RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9319
(432 letters)
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 206 bits (527), Expect = 2e-64
Identities = 103/240 (42%), Positives = 148/240 (61%), Gaps = 5/240 (2%)
Query: 197 QKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEFHTHMIN 256
++ HRER QPE R+ LGLLEKKKDY++RA ++KK+KTL+ LK+KA E+N DEF+ MI+
Sbjct: 1 RRQHRERSQPESRKHLGLLEKKKDYKLRAKDYHKKEKTLKALKEKAAERNPDEFYFGMIS 60
Query: 257 ARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQ 316
++ DG H + + S+EQ L+ TQD YV ++R E +KIEK+K H+ D+ +
Sbjct: 61 SKTDDGVHILKREEKEVLSKEQVKLLKTQDLNYVRTKRQAEAKKIEKLKEELHLTDSGSA 120
Query: 317 IENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMS-VAQHVKSKMKLV 375
H+ FVD+E E K FD + T PELL R+ NR ++ + + S V + K K
Sbjct: 121 G-PKHIVFVDDEEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKK 179
Query: 376 KARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVK---PGTPDSAPVYKWKFERKK 432
K + ++L +R ERE+ L VE++L +QR L +K K K D VYKWK ERK+
Sbjct: 180 KRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
>gnl|CDD|227548 COG5223, COG5223, Uncharacterized conserved protein [Function
unknown].
Length = 240
Score = 111 bits (279), Expect = 2e-28
Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 11/249 (4%)
Query: 186 MSSWVKAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEK 245
MS +K HRER QP+DRRK G LEKKKDY RA NKK+ L+ L++KA E+
Sbjct: 1 MSLGFTKVP-QRKVHRERTQPKDRRKYGKLEKKKDYVKRAQDINKKQDELKKLREKARER 59
Query: 246 NEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIK 305
N DE++ H +++ DG + + + ++ TQD + RR +E+ K
Sbjct: 60 NPDEYY-HGMHSVKTDGGVSSIYREDEPTIMDLAKMLKTQDNEIQRCRRKLERYKPMPCG 118
Query: 306 AGNHMIDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVA 365
+++ H FVD K+F + +T EL+ R+ NRL+ + I +
Sbjct: 119 TQIKFEESSL-----HTIFVDMRFGQKEFIPEEFFRTTEELVVRRENRLEKDQIENNELE 173
Query: 366 QHVKSKMKL--VKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPV 423
V S +K + A +L R +R++ L E ++ + R L K K + PV
Sbjct: 174 DSVFSGKLHSKLKEKAATELLLRQKRDKKLAAAEERVELDRLLQGKGG--KKKVVNGKPV 231
Query: 424 YKWKFERKK 432
YKW+ ERK+
Sbjct: 232 YKWRNERKR 240
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 76.6 bits (189), Expect = 1e-15
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
LK H + G Y A GS D + LWD C+RT V +++FS DG
Sbjct: 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGR 106
Query: 108 LIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKY 158
+++S S D TI + VE+GK + + +VA+ P +A + D
Sbjct: 107 ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158
Score = 73.1 bits (180), Expect = 2e-14
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 24/121 (19%)
Query: 48 LKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
L+ H V + F P G + A S+D + LWD C+ T V +++FS D
Sbjct: 131 LRGHTDWVNSVA--FSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPD 188
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDI----CIQ------AATFTVAWHPKQYLLAYACD 155
G + S S D TI K++D+ C+ +VA+ P YLLA +
Sbjct: 189 GEKLLSSSSDGTI---------KLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLA-SGS 238
Query: 156 D 156
+
Sbjct: 239 E 239
Score = 71.2 bits (175), Expect = 8e-14
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 48 LKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
LK H VTC+ F P GK A GS D + +WD +RT + PVR ++ S D
Sbjct: 5 LKGHTGGVTCVA--FSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD 62
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDC 164
G +ASGS D TI + +E+G+ V + + +VA+ P +L+ + DK
Sbjct: 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDK------- 115
Query: 165 GNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQ 197
+KV+ RG T WV + +
Sbjct: 116 -TIKVWDVETGKCLTTLRGHT--DWVNSVAFSP 145
Score = 69.7 bits (171), Expect = 2e-13
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 48 LKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
L H V + F P G+ S D + LWD + C+ T + + V +++FS D
Sbjct: 173 LTGHTGEVNSVA--FSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPD 230
