RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9319
(432 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 74.4 bits (181), Expect = 2e-15
Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 9/143 (6%)
Query: 24 LTDISPKQLDFKFKEHHKL--------EEQNILKAHPVTCICIEFDPTGKYFAVGSKDAL 75
+ ++ K+ + +EH + E + + G + GS+D
Sbjct: 169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228
Query: 76 VSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CI 134
+ +WD + C+ T D VR + F G I S ++D T+ + ++ + + +
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 288
Query: 135 QAATFTVAWHPKQYLLAYACDDK 157
+ ++ +H + D+
Sbjct: 289 EHFVTSLDFHKTAPYVVTGSVDQ 311
Score = 71.7 bits (174), Expect = 2e-14
Identities = 17/86 (19%), Positives = 32/86 (37%)
Query: 35 KFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLD 94
K + L H + F GK+ + D + +WD C++T +
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 289
Query: 95 WPVRAISFSHDGALIASGSEDLTIDI 120
V ++ F + +GS D T+ +
Sbjct: 290 HFVTSLDFHKTAPYVVTGSVDQTVKV 315
Score = 57.1 bits (136), Expect = 1e-09
Identities = 35/180 (19%), Positives = 53/180 (29%), Gaps = 47/180 (26%)
Query: 41 KLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
+ E+ L H PVT + F P S+DA + +WD RT + V+
Sbjct: 6 RPPEKYALSGHRSPVTRVI--FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63
Query: 99 AI------------------------------------------SFSHDGALIASGSEDL 116
I S +G I S S D
Sbjct: 64 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 117 TIDIAHVESGKKVYDICI-QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE 175
TI + V++G V + V + L+A +D+ R + L E
Sbjct: 124 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 183
Score = 56.7 bits (135), Expect = 2e-09
Identities = 32/162 (19%), Positives = 47/162 (29%), Gaps = 21/162 (12%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
K E H + + G A S D V +W A C +
Sbjct: 125 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 184
Query: 94 DWPVRAISFSHD--------------------GALIASGSEDLTIDIAHVESGKKVYDIC 133
V IS++ + G + SGS D TI + V +G + +
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Query: 134 IQAATFT-VAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLP 174
V +H + DDK R D N + L
Sbjct: 245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 286
Score = 44.7 bits (104), Expect = 1e-05
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 1/138 (0%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
K + E + H + P G + S+D + +W+ C++TF
Sbjct: 83 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 142
Query: 94 DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI-QAATFTVAWHPKQYLLAY 152
VR + + DG LIAS S D T+ + V + + ++ + ++W P+ +
Sbjct: 143 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 202
Query: 153 ACDDKYDRKQDCGNLKVF 170
+ + K+
Sbjct: 203 SEATGSETKKSGKPGPFL 220
Score = 40.9 bits (94), Expect = 2e-04
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
L AH ++F T Y GS D V +W+
Sbjct: 280 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 73.7 bits (179), Expect = 5e-15
Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 13/117 (11%)
Query: 52 PVTCICIEFDPTGKYFAVGSKDALVSLWDAA--ELTCIRTFQRLDWPVRAISFSHDGALI 109
P++C ++ A+ + V +++ + + + + + V + ++ D I
Sbjct: 9 PISCHA--WNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRI 66
Query: 110 ASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGN 166
+ D V+ + + T+ ++K G+
Sbjct: 67 VTCGTDRNA---------YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 114
Score = 40.2 bits (92), Expect = 4e-04
Identities = 10/55 (18%), Positives = 16/55 (29%)
Query: 41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW 95
K + + LK H +++ P D +W T T L
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRI 94
Score = 36.4 bits (82), Expect = 0.005
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
V +C + A S D+ V L DA + + T P+ A++F + +L+A
Sbjct: 202 GWVHGVCFSANG--SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVA 259
Query: 111 SGSEDLTI 118
+G + +
Sbjct: 260 AGHDCFPV 267
Score = 29.8 bits (65), Expect = 0.62
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 7/79 (8%)
Query: 20 QSSVLTDISPKQLDFKFK-EHHKLEEQNILKAHPVTCICIEFDPTGKY----FAVGSKDA 74
Q + + LD K E + H + I GK F D
Sbjct: 292 QRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDG 351
Query: 75 LVSLWDAAELTCIRTFQRL 93
+S+WD + + L
Sbjct: 352 GMSIWDVR--SLESALKDL 368
Score = 29.8 bits (65), Expect = 0.71
Identities = 10/78 (12%), Positives = 16/78 (20%), Gaps = 10/78 (12%)
Query: 62 PTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW------PVRAISFSHDG----ALIAS 111
P + D + V IS G + +
Sbjct: 287 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT 346
Query: 112 GSEDLTIDIAHVESGKKV 129
D + I V S +
Sbjct: 347 TGMDGGMSIWDVRSLESA 364
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 71.7 bits (174), Expect = 2e-14
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 3/119 (2%)
Query: 43 EEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW--PVRAI 100
+ H I F P G FA GS DA L+D + T+ + + ++
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKY 158
SFS G L+ +G +D ++ + + + +A D +
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Score = 68.6 bits (166), Expect = 2e-13
