RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9320
(183 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-05
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 17/90 (18%)
Query: 91 DVEQSSEVLTEKDEVQSSEVLAE--------KDVEQS-SEVLTEKNEVQSSEVLAEKDEV 141
D E KD + V + KDV+ +L+ K E+ ++ KD V
Sbjct: 8 DFETGEHQYQYKDILS---VFEDAFVDNFDCKDVQDMPKSILS-KEEID--HIIMSKDAV 61
Query: 142 QNSEVLAEKDENKGENVKNLPNFVNKSLKK 171
+ L +K E + + FV + L+
Sbjct: 62 SGTLRLFWTLLSKQEEM--VQKFVEEVLRI 89
Score = 41.4 bits (96), Expect = 9e-05
Identities = 27/168 (16%), Positives = 59/168 (35%), Gaps = 26/168 (15%)
Query: 22 QSSEVSSEKDEVQS--SEVLAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVL---- 75
SS + +Q+ +L + VL VQN++ N+ S ++L
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNL--SCKILLTTR 273
Query: 76 -AEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEV 134
+ + S+ ++ S LT + +L K ++ + L EV ++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPD---EVKSLLL-KYLDCRPQDLPR--EVLTTNP 327
Query: 135 LAEKDEVQNSEVLAEKDENKGENVKNLPNFVNKSLKKMVKIISIVLLK 182
++AE + N + L +++ S+ +L+
Sbjct: 328 RRLS-------IIAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLE 367
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 5e-04
Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 69/229 (30%)
Query: 3 TSHKSGNQGDEVLAEKDEVQSSEVSSEKDEVQSSEVLAEEDVAQSSEVLTEKDEV----- 57
T H G +G + ++ + + D +E + +E S+ ++
Sbjct: 1673 TIHFGGEKGKRI---RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 58 QNS------------EVLAEENVVQSSEVLAEEN-----E----VQSSEVLAEKD-VE-- 93
Q + E L + ++ + A E ++V++ + VE
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFA---GHSLGEYAALASLADVMSIESLVEVV 1786
Query: 94 ----QSSEVLTEKDE----------VQSSEVLAEKDVEQSSEVLTEKNEVQSSEVLAEKD 139
+ +V +DE + V A E V+ E+ ++ ++
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV-ERVGKRTGWLV---- 1841
Query: 140 EV--QNSE----VLAEKDENKGENVKNLPNFVNKSLKKMVKIISIVLLK 182
E+ N E V A G+ ++ L N L + K+ I +++
Sbjct: 1842 EIVNYNVENQQYVAA------GD-LRALDTVTNV-LNFI-KLQKIDIIE 1881
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A
{Thermus thermophilus} PDB: 2yvx_A
Length = 473
Score = 32.6 bits (75), Expect = 0.056
Identities = 20/87 (22%), Positives = 32/87 (36%)
Query: 39 LAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSSEVLAEKDVEQSSEV 98
+ E+ E L E D EVL E + + E VL +++EV
Sbjct: 24 MEEKLAVSLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEV 83
Query: 99 LTEKDEVQSSEVLAEKDVEQSSEVLTE 125
L+ + +E L + E+L E
Sbjct: 84 LSHLSPEEQAEYLKTLPPWRLREILEE 110
Score = 29.5 bits (67), Expect = 0.56
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 51 LTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEV 110
+ EK V E L E + EVL E + + E E VLT + +++EV
Sbjct: 24 MEEKLAVSLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEV 83
Query: 111 LAEKDVEQSSEVLTEKNEVQSSEVLAE--KDEVQNSEVLAEKDENKGENVKNL 161
L+ E+ +E L + E+L E D++ ++ L + + L
Sbjct: 84 LSHLSPEEQAEYLKTLPPWRLREILEELSLDDL--ADALQAVRKEDPAYFQRL 134
>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein;
2.30A {Thermus thermophilus} PDB: 2yvz_A
Length = 278
Score = 28.7 bits (65), Expect = 0.83
Identities = 20/87 (22%), Positives = 32/87 (36%)
Query: 39 LAEEDVAQSSEVLTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSSEVLAEKDVEQSSEV 98
+ E+ E L E D EVL E + + E VL +++EV
Sbjct: 4 MEEKLAVSLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEV 63
Query: 99 LTEKDEVQSSEVLAEKDVEQSSEVLTE 125
L+ + +E L + E+L E
Sbjct: 64 LSHLSPEEQAEYLKTLPPWRLREILEE 90
Score = 26.4 bits (59), Expect = 5.7
Identities = 24/87 (27%), Positives = 37/87 (42%)
Query: 51 LTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEV 110
+ EK V E L E + EVL E + + E E VLT + +++EV
Sbjct: 4 MEEKLAVSLQEALQEGDTRALREVLEEIHPQDLLALWDELKGEHRYVVLTLLPKAKAAEV 63
Query: 111 LAEKDVEQSSEVLTEKNEVQSSEVLAE 137
L+ E+ +E L + E+L E
Sbjct: 64 LSHLSPEEQAEYLKTLPPWRLREILEE 90
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.3 bits (57), Expect = 4.7
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Query: 75 LAEENEVQSSEVLAEKDVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEV 134
+A+ + + K E+ + L E D +S+V+ ++ E++ + L E N+ QS +V
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDA--ASKVMEQEWREKAKKDLEEWNQRQSEQV 131
Query: 135 LAEKDEVQNSE--VLAEKDEN 153
K + ++ + D +
Sbjct: 132 EKNKINNRIADKAFYQQPDAD 152
Score = 25.5 bits (55), Expect = 8.6
Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 110 VLAEKDVEQSSEVLTEKNEVQSSEVLAEKDEVQNSEVLAEKDENKGENVKNLPNFVNKSL 169
+ + Q E + + E Q L E D + E + + K+L + +
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKR-LQELDAASK----VMEQEWREKAKKDLEEWNQRQS 128
Query: 170 KKMVKII 176
+++ K
Sbjct: 129 EQVEKNK 135
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 26.2 bits (57), Expect = 7.4
Identities = 16/147 (10%), Positives = 41/147 (27%), Gaps = 9/147 (6%)
Query: 33 VQSSEVLAEEDVAQSS--EVLTEKDEVQNSEVLAEENVVQSSEVLAEENEVQSSEVLAEK 90
V +A + Q S + + SE+ + V EV+ + + +
Sbjct: 15 VPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRV---TAEVEVAPITTDA 71
Query: 91 DVEQSSEVLTEKDEVQSSEVLAEKDVEQSSEVLTEKNEVQSSEVLAEKDEVQNSEVLAEK 150
+ K + + ++++E LA + ++ + +
Sbjct: 72 TSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKSEKEIWSD 131
Query: 151 DENKGENVKNLPNFVNKSLKKMVKIIS 177
+ +M K I+
Sbjct: 132 VVPFVRRTTDSD----FDPSRMYKFIT 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.292 0.113 0.259
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,156,198
Number of extensions: 115190
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 28
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (21.7 bits)
S2: 54 (25.1 bits)