Query psy9323
Match_columns 289
No_of_seqs 232 out of 1867
Neff 9.6
Searched_HMMs 46136
Date Sat Aug 17 00:25:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9323.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9323hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 100.0 9.9E-33 2.1E-37 236.2 13.3 199 84-284 31-240 (423)
2 KOG4220|consensus 100.0 1.4E-32 2.9E-37 235.0 9.3 194 91-288 33-228 (503)
3 PHA03234 DNA packaging protein 100.0 8.3E-31 1.8E-35 230.7 18.7 189 85-283 29-227 (338)
4 PHA02834 chemokine receptor-li 100.0 1.3E-29 2.9E-34 222.6 17.9 193 89-287 29-223 (323)
5 PHA03235 DNA packaging protein 100.0 4.4E-29 9.6E-34 224.6 19.8 199 85-286 29-237 (409)
6 PHA02638 CC chemokine receptor 100.0 1.7E-28 3.7E-33 221.7 23.0 194 89-285 99-305 (417)
7 PHA03087 G protein-coupled che 100.0 1.4E-27 2.9E-32 211.1 19.3 189 88-285 40-235 (335)
8 PF00001 7tm_1: 7 transmembran 99.9 6.8E-27 1.5E-31 197.2 16.0 178 105-287 1-182 (257)
9 KOG2087|consensus 99.8 1.4E-18 3.1E-23 148.0 12.3 189 93-285 29-224 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 99.7 3.1E-16 6.7E-21 133.2 8.2 118 100-219 2-119 (257)
11 PF10328 7TM_GPCR_Srx: Serpent 99.5 7.2E-13 1.6E-17 113.9 12.8 128 98-225 3-131 (274)
12 PF10324 7TM_GPCR_Srw: Serpent 99.4 4.9E-12 1.1E-16 111.1 13.6 190 98-289 6-228 (318)
13 PF05296 TAS2R: Mammalian tast 99.3 2.4E-10 5.2E-15 99.4 16.9 201 88-289 6-216 (303)
14 PF11710 Git3: G protein-coupl 99.3 3.4E-10 7.3E-15 92.2 15.6 162 117-287 30-201 (201)
15 PF10323 7TM_GPCR_Srv: Serpent 99.0 3.2E-10 6.9E-15 97.8 6.1 180 100-284 6-194 (283)
16 PF05462 Dicty_CAR: Slime mold 99.0 4.4E-08 9.5E-13 84.7 17.3 125 93-225 11-135 (303)
17 PF10317 7TM_GPCR_Srd: Serpent 98.3 1.4E-05 3E-10 69.4 13.4 127 93-225 3-141 (292)
18 PF03402 V1R: Vomeronasal orga 98.3 1E-06 2.2E-11 74.4 5.6 171 118-289 6-183 (265)
19 PF10292 7TM_GPCR_Srab: Serpen 98.3 0.00016 3.4E-09 63.8 19.6 126 92-218 20-152 (324)
20 PF10321 7TM_GPCR_Srt: Serpent 98.3 2.2E-05 4.7E-10 68.4 13.3 188 89-286 33-228 (313)
21 PF10316 7TM_GPCR_Srbc: Serpen 98.2 3.3E-05 7.2E-10 65.9 11.9 116 92-207 9-127 (273)
22 PF00002 7tm_2: 7 transmembran 98.2 8.1E-07 1.8E-11 74.8 1.9 128 94-226 6-133 (242)
23 PF02118 Srg: Srg family chemo 98.1 4.6E-05 9.9E-10 65.4 10.8 184 99-287 8-202 (275)
24 PF10327 7TM_GPCR_Sri: Serpent 97.7 0.0018 3.8E-08 56.5 14.4 193 93-288 13-228 (303)
25 KOG4193|consensus 97.5 0.0012 2.5E-08 62.5 11.3 158 100-278 331-490 (610)
26 PF04789 DUF621: Protein of un 97.4 0.0063 1.4E-07 51.0 13.0 171 105-279 31-212 (305)
27 PF10326 7TM_GPCR_Str: Serpent 97.2 0.00012 2.7E-09 63.9 1.3 104 96-199 6-120 (307)
28 PF02117 7TM_GPCR_Sra: Serpent 97.2 0.048 1E-06 48.1 17.3 112 85-197 17-137 (328)
29 PF10318 7TM_GPCR_Srh: Serpent 96.3 0.23 5E-06 43.1 14.7 131 93-225 8-147 (302)
30 PF02101 Ocular_alb: Ocular al 96.1 0.53 1.1E-05 41.7 15.6 126 93-224 31-173 (405)
31 PF06681 DUF1182: Protein of u 96.1 0.092 2E-06 42.3 10.0 43 154-196 110-152 (226)
