSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQAVR 151
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ-AATFTVAWHPKQYLLAYACDDK 157
++FS DG +AS S+D T+ + + +GK + + +A V +HP +YLLA D+
Sbjct: 152 CLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSADR 211
Query: 158 YDRKQDCGNLKVFG 171
+ D + G
Sbjct: 212 TVKLWDLEKFNMIG 225
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 73/184 (39%), Gaps = 24/184 (13%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
+H ++F P A GS D V LWD + I + + VR++ F+ DG+
Sbjct: 185 FTSHTSAVNVVQFHPNEYLLASGSADRTVKLWDLEKFNMIGSSEGETGVVRSVLFNPDGS 244
Query: 108 LIASGSE----------DLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK 157
+ SGSE D D+ HV G KV D+ I + + Y D
Sbjct: 245 CLYSGSENTLRVYGWEPDRCFDVVHVGWG-KVSDLAISNNQMIAVSYSHTNVSWYVVD-- 301
Query: 158 YDRKQDCGNLKVFGFL---PEPIKKRKRGGTM-------SSWVKAAKVNQKTHRERHQPE 207
+R + G++ + G + P P G T+ ++ ++ Q + +R PE
Sbjct: 302 LNRVKKSGSV-IQGLIQDKPIPAPSSALGTTLRRNYERPTTSCTGQEMKQSSEADRRSPE 360
Query: 208 DRRK 211
R+
Sbjct: 361 GERR 364
>sp|Q8H0T9|KTNB1_ARATH Katanin p80 WD40 repeat-containing subunit B1 homolog
OS=Arabidopsis thaliana GN=At5g23430 PE=2 SV=3
Length = 837
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 42 LEEQNI---LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
LEE I L H CI ++F P G++FA GS D + +WD + CI T++ V
Sbjct: 88 LEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVN 147
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGK-----KVYDICIQAATFTVAWHPKQYLLAYA 153
+ F+ DG + SG ED + + + +GK K ++ IQ+ F HP ++LLA
Sbjct: 148 VLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDF----HPHEFLLATG 203
Query: 154 CDDKYDRKQDCGNLKVFG 171
D+ + D ++ G
Sbjct: 204 SADRTVKFWDLETFELIG 221
>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1
Length = 1526
Score = 68.6 bits (166), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
I + H + F+ G A GS D V LWD + C FQ VR++ FS DG
Sbjct: 985 IFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDG 1044
Query: 107 ALIASGSEDLTIDIAHVESGKKVYDI-----CIQAATFTVAWHPKQYLLAYACDDKYDRK 161
A++ASGS+D T+ + + SG +Y + C+++ F+ P +LA DD+ R
Sbjct: 1045 AMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFS----PDGAMLASGGDDQIVRL 1100
Query: 162 QD 163
D
Sbjct: 1101 WD 1102
Score = 63.2 bits (152), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSHDGALIASGSEDL 116
+ F+P G A GS D V LWD + C+ TFQ +W V +++F+ DG+++ASGS D
Sbjct: 1248 VVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNW-VNSVAFNPDGSMLASGSGDQ 1306
Query: 117 TIDIAHVESGKKVYDICIQAA-TFTVAWHPKQYLLAYACDDKYDR 160
T+ + + S K ++ + +V + P +LA DD+ R
Sbjct: 1307 TVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVR 1351
Score = 62.0 bits (149), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ F+P G A GS D V LW+ + C+ TFQ V +++FS DG ++ASGS+D T
Sbjct: 1290 VAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQT 1349
Query: 118 IDIAHVESGKKVY 130
+ + + SG+ +Y
Sbjct: 1350 VRLWSISSGECLY 1362
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 60 FDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSHDGALIASGSEDLTI 118
F P G A GS D +V LWD + C+ T Q +W V A++FS DGA +ASGS D T+
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNW-VNAVAFSPDGATLASGSGDQTV 1182
Query: 119 DIAHVESGKKVYDICIQAATF---TVAWHPKQYLLAYACDDKYDR 160
+ + S K +Y +Q T +V ++P LA D+ R
Sbjct: 1183 RLWDISSSKCLY--ILQGHTSWVNSVVFNPDGSTLASGSSDQTVR 1225
Score = 60.1 bits (144), Expect = 3e-08, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 35 KFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLD 94
+F E +E K H + F GK A GS D V LWD + C++TF+
Sbjct: 889 RFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHT 948
Query: 95 WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAAT---FTVAWHPKQYLLA 151
VR++ FS + ++ASGS D T+ + + SG+ +Y Q T ++VA++ +LA
Sbjct: 949 SRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLY--IFQGHTGWVYSVAFNLDGSMLA 1006
Query: 152 YACDDKYDRKQDCGNLKVF 170
D+ R D + + F
Sbjct: 1007 TGSGDQTVRLWDISSSQCF 1025
Score = 59.3 bits (142), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF-QRLDWPVRAISFSHDG 106
+ H + F P G A GS D V LW + C+ TF +W V ++ FS DG
Sbjct: 1322 FQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNW-VGSVIFSPDG 1380
Query: 107 ALIASGSEDLTIDIAHVESGKKVYDICIQAA-TFTVAWHPKQYLLAYACDDKYDR 160
A++ASGS D T+ + + SGK +Y + ++ + P LLA DD+ R
Sbjct: 1381 AILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVR 1435
Score = 58.9 bits (141), Expect = 6e-08, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 5/117 (4%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
IL+ H + F+P G A GS D V LW+ C+ TFQ V ++ F+ DG
Sbjct: 1195 ILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDG 1254
Query: 107 ALIASGSEDLTIDIAHVESGKKVYDICIQAAT---FTVAWHPKQYLLAYACDDKYDR 160
+++ASGS D T+ + + S K ++ Q T +VA++P +LA D+ R
Sbjct: 1255 SMLASGSSDKTVRLWDISSSKCLH--TFQGHTNWVNSVAFNPDGSMLASGSGDQTVR 1309
Score = 58.9 bits (141), Expect = 7e-08, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 67/153 (43%), Gaps = 19/153 (12%)
Query: 20 QSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCI-CIEFDPTGKYFAVGSKDALVSL 78
Q+ L DIS Q + F+ H +C+ + F G A GS D V L
Sbjct: 1012 QTVRLWDISSSQCFYIFQGH-------------TSCVRSVVFSSDGAMLASGSDDQTVRL 1058
Query: 79 WDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAAT 138
WD + C+ T Q VR++ FS DGA++ASG +D + + + SG +Y +Q T
Sbjct: 1059 WDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLY--TLQGYT 1116
Query: 139 FTV---AWHPKQYLLAYACDDKYDRKQDCGNLK 168
V + P LA D+ R D + K
Sbjct: 1117 SWVRFLVFSPNGVTLANGSSDQIVRLWDISSKK 1149
Score = 58.5 bits (140), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 60 FDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTID 119
F P G A GS D V LW + C+ T Q + V +I FS DG L+ASGS+D T+
Sbjct: 1376 FSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVR 1435
Query: 120 IAHVESGKKVYDICIQAATF-TVAWHPKQYLLAYACDDK 157
+ ++ SG+ +Y + + +VA+ +LA DD+
Sbjct: 1436 LWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDE 1474
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H I F P G A GS D V LW+ + C+ T VR+++FS DG
Sbjct: 1406 LQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGL 1465
Query: 108 LIASGSEDLTIDIAHVESGK 127
++ASGS+D TI + V++G+
Sbjct: 1466 ILASGSDDETIKLWDVKTGE 1485
Score = 55.8 bits (133), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 54 TCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGS 113
+ + + F P GK FA G +V W+AA + T + + V ++ FS DG ++ASGS