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Query: 31 QLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF 90
+L + + + +T + F +G+ G D ++WDA +
Sbjct: 251 RLFDLRADQELMTYSHDNIICGITSVS--FSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308
Query: 91 QRLDWPVRAISFSHDGALIASGSEDLTI 118
D V + + DG +A+GS D +
Sbjct: 309 AGHDNRVSCLGVTDDGMAVATGSWDSFL 336
Score = 61.7 bits (148), Expect = 4e-11
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
H + + P + F G+ DA LWD E C +TF + + AI F +G A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 111 SGSEDLTIDI---AHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK 157
+GS+D T + + I +V++ LL DD
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292
Score = 51.3 bits (121), Expect = 1e-07
Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 4/71 (5%)
Query: 41 KLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
++ + L+ H + + + + S+D + +WD+ + V
Sbjct: 44 QMRTRRTLRGHLAKIYAMH--WGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM 101
Query: 99 AISFSHDGALI 109
+++ G +
Sbjct: 102 TCAYAPSGNYV 112
Score = 47.8 bits (112), Expect = 1e-06
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTV 141
++ RT + + A+ + D L+ S S+D + I + KV+ I + T
Sbjct: 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103
Query: 142 AWHPKQYLLAYACDDKYDRKQDC 164
A+ P +A D +
Sbjct: 104 AYAPSGNYVACGGLDNICSIYNL 126
Score = 40.9 bits (94), Expect = 2e-04
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
K + +L H C+ G A GS D+ + +W+
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 36.3 bits (82), Expect = 0.005
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWH 144
TF V ++S + D L SG+ D + + V G ++ + +
Sbjct: 176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFF 235
Query: 145 PKQYLLAYACDDKYDRKQDC 164
P A DD R D
Sbjct: 236 PNGNAFATGSDDATCRLFDL 255
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 70.6 bits (171), Expect = 5e-14
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 10/82 (12%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
H + ++F GK+F KD L++ W I + V + S D I
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-SVLSCDISVDDKYIV 322
Query: 111 SGSEDLTIDIAHVESGKKVYDI 132
+GS D VY++
Sbjct: 323 TGSGDKKA---------TVYEV 335
Score = 55.6 bits (132), Expect = 4e-09
Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 1/107 (0%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
+ + PTG++ AVG + + V + + + + V ++ F++ G
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLH-ESCVLSLKFAYCGKWFV 281
Query: 111 SGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDK 157
S +D ++ G ++ ++ + + DK
Sbjct: 282 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328
Score = 52.1 bits (123), Expect = 6e-08
Identities = 22/168 (13%), Positives = 43/168 (25%), Gaps = 12/168 (7%)
Query: 6 FIPLLGLNPRPSLYQSS----VLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFD 61
F +G P S + ++ P L H + + V +
Sbjct: 3 FQGAMGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVT--IS 60
Query: 62 PTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-----PVRAISFSHDGALIASGSEDL 116
++ G V +WD + +LD +R+ DG + G E
Sbjct: 61 NPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS 119
Query: 117 TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDC 164
T+ I + + + ++ D
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Score = 38.3 bits (87), Expect = 0.001
Identities = 5/31 (16%), Positives = 12/31 (38%)
Query: 50 AHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
+ + + KY GS D ++++
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 67.5 bits (163), Expect = 6e-13
Identities = 25/133 (18%), Positives = 43/133 (32%), Gaps = 19/133 (14%)
Query: 44 EQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAEL------------TCIRTFQ 91
E H + + F G+ GS D V LW+ TC T+
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 92 RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY-------DICIQAATFTVAWH 144
V +++ + + I SGS+D + +SG + + A +
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365
Query: 145 PKQYLLAYACDDK 157
P+ + A D
Sbjct: 366 PEYNVFATGSGDC 378
Score = 60.2 bits (144), Expect = 1e-10
Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 6/110 (5%)
Query: 17 SLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALV 76
SL +S L ++ K + + H + + +Y GSKD V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332
Query: 77 SLWDAAELTCIRTFQRLDWPVRAI------SFSHDGALIASGSEDLTIDI 120
WD + Q V ++ S + + A+GS D I
Sbjct: 333 LFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382
Score = 51.0 bits (120), Expect = 1e-07
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 28/148 (18%)
Query: 29 PKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIR 88
P+++D + H L+ + V C+ F G+Y A G + ++ ++ + +
Sbjct: 48 PREIDVEL--HKSLDHTS-----VVCCVK--FSNDGEYLATGC-NKTTQVYRVSDGSLVA 97
Query: 89 TFQ------------------RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVY 130
D +R++ FS DG +A+G+ED I I +E+ K V
Sbjct: 98 RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 157
Query: 131 DICIQAATFTVAWHPKQYLLAYACDDKY 158
+ + +
Sbjct: 158 ILQGHEQDIYSLDYFPSGDKLVSGSGDR 185
Score = 46.3 bits (108), Expect = 4e-06
Identities = 27/152 (17%), Positives = 48/152 (31%), Gaps = 29/152 (19%)