32 PF02175 7TM_GPCR_Srb: Serpent 96.1 0.67 1.4E-05 38.4 15.9 45 156-200 80-124 (236)
33 KOG4564|consensus 96.0 1.2 2.6E-05 41.0 18.5 166 102-282 158-336 (473)
34 PF10319 7TM_GPCR_Srj: Serpent 95.9 0.52 1.1E-05 40.9 14.4 108 97-204 13-131 (310)
35 PF02076 STE3: Pheromone A rec 95.1 0.53 1.1E-05 40.6 12.1 118 102-226 4-125 (283)
36 PF03383 Serpentine_r_xa: Caen 95.1 0.023 5E-07 43.8 3.2 60 166-225 49-108 (153)
37 PF01534 Frizzled: Frizzled/Sm 95.0 1.8 3.8E-05 38.2 15.2 69 157-227 90-158 (328)
38 PF10322 7TM_GPCR_Sru: Serpent 94.6 2.8 6E-05 36.6 15.9 119 158-284 100-226 (307)
39 PF03125 Sre: C. elegans Sre G 93.5 5.3 0.00012 35.8 17.6 39 161-199 123-161 (365)
40 PF13853 7tm_4: Olfactory rece 72.8 0.56 1.2E-05 36.0 -1.8 77 207-283 5-87 (144)
41 COG1862 YajC Preprotein transl 65.4 6.1 0.00013 28.0 2.4 28 261-288 11-38 (97)
42 PF02699 YajC: Preprotein tran 57.8 19 0.0004 24.7 3.7 23 266-288 9-31 (82)
43 PF15086 UPF0542: Uncharacteri 56.8 21 0.00047 23.6 3.6 35 252-286 19-54 (74)
44 PF05241 EBP: Emopamil binding 53.6 41 0.00089 27.2 5.7 36 251-286 159-194 (194)
45 COG3771 Predicted membrane pro 47.3 35 0.00075 23.5 3.5 35 255-289 46-80 (97)
46 PF06305 DUF1049: Protein of u 46.1 40 0.00086 21.7 3.8 34 255-288 25-58 (68)
47 TIGR00739 yajC preprotein tran 45.7 18 0.00039 24.9 2.1 25 264-288 7-32 (84)
48 PF01102 Glycophorin_A: Glycop 42.5 15 0.00031 27.4 1.3 22 102-123 76-97 (122)
49 PF15102 TMEM154: TMEM154 prot 40.8 9.5 0.00021 29.2 0.1 8 260-267 59-66 (146)
50 PF09882 DUF2109: Predicted me 38.9 66 0.0014 21.6 3.8 48 99-146 4-51 (78)
51 TIGR02736 cbb3_Q_epsi cytochro 35.5 62 0.0013 20.3 3.0 26 262-287 5-30 (56)
52 PF10325 7TM_GPCR_Srz: Serpent 35.2 2.7E+02 0.0059 23.4 12.2 54 167-220 88-142 (267)
53 PRK05585 yajC preprotein trans 33.6 45 0.00097 24.1 2.6 25 264-288 22-47 (106)
54 PF00558 Vpu: Vpu protein; In 32.7 62 0.0014 22.1 3.0 22 264-285 14-35 (81)
55 PF08114 PMP1_2: ATPase proteo 26.7 1.4E+02 0.003 17.4 3.5 21 268-288 21-41 (43)
56 PF02439 Adeno_E3_CR2: Adenovi 25.8 1E+02 0.0022 17.7 2.6 18 266-283 19-36 (38)
57 COG4736 CcoQ Cbb3-type cytochr 23.7 1.5E+02 0.0033 19.0 3.4 22 266-287 16-37 (60)
58 PF05545 FixQ: Cbb3-type cytoc 23.5 1.6E+02 0.0035 17.6 3.5 21 266-286 16-36 (49)
59 PF11446 DUF2897: Protein of u 21.2 1.1E+02 0.0024 19.2 2.4 22 94-115 7-28 (55)
60 PF11044 TMEMspv1-c74-12: Plec 20.8 2E+02 0.0043 17.1 4.1 21 264-284 13-33 (49)
No 1
>KOG4219|consensus
Probab=100.00 E-value=9.9e-33 Score=236.23 Aligned_cols=199 Identities=24% Similarity=0.428 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHH
Q psy9323 84 LSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDV 163 (289)
Q Consensus 84 ~~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~ 163 (289)
..+...+.+++++++.++++.||++|++++..+|++|+.+|++++|||+||++.+++..++...+...+.|.+|...|++
T Consensus 31 p~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~f 110 (423)
T KOG4219|consen 31 PAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCRF 110 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceeee
