RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9320
(183 letters)
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 38.1 bits (89), Expect = 0.001
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 20 EVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVLAEEN 79
+ E E +EVQ V+AE VA + E + V+ + EE VV + E
Sbjct: 851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVV 910
Query: 80 EV--QSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEVLAE 137
V EV+A EQ + +S +A++ E + V+ ++E E AE
Sbjct: 911 VVETTHPEVIAAPVTEQPQVIT------ESDVAVAQEVAEHAEPVVEPQDETADIEEAAE 964
Query: 138 KDEVQNSEVLAEKDE 152
EV +E
Sbjct: 965 TAEVVVAEPEVVAQP 979
Score = 27.3 bits (61), Expect = 6.4
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 7/107 (6%)
Query: 12 DEVLAEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQS 71
V EV ++ V+ + + S+V ++VA+ +E + E + A E +
Sbjct: 910 VVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAE----T 965
Query: 72 SEVLAEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQ 118
+EV+ E EV + V E EV + E
Sbjct: 966 AEVVVAEPEVVAQPAAP---VVAEVAAEVETVTAVEPEVAPAQVPEA 1009
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 36.7 bits (84), Expect = 0.005
Identities = 39/135 (28%), Positives = 74/135 (54%)
Query: 25 EVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSS 84
E++ E+++ E + + +E E+D +N E AEENV ++ E EEN ++
Sbjct: 920 EINLINKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENV 979
Query: 85 EVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEVLAEKDEVQNS 144
E E++VE++ E E++ ++ E E++VE++ E E+ + ++ E + E E +
Sbjct: 980 EENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDE 1039
Query: 145 EVLAEKDENKGENVK 159
E + E +EN ENV+
Sbjct: 1040 ENVEEIEENAEENVE 1054
Score = 32.8 bits (74), Expect = 0.084
Identities = 35/135 (25%), Positives = 72/135 (53%)
Query: 40 AEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSSEVLAEKDVEQSSEVL 99
AEE+V + +E E++ +N E EENV ++ E EEN ++ E E+++E++ E
Sbjct: 951 AEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEEN 1010
Query: 100 TEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEVLAEKDEVQNSEVLAEKDENKGENVK 159
E++ ++ E E++VE+ E + E +E E+ +E + +E ENV+
Sbjct: 1011 VEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVE 1070
Query: 160 NLPNFVNKSLKKMVK 174
+ + +++++ V+
Sbjct: 1071 EIEENIEENIEENVE 1085
Score = 32.1 bits (72), Expect = 0.17
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 8/153 (5%)
Query: 7 SGNQGDEVLAEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEE 66
SGN E+ E+++ + + + +E EED ++ E E++ +N E EE
Sbjct: 914 SGNIAHEINLINKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEE 973
Query: 67 NVVQSSEVLAEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEK 126
NV ++ E EEN ++ E E++VE++ E E++ E+++E++ E E+
Sbjct: 974 NVEENVEENVEENVEENVEENVEENVEENIEENVEEN--------VEENIEENVEEYDEE 1025
Query: 127 NEVQSSEVLAEKDEVQNSEVLAEKDENKGENVK 159
N + E + E DE E+ +EN EN++
Sbjct: 1026 NVEEVEENVEEYDEENVEEIEENAEENVEENIE 1058
Score = 32.1 bits (72), Expect = 0.19
Identities = 44/160 (27%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 16 AEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVL 75
AE++ + +E + E++ ++ E EE+V ++ E E++ +N E EEN+ ++ E
Sbjct: 951 AEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEEN 1010
Query: 76 AEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEVL 135
