BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9320
         (183 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q4R729|SH321_MACFA SH3 domain-containing protein 21 OS=Macaca fascicularis GN=SH3D21
           PE=2 SV=1
          Length = 692

 Score = 32.7 bits (73), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 2/85 (2%)

Query: 25  EVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSS 84
           E S  ++ +   EVL +E VA   EVL ++      EVL +E V  S EVL +       
Sbjct: 486 EASPNEERLLRGEVLPKEGVASKGEVLPKEGVASKGEVLPKEGVA-SKEVLPKGGVASKE 544

Query: 85  EVLAEKDVEQSSEVLTEKDEVQSSE 109
           EVL ++ V    E+L  K+ V S E
Sbjct: 545 EVLPKEGVASKEEMLP-KEGVASKE 568


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.292    0.113    0.259 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,611,397
Number of Sequences: 539616
Number of extensions: 1797044
Number of successful extensions: 20057
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 2072
Number of HSP's that attempted gapping in prelim test: 12977
Number of HSP's gapped (non-prelim): 6244
length of query: 183
length of database: 191,569,459
effective HSP length: 110
effective length of query: 73
effective length of database: 132,211,699
effective search space: 9651454027
effective search space used: 9651454027
T: 11
A: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)
S2: 57 (26.6 bits)