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccc------ccc
Q psy9323 164 WNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAH------QLF 237 (289)
Q Consensus 164 ~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~------~~~ 237 (289)
..|+......+|++++++||+|||+||.||++.+ .++|..+.+++++|+.+++++.|..+......... ..+
T Consensus 111 ~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~~d~~~~~~~ 188 (423)
T KOG4219|consen 111 VNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYLYDGESRVVC 188 (423)
T ss_pred ccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeeccCCcceEEE
Confidence 9999999999999999999999999999999854 69999999999999999999987776432211111 001
Q ss_pred ccCCC-Cccccccc----ceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9323 238 RSHNP-NSCIFVVN----RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 284 (289)
Q Consensus 238 ~~~~~-~~c~~~~~----~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~ 284 (289)
....+ ..|....+ ..|.....++.|++|++++..+|.+|.+++|+.+
T Consensus 189 ~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~ 240 (423)
T KOG4219|consen 189 VTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRR 240 (423)
T ss_pred EEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11111 11322222 2388888899999999999999999999998754
No 2
>KOG4220|consensus
Probab=99.98 E-value=1.4e-32 Score=235.05 Aligned_cols=194 Identities=28% Similarity=0.551 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHHHHH
Q psy9323 91 KILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVY 170 (289)
Q Consensus 91 ~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~ 170 (289)
.+++...+.++.++||++|++.+.-+|++++..|+|+++||+|||+.+++.+|....+.+.+.|.+|..+|.++..+.++
T Consensus 33 i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalDYv 112 (503)
T KOG4220|consen 33 IVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALDYV 112 (503)
T ss_pred eehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCcccccc-
Q psy9323 171 FSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVV- 249 (289)
Q Consensus 171 ~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~- 249 (289)
...+|++.+..|++|||..|.+|++|+..+|.+|+..+|.+.|++++++-. |.+..|....+... ..++.|..++
T Consensus 113 aSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~MI~~AW~iSfiLWa-PaIl~WqyivGkrT---v~~~eC~iQFl 188 (503)
T KOG4220|consen 113 ASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGLMIGAAWVLSFVLWA-PAILFWQYIVGKRT---VPDGECYIQFL 188 (503)
T ss_pred hhhhhhhhhheeeeecceeecccccccccccchHHHHHHHHHHHHHHHHHH-HHHHhhHhheeeee---cCCCceEEEee
Confidence 999999999999999999999999999999999999999999999999995 54445543332221 1445676543
Q ss_pred -cceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy9323 250 -NRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLF 288 (289)
Q Consensus 250 -~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~~~ 288 (289)
+....+-..++.|.+|..+|.+.|.+|+|+.++|.|++.