Sbjct: 866 SVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGS 925
Query: 114 EDLTIDIAHVESGKKVYDICIQ------AATFTVAWHPKQYLLAYACDDKYDRKQD 163
+D T+ + + SG+ C++ + +V + P +LA D+ R D
Sbjct: 926 DDQTVRLWDISSGQ-----CLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWD 976
Score = 54.7 bits (130), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 5/124 (4%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + F P G A GS D V LWD + C+ Q V ++ F+ DG+
Sbjct: 1154 LQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGS 1213
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATF---TVAWHPKQYLLAYACDDKYDRKQDC 164
+ASGS D T+ + + S K + Q T +V ++P +LA DK R D
Sbjct: 1214 TLASGSSDQTVRLWEINSSKCL--CTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDI 1271
Query: 165 GNLK 168
+ K
Sbjct: 1272 SSSK 1275
Score = 54.7 bits (130), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + F P G A G D +V LWD + C+ T Q VR + FS +G
Sbjct: 1070 LQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGV 1129
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAAT---FTVAWHPKQYLLAYACDDKYDRKQDC 164
+A+GS D + + + S K +Y +Q T VA+ P LA D+ R D
Sbjct: 1130 TLANGSSDQIVRLWDISSKKCLY--TLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI 1187
Query: 165 GNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVN 196
+ K L +G T SWV + N
Sbjct: 1188 SSSKCLYIL--------QGHT--SWVNSVVFN 1209
Score = 53.5 bits (127), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
K H + F P A GS D V LWD + C+ FQ V +++F+ DG+
Sbjct: 944 FKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGS 1003
Query: 108 LIASGSEDLTIDIAHVESGKKVYDI-----CIQAATFTVAWHPKQYLLAYACDDKYDRKQ 162
++A+GS D T+ + + S + Y C+++ F+ +LA DD+ R
Sbjct: 1004 MLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFS----SDGAMLASGSDDQTVRLW 1059
Query: 163 D 163
D
Sbjct: 1060 D 1060
>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora
curvata GN=pkwA PE=3 SV=1
Length = 742
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 22/128 (17%)
Query: 44 EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISF 102
E+++L+A + + F P G GS D+ V LWD A + TF+ DW VRA++F
Sbjct: 619 ERDVLQAPAENVVSLAFSPDGSMLVHGS-DSTVHLWDVASGEALHTFEGHTDW-VRAVAF 676
Query: 103 SHDGALIASGSEDLTIDIAHVESGKKVYDICIQ----------AATFTVAWHPKQYLLAY 152
S DGAL+ASGS+D TI +++D+ Q +VA+HP+ LA
Sbjct: 677 SPDGALLASGSDDRTI---------RLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLAS 727
Query: 153 ACDDKYDR 160
A +D R
Sbjct: 728 ASEDGTIR 735
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISF 102
+E + L+ H + F P G A GS DA V LWD A F+ V I+F
Sbjct: 492 DELHTLEGHTDWVRAVAFSPDGALLASGSDDATVRLWDVAAAEERAVFEGHTHYVLDIAF 551
Query: 103 SHDGALIASGSEDLTIDIAHVESGKKVYDICIQAAT---FTVAWHPKQYLLAYACDDKYD 159
S DG+++ASGS D T + +V +G + ++ T + VA+ P ++A D
Sbjct: 552 SPDGSMVASGSRDGTARLWNVATGTE--HAVLKGHTDYVYAVAFSPDGSMVASGSRDGTI 609
Query: 160 RKQDCGNLK 168
R D K
Sbjct: 610 RLWDVATGK 618
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 40 HKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVR 98
H+L E IL + + F P G A GS D L+ +WD A + T + DW VR
Sbjct: 448 HELNEPRILTTD-REAVAVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDW-VR 505
Query: 99 AISFSHDGALIASGSEDLTI---DIAHVE 124
A++FS DGAL+ASGS+D T+ D+A E
Sbjct: 506 AVAFSPDGALLASGSDDATVRLWDVAAAE 534
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%)
Query: 57 CIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDL 116
+ F P G A GS D + LWD A T + PV +++F +G +AS SED
Sbjct: 673 AVAFSPDGALLASGSDDRTIRLWDVAAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDG 732
Query: 117 TIDI 120
TI I
Sbjct: 733 TIRI 736
>sp|Q5ZIU8|KTNB1_CHICK Katanin p80 WD40 repeat-containing subunit B1 OS=Gallus gallus
GN=KATNB1 PE=2 SV=2
Length = 657
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 42 LEEQNILK---AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
LE IL+ H ++F P G + A GS D + LWD CI ++ VR
Sbjct: 92 LEAAKILRTLLGHKANICSLDFHPYGSFVASGSLDTDIKLWDVRRKGCIFKYKSHTQAVR 151
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVA-WHPKQYLLAYACDDK 157
+ FS DG +AS ++D T+ + + +GK +++ + V +HP +YLLA D+
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTAGKVMFEFTGHSGPVNVVEFHPSEYLLASGSSDR 211
Query: 158 YDRKQDCGNLKVFGFLPE 175
R D V + E
Sbjct: 212 TIRFWDLEKFHVVSCIEE 229
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 12/92 (13%)
Query: 24 LTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE 83
L D++ ++ F+F H + PV + EF P+ A GS D + WD +
Sbjct: 173 LWDLTAGKVMFEFTGH----------SGPVNVV--EFHPSEYLLASGSSDRTIRFWDLEK 220
Query: 84 LTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
+ + PVR I F+ DG + G +D
Sbjct: 221 FHVVSCIEEEATPVRCILFNPDGCCLYGGFQD 252
Score = 38.9 bits (89), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH 122
TG+ A G D V++W + C+ + P+ ++ S LI +GS+ +I +
Sbjct: 32 TGRLLATGGDDCRVNVWSVNKPNCVMSLTGHTTPIESLQISAKEELIVAGSQSGSIRVWD 91
Query: 123 VESGKKVYDICIQAATF-TVAWHPKQYLLAYACDD 156
+E+ K + + A ++ +HP +A D
Sbjct: 92 LEAAKILRTLLGHKANICSLDFHPYGSFVASGSLD 126
>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1
Length = 1258
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H C+ F P G A + D + LWD ++ C+RT + VR+++FS DG
Sbjct: 764 LTGHTDWVRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLRTLKSHTGWVRSVAFSADGQ 823
Query: 108 LIASGSEDLTIDIAHVESGK--KVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC 164
+ASGS D TI I + +G+ K Y I + +++A+ P +L D+ + DC
Sbjct: 824 TLASGSGDRTIKIWNYHTGECLKTY-IGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDC 881
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF-QRLDWPVRAISFSHDG 106
L+ H I F P + A S D+ V LW+ + C + + DW V A+ F G
Sbjct: 974 LEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDW-VYAVVFHPQG 1032
Query: 107 ALIASGSEDLTIDIAHVESGKKVYDICIQAAT------FTVAWHPKQYLLAYACDDKYDR 160
+IA+GS D T+ + ++ +G+ C++ + +AW P LLA A D+ R
Sbjct: 1033 KIIATGSADCTVKLWNISTGQ-----CLKTLSEHSDKILGMAWSPDGQLLASASADQSVR 1087
Query: 161 KQDCGNLKVFGFL 173
DC + G L
Sbjct: 1088 LWDCCTGRCVGIL 1100
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 46 NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSH 104
IL+ H F P G+ A S D V +WD + C++T +W V I+FS
Sbjct: 1098 GILRGHSNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNW-VFDIAFSP 1156
Query: 105 DGALIASGSEDLTIDIAHVESGKKVYDICIQAATF--TVAWHPKQYLLAYACDDKYDR 160
DG ++AS S D T+ I V +G K + ICI +VA+ P ++A D+ R
Sbjct: 1157 DGKILASASHDQTVRIWDVNTG-KCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVR 1213
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSHDG 106