Query: 40 HKLEEQNILKAH--PVTCICIEFDPTGKYFAV-GSKDALVSLWDAA-----ELTCIRTFQ 91
H L N H P+ ++ D A+ + L++ A ++ ++
Sbjct: 1 HYLVPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLD 60
Query: 92 RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI------------------- 132
V + FS+DG +A+G T + V G V +
Sbjct: 61 HTSV-VCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118
Query: 133 CIQAATFTVAWHPKQYLLAYACDDKYDRKQDC 164
+V + P LA +D+ R D
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150
Score = 40.9 bits (94), Expect = 2e-04
Identities = 30/157 (19%), Positives = 49/157 (31%), Gaps = 10/157 (6%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
H +++ P+G GS D V +WD C T D DG IA
Sbjct: 162 HEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 221
Query: 111 SGSEDLTIDIAHVESGKKVYDICIQAATFT--------VAWHPKQYLLAYACDDKYDRKQ 162
+GS D + + E+G V + + + T V + + D+ +
Sbjct: 222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281
Query: 163 DC--GNLKVFGFLPEPIKKRKRGGTMSSWVKAAKVNQ 197
+ N K P +V + Q
Sbjct: 282 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ 318
Score = 37.1 bits (84), Expect = 0.003
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 47 ILKAH--PVTCICI----EFDPTGKYFAVGSKDALVSLWDAAEL 84
+L+ H V + + P FA GS D +W ++
Sbjct: 345 MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 64.1 bits (154), Expect = 6e-12
Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 8/121 (6%)
Query: 44 EQNILKAH---PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAI 100
++ L+ H +TC Y G+ D ++ ++D+ + D V A+
Sbjct: 4 QRTTLRGHMTSVITC----LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL 59
Query: 101 SFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDR 160
++H G ++ SGS D T+ + ++ G + +T + + Y D
Sbjct: 60 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 161 K 161
Sbjct: 119 T 119
Score = 46.8 bits (109), Expect = 3e-06
Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGALI 109
++ I F + GS + ++++ + D + +++F L+
Sbjct: 282 TNLSAITT-FYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 338
Query: 110 ASGSEDLTIDI 120
A+ +D +
Sbjct: 339 AAVEKDGQSFL 349
Score = 43.0 bits (99), Expect = 4e-05
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI--QAATFTVAW 143
+ +F ++ SGSE+ +I ++ SGK V+ + ++V +
Sbjct: 274 SRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNF 332
Query: 144 HPKQYLLAYACDDK 157
K + A D +
Sbjct: 333 KGKTLVAAVEKDGQ 346
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 63.8 bits (153), Expect = 6e-12
Identities = 14/100 (14%), Positives = 25/100 (25%), Gaps = 5/100 (5%)
Query: 41 KLEEQNILKAHPVTC----ICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWP 96
+ + + + P T + + P G + + V LT +
Sbjct: 2 EFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQ 60
Query: 97 VRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQA 136
S G ASG + I + I
Sbjct: 61 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100
Score = 55.7 bits (132), Expect = 3e-09
Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 55 CICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR-LDWPVRAISFSHDGALIASGS 113
+ + P G A S D + +W+ A L +T + + + S S
Sbjct: 241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 300
Query: 114 EDLTIDIAHVE 124
+ I+ + E
Sbjct: 301 ANGFINFVNPE 311
Score = 37.2 bits (84), Expect = 0.003
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV-------RAISFS 103
H + ++P G FA D + L++ + T F+ +++S
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247
Query: 104 HDGALIASGSEDLTIDIAHVESGKKVYDI----CIQAATFTVAWHPKQYLLAYACDDKY 158
DG IAS S D TI I +V + K I I+ + W + L + +
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGF 304
Score = 33.7 bits (75), Expect = 0.039
Identities = 3/36 (8%), Positives = 11/36 (30%)
Query: 45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
+ I + + T + S + ++ +
Sbjct: 274 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Score = 33.0 bits (73), Expect = 0.059
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 40 HKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLW 79
L + I H + P+G Y A G V +W
Sbjct: 46 GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW 85
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 60.7 bits (145), Expect = 9e-11
Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 19/133 (14%)
Query: 41 KLEEQNILKAHPVT----CICIEFDPTGKYFAVGS-KDALVSLWD--AAELTCIRTFQ-R 92
+ + I+ P T + +DPT A K A V D +++ + F
Sbjct: 2 SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61
Query: 93 LDWPVRAISFS--HDGALIASGSEDLTIDIAHVESGKKVYDICIQAAT---------FTV 141
V + FS + SG E + + K+ + + + +
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 142 AWHPKQYLLAYAC 154
+W + L
Sbjct: 122 SWDFEGRRLCVVG 134
Score = 49.1 bits (115), Expect = 4e-07
Identities = 18/102 (17%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-- 91
F K L+ + I + FA DA + +WD C++ +
Sbjct: 233 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD 292
Query: 92 RLDWPVRAISFSHDG-ALIASGSEDLTIDIAHVESGKKVYDI 132
+ + + G I S S D T+ Y++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTL---------NFYEL 325
Score = 36.4 bits (82), Expect = 0.005
Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 17/80 (21%)