T Consensus 189 snp~iTfGTAiAAFYlPVtiM~~LY~rIyret~kR~k~~~ 228 (503)
T KOG4220|consen 189 SNPAITFGTAIAAFYLPVTIMTILYWRIYRETRKRQKELA 228 (503)
T ss_pred cCceeehhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445556667788999999999999999999999988764
No 3
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.97 E-value=8.3e-31 Score=230.73 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhee--eecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhH
Q psy9323 85 SLLITLKILLMLFIIVSAIFGNLLVIVSV--MRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCD 162 (289)
Q Consensus 85 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~--~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~ 162 (289)
.....+..+++.+++++|++||+++++++ .+++++|+++|++++|||+||++.++. +|+.... ..++|.+|+.+||
T Consensus 29 ~~~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~-lp~~~~~-~~~~w~fG~~lCk 106 (338)
T PHA03234 29 KKAQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLC-VFFLTLN-REALFNFNQAFCQ 106 (338)
T ss_pred HHHHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH-HHHHHHH-HhCCccCchhHHH
Confidence 34566667899999999999999999954 455667899999999999999999874 5655543 3457999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCC
Q psy9323 163 VWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNP 242 (289)
Q Consensus 163 ~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (289)
+..++...+.++|++++++||+|||+||++|.+++. ++++....++++|+.+++.++|+.+........+ ..
T Consensus 107 ~~~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~~--~~~~~~~~i~~~Wi~s~l~~~P~l~~~~~~~~~~------~~ 178 (338)
T PHA03234 107 CVLFIYHASCSYSICMLAIIATIRYKTLHRRKKNDK--KNNHIGRNIGILFLASAMCAIPAALFVKTEGKKG------NY 178 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHeeeechhhhhh--hhhhHHHHHHHHHHHHHHHHhhHhHeeeeeecCC------CC
Confidence 999999999999999999999999999999988643 3344445666679999999988765322111111 11
Q ss_pred Ccccccc--cceehh------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9323 243 NSCIFVV--NRIYCV------VSSCVSFWIPGVIMIYMYYQIYKEADRQ 283 (289)
Q Consensus 243 ~~c~~~~--~~~~~~------~~~~~~~~iPl~ii~~~y~~I~~~l~~~ 283 (289)
..|...+ +..+.. ....++|++|+++|.+||.+|.++++|+
T Consensus 179 ~~C~~~~~~~~~~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~ 227 (338)
T PHA03234 179 GKCNIHISSKKAYDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHAL 227 (338)
T ss_pred CcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2243211 111111 2233457899999999999999999774
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.97 E-value=1.3e-29 Score=222.57 Aligned_cols=193 Identities=19% Similarity=0.377 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHHH
Q psy9323 89 TLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLD 168 (289)
Q Consensus 89 ~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~ 168 (289)
.+..+++.+++++|++||+++++++.++|+ +++.|++++|||++|++. +..+|+.+... .++|.+|+..|++..++.
T Consensus 29 ~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~-~~~w~~g~~~C~~~~~~~ 105 (323)
T PHA02834 29 YFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHND-LNEWIFGEFMCKLVLGVY 105 (323)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHH-cCCcCCcchHHHhHHHHH
Confidence 445688999999999999999998877665 457899999999999986 45788876544 457999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccccccCCCCccc-
Q psy9323 169 VYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHA-HQLFRSHNPNSCI- 246 (289)
Q Consensus 169 ~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~c~- 246 (289)
..+..+|++++++||+|||++|++|.+++. .+++++...++++|+.+++.++|+.+ ++..... +...|... ..+.