EEN ++ E E++VE+ E + E DE E+ E++ E++ E E+N + E
Sbjct: 1011 VEENIEENVEEYDEENVEEVEENVEEYDEENVEEI--EENAEENVEENIEENIEEYDEEN 1068
Query: 136 AEKDEVQNSEVLAEK-DENKGENVKNLPNFVNKSLKKMVK 174
E+ E E + E +EN ENV+ + V +++++ +
Sbjct: 1069 VEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAE 1108
Score = 28.2 bits (62), Expect = 3.0
Identities = 39/149 (26%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 17 EKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVLA 76
E++ ++ E + E++ ++ E EE+V ++ E E++ +N E EEN+ ++ E
Sbjct: 964 EENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYD 1023
Query: 77 EENEVQSSEVLAEKD------VEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQ 130
EEN + E + E D +E+++E E++ ++ E E++VE+ E + E E
Sbjct: 1024 EENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEEN 1083
Query: 131 SSEVLAEKDEVQNSEVLAEKDENKGENVK 159
E + E E V +EN EN +
Sbjct: 1084 VEENVEENVEEIEENVEENVEENAEENAE 1112
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 33.8 bits (77), Expect = 0.053
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 12 DEVLAEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQS 71
+E AEKDE E E++ ++ ++ L E DE N + EENV ++
Sbjct: 4021 EEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSD-----LAEDDEKMNEDGF-EENVQEN 4074
Query: 72 SEVLAEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQS 131
E E+ V+S E L E+ + + ++ + A + ++ + T+K V
Sbjct: 4075 EEST--EDGVKSDEEL-EQGEVPEDQAIDNHPKMDAKSTFASAEADEEN---TDKGIVGE 4128
Query: 132 SEVLAEKDEVQNSEVLAEKDENKGENVKN 160
+E L E+D V+ + + E E+
Sbjct: 4129 NEELGEEDGVRGNGTADGEFEQVQEDTST 4157
Score = 28.4 bits (63), Expect = 2.6
Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 10/166 (6%)
Query: 4 SHKSGNQGDEVLAEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVL 63
++ + +E A +E + ++ + +ED + S+ + DE+Q
Sbjct: 3916 LLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQE 3975
Query: 64 AEENVVQSSEVL---------AEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEK 114
+E L +E +V L + D+E + E E D + E + ++
Sbjct: 3976 NNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADA-EKDEPMQDE 4034
Query: 115 DVEQSSEVLTEKNEVQSSEVLAEKDEVQNSEVLAEKDENKGENVKN 160
D + + L E + LAE DE N + E + E+ ++
Sbjct: 4035 DPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTED 4080
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 29.4 bits (66), Expect = 1.1
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 10/90 (11%)
Query: 80 EVQSSEVLAEKDVEQSSEVLTEKDEVQSSEV----------LAEKDVEQSSEVLTEKNEV 129
E S ++L +K E + VL+ D+ S+ + D +Q + ++
Sbjct: 84 EPDSQDLLLDKRGEHKARVLSATDDDTHSQTDDIIKQVTQKAGQDDSDQQEKNSQSQSAS 143
Query: 130 QSSEVLAEKDEVQNSEVLAEKDENKGENVK 159
Q+ + + Q SE + EK+ + K
Sbjct: 144 QAESLEHVQQSAQTSEKVDEKEPLLTKTDK 173
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 29.5 bits (66), Expect = 1.2
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 78 ENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSE-VLAEKDVEQSSEVLTEKNEVQSSEVLA 136
E + +++ + EKD E+ + K+ ++ E VL +K+ + V + E S E L
Sbjct: 8 EANINNNDRMQEKDDEKQDQ----KNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLK 63
Query: 137 EKDEVQNS---------EVLAEKDENKGE 156
DEV+ S EVL K+E++ E
Sbjct: 64 IADEVKKSTKEESKQLLEVLKTKEEHQKE 92
>gnl|CDD|225148 COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain)
[Inorganic ion transport and metabolism].
