Query psy9320
Match_columns 183
No_of_seqs 29 out of 31
Neff 2.3
Searched_HMMs 29240
Date Sat Aug 17 00:23:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ajj_A NS5A, nonstructural pro 38.2 11 0.00038 23.0 1.0 16 158-173 9-24 (28)
2 1ghc_A GH1; chromosomal protei 11.6 85 0.0029 20.8 1.2 27 149-175 30-56 (75)
3 2lso_A Histone H1X; structural 15.4 50 0.0017 23.1 0.0 21 155-175 39-59 (83)
4 1uhm_A Histone H1, histone HHO 11.4 1.3E+02 0.0044 20.4 2.1 18 159-176 44-61 (78)
5 2rqp_A Heterochromatin protein 11.3 75 0.0026 22.1 0.9 19 157-175 46-64 (88)
6 1uss_A Histone H1; DNA binding 7.9 2.1E+02 0.0071 19.9 2.1 19 159-177 48-66 (88)
7 1ust_A Histone H1; DNA binding 7.5 2.2E+02 0.0075 20.2 2.1 19 159-177 47-65 (93)
8 1zrx_A Stomoxyn; helical pepti 3.4 6.5E+02 0.022 16.2 2.0 18 160-177 2-19 (42)
9 2l36_A MSI594; antimicrobial p 3.3 3.5E+02 0.012 16.0 0.6 16 165-180 2-17 (26)
10 2klq_A CBD, P105MCM, DNA repli 3.1 3.6E+02 0.012 19.6 0.7 22 154-175 55-76 (114)
No 1
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=38.20 E-value=11 Score=23.01 Aligned_cols=16 Identities=38% Similarity=0.611 Sum_probs=14.1
Q ss_pred cccchHHHHHHHHHHH
Q psy9320 158 VKNLPNFVNKSLKKMV 173 (183)
Q Consensus 158 Vq~~a~~~~~~~~~~~ 173 (183)
+++|-|-+|.++|||+
T Consensus 9 l~~lh~~~~~~ikk~~ 24 (28)
T 2ajj_A 9 IYSLHKQINRGLKKIV 24 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4788999999999997
No 2
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=11.61 E-value=85 Score=20.84 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=19.6
Q ss_pred ccccccccccccchHHHHHHHHHHHhh
Q psy9320 149 EKDENKGENVKNLPNFVNKSLKKMVKI 175 (183)
Q Consensus 149 eade~t~~dVq~~a~~~~~~~~~~~~~ 175 (183)
..-+.++.||..|.-.++..||+++.-
T Consensus 30 Kyi~~~~~~~~~~~~~l~~aLk~~v~~ 56 (75)
T 1ghc_A 30 KALAAGGYDVEKNNSRIKLGLKSLVSK 56 (75)
T ss_dssp GSSSSSSCCSSSSHHHHHHHTTTHHHH
T ss_pred HHHHHccCCchhHHHHHHHHHHHHHhc
Confidence 333344568888888899999998753
No 3
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=15.42 E-value=50 Score=23.07 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=17.6
Q ss_pred ccccccchHHHHHHHHHHHhh
Q psy9320 155 GENVKNLPNFVNKSLKKMVKI 175 (183)
Q Consensus 155 ~~dVq~~a~~~~~~~~~~~~~ 175 (183)
+-|+.+|..++++.||++|.-
T Consensus 39 ~~~~~~~~~~lk~aLK~~v~~ 59 (83)
T 2lso_A 39 WFDQQNGRTYLKYSIKALVQN 59 (83)
Confidence 368889999999999999853
No 4
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=11.35 E-value=1.3e+02 Score=20.39 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.6
Q ss_pred ccchHHHHHHHHHHHhhh
Q psy9320 159 KNLPNFVNKSLKKMVKII 176 (183)
Q Consensus 159 q~~a~~~~~~~~~~~~~~ 176 (183)
.+|..++++.||++|.--
T Consensus 44 ~~~~~~l~~aLk~~v~~G 61 (78)
T 1uhm_A 44 SNFDLYFNNAIKKGVEAG 61 (78)
T ss_dssp STHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 789999999999998643
No 5
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=11.32 E-value=75 Score=22.06 Aligned_cols=19 Identities=11% Similarity=0.253 Sum_probs=16.2
Q ss_pred ccccchHHHHHHHHHHHhh
Q psy9320 157 NVKNLPNFVNKSLKKMVKI 175 (183)
Q Consensus 157 dVq~~a~~~~~~~~~~~~~ 175 (183)
|+.+|..++++.||++|.-
T Consensus 46 ~~~~~~~~lk~aLk~~v~~ 64 (88)
T 2rqp_A 46 ELERRGYLLKQALKRELNR 64 (88)
T ss_dssp HHHTTTTTHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHhc
Confidence 6678999999999999864
No 6
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=7.91 E-value=2.1e+02 Score=19.93 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=15.8
Q ss_pred ccchHHHHHHHHHHHhhhe
Q psy9320 159 KNLPNFVNKSLKKMVKIIS 177 (183)
Q Consensus 159 q~~a~~~~~~~~~~~~~~~ 177 (183)
++|..++++.||+||.--.