Query: 35 KFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTF---- 90
+F H VT + +Y G + V +W +
Sbjct: 57 QFTGHGS---------SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNV 107
Query: 91 ----QRLDWPVRAISFSHDG 106
Q L P+ IS+ +G
Sbjct: 108 KSEFQVLAGPISDISWDFEG 127
Score = 33.4 bits (74), Expect = 0.043
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 14/90 (15%)
Query: 86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFT----- 140
I Q D A+ D TI + V + K V +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 302
Query: 141 VAWHPKQYLLAYACDDKYDRKQDCGNLKVF 170
V +++ + D G L +
Sbjct: 303 VVATGNGRIISLSLD---------GTLNFY 323
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 59.9 bits (143), Expect = 2e-10
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 4/116 (3%)
Query: 3 GQNFIPLLGLNPRPSLYQSSVLTDISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFDP 62
Q ++ R ++ D F F+ H + IEF P
Sbjct: 205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK---DTNLAYPVNSIEFSP 261
Query: 63 TGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTI 118
K+ D ++S W+ I+ F + + + + ++ + D T
Sbjct: 262 RHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTF 316
Score = 54.9 bits (130), Expect = 6e-09
Identities = 13/108 (12%), Positives = 30/108 (27%), Gaps = 8/108 (7%)
Query: 47 ILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL---DWPVRAIS 101
I +A ++ I P+ + S D ++++ + P+ +
Sbjct: 6 IEQAPKDYISDIK--IIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 102 FSHD-GALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQY 148
F + I G+ I + + A + K
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG 111
Score = 47.5 bits (111), Expect = 2e-06
Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 15/125 (12%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL---------------DW 95
+ +A S D V++ + + +
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252
Query: 96 PVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD 155
PV +I FS + + D I ++++ KK+ + V +L A
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATS 312
Query: 156 DKYDR 160
D +
Sbjct: 313 DDTFK 317
Score = 31.0 bits (68), Expect = 0.27
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELT 85
+N K + + + + + + D A + T
Sbjct: 287 KNFAKFNEDSVVK--IACSDNILCLATSDDTFKTNAAIDQT 325
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 56.8 bits (135), Expect = 2e-09
Identities = 9/90 (10%), Positives = 25/90 (27%), Gaps = 4/90 (4%)
Query: 38 EHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV 97
+ L++ + Y+ + ++ +D R + +
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKT----RKVTEVKNNL 317
Query: 98 RAISFSHDGALIASGSEDLTIDIAHVESGK 127
+ S D + +D I +E +
Sbjct: 318 TDLRLSADRKTVMVRKDDGKIYTFPLEKPE 347
Score = 44.5 bits (103), Expect = 1e-05
Identities = 19/154 (12%), Positives = 34/154 (22%), Gaps = 6/154 (3%)
Query: 59 EFDPT-GKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED-- 115
+F P G A S+ + D + ++ + +R + D +
Sbjct: 9 DFSPLDGDLIAFVSRGQAF-IQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG 65
Query: 116 LTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGFLPE 175
+ I +GK F + A D D K
Sbjct: 66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125
Query: 176 PIKKRKRGGTMSSWVKAAKVNQKTHRERHQPEDR 209
+ A H E +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159
Score = 33.3 bits (74), Expect = 0.046
Identities = 5/42 (11%), Positives = 10/42 (23%)
Query: 48 LKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRT 89
+ + K V D + + + RT
Sbjct: 310 VTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERT 351
Score = 28.7 bits (62), Expect = 1.4
Identities = 16/114 (14%), Positives = 32/114 (28%), Gaps = 4/114 (3%)
Query: 50 AHPVTCICIEFDPTGKYFAVGSKD--ALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGA 107
P+ + K + + ++D F+ V A+ +G
Sbjct: 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT-GKAEKFEENLGNVFAMGVDRNGK 98
Query: 108 LIASGSEDLTIDIAHVESGKKVYDICIQAATFT-VAWHPKQYLLAYACDDKYDR 160
++ I +E+GK + A T +AY K+
Sbjct: 99 FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 152
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 55.5 bits (132), Expect = 5e-09
Identities = 9/95 (9%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
P G + ++ +D + I+ ++F G +
Sbjct: 250 LTELYFTGLRSPKDPNQIYGVLNR-LAKYDLKQRKLIKAANLDHTY-YCVAFDKKGDKLY 307
Query: 111 SGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP 145
G + + + ++ +KV +
Sbjct: 308 LGGTFNDLAVFNPDTLEKV-------KNIKLPGGD 335
Score = 54.4 bits (129), Expect = 1e-08
Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 2/88 (2%)
Query: 60 FDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ-RLDWPVRAISFSHDGA-LIASGSEDLT 117
+Y V + + + D A T ++ + + D +
Sbjct: 4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63
Query: 118 IDIAHVESGKKVYDICIQAATFTVAWHP 145
I +++ K + + + V
Sbjct: 64 IYGIDLDTCKNTFHANLSSVPGEVGRSM 91
Score = 43.2 bits (100), Expect = 4e-05
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ 91
+ H C+ FD G +G +++++ L ++ +
Sbjct: 286 KAANLDHTYYCVA--FDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 55.2 bits (131), Expect = 5e-09
Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