Query: 106 GALIASGSEDLTIDIAHVESGKKVYDICIQAAT---FTVAWHPKQYLLAYACDDK 157
G L+ASGSED TI + + +G+ V + T ++AW P LA D
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECVQ--TLSGHTNSVTSLAWSPDGKRLASGSADG 283
Score = 69.3 bits (170), Expect = 4e-13
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 25/130 (19%)
Query: 41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRA 99
E L H + F P G+ + S+D + +WD C+ T + DW V +
Sbjct: 82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW-VNS 140
Query: 100 ISFSHDGALIASGSEDLTIDIAHVESGKKVYDI----CIQAATFT--------VAWHPKQ 147
++FS DG +AS S+D TI K++D+ C+ T T VA+ P
Sbjct: 141 VAFSPDGTFVASSSQDGTI---------KLWDLRTGKCVA--TLTGHTGEVNSVAFSPDG 189
Query: 148 YLLAYACDDK 157
L + D
Sbjct: 190 EKLLSSSSDG 199
Score = 62.0 bits (151), Expect = 1e-10
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
L+ H + F P G A GS+D + +WD C++T V ++++S DG
Sbjct: 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGK 274
Query: 108 LIASGSEDLTI 118
+ASGS D TI
Sbjct: 275 RLASGSADGTI 285
Score = 39.2 bits (92), Expect = 0.002
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
E L H + + + P GK A GS D + +WD
Sbjct: 252 ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 64.7 bits (156), Expect = 3e-11
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 36 FKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL-TCIRTFQRLD 94
+ ++ L H + + F P G A GS D + LWD + +RT
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284
Query: 95 WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY---DICIQAATFTVAWHPKQYLLA 151
V +++FS DG L+ASGS D T+ + +E+GK + + ++++ P LL
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLV 344
Query: 152 YACDD 156
D
Sbjct: 345 SGGSD 349
Score = 64.3 bits (155), Expect = 4e-11
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 43 EEQNILKAHPVTCICIEFDPTGKYFAVGS-KDALVSLWDAAELTCIRTFQRLDWPVRAIS 101
+ L+ H + + F P GK A GS D + LWD + T PV +++
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205
Query: 102 FSHDG-ALIASGSEDLTIDIAHVESGKKVYDICIQAATFTV-AWHPKQYLLAYACDDK 157
FS DG LIASGS D TI + + +GK + + V ++ P LLA D
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG 263
Score = 58.2 bits (139), Expect = 4e-09
Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 7/149 (4%)
Query: 36 FKEHHKLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAA--ELTCIRTFQ 91
+ L H V + F P GK A GS D V LWD +L T +
Sbjct: 268 WDLRSSSSLLRTLSGHSSSVLSVA--FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325
Query: 92 RLDWPVRAISFSHDGALIASG-SEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLL 150
+ PV ++SFS DG+L+ SG S+D TI + + +GK + + + +V++ P ++
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVV 385
Query: 151 AYACDDKYDRKQDCGNLKVFGFLPEPIKK 179
+ D R D + L +
Sbjct: 386 SSGSTDGTVRLWDLSTGSLLRNLDGHTSR 414
Score = 55.5 bits (132), Expect = 3e-08
Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 3/139 (2%)
Query: 35 KFKEHHKLEEQNILKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWDAAELTCIRTFQRL 93
K + + + L H + F P G A GS D + LWD + +R+
Sbjct: 181 KLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG 240
Query: 94 DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI--QAATFTVAWHPKQYLLA 151
SFS DG+L+ASGS D TI + + S + ++ +VA+ P LLA
Sbjct: 241 HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA 300
Query: 152 YACDDKYDRKQDCGNLKVF 170
D R D K+
Sbjct: 301 SGSSDGTVRLWDLETGKLL 319
Score = 52.0 bits (123), Expect = 3e-07
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
+ + F P G+ + GS D V LWD + + +R V ++ FS DG +A
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428
Query: 111 SGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK 157
SGS D TI +++D+ +V++ P +LA D
Sbjct: 429 SGSSDNTI---------RLWDLKTS--LKSVSFSPDGKVLASKSSDL 464
Score = 44.3 bits (103), Expect = 8e-05
Identities = 31/150 (20%), Positives = 54/150 (36%), Gaps = 9/150 (6%)
Query: 17 SLYQSSVLTDISPKQLDFKFKEHHKLEEQN--ILKAHPVTCICIEFDPTGKYFAVGSKDA 74
S ++ L L + + +L+ H + I F P G+ GS D
Sbjct: 28 LSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDG 87