Length = 451
Score = 28.4 bits (64), Expect = 2.2
Identities = 25/118 (21%), Positives = 53/118 (44%)
Query: 42 EDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSSEVLAEKDVEQSSEVLTE 101
D+ ++L +KD ++LA + +E+L E + V E ++EVL E
Sbjct: 7 LDIENLIDLLEDKDLSVLRKLLARLHPADVAEILEELPGRERVVVWRLLPKEDAAEVLGE 66
Query: 102 KDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEVLAEKDEVQNSEVLAEKDENKGENVK 159
D+ E++ E+ + + E + ++++L E + E+L+ D + V+
Sbjct: 67 LDDEVREEIIEALSDEELAAAIEELDIDDAADLLDELPDEVRDELLSLLDPEERARVR 124
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 394
Score = 27.6 bits (61), Expect = 3.8
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 112 AEKDVEQSSEVLTEKNEVQSSEVLAEKDEVQNSEVLAEKDENKGENVKNLPNFVNKSLK 170
+ + S E+L+E N +E L +++V S E D K E +K ++ N K
Sbjct: 147 EKMFLPTSYELLSELNIGVINEEL-IENQVHGSVYEMENDPKKDEMIKLFEDYENTYTK 204
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 27.5 bits (61), Expect = 4.7
Identities = 25/139 (17%), Positives = 58/139 (41%), Gaps = 10/139 (7%)
Query: 27 SSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSSEV 86
SS+K Q++ + + SS ++ ++ N++ + + +SE EE E +
Sbjct: 22 SSQKRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIE 81
Query: 87 LAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEVLAEKDEVQNSEV 146
+ + + K+E S+++ D ++ E+ ++ E+ E
Sbjct: 82 VEQNQSDVLKSSSIVKEESISTDMDGIDDDSLDRKLKLERENLRKREI----------EE 131
Query: 147 LAEKDENKGENVKNLPNFV 165
LAE++ ++G + P V
Sbjct: 132 LAEENFSRGNKLFVYPQVV 150
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 27.2 bits (60), Expect = 5.5
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 112 AEKDVEQSSEVLTEKNEVQSSEVLAEKDEVQNSEVLAEKDENKGENVKNLPNFVNKSLK 170
A+K V E+ E N E + K++V + +++D +K +K +++NK K
Sbjct: 160 AKKFVNTKYELEQELNIGVIDEKI-IKEQVHGIVIESKEDPDKESLIKMFESYMNKLDK 217
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 27.1 bits (60), Expect = 6.6
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 80 EVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEVLAEKD 139
++ E + V + T+ + K+ + E L EK V+ SE + + D
Sbjct: 394 KINIVEESNKNSVHFDTLYKTKIFYHKKKINQNNKEQDIKKEELLEKEFVKKSEKIPKND 453
Query: 140 EVQNS-EVLAEKDENKG-ENVKNLPNFVNKSLKK 171
E+ ++ E+ +K NK E KN+ NK +
Sbjct: 454 ELLDNLELAKQKFFNKDIELSKNMLQKFNKFKNE 487
>gnl|CDD|183874 PRK13165, PRK13165, cytochrome c-type biogenesis protein CcmE;
Reviewed.
Length = 160
Score = 26.5 bits (59), Expect = 6.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 122 VLTEKNEVQSSEVLAEKDE 140
VL E N +++ EVLA+ DE
Sbjct: 114 VLEEGNHIEAKEVLAKHDE 132
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 26.8 bits (59), Expect = 7.9
Identities = 27/146 (18%), Positives = 59/146 (40%), Gaps = 2/146 (1%)
Query: 13 EVLAEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSS 72
E + +SS+ S S +A ++ + V E++E + E +E+ +
Sbjct: 408 ERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEG 467
Query: 73 EVLAEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSS 132
E EE EV ++ +E+++E SSE + +E + ++ S + + SS
Sbjct: 468 EDEEEEEEV-EADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSS 526
Query: 133 EVLAE-KDEVQNSEVLAEKDENKGEN 157
++E E + + + +
Sbjct: 527 VQPESPQEEPLQPESMDAESVGEESD 552
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional.
Length = 467
Score = 26.7 bits (58), Expect = 8.9
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 16 AEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVL 75
A+ E ++ E + D ++ A A V + D+ S V++++ V
Sbjct: 303 AKAGETKAGEARASAD----AKAGAHTHAAAMPAVPEQADDAARSPATTPVAVIRAAHV- 357
Query: 76 AEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEVL 135
E+ + E A K E+ + + E S + EK E++ + EK +SSE +
Sbjct: 358 --EHGLDKGEPRASKPAEKPAAATDKPPEKASDKPSPEKTSEKTPDKSHEKQLDKSSEPV 415
Query: 136 AEK 138
AEK
Sbjct: 416 AEK 418
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.292 0.113 0.259
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,935,034
Number of extensions: 700181
Number of successful extensions: 734
Number of sequences better than 10.0: 1
Number of HSP's gapped: 593
Number of HSP's successfully gapped: 209
Length of query: 183
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 92
Effective length of database: 6,901,388
Effective search space: 634927696
Effective search space used: 634927696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)
S2: 56 (25.4 bits)