T Consensus 48 ~~~~~~lk~aLK~~v~~G~ 66 (88)
T 1uss_A 48 SNFDYLFNSAIKKCVENGE 66 (88)
T ss_dssp STHHHHHHHHHHHHHHHSS
T ss_pred HhHHHHHHHHHHHHHHcCC
Confidence 7899999999999986433
No 7
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=7.46 E-value=2.2e+02 Score=20.16 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=15.8
Q ss_pred ccchHHHHHHHHHHHhhhe
Q psy9320 159 KNLPNFVNKSLKKMVKIIS 177 (183)
Q Consensus 159 q~~a~~~~~~~~~~~~~~~ 177 (183)
.+|..++++.||+||.--.
T Consensus 47 ~~~~~~lk~aLK~~v~~G~ 65 (93)
T 1ust_A 47 SNFDLYFNNAIKKGVEAGD 65 (93)
T ss_dssp TTHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 7899999999999986433
No 8
>1zrx_A Stomoxyn; helical peptide in TFE, antimicrobial protein, antibiotic; NMR {Synthetic}
Probab=3.35 E-value=6.5e+02 Score=16.21 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=14.0
Q ss_pred cchHHHHHHHHHHHhhhe
Q psy9320 160 NLPNFVNKSLKKMVKIIS 177 (183)
Q Consensus 160 ~~a~~~~~~~~~~~~~~~ 177 (183)
+|..-.|+.+||+-..||
T Consensus 2 ~frk~fn~~ikkikhtis 19 (42)
T 1zrx_A 2 GFRKHFNKLVKKVKHTIS 19 (42)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhH
Confidence 677788998888776665
No 9
>2l36_A MSI594; antimicrobial peptides, LPS, AMP, TR-NOE, antimicrobial PROT; NMR {Synthetic}
Probab=3.26 E-value=3.5e+02 Score=15.99 Aligned_cols=16 Identities=50% Similarity=0.532 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhheeee
Q psy9320 165 VNKSLKKMVKIISIVL 180 (183)
Q Consensus 165 ~~~~~~~~~~~~~~~~ 180 (183)
+.|.|||.-|-|..||
T Consensus 2 igkalkkakkgigavl 17 (26)
T 2l36_A 2 IGKALKKAKKGIGAVL 17 (26)
T ss_dssp THHHHHHHGGGGGHHH
T ss_pred hhHHHHHHHhhhHHHH
Confidence 3578888888776654
No 10
>2klq_A CBD, P105MCM, DNA replication licensing factor MCM6; PRE-RC, CDT1, CBD structure, ATP-BIND cycle, DNA-binding, nucleotide-binding, nucleus; HET: DNA; NMR {Homo sapiens}
Probab=3.11 E-value=3.6e+02 Score=19.61 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=17.2
Q ss_pred cccccccchHHHHHHHHHHHhh
Q psy9320 154 KGENVKNLPNFVNKSLKKMVKI 175 (183)
Q Consensus 154 t~~dVq~~a~~~~~~~~~~~~~ 175 (183)
+-.++..-...+.|-|++|+|-
T Consensus 55 seeel~~e~~lv~kVI~rLI~~ 76 (114)
T 2klq_A 55 SEEELINKKRIIEKVIHRLTHY 76 (114)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhhh
Confidence 4456666778899999999983
Done!