Query: 75 LVSLWDA-AELTCIRTFQ-RLDWPVRAISF-SHDGALIASGSEDL--TIDIAHVESGKKV 129
+ LWD I++ + D V ++ S DG I S L T+ + + + K+
Sbjct: 88 TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147
Query: 130 YDICI--QAATFTVAWHPKQYLLAYACDDK 157
+ ++A+ P LLA
Sbjct: 148 IRTLEGHSESVTSLAFSPDGKLLASGSSLD 177
Score = 35.4 bits (80), Expect = 0.048
Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 17/102 (16%)
Query: 17 SLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALV 76
SS TD + + D + L H ++F P GK A GS D +
Sbjct: 382 GRVVSSGSTDGTVRLWDLSTGSLLR-----NLDGHTSRVTSLDFSPDGKSLASGSSDNTI 436
Query: 77 SLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTI 118
LWD +SFS DG ++AS S DL++
Sbjct: 437 RLWDLKTSLKS------------VSFSPDGKVLASKSSDLSV 466
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 43.5 bits (103), Expect = 3e-06
Identities = 13/38 (34%), Positives = 16/38 (42%)
Query: 43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
+ LK H + F P G A GS D V +WD
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
Score = 36.6 bits (85), Expect = 9e-04
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
Query: 85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD 131
+RT + PV +++FS DG L+ASGS+D T+ +V+D
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTV---------RVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats
(blades) of the beta propeller domain.
Length = 40
Score = 41.9 bits (99), Expect = 9e-06
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 41 KLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWD 80
E LK H PVT + F P GKY A GS D + LWD
Sbjct: 1 SGELLKTLKGHTGPVTSVA--FSPDGKYLASGSDDGTIKLWD 40
Score = 38.8 bits (91), Expect = 1e-04
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 85 TCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD 131
++T + PV +++FS DG +ASGS+D TI K++D
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTI---------KLWD 40
>gnl|CDD|179257 PRK01231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 295
Score = 34.2 bits (79), Expect = 0.096
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 8/49 (16%)
Query: 7 IPLLGLNPRPSLYQSSVLTDISPKQLDFKFKE----HHKLEEQNILKAH 51
+P+LG+N R L LTDI P +L+FK E H++ EE+ +L+A
Sbjct: 87 VPVLGIN-RGRL---GFLTDIRPDELEFKLAEVLDGHYQEEERFLLEAE 131
>gnl|CDD|234377 TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated
beta-propeller protein. Members of this protein family
consist of seven repeats each of the YVTN family
beta-propeller repeat (see TIGR02276). Members occur
invariably as part of a transport operon that is
associated with PQQ-dependent catabolism of alcohols
such as phenylethanol.
Length = 300
Score = 33.1 bits (76), Expect = 0.23
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 64 GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALI-ASGSEDLTIDIAH 122
K + KD +S+ D A L RTF P R I+FS DG L+ S+ T+ +
Sbjct: 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRP-RGITFSKDGKLLYVCASDSDTVQVID 59
Query: 123 VESGKKVYDI 132
+G+ ++ +
Sbjct: 60 PATGEVLHTL 69
>gnl|CDD|225248 COG2373, COG2373, Large extracellular alpha-helical protein
[General function prediction only].
Length = 1621
Score = 32.8 bits (75), Expect = 0.43
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Query: 59 EFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTI 118
F + A ++L + L + F+RL V S + DG + + D
Sbjct: 66 AFLLSDSSENALQGPADLALVFSEPLAPGQDFRRLSPVVDGYSGNLDGIRLLA-VNDKEF 124
Query: 119 DIAHVESGKKVYDICIQAATFTVAW 143
+ +E K I +
Sbjct: 125 KLDLLEQQ-KDLIITVSKGLKAAEG 148
>gnl|CDD|129591 TIGR00500, met_pdase_I, methionine aminopeptidase, type I.
Methionine aminopeptidase is a cobalt-binding enzyme.
Bacterial and organellar examples (type I) differ from
eukaroytic and archaeal (type II) examples in lacking a
region of approximately 60 amino acids between the 4th
and 5th cobalt-binding ligands. This model describes
type I. The role of this protein in general is to
produce the mature form of cytosolic proteins by
removing the N-terminal methionine [Protein fate,
Protein modification and repair].