+ K L+ H C++F+ + S D V LWD IR L
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTL 299
Query: 94 DW-----PVRAISFSHDGALIASGSEDLTIDI 120
+ V I S+ + A GS + T +
Sbjct: 300 ESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
Score = 54.4 bits (129), Expect = 1e-08
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 41 KLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVR 98
+L+ +LK H V G GS D + +W A C+RT V
Sbjct: 5 ELKSPKVLKGHDDHVITC---LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 99 AISFSHD 105
+ +
Sbjct: 62 SSQMRDN 68
Score = 51.7 bits (122), Expect = 7e-08
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 10/136 (7%)
Query: 35 KFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLD 94
K + + L+ H ++FD G + GS D + +WD CI T
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGHQ 217
Query: 95 WPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYAC 154
+ + ++ SG+ D T+ I +++G+ + + H
Sbjct: 218 SLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP------NKHQSAVTCLQFN 269
Query: 155 DDKYDRKQDCGNLKVF 170
+ D G +K++
Sbjct: 270 KNFVITSSDDGTVKLW 285
Score = 51.0 bits (120), Expect = 1e-07
Identities = 16/120 (13%), Positives = 43/120 (35%), Gaps = 11/120 (9%)
Query: 60 FDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV-RAISFSHDGALIASGSEDLTI 118
+ G+ D+ V +WD C++T Q + + + + S+D T+
Sbjct: 223 MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTV 282
Query: 119 DIAHVESGKKVYDICI------QAATFTVAWHPKQYLLAYACDDKYDRKQDCGNLKVFGF 172
+ +++G+ + ++ + + + + A + + + L V F
Sbjct: 283 KLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK----LLVLDF 338
Score = 46.0 bits (107), Expect = 5e-06
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 2/87 (2%)
Query: 79 WDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDI-CIQAA 137
W EL + + D V G I SGS+D T+ + +GK + +
Sbjct: 1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 59
Query: 138 TFTVAWHPKQYLLAYACDDKYDRKQDC 164
++ + +
Sbjct: 60 VWSSQMRDNIIISGSTDRTLKVWNAET 86
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 54.6 bits (129), Expect = 7e-09
Identities = 17/126 (13%), Positives = 33/126 (26%), Gaps = 8/126 (6%)
Query: 45 QNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL-DWPVRAIS 101
+ H +T + GK + ++ WD + R F + + I
Sbjct: 5 DQVRYGHNKAITALS--SSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 102 FSHDGALIASGSEDLTIDIAHVESGKKVYDIC---IQAATFTVAWHPKQYLLAYACDDKY 158
+ G L +D + SG + + +A + AC
Sbjct: 63 TTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 159 DRKQDC 164
Sbjct: 123 AIYSHG 128
Score = 47.7 bits (111), Expect = 1e-06
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAIS--FSHDGAL 108
H C+ + P A GS D V +W+ + + + + +++ +
Sbjct: 223 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 282
Query: 109 IASGSEDLTIDIAHVESGKKVYDI 132
I S +D I K +++
Sbjct: 283 IVSAGQDSNI---------KFWNV 297
Score = 35.3 bits (79), Expect = 0.011
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 41 KLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
I AH ++ + +D+ + W+
Sbjct: 257 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 53.7 bits (127), Expect = 2e-08
Identities = 11/101 (10%), Positives = 29/101 (28%), Gaps = 9/101 (8%)
Query: 65 KYFAVGSKDALVSLWDAAELTCIRTFQRLDWP--VRAISFSHDGA-LIASGSEDLTIDIA 121
Y ++ + + D ++ + D + G A+ ++ ++
Sbjct: 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Query: 122 HVESGKKVY------DICIQAATFTVAWHPKQYLLAYACDD 156
+ +G+ + + F A P LA
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESP 102
Score = 53.3 bits (126), Expect = 2e-08
Identities = 8/82 (9%), Positives = 23/82 (28%), Gaps = 1/82 (1%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA 110
+ ++ +D + I+ +++ S DG+ +
Sbjct: 237 RIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSY-YSVNVSTDGSTVW 295
Query: 111 SGSEDLTIDIAHVESGKKVYDI 132
G + E+ +K +
Sbjct: 296 LGGALGDLAAYDAETLEKKGQV 317
Score = 42.9 bits (99), Expect = 5e-05
Identities = 6/41 (14%), Positives = 12/41 (29%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQ 91
P + + G +G ++ +DA L
Sbjct: 278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 51.7 bits (122), Expect = 6e-08
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG 106
+ H + + V + DA + F+ + + +I+ S D
Sbjct: 253 QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDE 311
Query: 107 A--LIASGSEDLTIDIAHVESGKKVYDI 132
L A + D T+ I ESG+++ +
Sbjct: 312 KPLLYALSTGDKTLYIHDAESGEELRSV 339
Score = 45.9 bits (107), Expect = 4e-06
Identities = 11/62 (17%), Positives = 24/62 (38%)
Query: 45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH 104
H + I + D +A+ + D + + DA +R+ +L + I+ +
Sbjct: 294 AKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTAD 353
Query: 105 DG 106
G
Sbjct: 354 MG 355
Score = 43.2 bits (100), Expect = 3e-05
Identities = 18/121 (14%), Positives = 31/121 (25%), Gaps = 20/121 (16%)
Query: 62 PTGKYFAV-----GSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA------ 110
P + V + + D I P + DG+ IA
Sbjct: 11 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVF 68
Query: 111 ----SGSEDLTIDIAHVESGKKVYDI-CIQAATFTVAWHPKQYLLAYACDDKYDRKQDCG 165
G +++ + DI A F V +P ++ + D K
Sbjct: 69 SRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYP--WMTSLTPDGKTLLFYQFS 126