T Consensus 106 ~~~~~~Si~tL~~IsidRY~aI~~P~~~~~-~~~~~~~~~i~~iWi~s~l~~~P~~~-~~~~~~~~~~~~C~~~-~~~~~ 182 (323)
T PHA02834 106 FVGFFSNMFFVTLISIDRYILVVNATKIKN-KSISLSVLLSVAAWVCSVILSMPAMV-LYYVDNTDNLKQCIFN-DYHEN 182 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeCchhccC-CccchHHHHHHHHHHHHHHHHhhHHH-HHHhccCCCceEEecc-CCccc
Confidence 999999999999999999999999998654 35677778889999999999987765 3322111 11111110 0000
Q ss_pred ccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9323 247 FVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHML 287 (289)
Q Consensus 247 ~~~~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~~ 287 (289)
......+.....++.|++|+++|++||.+|++++||++++.
T Consensus 183 ~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~~~ 223 (323)
T PHA02834 183 FSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKNKN 223 (323)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 00011122234467899999999999999999998876543
No 5
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.97 E-value=4.4e-29 Score=224.57 Aligned_cols=199 Identities=18% Similarity=0.157 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhheeeec-Cc-ccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhH
Q psy9323 85 SLLITLKILLMLFIIVSAIFGNLLVIVSVMRH-RK-LRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCD 162 (289)
Q Consensus 85 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~-~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~ 162 (289)
.....+..+++.+++++|++||+++++++.++ |+ .++..++|++|||++|++. ++.+|+.+... ...|..|+..|+
T Consensus 29 ~~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~-l~~lP~~i~~~-~~~~~~g~~~Ck 106 (409)
T PHA03235 29 SAARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLT-VFVLPFIMLSN-QGLLSGSVAGCK 106 (409)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHH-HHHHHHHHHhc-CccccCCCCeeh
Confidence 34556777999999999999999999875433 32 2456789999999999987 45788776431 122334578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCC
Q psy9323 163 VWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNP 242 (289)
Q Consensus 163 ~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (289)
+..++...+..+|++++++||+|||++|++|.+++. .+++++..+++++|+.+++.++|+.+..+..............
T Consensus 107 ~~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~-~~~~~a~~ii~~iWi~sll~s~P~~~~~~~~~~~~~~~~~~~~ 185 (409)
T PHA03235 107 FASLLYYASCTVGFATVALIAADRYRVIHQRTRARS-SAYRSTYKILGLTWFASLICSGPAPVYTTVVAHDDVDPEAPGY 185 (409)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccC-cccchhhhhHHHHHHHHHHHHHHHHHHHhhhhccccCcCCCCc
Confidence 999999999999999999999999999999986544 4688899999999999999998876543321111000000012
Q ss_pred Ccccccc--------cceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9323 243 NSCIFVV--------NRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHM 286 (289)
Q Consensus 243 ~~c~~~~--------~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~ 286 (289)
..|.... ...|.+...++.|++|+++|++||.+|++++||++++
T Consensus 186 ~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~~ 237 (409)
T PHA03235 186 ETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASYK 237 (409)
T ss_pred ceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 2343211 1123445566779999999999999999999887654
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.97 E-value=1.7e-28 Score=221.66 Aligned_cols=194 Identities=21% Similarity=0.449 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHHH
Q psy9323 89 TLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLD 168 (289)
Q Consensus 89 ~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~ 168 (289)
.+..+++.+++++|++||+++++++. +|++|+++|++++|||++|++.++ .+|+.+... .++|.+|+..|++..++.