Length = 247
Score = 31.9 bits (73), Expect = 0.54
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 17/67 (25%)
Query: 274 DSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVDNEAEAKK 333
E +KLL T+++ Y + IE+ K GN + + I+ AEAK
Sbjct: 115 SPEAEKLLECTEESLY---------KAIEEAKPGNRIGEIGAAIQKY--------AEAKG 157
Query: 334 FDVVKQL 340
F VV++
Sbjct: 158 FSVVREY 164
>gnl|CDD|198352 cd07774, FGGY_1, uncharacterized subgroup; belongs to the FGGY
family of carbohydrate kinases. This subfamily is
composed of uncharacterized carbohydrate kinases. They
are sequence homologous to bacterial glycerol kinase and
have been classified as members of the FGGY family of
carbohydrate kinases. The monomers of FGGY proteins
contain two large domains, which are separated by a deep
cleft that forms the active site. This model includes
both the N-terminal domain, which adopts a ribonuclease
H-like fold, and the structurally related C-terminal
domain.
Length = 430
Score = 32.0 bits (73), Expect = 0.64
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 20/69 (28%)
Query: 77 SLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED-LTIDIAHVESGKKVYDICIQ 135
LW A E + P+ AIS I S E + +D G+ +Y
Sbjct: 46 ELWRAIEKVICQALAAAPDPIAAIS-------ITSVGESGVLVD----ADGEPLYPA--- 91
Query: 136 AATFTVAWH 144
+AW+
Sbjct: 92 -----IAWY 95
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 31.6 bits (71), Expect = 0.87
Identities = 36/192 (18%), Positives = 70/192 (36%), Gaps = 28/192 (14%)
Query: 191 KAAKVNQKTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEF 250
KA + K + E+++K+ L+KK+ + KK + +K K +E
Sbjct: 1614 KAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
Query: 251 HTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHM 310
A+ E E EA E + + + A+ + + EK+K E++K
Sbjct: 1674 KKKAEEAK--KAEEDEKKAAEALKKEAE----EAKKAEELKKKEAEEKKKAEELK----- 1722
Query: 311 IDAANQIENTHVFFVDNEAEAKKFDVVKQLKTLPELLPRKTNRLKVEDIAEMSVAQHVKS 370
+AE + ++ K E +K K ++ + +A K
Sbjct: 1723 -----------------KAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKE 1765
Query: 371 KMKLVKARQAEK 382
+ K + + EK
Sbjct: 1766 EEKKAEEIRKEK 1777
Score = 31.6 bits (71), Expect = 0.96
Identities = 52/245 (21%), Positives = 90/245 (36%), Gaps = 33/245 (13%)
Query: 198 KTHRERHQPEDRRKLGLLEKKKDYRVRADHFNKK----KKTLQILKKKALEKNEDEFHTH 253
K E + E+++K +KK + +AD KK KK KKKA E +
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK------ 1343
Query: 254 MINARLVDGEHFENPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDA 313
A E EAE +EE+ + ++ K+K + K
Sbjct: 1344 ---AAEAAKAEAEAAADEAEAAEEKA--------EAAEKKKEEAKKKADAAKKKAEEKKK 1392
Query: 314 ANQIENTHVFFVDNEAEAKKFDVVKQL---KTLPELLPRKTNRLKVEDIAEMSVAQHVKS 370
A++ + E + KK D +K+ K + +K K D A+ + K+
Sbjct: 1393 ADEAKKK------AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446
Query: 371 ---KMKLVKARQAEKLGKRLERERNLGVVERKLFVQRFLSEKPKLVKPGTPDSAPVYKWK 427
K K +A++AE+ K+ E + ++K + E K + + K
Sbjct: 1447 DEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAA 1506
Query: 428 FERKK 432
+KK
Sbjct: 1507 EAKKK 1511
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 30.6 bits (70), Expect = 1.5
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 22/74 (29%)
Query: 267 NPKPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMIDAANQIENTHVFFVD 326
EAE KL ++A + I+++KAG + D IE
Sbjct: 120 PVSEEAE-----KLCRVAEEALW---------AGIKQVKAGRPLNDIGRAIE-------- 157
Query: 327 NEAEAKKFDVVKQL 340
+ A+ + VV+ L
Sbjct: 158 DFAKKNGYSVVRDL 171
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 30.6 bits (69), Expect = 1.9
Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
Query: 48 LKAHPVTCICIEFDPTGK-YFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
L+ H + F P+ A D +V++WD + + + ++ ++ DG
