BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9320
(183 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y9J|A Chain A, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|B Chain B, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|C Chain C, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|D Chain D, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|E Chain E, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|F Chain F, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|G Chain G, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|H Chain H, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|I Chain I, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|J Chain J, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|K Chain K, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|L Chain L, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|M Chain M, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|N Chain N, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|O Chain O, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|P Chain P, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|Q Chain Q, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|R Chain R, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|S Chain S, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|T Chain T, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|U Chain U, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|V Chain V, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|W Chain W, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
pdb|2Y9J|X Chain X, Three-Dimensional Model Of Salmonella's Needle Complex
At Subnanometer Resolution
Length = 186
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 13 EVLAEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDE 56
+VL +D++ +E+D + + +VLA D +++ V+ E +E
Sbjct: 9 QVLPGRDKMLYVAAQNERDTLWARQVLARGDYDKNARVINENEE 52
>pdb|3GR1|A Chain A, Periplamic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-392)
pdb|3GR1|B Chain B, Periplamic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-392)
pdb|3GR1|C Chain C, Periplamic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-392)
pdb|3GR1|D Chain D, Periplamic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-392)
pdb|3GR1|E Chain E, Periplamic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-392)
pdb|3GR1|F Chain F, Periplamic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-392)
pdb|3GR1|G Chain G, Periplamic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-392)
pdb|3GR1|H Chain H, Periplamic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-392)
Length = 227
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 13 EVLAEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDE 56
+VL +D++ +E+D + + +VLA D +++ V+ E +E
Sbjct: 20 QVLPGRDKMLYVAAQNERDTLWARQVLARGDYDKNARVINENEE 63
>pdb|3GR0|A Chain A, Periplasmic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-362)
pdb|3GR0|B Chain B, Periplasmic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-362)
pdb|3GR0|C Chain C, Periplasmic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-362)
pdb|3GR0|D Chain D, Periplasmic Domain Of The T3ss Inner Membrane Protein
Prgh From S.Typhimurium (Fragment 170-362)
Length = 197
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 13 EVLAEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDE 56
+VL +D++ +E+D + + +VLA D +++ V+ E +E
Sbjct: 20 QVLPGRDKMLYVAAQNERDTLWARQVLARGDYDKNARVINENEE 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.292 0.113 0.259
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,911,190
Number of Sequences: 62578
Number of extensions: 120643
Number of successful extensions: 383
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 325
Number of HSP's gapped (non-prelim): 88
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)
S2: 48 (23.1 bits)