L H + F P G+ A S D + LWD + TC++T DW VR ++FS DG
Sbjct: 722 LTGHEHEVFSVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDW-VRCVAFSPDG 780
Query: 107 ALIASGSEDLTIDIAHVESGK 127
+AS + D TI + V GK
Sbjct: 781 NTLASSAADHTIKLWDVSQGK 801
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
IL H + F P GK A GS D V LW+ + C++T + +++S DG
Sbjct: 1015 ILLEHTDWVYAVVFHPQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSPDG 1074
Query: 107 ALIASGSEDLTIDIAHVESGKKV 129
L+AS S D ++ + +G+ V
Sbjct: 1075 QLLASASADQSVRLWDCCTGRCV 1097
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H I F P GK A S D V +WD C V +++FS DG
Sbjct: 1142 LTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGE 1201
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQ 135
++ASGS+D T+ I +V++G+ C+Q
Sbjct: 1202 VVASGSQDQTVRIWNVKTGE-----CLQ 1224
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
K +H E H + I + P K GS D + LWD CI+T
Sbjct: 834 IKIWNYHTGECLKTYIGHTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGH 893
Query: 94 DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQA------ATFTVAWHPKQ 147
V +++FS DG +A S D ++ + + +G+ C++A VA+ P +
Sbjct: 894 TNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQ-----CLKAWYGNTDWALPVAFSPDR 948
Query: 148 YLLAYACDDK 157
+LA +DK
Sbjct: 949 QILASGSNDK 958
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 7/132 (5%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRT-FQRLDWPVRAISFSHDG 106
L H + F P G+ A S D V LW+ C++ + DW + ++FS D
Sbjct: 890 LHGHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWAL-PVAFSPDR 948
Query: 107 ALIASGSEDLTIDIAHVESGKKVYDICIQAAT---FTVAWHPKQYLLAYACDDKYDRKQD 163
++ASGS D T+ + ++GK + ++ T + +A+ P LA A D R +
Sbjct: 949 QILASGSNDKTVKLWDWQTGKYISS--LEGHTDFIYGIAFSPDSQTLASASTDSSVRLWN 1006
Query: 164 CGNLKVFGFLPE 175
+ F L E
Sbjct: 1007 ISTGQCFQILLE 1018
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H + + + P G+ A S D V LWD C+ + V + FS +G
Sbjct: 1058 LSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGE 1117
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAAT------FTVAWHPKQYLLAYACDDKYDRK 161
+IA+ S D T+ I + GK C++ T F +A+ P +LA A D+ R
Sbjct: 1118 IIATCSTDQTVKIWDWQQGK-----CLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRI 1172
Query: 162 QD 163
D
Sbjct: 1173 WD 1174
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
I + H + F P G+ A D V LW + CI+T + V +++F DG
Sbjct: 679 ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHEHEVFSVAFHPDG 738
Query: 107 ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAW 143
+AS S D TI + ++ G C+Q T W
Sbjct: 739 ETLASASGDKTIKLWDIQDGT-----CLQTLTGHTDW 770
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 23/126 (18%)
Query: 46 NILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD--AAELTCIRTFQRLDWPVRAISFS 103
NIL A F P G+ A D V +W+ + +L I +W VR + FS
Sbjct: 644 NILSA--------AFSPEGQLLATCDTDCHVRVWEVKSGKLLLICRGHS-NW-VRFVVFS 693
Query: 104 HDGALIASGSEDLTIDIAHVESGKKVYDICIQAAT------FTVAWHPKQYLLAYACDDK 157
DG ++AS D + + V G +CI+ T F+VA+HP LA A DK
Sbjct: 694 PDGEILASCGADENVKLWSVRDG-----VCIKTLTGHEHEVFSVAFHPDGETLASASGDK 748
Query: 158 YDRKQD 163
+ D
Sbjct: 749 TIKLWD 754
>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus
GN=Katnb1 PE=1 SV=1
Length = 658
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 42 LEEQNILK---AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
LE IL+ H ++F P G++ A GS+D + LWD C+ ++ VR
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVA-WHPKQYLLAYACDDK 157
+ FS DG +AS ++D T+ + + +GK + + V +HP +YLLA D+
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDR 211
Query: 158 YDRKQDCGNLKVFGFL---PEPIKK 179
R D +V + P P++
Sbjct: 212 TIRFWDLEKFQVVSCIEGEPGPVRS 236
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
+EF P A GS D + WD + + + PVR++ F+ DG + SG +D
Sbjct: 195 VEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD 252
Score = 38.9 bits (89), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH 122
+G+ A G D V+LW + CI + PV ++ + LI +GS+ +I +
Sbjct: 32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWD 91
Query: 123 VESGKKVYDICIQAATF-TVAWHPKQYLLAYACDD 156
+E+ K + + A ++ +HP +A D
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126
>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens
GN=KATNB1 PE=1 SV=1
Length = 655
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 42 LEEQNILK---AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
LE IL+ H ++F P G++ A GS+D + LWD C+ ++ VR
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVR 151
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVA-WHPKQYLLAYACDDK 157
+ FS DG +AS ++D T+ + + +GK + + V +HP +YLLA D+
Sbjct: 152 CLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDR 211
Query: 158 YDRKQDCGNLKVFGFL---PEPIKK 179
R D +V + P P++
Sbjct: 212 TIRFWDLEKFQVVSCIEGEPGPVRS 236
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
+EF P A GS D + WD + + + PVR++ F+ DG + SG +D
Sbjct: 195 VEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQD 252
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH 122
+G+ A G D V+LW + CI + PV ++ + LI +GS+ +I +
Sbjct: 32 SGRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWD 91
Query: 123 VESGKKVYDICIQAATF-TVAWHPKQYLLAYACDD 156
+E+ K + + A ++ +HP +A D
Sbjct: 92 LEAAKILRTLMGHKANICSLDFHPYGEFVASGSQD 126
>sp|O61585|KTNB1_STRPU Katanin p80 WD40 repeat-containing subunit B1 OS=Strongylocentrotus
purpuratus GN=KATNB1 PE=1 SV=1
Length = 690
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H + C++F P G++ A GS D V LWD CI T++ V I FS DG
Sbjct: 97 LTGHRNSIRCMDFHPFGEFVASGSTDTNVKLWDVRRKGCIYTYKGHSDQVNMIKFSPDGK 156
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFT-VAWHPKQYLLAYACDDK 157
+ + SED TI + + GK + T + +HP ++LLA D+
Sbjct: 157 WLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFLLASGSSDR 207
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 49 KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGAL 108
K H I+F P GK+ S+D + LWD + F+ V I F + L
Sbjct: 140 KGHSDQVNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHPNEFL 199
Query: 109 IASGSEDLTIDIAHVESGKKVYDICIQA-ATFTVAWHPKQYLLAYACDDKYDRKQDCGNL 167
+ASGS D T+ +E+ + V A A ++++HP L + D L
Sbjct: 200 LASGSSDRTVQFWDLETFQLVSSTSPGASAVRSISFHPDGSYLFCSSQDM---------L 250
Query: 168 KVFGFLPEPIK 178
FG+ EPI+
Sbjct: 251 HAFGW--EPIR 259
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 41 KLEEQNILKAHPVTCICIEFDP-TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRA 99
KL+E L AH C+ P +G+ G +D V+LW + CI + PV +