T Consensus 99 ~~l~~~y~lvfvlgliGN~LVl~il~-~k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~-~~~W~fg~~~Ck~~~~l~ 175 (417)
T PHA02638 99 EYIKIFYIIIFILGLFGNAAIIMILF-CKKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE-FDQWIFGDFMCKVISASY 175 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH-hccccccccchhhHHHHH
Confidence 44457788999999999999998765 477899999999999999998765 788887654 468999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccc-c--ccccccCCCCcc
Q psy9323 169 VYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTH-A--HQLFRSHNPNSC 245 (289)
Q Consensus 169 ~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~c 245 (289)
..+.+++++++++|++|||+||+||.++++.+++++....++++|+++++.++|+.+....... . ...........|
T Consensus 176 ~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~~iW~~s~l~slP~~~~~~~~~~~~~~~~~~~~~~~~~C 255 (417)
T PHA02638 176 YIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSPAYFIFEASNIIFSAQDSNETISNYQC 255 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHhHHHHHHHHHHHHHHHHhhccccccccccCCCCccCCee
Confidence 9999999999999999999999999998887788888889999999999999988764221110 0 000000001234
Q ss_pred cccc----------cceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9323 246 IFVV----------NRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEH 285 (289)
Q Consensus 246 ~~~~----------~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~ 285 (289)
.... ...+.+...++++++|+++|++||.+|+++++|.++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~~ 305 (417)
T PHA02638 256 TLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLKK 305 (417)
T ss_pred eeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3211 112233445678899999999999999999987554
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.96 E-value=1.4e-27 Score=211.12 Aligned_cols=189 Identities=23% Similarity=0.386 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHH
Q psy9323 88 ITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSL 167 (289)
Q Consensus 88 ~~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~ 167 (289)
..+...++.+++++|++||+++++++.++ ++|++.|+++.|||++|++.++ ..|........++|.+|+..|++..++
T Consensus 40 ~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~~~~~~~~~C~~~~~~ 117 (335)
T PHA03087 40 STILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILFQWSFGEFACKIVSGL 117 (335)
T ss_pred hhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 34455788889999999999999998887 8899999999999999998776 467666566667899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCcccc
Q psy9323 168 DVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIF 247 (289)
Q Consensus 168 ~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 247 (289)
......+|++++++|++|||++|++|.+|++..+++++..++.++|+++++.+.|+........+. ....|..
T Consensus 118 ~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~~~~~~iWl~~~~~~~p~~~~~~~~~~~-------~~~~C~~ 190 (335)
T PHA03087 118 YYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLVIWIISIIETTPILFVYTTKKDH-------ETLICCM 190 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhHHHHHHHHHHHHHHhccHhheeeeeccC-------CCceEEe
Confidence 999999999999999999999999999998888999999999999999999888776532221111 1122321
Q ss_pred ccc-------ceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9323 248 VVN-------RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEH 285 (289)
Q Consensus 248 ~~~-------~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~ 285 (289)
.+. ..+.+....+.+++|+++++++|.+|.+++||+++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~~ 235 (335)
T PHA03087 191 FYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGINK 235 (335)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111 11222345667899999999999999999988764
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.95 E-value=6.8e-27 Score=197.20 Aligned_cols=178 Identities=32% Similarity=0.648 Sum_probs=152.8
Q ss_pred HhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9323 105 GNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISV 184 (289)
Q Consensus 105 gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~ 184 (289)
||+++++++.++|++|++.+++++|||++|++.++...|........++|..++..|++..++..+...+|.++++++++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999888888877777889999999999999999999999999999999
Q ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCccccccc----ceehhhhhhH
Q psy9323 185 DRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVN----RIYCVVSSCV 260 (289)
Q Consensus 185 dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~~~~~ 260 (289)
|||++|++|.+|++..+++++...++++|+++++.++|+.+..+.....+. ....|..... ..+.....++
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~-----~~~~C~~~~~~~~~~~~~~~~~~~ 155 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRARIIIILIWIISFLISLPPLFFSWVYFVSDG-----SQSFCFIDFSSSSSQIYFIYFFIV 155 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEESTC-----CCEEEEESCSSSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999988764232222211 0334554332 3467777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9323 261 SFWIPGVIMIYMYYQIYKEADRQEHML 287 (289)
Q Consensus 261 ~~~iPl~ii~~~y~~I~~~l~~~~~~~ 287 (289)
.+++|+++++++|.+|++++||++++.