Query: 166 N 166
Sbjct: 127 P 127
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 50.2 bits (118), Expect = 3e-07
Identities = 13/103 (12%), Positives = 28/103 (27%), Gaps = 19/103 (18%)
Query: 46 NILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQR----------- 92
N KAH + + + S D + +WD L +
Sbjct: 8 NAGKAHDADIFSVS----ACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGL 63
Query: 93 --LDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDIC 133
+D + + L+A+ S + + + +
Sbjct: 64 HHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVI 106
Score = 49.1 bits (115), Expect = 6e-07
Identities = 16/126 (12%), Positives = 38/126 (30%), Gaps = 14/126 (11%)
Query: 30 KQLDFKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRT 89
+++ H + AH + + F+ +G+ D + WD I T
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 326
Query: 90 FQ----RLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYD-------ICIQAAT 138
++ ++ G +A D+ ++ G + +C
Sbjct: 327 LNMHCDDIEIEEDILAVDEHGDSLAEPG---VFDVKFLKKGWRSGMGADLNESLCCVCLD 383
Query: 139 FTVAWH 144
++ W
Sbjct: 384 RSIRWF 389
Score = 38.3 bits (87), Expect = 0.002
Identities = 13/168 (7%), Positives = 29/168 (17%), Gaps = 36/168 (21%)
Query: 26 DISPKQLDFKFKEHHKLEEQNILKAHPVTCICIEFD-PTGKYFAVGSKDALVSLWDAAEL 84
D + + + H IE D A S + +
Sbjct: 40 DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99
Query: 85 TCIRTFQRLDWP----------VRAISFSHDG-----ALIASGSEDLTIDIAHVESGKKV 129
+ A+ + + + T I
Sbjct: 100 DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159
Query: 130 YDICIQAATFT-------------------VAWHPKQYLLAYACDDKY 158
+ + T V + +A ++
Sbjct: 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGL-IATGFNNGT 206
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 50.0 bits (118), Expect = 3e-07
Identities = 13/87 (14%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Query: 61 DPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDI 120
D + ++L D ++ S G + D ID+
Sbjct: 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAV-HISRMSASGRYLLVIGRDARIDM 87
Query: 121 AHVESGK--KVYDICIQAATFTVAWHP 145
+ + + KV +I I +V
Sbjct: 88 IDLWAKEPTKVAEIKIGIEARSVESSK 114
Score = 32.6 bits (73), Expect = 0.10
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 7/95 (7%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTC-----IRTFQRLDWPVRAISFSHDG-ALIAS 111
+G+Y V +DA + + D I+ + ++ IA
Sbjct: 67 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAG 126
Query: 112 GSEDLTIDIAHVESGKKVYDICIQAATF-TVAWHP 145
I E+ + + + T T +HP
Sbjct: 127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 49.1 bits (115), Expect = 4e-07
Identities = 12/67 (17%), Positives = 20/67 (29%), Gaps = 6/67 (8%)
Query: 40 HKLEEQNILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPV 97
H L+ + V C + G +D + +WD L C R V
Sbjct: 3 HSLQRIHCRSETSKGVYC----LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58
Query: 98 RAISFSH 104
+ +
Sbjct: 59 LCLQYDE 65
Score = 42.9 bits (99), Expect = 4e-05
Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 4/124 (3%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
+ + + +L H ++FD S D + +W+ + +RT
Sbjct: 120 WDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS--ASGDRTIKVWNTSTCEFVRTLNGH 177
Query: 94 DWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYA 153
+ + + L+ SGS D TI + +E G + + + +++ A
Sbjct: 178 KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGA 235
Query: 154 CDDK 157
D K
Sbjct: 236 YDGK 239
Score = 40.6 bits (93), Expect = 2e-04
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 45 QNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDA---------AELTCIRTFQRLDW 95
+ + K G+ D + +WD A C+RT
Sbjct: 209 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 268
Query: 96 PVRAISFSHDGALIASGSEDLTI 118
V + F D I S S D TI
Sbjct: 269 RVFRLQF--DEFQIVSSSHDDTI 289
Score = 36.7 bits (83), Expect = 0.004
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 83 ELTCIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVA 142
L I V + + D I SG D TI I + + + +
Sbjct: 4 SLQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61
Query: 143 WHPKQYLLAYACDDKYDRKQDCGN 166
+ ++ ++ + D
Sbjct: 62 QYDERVIITGSSDSTVRVWDVNTG 85
Score = 33.7 bits (75), Expect = 0.037
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 35 KFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
+ L H ++FD S D + +WD
Sbjct: 250 DPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 45.7 bits (106), Expect = 4e-06
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 11/83 (13%)
Query: 51 HPVTCICIEFDPTGKYFAVGSKDALVSLWDAAE-LTCIRTFQRLDWPVRAISFSHDGALI 109
P E + A GS D + ++ + I+ V + + +
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL 272
Query: 110 ASGSEDLTIDIAHVESGKKVYDI 132
S D I K +++
Sbjct: 273 VSSGADACI---------KRWNV 286
Score = 36.9 bits (83), Expect = 0.003
Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 13/65 (20%)
Query: 47 ILKAH--PVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSH 104
+ H +T + +P GS D + W ++ + + + ++ S
Sbjct: 8 TISGHNKGITALT--VNP----LISGSYDGRIMEWSSSSMHQDHSNL-----IVSLDNSK 56
Query: 105 DGALI 109
Sbjct: 57 AQEYS 61
Score = 36.1 bits (81), Expect = 0.006