Sbjct: 8 KLQE---LVAHSSNVNCLALGPMSGRVMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVDS 64
Query: 100 ISFSHDGALIASGSEDLTIDIAHVESGKKV 129
+ F+ L+ +GS+ T+ I +E K V
Sbjct: 65 VKFNSSEELVVAGSQSGTMKIYDLEPAKIV 94
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H ++F+ + + GS+ + ++D +RT +R + F G
Sbjct: 55 LSGHTSPVDSVKFNSSEELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGE 114
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQY-LLAYACDDKY 158
+ASGS D + K++D+ + +T H Q ++ ++ D K+
Sbjct: 115 FVASGSTDTNV---------KLWDVRRKGCIYTYKGHSDQVNMIKFSPDGKW 157
>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina
GN=HET-E1 PE=4 SV=1
Length = 1356
Score = 63.9 bits (154), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + F P G+ A GS D + +WDAA TC +T + V +++FS DG
Sbjct: 921 LEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQ 980
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQ------AATFTVAWHPKQYLLAYACDDK 157
+ASGS D TI I SG C Q + ++VA+ P +A DDK
Sbjct: 981 RVASGSGDKTIKIWDTASGT-----CTQTLEGHGGSVWSVAFSPDGQRVASGSDDK 1031
Score = 61.6 bits (148), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 44/79 (55%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + + + F P G+ A GS D + +WD A TC +T + V +++FS DG
Sbjct: 963 LEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQTLEGHGGSVWSVAFSPDGQ 1022
Query: 108 LIASGSEDLTIDIAHVESG 126
+ASGS+D TI I SG
Sbjct: 1023 RVASGSDDKTIKIWDTASG 1041
Score = 61.2 bits (147), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + + F P + A GS D + +WDAA TC +T + V++++FS DG
Sbjct: 879 LEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQ 938
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQ------AATFTVAWHPKQYLLAYACDDK 157
+ASGS+D TI I SG C Q ++ +VA+ P +A DK
Sbjct: 939 RVASGSDDHTIKIWDAASGT-----CTQTLEGHGSSVLSVAFSPDGQRVASGSGDK 989
Score = 58.9 bits (141), Expect = 8e-08, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 40/69 (57%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ F P G+ A GS D + +WDAA TC +T + V++++FS DG +ASGS D T
Sbjct: 1141 VAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKT 1200
Query: 118 IDIAHVESG 126
I I SG
Sbjct: 1201 IKIWDTASG 1209
Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + + F P G+ A GS D + +WDAA TC +T + V +++FS DG
Sbjct: 1089 LEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQ 1148
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAA------TFTVAWHPKQYLLAYACDDK 157
+ASGS D TI I SG C Q +VA+ P +A DK
Sbjct: 1149 RVASGSIDGTIKIWDAASGT-----CTQTLEGHGGWVQSVAFSPDGQRVASGSSDK 1199
Score = 58.2 bits (139), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 11/104 (10%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + + F P G+ A GS D + +WD A TC +T + V+++ FS DG
Sbjct: 1005 LEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQA------ATFTVAWHP 145
+ASGS+D TI I SG C Q + ++VA+ P
Sbjct: 1065 RVASGSDDHTIKIWDAVSGT-----CTQTLEGHGDSVWSVAFSP 1103
Score = 57.4 bits (137), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + F P G+ A GS D + +WD A TC +T + V++++FS DG
Sbjct: 1173 LEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQSVAFSPDGQ 1232
Query: 108 LIASGSEDLTIDIAHVESG 126
+ASGS D TI I SG
Sbjct: 1233 RVASGSSDNTIKIWDTASG 1251
Score = 53.5 bits (127), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 41/79 (51%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + F P G+ A GS D + +WDA TC +T + V +++FS DG
Sbjct: 1047 LEGHGGWVQSVVFSPDGQRVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQ 1106
Query: 108 LIASGSEDLTIDIAHVESG 126
+ASGS D TI I SG
Sbjct: 1107 RVASGSIDGTIKIWDAASG 1125
Score = 51.2 bits (121), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + + + F G+ A GS D + +WD A T +T + V +++FS D
Sbjct: 837 LEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRE 896
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQ------AATFTVAWHPKQYLLAYACDD 156
+ASGS+D TI I SG C Q +VA+ P +A DD
Sbjct: 897 RVASGSDDKTIKIWDAASGT-----CTQTLEGHGGRVQSVAFSPDGQRVASGSDD 946
Score = 40.4 bits (93), Expect = 0.028, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 76 VSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQ 135
+S+ +A C +T + V +++FS DG +ASGS+D TI I SG +
Sbjct: 823 ISVVEAEWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTASGTGTQTLEGH 882
Query: 136 AAT-FTVAWHPKQYLLAYACDDK 157
+ ++VA+ P + +A DDK
Sbjct: 883 GGSVWSVAFSPDRERVASGSDDK 905
Score = 38.1 bits (87), Expect = 0.13, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + F P G+ A GS D + +WD A TC +T + +SF + A
Sbjct: 1215 LEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWDTASGTCTQTLN-VGSTATCLSFDYTNA 1273
Query: 108 LIASGSEDLTIDIAHVES 125
I + + I A +ES
Sbjct: 1274 YINTNIGRIQIATATMES 1291
>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2
SV=1
Length = 589
Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 26 DISPKQLDFKFKEHHKLEEQ---------NILKAHPVTCICIEFDPTGKYFAVGSKDALV 76
DISP L F H + I H C++F P Y A GS D V
Sbjct: 391 DISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTV 450
Query: 77 SLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQA 136
LW A + +R F PV ++SFS +G +AS ED + + + SG ++
Sbjct: 451 RLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHT 510
Query: 137 ATFT-VAWHPKQYLLAYACDDK----YDRKQDCGNLKVFG 171
+ T +A+ P L+A A D +D + C N G
Sbjct: 511 DSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADG 550
Score = 35.4 bits (80), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 43/121 (35%), Gaps = 7/121 (5%)
Query: 44 EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFS 103
E IL+ H F S+D + WD T +Q +PV + S
Sbjct: 334 EMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDIS 393
Query: 104 HDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT----VAWHPKQYLLAYACDDKYD 159
ASGS D T A + S + Y + I A V +HP LA DK
Sbjct: 394 PFSLYFASGSHDRT---ARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTV 450
Query: 160 R 160
R
Sbjct: 451 R 451
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 61/159 (38%), Gaps = 6/159 (3%)
Query: 18 LYQSSVLTDIS-----PKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSK 72
+Y + L D S + + ++ + + + H ++ P YFA GS
Sbjct: 345 VYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISPFSLYFASGSH 404
Query: 73 DALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI 132
D LW +R + V + F + +A+GS D T+ + + G V
Sbjct: 405 DRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLF 464
Query: 133 CI-QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVF 170
+ ++++ P LA A +D+ + D + +F