Sbjct: 121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180
Query: 107 ALIASGSEDLTIDIAHVESGKKV 129
+L+ + S+D ++I G V
Sbjct: 181 SLLCTTSKDKKLNIIDPRDGTIV 203
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 30.1 bits (67), Expect = 2.7
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 213 GLLEKKKDYRVRADHFNKKKKTLQ--ILKKKALEKNEDEFHTHMINARL--VDGEHFENP 268
G ++K R R + N +K L+ IL+KK +E+ E E + R+ ++ E E
Sbjct: 428 GRVDKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERE 487
Query: 269 KPEAEDSEEQKLLMDTQDAKYVSSRRVMEKRKIEKIKAGNHMI 311
+ E E E +L D D +E+ ++EK + ++ +
Sbjct: 488 RLERERLERDRLERDRLDRLERERVDRLERDRLEKARRNSYFL 530
>gnl|CDD|225228 COG2353, COG2353, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 29.2 bits (66), Expect = 3.1
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 79 WDAAELTCIR-TFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAA 137
D ++ +R +F + D + D A + D+TID+A V++G D +++A
Sbjct: 38 IDHLGVSKVRGSFTKFD-----GTVDFDPADPEASKVDVTIDVASVDTGNAGRDAHLRSA 92
Query: 138 T-FTVAWHPK 146
F A +P
Sbjct: 93 DFFDAAKYPT 102
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 29.3 bits (65), Expect = 5.6
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 73 DALVSLWDAAELTCIRTFQRLDWPVRAISFSH-DGALIASGSEDLTIDIAHVESGKKVYD 131
+ +V +WD A + + + V +I +S D L+ASGS+D ++ + + G +
Sbjct: 554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGT 613
Query: 132 ICIQA 136
I +A
Sbjct: 614 IKTKA 618
>gnl|CDD|167141 PRK01021, lpxB, lipid-A-disaccharide synthase; Reviewed.
Length = 608
Score = 28.6 bits (64), Expect = 8.3
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 1 MEGQNFIPLLGLNPRPSLYQSS----VLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCI 56
M + F PL + +Q S VL + FK ++ + ILK +P T I
Sbjct: 266 MRAEGFHPLFNMEE----FQVSGFWEVLLAL------FKLWYRYRKLYKTILKTNPRTVI 315
Query: 57 CIEF 60
CI+F
Sbjct: 316 CIDF 319
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 28.5 bits (64), Expect = 9.6
Identities = 43/198 (21%), Positives = 78/198 (39%), Gaps = 8/198 (4%)
Query: 228 FNKKKKTL-QILKKKALEKNEDEFHTHMINARLVDGEHFENPKPEAEDSEEQKLLMDTQD 286
N KKK L + LKK + +D + E EA+D ++++ L
Sbjct: 1029 TNAKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEG-AEEDDEADDEDDEEELGAAVS 1087
Query: 287 AKYVSSRRV--MEKRKIEKIKAG-NHMIDAANQIENTHVFFVDNEAEAKKFD-VVKQLKT 342
Y+ S + + K K+EK+ A +++NT + E + KF+ +++ +
Sbjct: 1088 YDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLE-DLDKFEEALEEQEE 1146
Query: 343 LPELLPRKTNRLKVEDIAEMSVAQHVKSKMKLVKARQAEKLGKRLERERNLGVVERKLFV 402
+ E K RLK + + S + K K K K +++ K +
Sbjct: 1147 VEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSAD-KSKKASVVGNSKRVDSDE 1205
Query: 403 QRFLSEKPKLVKPGTPDS 420
+R L +KP K + S
Sbjct: 1206 KRKLDDKPDNKKSNSSGS 1223
>gnl|CDD|227408 COG5076, COG5076, Transcription factor involved in chromatin
remodeling, contains bromodomain [Chromatin structure
and dynamics / Transcription].
Length = 371
Score = 28.2 bits (63), Expect = 9.9
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 228 FNKKKKTLQILKKKALEKNEDEFHTHMINARLVDGEHFENPKP 270
+K L+ + K+ E+ + + N +L +G
Sbjct: 191 LLTIQKKLKNGRYKSFEEFVSDLNLMFDNCKLYNGPDSSVYVD 233
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.389
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,255,393
Number of extensions: 2183132
Number of successful extensions: 2005
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1959
Number of HSP's successfully gapped: 74
Length of query: 432
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 332
Effective length of database: 6,502,202
Effective search space: 2158731064
Effective search space used: 2158731064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)