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Query: 86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICI--QAATFTVAW 143
I A + L+A+GS D I I V+ K+ + + W
Sbjct: 207 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW 266
Query: 144 HPKQYLLAYACDDK 157
L++ + D
Sbjct: 267 ETPSTLVS-SGADA 279
Score = 35.3 bits (79), Expect = 0.011
Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 86 CIRTFQRLDWPVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP 145
++T + + A++ + + SGS D I S + + I + +
Sbjct: 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVS----LDNSK 56
Query: 146 KQYLLAYACDDKYDRKQDC 164
Q + + DD
Sbjct: 57 AQEYSSISWDDTLKVNGIT 75
Score = 33.8 bits (75), Expect = 0.030
Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 47 ILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWD 80
L AH + ++ DA + W+
Sbjct: 253 ALNAHKDGVNNLLWETPST-LVSSGADACIKRWN 285
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 45.6 bits (106), Expect = 6e-06
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 9/113 (7%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRL 93
+ + + ++A P V VS+ D
Sbjct: 184 VIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243
Query: 94 DWPVRAISFSHDGA-LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHP 145
P I+ + DG + + S T+ + + AT V +P
Sbjct: 244 PDP-AGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT-------ATMAVGKNP 288
Score = 38.7 bits (88), Expect = 8e-04
Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 57 CIEFDPTGKY-FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIAS 111
I P GK + S VS+ D A T T P A G I S
Sbjct: 248 GIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNP-YAS-----GQFIGS 297
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 45.6 bits (107), Expect = 7e-06
Identities = 9/92 (9%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 56 ICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSED 115
++D + ++L D + S G + D
Sbjct: 24 QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAV-HISRLSASGRYLFVIGRD 82
Query: 116 LTIDIAHVESGK--KVYDICIQAATFTVAWHP 145
+++ + + V +I I + ++
Sbjct: 83 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSK 114
Score = 38.6 bits (89), Expect = 0.001
Identities = 12/110 (10%), Positives = 28/110 (25%), Gaps = 9/110 (8%)
Query: 58 IEFDPTGKYFAVGSKDALVSLWDAAELTC-----IRTFQRLDWPVRAISFSHDGALIASG 112
+G+Y V +D V++ D I+ + + +G
Sbjct: 67 SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAG 126
Query: 113 SEDLT----IDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY 158
+ +D +E K + P+ + +
Sbjct: 127 AYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 176
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 44.2 bits (103), Expect = 1e-05
Identities = 7/71 (9%), Positives = 16/71 (22%), Gaps = 10/71 (14%)
Query: 61 DPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHDG--ALIASGSEDLTI 118
DP + + K + + +I S D + +
Sbjct: 246 DPGTQVWVYDLKSKQRVARWDLAQQKVEP-------LVSIQVSEDDKPLFYGLTATSDLV 298
Query: 119 DIAHVESGKKV 129
+ +G
Sbjct: 299 -VMDARTGALQ 308
Score = 43.1 bits (100), Expect = 4e-05
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 18/117 (15%)
Query: 58 IEFDPTGKYFAV----------GSKDALVSLWDAAELTCIRTFQRLD---WPVRAISFSH 104
P K V G++ +V + D L V + +
Sbjct: 22 FAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHAQHVPSPYNTA 81
Query: 105 D---GALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPK-QYLLAYACDDK 157
G + + + +++ K I A V +P C+
Sbjct: 82 FSADGKRLYVANITPAASVTVIDAVSKKMLSEIDTAA-CVLAYPAGDDRFTALCESG 137
Score = 33.8 bits (76), Expect = 0.036
Identities = 9/92 (9%), Positives = 19/92 (20%), Gaps = 17/92 (18%)
Query: 77 SLWDAAELTCIRTFQRLDWPVRAISFSHDGALIA----------SGSEDLTIDIAHVESG 126
++DA + P + + D G+ ++I +
Sbjct: 1 YVYDADAKKLLGQIDGGFGP--GFAIAPDRKASVVATTYFSRGSHGTRTDVVEIIDNTTL 58
Query: 127 KKVYDICIQAATFTVAWHPKQYLLAYACDDKY 158
+ I P Y
Sbjct: 59 DHAGE--IVIPAKHAQHVPSPYN---TAFSAD 85
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 38.8 bits (89), Expect = 0.001
Identities = 15/118 (12%), Positives = 24/118 (20%), Gaps = 21/118 (17%)
Query: 60 FDPTGKYFAV----------GSKDALVSLWDAAELTCIRT--------FQRLDWPVRAIS 101
+G FA+ G + V ++D I F I
Sbjct: 72 AGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV-HIIG 130
Query: 102 FSHDGA-LIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACDDKY 158
A L+ V A+ F + +C
Sbjct: 131 NCASSACLLFFLFGSSAAAGLSVPGASDDQLT-KSASCFHIHPGAAATHYLGSCPASL 187
Score = 37.3 bits (85), Expect = 0.003
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 50 AHPVTCICIEFDPTGKY--FAVGSKDALVSLWDAAELTCIRTFQRLDWPVRAISFSHD 105
++ I G +A + ++ ++DAA + + P ++S ++
Sbjct: 311 SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP-ESLSVQNE 367
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 38.7 bits (88), Expect = 0.001
Identities = 8/97 (8%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 67 FAVGSKDALVSLWDAAELTCIRTFQRLDWP--VRAISFSHDGA-LIASGSEDLTIDIAHV 123
+ + + +W+ + Q +D P V+ + S D L + + +
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66
Query: 124 ESGKKV----YDICIQAATFTVAWHPKQYLLAYACDD 156
+ + + ++ + + +
Sbjct: 67 APDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN 103
Score = 36.3 bits (82), Expect = 0.006