Sbjct: 465 TGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLF 503
>sp|Q6NVM2|KTNB1_XENTR Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus tropicalis
GN=katnb1 PE=2 SV=1
Length = 655
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 42 LEEQNILK---AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
LE IL+ H ++F P G + A GS D + LWD C+ ++ VR
Sbjct: 92 LEAAKILRTLMGHKANVCSLDFHPYGDFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVR 151
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVA-WHPKQYLLAYACDDK 157
+ FS DG +AS S+D ++ + + +GK + ++ + +HP +YLLA D+
Sbjct: 152 CLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADR 211
Query: 158 YDRKQDCGNLKVFG 171
R D ++ G
Sbjct: 212 TVRFWDLEKFQLIG 225
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 26/58 (44%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
IEF P A GS D V WD + I + PVRAI FS DG I G D
Sbjct: 195 IEFHPNEYLLASGSADRTVRFWDLEKFQLIGCTEGETIPVRAILFSSDGGCIFCGGRD 252
Score = 39.3 bits (90), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH 122
+G+ A G D V+LW + CI + PV ++ F++ LI +GS+ ++ +
Sbjct: 32 SGRLVATGGDDCRVNLWSVNKPNCIMSLTGHTTPVESVRFNNAEELIVAGSQSGSLRVWD 91
Query: 123 VESGK 127
+E+ K
Sbjct: 92 LEAAK 96
>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis
GN=katnb1 PE=1 SV=1
Length = 655
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 4/134 (2%)
Query: 42 LEEQNILK---AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
LE IL+ H ++F P G++ A GS D + LWD C+ ++ VR
Sbjct: 92 LEAAKILRTLMGHKANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKGHTQAVR 151
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVA-WHPKQYLLAYACDDK 157
+ FS DG +AS S+D ++ + + +GK + ++ + +HP +YLLA D+
Sbjct: 152 CLRFSPDGKWLASASDDHSVKLWDLTAGKMMAELSEHKGPVNIIEFHPNEYLLASGSADR 211
Query: 158 YDRKQDCGNLKVFG 171
R D ++ G
Sbjct: 212 TVRFWDLEKFQLVG 225
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
IEF P A GS D V WD + + + PVRAI FS+DG I G +D
Sbjct: 195 IEFHPNEYLLASGSADRTVRFWDLEKFQLVGCTEGETIPVRAILFSNDGGCIFCGGKD 252
Score = 39.7 bits (91), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAH 122
+G+ A G D V LW + CI + PV ++ F++ LI +GS+ ++ I
Sbjct: 32 SGRLVATGGDDCRVHLWSVNKPNCIMSLTGHTTPVESVRFNNSEELIVAGSQSGSLRIWD 91
Query: 123 VESGK 127
+E+ K
Sbjct: 92 LEAAK 96
>sp|A0CH87|LIS12_PARTE Lissencephaly-1 homolog 2 OS=Paramecium tetraurelia
GN=GSPATT00007594001 PE=3 SV=1
Length = 403
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C+ FDPTGKY S D + LW+ TC++T + V + FS G
Sbjct: 143 LKGHTSNVNCLAFDPTGKYICSASSDLSIKLWELKNHTCVKTLIGHEHSVSTVQFSDHGD 202
Query: 108 LIASGSEDLTIDIAHVESG 126
I S S D +I + V++G
Sbjct: 203 FILSASRDKSIKLWEVQTG 221
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 6/126 (4%)
Query: 7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKY 66
+ L +P Y S +D+S K + K +H + I H V+ + +F G +
Sbjct: 150 VNCLAFDPTGK-YICSASSDLSIKLWELK---NHTCVKTLIGHEHSVSTV--QFSDHGDF 203
Query: 67 FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG 126
S+D + LW+ C +TF VR FS+D +AS S+D I I ++SG
Sbjct: 204 ILSASRDKSIKLWEVQTGFCKKTFSEHQEWVRCAVFSNDEKQMASCSQDQMIYIWVIDSG 263
Query: 127 KKVYDI 132
+ ++ +
Sbjct: 264 QILHQL 269
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (40%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H C+ F P + S D + LWD +T + V ++F G
Sbjct: 101 LEGHRAGVNCVAFHPQYQILGSASDDGSIKLWDYESGHFEKTLKGHTSNVNCLAFDPTGK 160
Query: 108 LIASGSEDLTI 118
I S S DL+I
Sbjct: 161 YICSASSDLSI 171
>sp|A8XZJ9|LIS1_CAEBR Lissencephaly-1 homolog OS=Caenorhabditis briggsae GN=lis-1 PE=3
SV=2
Length = 390
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 22 SVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA 81
S TD++ K DF + + L+ LK H T + F PTG + S+D + WD
Sbjct: 165 SCSTDLTIKLWDFG-QSYDCLKS---LKGHEHTVSSVTFLPTGDFVLSASRDHTIKQWDI 220
Query: 82 AELTCIRTFQ-RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT 140
+ C+ TF+ DW VR I SHDG L ASGS D T+ + + ++ + I + ++
Sbjct: 221 STGYCVFTFRGHNDW-VRMIRISHDGTLFASGSLDQTVSVWSLPRKQRNWYFEIMSMRWS 279
Query: 141 VA 142
V+
Sbjct: 280 VS 281
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE-LTCIRTFQRLDWPVRAISFSHDG 106
LK H I D GK S D + LWD + C+++ + + V +++F G
Sbjct: 144 LKGHTDAVNDIAIDAAGKQLVSCSTDLTIKLWDFGQSYDCLKSLKGHEHTVSSVTFLPTG 203
Query: 107 ALIASGSEDLTIDIAHVESGKKVY 130
+ S S D TI + +G V+
Sbjct: 204 DFVLSASRDHTIKQWDISTGYCVF 227
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 34/73 (46%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L AH + F P GKY + D ++ +W+ + C++ + + V ++F
Sbjct: 314 LSAHENWVRGLAFHPKGKYLVSVADDKMMRIWELSAQRCMKAIEAHEHFVSTVAFHQTNP 373
Query: 108 LIASGSEDLTIDI 120
+ +GS D++ +
Sbjct: 374 YVITGSVDMSCKV 386
>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens
GN=TAF5 PE=1 SV=3
Length = 800
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
I H C F P Y A GS D V LWD C+R F P+ +++FS +G
Sbjct: 622 IFAGHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNG 681
Query: 107 ALIASGSED---LTIDIAH 122
+A+G+ D L DI H
Sbjct: 682 RFLATGATDGRVLLWDIGH 700
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
I H + F P G++ A G+ D V LWD + + V ++ FS DG
Sbjct: 664 IFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDG 723
Query: 107 ALIASGSEDLTI 118
++ASGS D T+
Sbjct: 724 EILASGSMDNTV 735
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 44 EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFS 103
E IL H F P Y S+D V LW TC+ ++ ++PV FS
Sbjct: 535 ELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFS 594
Query: 104 HDGALIASGSED 115
G SG D
Sbjct: 595 PYGYYFVSGGHD 606
>sp|Q17963|TG125_CAEEL WD repeat-containing protein tag-125 OS=Caenorhabditis elegans
GN=tag-125 PE=4 SV=1
Length = 376
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C F+P GS D V +WD CI+T PV A+SF+ DG+
Sbjct: 167 LKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLPAHSDPVSAVSFNRDGS 226
Query: 108 LIASGSEDLTIDIAHVESGKKV 129
LIASGS D + I +G+ +
Sbjct: 227 LIASGSYDGLVRIWDTANGQCI 248
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 7/127 (5%)
Query: 4 QNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPT 63
N++ NP+ SL S D S + D K K L AH + F+
Sbjct: 171 NNYVFCCNFNPQSSLVVSGSF-DESVRIWDVKTGMCIK-----TLPAHSDPVSAVSFNRD 224
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTF-QRLDWPVRAISFSHDGALIASGSEDLTIDIAH 122
G A GS D LV +WD A CI+T + PV + FS +G I + + D T+ +
Sbjct: 225 GSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKFSPNGKYILASNLDSTLKLWD 284
Query: 123 VESGKKV 129
GK +
Sbjct: 285 FSKGKTL 291