T Consensus 156 ~~~~p~~~~~~~~~~i~~~~~~~~~~~ 182 (257)
T PF00001_consen 156 FFILPLIIILICYIRILRKLRRQRKRI 182 (257)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred ccccceeeeeeeccccccccccccccc
Confidence 999999999999999999999988864
No 9
>KOG2087|consensus
Probab=99.78 E-value=1.4e-18 Score=147.96 Aligned_cols=189 Identities=22% Similarity=0.285 Sum_probs=145.7
Q ss_pred HHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHh-------cccccchhhhHHHH
Q psy9323 93 LLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIF-------NRWLFGYFMCDVWN 165 (289)
Q Consensus 93 ~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~-------~~~~~~~~~C~~~~ 165 (289)
+...++.+++++||.+|+......|...++..+++.|||.+|+++++-...+....... ..|..+...|++.+
T Consensus 29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aG 108 (363)
T KOG2087|consen 29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAG 108 (363)
T ss_pred ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHH
Confidence 46677888899999999999888887778999999999999999988544444332221 23444668999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCcc
Q psy9323 166 SLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSC 245 (289)
Q Consensus 166 ~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c 245 (289)
|+..++...|++.++.+++||++.|++|+|.++....|....+.+..|+.+++.++.|++ +...+.....|..-+...+
T Consensus 109 flavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~-g~s~Y~~~~vClPL~~~~~ 187 (363)
T KOG2087|consen 109 FLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLF-GISSYGASSVCLPLHIEEP 187 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhcccc-CCCCCcccceeeecccCCc
Confidence 999999999999999999999999999999777666666899999999999999999997 4433333322222222222
Q ss_pred cccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9323 246 IFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEH 285 (289)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~ 285 (289)
.... |....++..-.+-+++|.++|++++..++|...
T Consensus 188 ~s~g---~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~ 224 (363)
T KOG2087|consen 188 LSTG---YYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDL 224 (363)
T ss_pred cchh---HHHHHHHHHHHHHHHHHHHHhhhhheeeecCCC
Confidence 1111 555666677788999999999999999987543
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=99.65 E-value=3.1e-16 Score=133.24 Aligned_cols=118 Identities=26% Similarity=0.445 Sum_probs=97.7
Q ss_pred HHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHH
Q psy9323 100 VSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHL 179 (289)
Q Consensus 100 ~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l 179 (289)
++|++||..++.++.++|++|++.++++..+|++|++.+...+|...... +........|-...+...++...+...+
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~--~~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLF--RDHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHH--hheeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999888777766332 2334567799999999999999999999
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Q psy9323 180 CCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALV 219 (289)
Q Consensus 180 ~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~ 219 (289)
.+|++||++||+.|++|++..+++..........+.+...
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~y~~~~~~~~~~~s~~~ 119 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRKYLIILLIFPVIYSIFF 119 (257)
T ss_pred HHHHhhheeeEeehhhhhhcccccchhhHhHHHHHHHHHH
Confidence 9999999999999999999888775544444444444443
No 11
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.47 E-value=7.2e-13 Score=113.86 Aligned_cols=128 Identities=18% Similarity=0.362 Sum_probs=105.6
Q ss_pred HHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhH-HHHHHHHHHHHHHH
Q psy9323 98 IIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCD-VWNSLDVYFSSASI 176 (289)
Q Consensus 98 i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~-~~~~~~~~~~~~S~ 176 (289)
+.++|++.|.++++.+.|.+++|++.+.+..+.|++|.+.++..+-........+.....+.... +.+.+.......+.
