Query psy9320
Match_columns 183
No_of_seqs 29 out of 31
Neff 2.3
Searched_HMMs 13730
Date Sat Aug 17 00:23:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9320.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9320hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ghca_ a.4.5.13 (A:) Histone 23.9 13 0.00096 24.0 1.2 26 153-178 34-59 (75)
2 d1usta_ a.4.5.13 (A:) Histone 18.6 34 0.0025 22.6 2.5 26 155-180 42-67 (92)
3 d1ussa_ a.4.5.13 (A:) Histone 11.6 57 0.0042 21.3 2.1 24 156-179 45-68 (88)
4 d1hsta_ a.4.5.13 (A:) Histone 11.3 70 0.0051 20.0 2.4 27 154-180 34-60 (74)
5 d3bc8a1 c.67.1.9 (A:23-467) Se 8.4 58 0.0042 24.4 1.2 30 146-175 413-442 (445)
6 d1t1ua2 c.43.1.3 (A:402-616) C 6.7 89 0.0065 23.1 1.6 27 151-177 188-214 (215)
7 d1nd9a_ a.6.1.6 (A:) N-termina 5.4 74 0.0054 19.4 0.3 20 156-175 3-22 (49)
8 d1p3wa_ c.67.1.3 (A:) Cysteine 4.8 93 0.0068 22.8 0.6 28 147-174 354-381 (391)
9 d2o3la1 a.69.4.1 (A:14-95) Hyp 4.7 95 0.0069 20.3 0.5 21 152-172 61-81 (82)
10 d1j2jb_ a.7.8.1 (B:) ADP-ribos 4.3 1.6E+02 0.012 17.6 1.4 10 165-174 26-35 (41)
No 1
>d1ghca_ a.4.5.13 (A:) Histone H1, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=23.89 E-value=13 Score=24.00 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=21.1
Q ss_pred ccccccccchHHHHHHHHHHHhhhee
Q psy9320 153 NKGENVKNLPNFVNKSLKKMVKIISI 178 (183)
Q Consensus 153 ~t~~dVq~~a~~~~~~~~~~~~~~~~ 178 (183)
++..|+++|..++++.||++|+-=.+
T Consensus 34 ~~~~~~~~~~~~l~~aLk~~v~~G~l 59 (75)
T d1ghca_ 34 AGGYDVEKNNSRIKLGLKSLVSKGTL 59 (75)
T ss_dssp SSSCCSSSSHHHHHHHTTTHHHHTSS
T ss_pred HhccCccchHHHHHHHHHHHHhcCCE
Confidence 44679999999999999999875433
No 2
>d1usta_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.62 E-value=34 Score=22.61 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=21.1
Q ss_pred ccccccchHHHHHHHHHHHhhheeee
Q psy9320 155 GENVKNLPNFVNKSLKKMVKIISIVL 180 (183)
Q Consensus 155 ~~dVq~~a~~~~~~~~~~~~~~~~~~ 180 (183)
+.|+++|...+++.||++|.--.++.
T Consensus 42 ~~~~~~~~~~l~~aLk~~v~~G~L~q 67 (92)
T d1usta_ 42 VGSASNFDLYFNNAIKKGVEAGDFEQ 67 (92)
T ss_dssp HHTSTTHHHHHHHHHHHHHHTTSEEC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcEEe
Confidence 45889999999999999998655544
No 3
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.65 E-value=57 Score=21.31 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.3
Q ss_pred cccccchHHHHHHHHHHHhhheee
Q psy9320 156 ENVKNLPNFVNKSLKKMVKIISIV 179 (183)
Q Consensus 156 ~dVq~~a~~~~~~~~~~~~~~~~~ 179 (183)
.+.++|...++..||++|.--.++
T Consensus 45 ~~~~~f~~~l~~aLk~~v~~G~L~ 68 (88)
T d1ussa_ 45 KTSSNFDYLFNSAIKKCVENGELV 68 (88)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSSEE
T ss_pred cchHhHHHHHHHHHHHHHHcCcEE
Confidence 456788899999999999754433
No 4
>d1hsta_ a.4.5.13 (A:) Histone H5, globular domain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.32 E-value=70 Score=20.04 Aligned_cols=27 Identities=7% Similarity=-0.012 Sum_probs=20.2
Q ss_pred cccccccchHHHHHHHHHHHhhheeee
Q psy9320 154 KGENVKNLPNFVNKSLKKMVKIISIVL 180 (183)
Q Consensus 154 t~~dVq~~a~~~~~~~~~~~~~~~~~~ 180 (183)
+..+.++|.-.+++.||++|+-=.++.