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + +F P GKY S D V +W+ + C RT V I++S D
Sbjct: 83 LEGHTKSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLTGHKLGVNDIAWSSDSR 142
Query: 108 LIASGSEDLTIDI 120
+ S S+D T+ I
Sbjct: 143 CVVSASDDKTLKI 155
>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-associated factor-associated
factor 65 kDa subunit 5L OS=Homo sapiens GN=TAF5L PE=1
SV=1
Length = 589
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 61/151 (40%), Gaps = 10/151 (6%)
Query: 26 DISPKQLDFKFKEHHKLEEQ---------NILKAHPVTCICIEFDPTGKYFAVGSKDALV 76
DISP L F H + I H C++F P Y A GS D V
Sbjct: 391 DISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTV 450
Query: 77 SLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQA 136
LW A + +R F PV +++FS +G +AS ED + + + SG ++
Sbjct: 451 RLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHT 510
Query: 137 ATFT-VAWHPKQYLLAYACDDKYDRKQDCGN 166
T + + P L+A A D R D N
Sbjct: 511 DNITSLTFSPDSGLIASASMDNSVRVWDIRN 541
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 9/140 (6%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
+ + H ++ P YFA GS D LW +R + V + F +
Sbjct: 379 LYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNS 438
Query: 107 ALIASGSEDLTIDIAHVESGKKVYDICI-QAATFTVAWHPKQYLLAYACDDKYDRKQDCG 165
+A+GS D T+ + + G V + ++A+ P LA A +D+
Sbjct: 439 NYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQ-------- 490
Query: 166 NLKVFGFLPEPIKKRKRGGT 185
LK++ + K RG T
Sbjct: 491 RLKLWDLASGTLYKELRGHT 510
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 47/123 (38%), Gaps = 11/123 (8%)
Query: 44 EQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAIS 101
E IL+ H PV D +G S+D + WD T +Q +PV +
Sbjct: 334 EMKILRGHCGPVYSTRFLADSSG--LLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLD 391
Query: 102 FSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT----VAWHPKQYLLAYACDDK 157
S ASGS D T A + S + Y + I A V +HP LA DK
Sbjct: 392 ISPYSLYFASGSHDRT---ARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDK 448
Query: 158 YDR 160
R
Sbjct: 449 TVR 451
>sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tup11 PE=1 SV=1
Length = 614
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
I F P GKY G++D + LWD + F + + ++ FSH+G I SGS D T
Sbjct: 366 IAFSPDGKYLVTGTEDRQIKLWDLSTQKVRYVFSGHEQDIYSLDFSHNGRFIVSGSGDRT 425
Query: 118 IDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDR 160
+ VE+G+ + + I+ +A P +A D+ R
Sbjct: 426 ARLWDVETGQCILKLEIENGVTAIAISPNDQFIAVGSLDQIIR 468
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 15/135 (11%)
Query: 24 LTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE 83
L D+S +++ + F H EQ+I ++F G++ GS D LWD
Sbjct: 386 LWDLSTQKVRYVFSGH----EQDIYS--------LDFSHNGRFIVSGSGDRTARLWDVET 433
Query: 84 LTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVA 142
CI + ++ V AI+ S + IA GS D I + V SG V + + + +++A
Sbjct: 434 GQCILKLE-IENGVTAIAISPNDQFIAVGSLDQIIRVWSV-SGTLVERLEGHKESVYSIA 491
Query: 143 WHPKQYLLAYACDDK 157
+ P +L DK
Sbjct: 492 FSPDSSILLSGSLDK 506
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG 112
VT I I P ++ AVGS D ++ +W + T + + V +I+FS D +++ SG
Sbjct: 446 VTAIAIS--PNDQFIAVGSLDQIIRVWSVSG-TLVERLEGHKESVYSIAFSPDSSILLSG 502
Query: 113 SEDLTIDIAHVESGKKV 129
S D TI + +++ + V
Sbjct: 503 SLDKTIKVWELQATRSV 519
Score = 34.3 bits (77), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 56 ICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
+ + P ++ GSKD + WD T Q V ++ FS DG ASGS D
Sbjct: 542 LSVAVSPDSRWGLSGSKDRSMQFWDLQTGQSYLTCQGHKNSVISVCFSPDGRQFASGSGD 601
Query: 116 LTIDIAHVE 124
L I ++
Sbjct: 602 LRARIWSID 610
>sp|A0DB19|LIS11_PARTE Lissencephaly-1 homolog 1 OS=Paramecium tetraurelia
GN=GSPATT00015130001 PE=3 SV=1
Length = 403
Score = 58.5 bits (140), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H C+ FDPTGKY S D + +W+ TC++T + V + FS G
Sbjct: 143 LKGHTSNVNCLAFDPTGKYICSASSDLSIKIWELKNHTCVKTLIGHEHSVSTVQFSDHGD 202
Query: 108 LIASGSEDLTIDIAHVESG 126
I S S D I + V +G
Sbjct: 203 FILSASRDKNIKLWEVATG 221
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKY 66
+ L +P Y S +D+S K + K +H + I H V+ + +F G +
Sbjct: 150 VNCLAFDPTGK-YICSASSDLSIKIWELK---NHTCVKTLIGHEHSVSTV--QFSDHGDF 203
Query: 67 FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESG 126
S+D + LW+ A C +TF VR FS+D IAS S+D I I ++SG
Sbjct: 204 ILSASRDKNIKLWEVATGFCKKTFSEHQEWVRCAVFSNDEKQIASCSQDQMIYIWVIDSG 263
Query: 127 KKVYDI 132
+ ++ +
Sbjct: 264 QVLHQL 269
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H C+ F P + S D + LWD +T + V ++F G
Sbjct: 101 LEGHRAGVNCVAFHPQYQILGSASDDGSIKLWDYESGHFEKTLKGHTSNVNCLAFDPTGK 160
Query: 108 LIASGSEDLTIDI 120
I S S DL+I I
Sbjct: 161 YICSASSDLSIKI 173
>sp|A8X8C6|TG125_CAEBR WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae
GN=tag-125 PE=4 SV=1
Length = 368
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 44/96 (45%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
K E ++ LK H C F+P GS D V +WD C++T
Sbjct: 145 LKIYEVPTVKMAKTLKGHTNYVFCCNFNPQSSLVVSGSFDESVRIWDVRTGMCVKTLPAH 204
Query: 94 DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKV 129
PV A+SF+ DG+LI SGS D + I +G+ V
Sbjct: 205 SDPVSAVSFNRDGSLITSGSYDGLVRIWDTANGQCV 240
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
++ H + ++F P GK+ S D V +W+ ++L+C RT V ++S D
Sbjct: 75 IEGHTKSISAVKFSPCGKFLGTSSADKTVKIWNMSDLSCERTLTGHKLGVNDFAWSADSK 134
Query: 108 LIASGSEDLTIDIAHVESGK 127
I + S+D T+ I V + K
Sbjct: 135 SIVTASDDKTLKIYEVPTVK 154
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
Query: 5 NFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTG 64
N++ NP+ SL S D S + D + K L AH + F+ G
Sbjct: 164 NYVFCCNFNPQSSLVVSGSF-DESVRIWDVRTGMCVK-----TLPAHSDPVSAVSFNRDG 217
Query: 65 KYFAVGSKDALVSLWDAAELTCIRTF-QRLDWPVRAISFSHDGALIASGSEDLTIDIAHV 123
GS D LV +WD A C++T + PV + FS +G I S + D T+ +
Sbjct: 218 SLITSGSYDGLVRIWDTANGQCVKTLVDDENPPVAFVKFSPNGKYILSSNLDNTLKLWDF 277
Query: 124 ESGKKV 129
GK +
Sbjct: 278 GKGKTL 283
>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus
GN=Taf5 PE=2 SV=1
Length = 801
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
I H C + P Y A GS D V LWD C+R F P+ +++FS +G
Sbjct: 623 IFAGHLADVNCTRYHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNG 682
Query: 107 ALIASGSED---LTIDIAH 122
+A+G+ D L DI H
Sbjct: 683 RFLATGATDGRVLLWDIGH 701
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
I H + F P G++ A G+ D V LWD + + V ++ FS DG
Sbjct: 665 IFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDG 724
Query: 107 ALIASGSEDLTI 118
++ASGS D T+
Sbjct: 725 EILASGSMDNTV 736