Identities = 14/86 (16%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 34 FKFKEHHKLEEQNILKAHPVTCICIEFDPTGKY-FAVGSKDALVSLWDAAELTCIRTFQR 92
+ L ++ P + P +Y + + V + A TF
Sbjct: 19 WNLNHEGALTLTQVVD-VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA 77
Query: 93 LDWPVRA---ISFSHDGALIASGSED 115
+ IS H G + GS +
Sbjct: 78 ESALPGSLTHISTDHQGQFVFVGSYN 103
>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal
domain {Pseudomonas nautica [TaxId: 2743]}
Length = 441
Score = 34.1 bits (78), Expect = 0.027
Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 12/87 (13%)
Query: 57 CIEFDPTGKYFAV-GSKDALVSLWDAAEL-----------TCIRTFQRLDWPVRAISFSH 104
+ P GKYF G VS+ +L I L +F
Sbjct: 262 GLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG 321
Query: 105 DGALIASGSEDLTIDIAHVESGKKVYD 131
G + D + ++ K Y+
Sbjct: 322 RGNAYTTLFIDSQVCKWNIADAIKHYN 348
Score = 26.4 bits (58), Expect = 8.5
Identities = 13/95 (13%), Positives = 23/95 (24%), Gaps = 2/95 (2%)
Query: 58 IEFDPTGKYFAVGSKDA-LVSLWDAAELTCIRTFQRLDWPVRAISFSHDGALIASGSEDL 116
+ D TGKY ++ + R + G G +
Sbjct: 181 TDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVE-RIAAAVKAGNFKTIGDSKV 239
Query: 117 TIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLA 151
+ ES Y + +Y +A
Sbjct: 240 PVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIA 274
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 28.5 bits (62), Expect = 1.4
Identities = 18/137 (13%), Positives = 35/137 (25%), Gaps = 8/137 (5%)
Query: 44 EQNILKAHPVTCI--------CIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW 95
E + A P I + FD G+ F + + + + R F
Sbjct: 23 ELQTITAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKA 82
Query: 96 PVRAISFSHDGALIASGSEDLTIDIAHVESGKKVYDICIQAATFTVAWHPKQYLLAYACD 155
AI DG L D + + ++ + A+ +
Sbjct: 83 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG 142
Query: 156 DKYDRKQDCGNLKVFGF 172
+ + + G
Sbjct: 143 FYFTDFRGYSTNPLGGV 159
>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 182
Score = 27.8 bits (61), Expect = 1.6
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 12/115 (10%)
Query: 203 RHQPEDRRKLGLLEKKKDYRVRADHFNKKKKTLQILKKKALEKNEDEF---HTHMINARL 259
+ + + + H + L + + D HTH A
Sbjct: 64 DENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFE 123
Query: 260 VDGEHFENP-------KPEAEDSEEQKLLMDTQDAKYVSS--RRVMEKRKIEKIK 305
+ + + NP + +LMD Q + V+ + + + K+E+I+
Sbjct: 124 HENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIE 178
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma
chain {Escherichia coli [TaxId: 562]}
Length = 225
Score = 27.9 bits (62), Expect = 2.3
Identities = 4/23 (17%), Positives = 10/23 (43%)
Query: 221 YRVRADHFNKKKKTLQILKKKAL 243
R + + + Q+L +K +
Sbjct: 26 LRYDYGQYTWRAASSQMLDRKGM 48
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 25.8 bits (57), Expect = 2.7
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 214 LLEKKKDYRVRADHFNKKK----KTLQILKKKALEK 245
+L+K K ++RA +K ++ Q + +K +
Sbjct: 1 MLQKPKSVKLRALRSPRKFGVAGRSCQEVLRKGCLR 36
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 87
Score = 25.9 bits (57), Expect = 3.2
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 213 GLLEKKKDYRVRADHFNKKK----KTLQILKKKALEK 245
+L + K ++RA H K ++ Q L +K +
Sbjct: 3 AVLRQPKCVKLRALHSACKFGVAARSCQELLRKGCVR 39
>d1ku1a_ a.118.3.1 (A:) ARF guanine-exchange factor 2, Gea2 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 211
Score = 27.2 bits (60), Expect = 3.3
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 215 LEKKKDYRVRADHFNKK-KKTLQILKKKALEKNED 248
+++K ++ + FN+K KK + +L +K ++
Sbjct: 9 MDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDS 43
>d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9,
Nqo9 {Thermus thermophilus [TaxId: 274]}
Length = 154
Score = 26.4 bits (57), Expect = 5.1
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 1/72 (1%)
Query: 49 KAHPVTCICIEFDPTGKYFAVGSKDALVSLWDAAELTCIRTFQRLDW-PVRAISFSHDGA 107
A P I +E V + + +++ L CI + P AI +D
Sbjct: 36 AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 95
Query: 108 LIASGSEDLTID 119
+ DL
Sbjct: 96 MADYEYSDLVYG 107
>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16,
HRV-16 [TaxId: 31708]}
Length = 460
Score = 26.9 bits (59), Expect = 5.1
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 270 PEAEDSEEQKLLMDTQDAKYVSSRRVM-EKRKIEKIKAG-NHMIDAA 314
+ +D + KL +D + E RK +KI AG +I+A+
Sbjct: 133 NKTKDISKLKLALDKYGVDLPMITFLKDELRKKDKIAAGKTRVIEAS 179
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379
{Pseudomonas syringae pv. tomato [TaxId: 323]}
Length = 256
Score = 26.3 bits (58), Expect = 7.5
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 5/29 (17%)
Query: 101 SFSHDGALIASGSEDLTIDIAHVESGKKV 129
SF+ + L +G I++ H+ G V
Sbjct: 119 SFTFETPLQEAG-----IEVRHITDGCNV 142
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.389
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,623,414
Number of extensions: 78674
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 115
Length of query: 432
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 344
Effective length of database: 1,199,356
Effective search space: 412578464
Effective search space used: 412578464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)