T Consensus 34 ~y~~~~~~~~~l~~aLk~~v~~G~l~q 60 (74)
T d1hsta_ 34 HYKVGHNADLQIKLSIRRLLAAGVLKQ 60 (74)
T ss_dssp HSCCCTTHHHHHHHHHHHHHHTTSEEE
T ss_pred HCCCchhHHHHHHHHHHHHHHcCcEEe
Confidence 345678888999999999997544443
No 5
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=8.44 E-value=58 Score=24.44 Aligned_cols=30 Identities=20% Similarity=0.040 Sum_probs=25.1
Q ss_pred eeeccccccccccccchHHHHHHHHHHHhh
Q psy9320 146 VLAEKDENKGENVKNLPNFVNKSLKKMVKI 175 (183)
Q Consensus 146 ~IAeade~t~~dVq~~a~~~~~~~~~~~~~ 175 (183)
.|+-.--.|++|+..|.+.++|.+|++-|.
T Consensus 413 ~i~~~~~~T~eDID~~v~~L~kilk~~rk~ 442 (445)
T d3bc8a1 413 NAAAAIGMKMQDVDLFIKRLDKCLNIVRKE 442 (445)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEeCcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 356666789999999999999999998764
No 6
>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.72 E-value=89 Score=23.12 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=22.1
Q ss_pred ccccccccccchHHHHHHHHHHHhhhe
Q psy9320 151 DENKGENVKNLPNFVNKSLKKMVKIIS 177 (183)
Q Consensus 151 de~t~~dVq~~a~~~~~~~~~~~~~~~ 177 (183)
..++..|.+.|.+.++++|..|..|+.
T Consensus 188 ~s~~~t~~~~f~~~L~~al~~m~~ll~ 214 (215)
T d1t1ua2 188 HSCKETSSVEFAEAVGASLVDMRDLCS 214 (215)
T ss_dssp TTSTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHh
Confidence 344556889999999999999998864
No 7
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial translation initiation factor IF2 {Escherichia coli [TaxId: 562]}
Probab=5.40 E-value=74 Score=19.37 Aligned_cols=20 Identities=20% Similarity=0.301 Sum_probs=15.7
Q ss_pred cccccchHHHHHHHHHHHhh
Q psy9320 156 ENVKNLPNFVNKSLKKMVKI 175 (183)
Q Consensus 156 ~dVq~~a~~~~~~~~~~~~~ 175 (183)
-.|+.||+.|+.+..+++.-
T Consensus 3 vTVk~lA~~v~~~vd~Ll~Q 22 (49)
T d1nd9a_ 3 VTIKTLAAERQTSVERLVQQ 22 (49)
T ss_dssp ECTTHHHHHHSSSHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHH
Confidence 46899999999887776653
No 8
>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=93 Score=22.76 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=20.6
Q ss_pred eeccccccccccccchHHHHHHHHHHHh
Q psy9320 147 LAEKDENKGENVKNLPNFVNKSLKKMVK 174 (183)
Q Consensus 147 IAeade~t~~dVq~~a~~~~~~~~~~~~ 174 (183)
|+-.--+|.+||..|.+.+.+.|+|+-+
T Consensus 354 iS~~~~nt~edid~l~~~l~~~l~~lr~ 381 (391)
T d1p3wa_ 354 FSLGRFTTEEEIDYTIELVRKSIGRLRD 381 (391)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4444456889999999999887776543
No 9
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=4.71 E-value=95 Score=20.25 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=16.0
Q ss_pred cccccccccchHHHHHHHHHH
Q psy9320 152 ENKGENVKNLPNFVNKSLKKM 172 (183)
Q Consensus 152 e~t~~dVq~~a~~~~~~~~~~ 172 (183)
+=.|+|++.|+|-+-++-|..
T Consensus 61 ev~G~D~~~f~deli~~~k~~ 81 (82)
T d2o3la1 61 DITGEDVASFADELVANAKTY 81 (82)
T ss_dssp HHHCSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHhcccc
Confidence 346889999999887776653
No 10
>d1j2jb_ a.7.8.1 (B:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.31 E-value=1.6e+02 Score=17.59 Aligned_cols=10 Identities=50% Similarity=0.713 Sum_probs=7.8
Q ss_pred HHHHHHHHHh
Q psy9320 165 VNKSLKKMVK 174 (183)
Q Consensus 165 ~~~~~~~~~~ 174 (183)
-|+-+|.|||
T Consensus 26 ANrLIK~mVk 35 (41)
T d1j2jb_ 26 ANKLIKEMVQ 35 (41)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5778888886
Done!