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 28/72 (38%)
Query: 44 EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFS 103
E IL H F P Y S+D V LW TC+ ++ ++PV FS
Sbjct: 536 ELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFS 595
Query: 104 HDGALIASGSED 115
G SG D
Sbjct: 596 PYGYYFVSGGHD 607
>sp|Q9U178|UTP11_LEIMA Probable U3 small nucleolar RNA-associated protein 11 OS=Leishmania
major GN=L374.02 PE=3 SV=1
Length = 361
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 195 VNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHM 254
+ +KTH ER QP+ R+ LG LEK KD+ +RA K + LQ +K+ A ++N DEF+ M
Sbjct: 18 LKRKTHLERSQPKSRQHLGQLEKHKDHVLRAKKRKVKVRRLQEIKRAAAQRNPDEFNIGM 77
Query: 255 INARL-VDGEHFENPKPEAEDSEEQKLLMDT-----QDAKYVSSRRVMEKRKIEKI---K 305
A + V + +S+ +K + T ++ +Y+ + ++++ ++ +
Sbjct: 78 TKAVMDVANGRMRQRRVRLVESDRKKDMQTTIEHNRRNVQYLEFKAQADQQRATELLNEE 137
Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELL 347
A + A Q N H+ FV++E E + F+ +K PE++
Sbjct: 138 AAAALTSTAPQ--NKHIVFVNSEEEFRSFNPLKHFDVTPEMM 177
>sp|P46800|GBLP_DICDI Guanine nucleotide-binding protein subunit beta-like protein
OS=Dictyostelium discoideum GN=gpbB PE=1 SV=2
Length = 329
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 50/109 (45%)
Query: 49 KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGAL 108
+AH CI F P GS D V +WD C T V ++ S DG+L
Sbjct: 153 EAHQDWVSCIRFSPNTPTIVSGSWDNKVKIWDIKSFKCNHTLTDHTGYVNTVTISPDGSL 212
Query: 109 IASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK 157
ASG +D + + SGK +Y + + +A+ P +Y L+ A DDK
Sbjct: 213 CASGGKDTFACLWELSSGKPLYKLEARNTINALAFSPNKYWLSAATDDK 261
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 14/128 (10%)
Query: 1 MEGQN-FIPLLGLNP-RPSLYQSS------VLTDISPKQLDFKFKEHHKLEEQNILKAHP 52
+ G N F+ + ++P P SS ++ ++P K H L+ +H
Sbjct: 17 LVGHNGFVTSIAVSPENPDTIISSSRDKTVMVWQLTPTDATSPGKAHRSLKGH----SHF 72
Query: 53 VTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASG 112
V + I D G++ GS D + LWD + R F+ V +++FS D I SG
Sbjct: 73 VQDVVISHD--GQFALSGSWDNTLRLWDITKGVSTRLFKGHTQDVMSVAFSSDNRQIISG 130
Query: 113 SEDLTIDI 120
S D TI +
Sbjct: 131 SRDATIKV 138
>sp|Q9QXE7|TBL1X_MOUSE F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus
GN=Tbl1x PE=2 SV=2
Length = 527
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 48 LKAHPVTCICIEFDPTGK---------YFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
L+AH I++ PTG A S D+ V LWD CI T + PV
Sbjct: 400 LQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVY 459
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPK 146
+++FS DG +ASGS D + I + +SG V+ F V W+ +
Sbjct: 460 SVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSYRGTGGIFEVCWNAR 507
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 67 FAVGSKDALVSLWDAAELTC---IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV 123
FA S D + + L C ++TFQ V AI + G L+AS S+D+T+ I +
Sbjct: 335 FASCSTDMCIHV---CRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSM 391
Query: 124 ESGKKVYDICIQAAT---FTVAWHP 145
+ V+D +QA + +T+ W P
Sbjct: 392 KQDACVHD--LQAHSKEIYTIKWSP 414
>sp|P20053|PRP4_YEAST U4/U6 small nuclear ribonucleoprotein PRP4 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PRP4 PE=1
SV=1
Length = 465
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+++ P+GK+ S D LWDA+ + + D V ++SF DG+L+ SG D
Sbjct: 271 VKYHPSGKFIGSASHDMTWRLWDASTHQELLLQEGHDKGVFSLSFQCDGSLVCSGGMDSL 330
Query: 118 IDIAHVESGKKVYDICIQA-ATFTVAWHPKQYLLAYACDDK----YD-RKQDCGNLK 168
+ + SG KV + + +TVAW P Y +A D +D RK+D G L
Sbjct: 331 SMLWDIRSGSKVMTLAGHSKPIYTVAWSPNGYQVATGGGDGIINVWDIRKRDEGQLN 387
Score = 35.8 bits (81), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 49 KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGAL 108
+ H + F G G D+L LWD + + T P+ +++S +G
Sbjct: 304 EGHDKGVFSLSFQCDGSLVCSGGMDSLSMLWDIRSGSKVMTLAGHSKPIYTVAWSPNGYQ 363
Query: 109 IASGSEDLTIDI 120
+A+G D I++
Sbjct: 364 VATGGGDGIINV 375
>sp|P38129|TAF5_YEAST Transcription initiation factor TFIID subunit 5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF5 PE=1
SV=1
Length = 798
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
I H C+ F P G Y GS D +WD + +R F PV +I+ DG
Sbjct: 604 IFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDG 663
Query: 107 ALIASGSEDLTIDIAHVESGKKV 129
+++GSED I++ + +GK++
Sbjct: 664 RWLSTGSEDGIINVWDIGTGKRL 686
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L H T F P KY GS+D V LW T + +++ + PV +SFS G
Sbjct: 521 LVGHSGTVYSTSFSPDNKYLLSGSEDKTVRLWSMDTHTALVSYKGHNHPVWDVSFSPLGH 580
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFT----VAWHPKQYLLAYACDDKYDRKQD 163
A+ S D T A + S +Y + I A V++HP + DK R D
Sbjct: 581 YFATASHDQT---ARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVFTGSSDKTCRMWD 637
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
HPV + F P G YFA S D LW + +R F V +SF +G +
Sbjct: 568 HPV--WDVSFSPLGHYFATASHDQTARLWSCDHIYPLRIFAGHLNDVDCVSFHPNGCYVF 625
Query: 111 SGSEDLTIDIAHVESGKKV-YDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLK 168
+GS D T + V +G V + A ++A P L+ +D D G K
Sbjct: 626 TGSSDKTCRMWDVSTGDSVRLFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWDIGTGK 684
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 24/124 (19%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-------PVRA 99
+ H I I P G++ + GS+D ++++WD I T +RL + +
Sbjct: 646 LFLGHTAPVISIAVCPDGRWLSTGSEDGIINVWD------IGTGKRLKQMRGHGKNAIYS 699
Query: 100 ISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYD 159
+S+S +G ++ SG D T+ +V+D ++ AT + P + + Y D
Sbjct: 700 LSYSKEGNVLISGGADHTV---------RVWD--LKKATTEPSAEPDEPFIGYLGDVTAS 748
Query: 160 RKQD 163
QD
Sbjct: 749 INQD 752
>sp|Q9VU65|POC1_DROME POC1 centriolar protein homolog OS=Drosophila melanogaster GN=Poc1
PE=2 SV=1
Length = 391
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF-QRLDWPVRAISFSHDGAL 108
AH ++FD TG S D +W A + +F Q+ +W VR+ FS +G L
Sbjct: 100 AHSKAVRSVDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNW-VRSAKFSPNGKL 158
Query: 109 IASGSEDLTIDIAHVESGKKVYDICIQ-AATFTVAWHPKQYLLAYACDDKYDRKQDCGNL 167
+A+ S+D ++ I V+SG+ V + AA +AWHP +LA A C +
Sbjct: 159 VATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVAL--------GCNRI 210
Query: 168 KVF 170
K+F
Sbjct: 211 KIF 213
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT-CIRTFQRLDWPVRAISFSHDG 106
H + F P G A S D+ V LW+ + CIR F PV +++S G
Sbjct: 14 FTGHSGGITQLRFGPDGAQIATSSTDSTVILWNLNQAARCIR-FASHSAPVNGVAWSPKG 72
Query: 107 ALIASGSEDLTIDI 120
L+AS D T+ I
Sbjct: 73 NLVASAGHDRTVKI 86
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 42/117 (35%), Gaps = 42/117 (35%)
Query: 59 EFDPTGKYFAVGSKDALVSLWDAAELTCIRTF-------QRLDW---------------- 95
+F P GK A S D V ++D C+RTF ++L W
Sbjct: 151 KFSPNGKLVATASDDKSVRIYDVDSGECVRTFTEERAAPRQLAWHPWGNMLAVALGCNRI 210
Query: 96 -------------------PVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC 133
PV ++F G + SGS+D TI I + G+ +Y +
Sbjct: 211 KIFDVSGSQLLQLYVVHSAPVNDVAFHPSGHFLLSGSDDRTIRILDLLEGRPIYTLT 267
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
+L + ++ + PV + F P+G + GS D + + D E I T V A+
Sbjct: 219 QLLQLYVVHSAPVNDVA--FHPSGHFLLSGSDDRTIRILDLLEGRPIYTLTGHTDAVNAV 276
Query: 101 SFSHDGALIASGSED 115
+FS DG A+G D
Sbjct: 277 AFSRDGDKFATGGSD 291
>sp|Q95RJ9|EBI_DROME F-box-like/WD repeat-containing protein ebi OS=Drosophila
melanogaster GN=ebi PE=1 SV=2
Length = 700
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 48 LKAHPVTCICIEFDPTGK---------YFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
L+AH I++ PTG A S D+ V LWD +CI T + PV
Sbjct: 572 LQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIHTLTKHTEPVY 631
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDD 156
+++FS DG +ASGS D + I ++G+ V+ F V W+ K + + D
Sbjct: 632 SVAFSPDGKHLASGSFDKCVHIWSTQTGQLVHSYKGTGGIFEVCWNSKGTKVGASASD 689
>sp|Q9BQ87|TBL1Y_HUMAN F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens
GN=TBL1Y PE=2 SV=1
Length = 522
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 48 LKAHPVTCICIEFDPTGK---------YFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
L+AH I++ PTG A S D+ V LWD + C T + PV
Sbjct: 397 LQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHTLMKHQEPVY 456
Query: 99 AISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPK 146
+++FS DG +ASGS D + I + +SG V+ F V W+ +
Sbjct: 457 SVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSYQGTGGIFEVCWNAR 504
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG---------AL 108
I++DP+G A S D + +W + C+ Q + I +S G +
Sbjct: 365 IKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIM 424
Query: 109 IASGSEDLTIDIAHVESGKKVYDIC-IQAATFTVAWHPKQYLLAYACDDKY 158
+AS S D T+ + VE G + + Q ++VA+ P LA DKY
Sbjct: 425 LASASFDSTVRLWDVEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKY 475
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 67 FAVGSKDALVSLWDAAELTC---IRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHV 123
FA S D + + L C ++TFQ V AI + G L+AS S+D+T+ I +
Sbjct: 332 FASCSTDMCIHV---CRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSM 388
Query: 124 ESGKKVYDICIQAAT---FTVAWHP 145
+ V+D +QA + +T+ W P
Sbjct: 389 KQDACVHD--LQAHSKEIYTIKWSP 411
>sp|Q9UUG8|TUP12_SCHPO Transcriptional repressor tup12 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tup12 PE=1 SV=2
Length = 598
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 49/103 (47%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ F P GKY A G +D + +WD A+ R + + ++ FS DG + SGS D T
Sbjct: 352 VAFSPDGKYLATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRT 411
Query: 118 IDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDR 160
+ + VE+G++ + TV + P +A DK R
Sbjct: 412 VCLWDVEAGEQKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIR 454
Score = 42.4 bits (98), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
+L H ++F GK GS D V LWD E + D V + FS DG
Sbjct: 383 LLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDV-EAGEQKLILHTDDGVTTVMFSPDG 441
Query: 107 ALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHP-KQYLLAYACDD 156
IA+GS D I I SG V + + + ++VA+ P +YL++ + D+
Sbjct: 442 QFIAAGSLDKVIRI-WTSSGTLVEQLHGHEESVYSVAFSPDGKYLVSGSLDN 492
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
+ F P G++ A GS D ++ +W ++ T + + V +++FS DG + SGS D T
Sbjct: 435 VMFSPDGQFIAAGSLDKVIRIWTSSG-TLVEQLHGHEESVYSVAFSPDGKYLVSGSLDNT 493
Query: 118 IDI 120
I +
Sbjct: 494 IKL 496
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 23/127 (18%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCI---------------RTFQR 92
L H + + F P GKY GS D + LW EL C+ +TF
Sbjct: 466 LHGHEESVYSVAFSPDGKYLVSGSLDNTIKLW---ELQCVSNVAPSMYKEGGICKQTFTG 522
Query: 93 LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQA---ATFTVAWHPKQYL 149
+ +++ S DG I SGS+D TI +S + +Q + +VA P +
Sbjct: 523 HKDFILSVTVSPDGKWIISGSKDRTIQFWSPDSPHS--QLTLQGHNNSVISVAVSPNGHC 580
Query: 150 LAYACDD 156
A D
Sbjct: 581 FATGSGD 587
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 56 ICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
+ + P GK+ GSKD + W T Q + V +++ S +G A+GS D
Sbjct: 528 LSVTVSPDGKWIISGSKDRTIQFWSPDSPHSQLTLQGHNNSVISVAVSPNGHCFATGSGD 587
Query: 116 L 116
L
Sbjct: 588 L 588
>sp|P93107|PF20_CHLRE Flagellar WD repeat-containing protein Pf20 OS=Chlamydomonas
reinhardtii GN=PF20 PE=2 SV=1
Length = 606
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 73/195 (37%), Gaps = 33/195 (16%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLT 117
++F P G A G D+ V +WD + C+ TF + ++ F H G ++ASGS D T
Sbjct: 374 VDFHPAGTCLASGGGDSAVKIWDFEKQRCVTTFTDHKQAIWSVRFHHLGEVVASGSLDHT 433
Query: 118 IDIAHVESGKKVYDICIQA------ATFTVAWHPKQYLLAYACDDK-------------- 157
+ + + +GK C A + +AW P LA A DK
Sbjct: 434 VRLWDLPAGK-----CRMALRGHVDSVNDLAWQPFSSSLATASSDKTVSVWDARAGLCTQ 488
Query: 158 --YDRKQDCGNLKVFGFLPEPIKKRKRGGTMSSW-----VKAAKVNQKTHRERHQPEDRR 210
Y + C + F L + G + W + A +N H DR
Sbjct: 489 TYYGHQNSCNGVS-FNILGTQLASTDADGVVKLWDTRMTAEVATINTGKHPANKSCFDRS 547
Query: 211 KLGLLEKKKDYRVRA 225
L D +V+A
Sbjct: 548 GQVLAVACDDGKVKA 562
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 19/119 (15%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + + + P A S D VS+WDA C +T+ +SF+ G
Sbjct: 448 LRGHVDSVNDLAWQPFSSSLATASSDKTVSVWDARAGLCTQTYYGHQNSCNGVSFNILGT 507
Query: 108 LIASGSEDLTIDIAHVESGKKVYD--ICIQAATFTVAWHPKQ--------YLLAYACDD 156
+AS D + K++D + + AT HP +LA ACDD
Sbjct: 508 QLASTDADGVV---------KLWDTRMTAEVATINTGKHPANKSCFDRSGQVLAVACDD 557
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,237,496
Number of Sequences: 539616
Number of extensions: 7021054
Number of successful extensions: 27500
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 615
Number of HSP's that attempted gapping in prelim test: 23503
Number of HSP's gapped (non-prelim): 4064
length of query: 432
length of database: 191,569,459
effective HSP length: 120
effective length of query: 312
effective length of database: 126,815,539
effective search space: 39566448168
effective search space used: 39566448168
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)