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999998855544444444443333333334 44778888888899
Q ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9323 177 LHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 225 (289)
Q Consensus 177 ~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~ 225 (289)
++-.+||++|+.||..|.+|++..+.+....++.+.|++++....++.+
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~i~~~~~~~~~~~~~~~~ 131 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIILIAFIWLLSIIISTILYF 131 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehhhhHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999977766654
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=99.40 E-value=4.9e-12 Score=111.09 Aligned_cols=190 Identities=17% Similarity=0.234 Sum_probs=129.5
Q ss_pred HHHHHHHHhHhhhheeeecCcccc-hhHHHHHHHHHHhHHHHHhhhhHHHHHHHhc---------ccccchhhhHHHHHH
Q psy9323 98 IIVSAIFGNLLVIVSVMRHRKLRV-ITNYFVVSLAFADMLVAFGAMGFNLSVEIFN---------RWLFGYFMCDVWNSL 167 (289)
Q Consensus 98 i~~~gl~gN~lvl~~~~~~~~~~~-~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~---------~~~~~~~~C~~~~~~ 167 (289)
+.++|+++|.+-+.++ .+|.+|+ +.|.++..+|++|++..+...+......... ..........+...+
T Consensus 6 ~~~~g~~~N~~h~~VL-trk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l 84 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVL-TRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESL 84 (318)
T ss_pred EeHHHHHHHHHHhhhc-CChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHH
Confidence 4678999999999886 4566776 8999999999999999887777666443322 111222344556678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc-----ccccccC
Q psy9323 168 DVYFSSASILHLCCISVDRYYAIVQPLDY--HLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHA-----HQLFRSH 240 (289)
Q Consensus 168 ~~~~~~~S~~~l~~is~dRy~aI~~P~~~--~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~-----~~~~~~~ 240 (289)
...+...|.|..++||+.|++++.+|.+. ++..+++.+.+.+.++++++.+.+.+..+........ +.. |..
T Consensus 85 ~~~~~~~S~WL~V~mA~iR~l~i~~p~~~~~~~l~~~k~~~~~i~~v~~~s~~~~~~~~~~~~i~~~~~~~~p~~~-C~~ 163 (318)
T PF10324_consen 85 SDIFRRISIWLGVLMALIRYLSIKFPMSSRFQKLSKPKFAIIVILIVFIISFLFSIPYFFRYKIVEVSDPWVPPPN-CSG 163 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeeeeehHHHHHHHHHHHHHhhceEEEEeccccccCCCc-eee
Confidence 88889999999999999999999999874 3455778888888889999988887655421111111 111 111
Q ss_pred CC-----Ccccccc-------c----ceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy9323 241 NP-----NSCIFVV-------N----RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR 289 (289)
Q Consensus 241 ~~-----~~c~~~~-------~----~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~~~r 289 (289)
.+ +...... + +.+.+...++.-++|.++..+....+.+++||.+|++++
T Consensus 164 ~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~ 228 (318)
T PF10324_consen 164 FPENYTFPRYMLNISELFTENDCLFFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKK 228 (318)
T ss_pred ccccccccccchhhhhhhhhhHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhc
Confidence 11 0000000 0 112222333447899999999999999999988887764
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=99.28 E-value=2.4e-10 Score=99.36 Aligned_cols=201 Identities=12% Similarity=0.058 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhheeee---cCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHH
Q psy9323 88 ITLKILLMLFIIVSAIFGNLLVIVSVMR---HRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVW 164 (289)
Q Consensus 88 ~~~~~~~~~~i~~~gl~gN~lvl~~~~~---~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~ 164 (289)
..+..++..+..++|++||+++..+-++ +++.-+|.+..+.+||++.++.....................+..++..
T Consensus 6 ~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (303)
T PF05296_consen 6 EIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFPNIYFSENVYKII 85 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhHHHHH
Confidence 3445678888999999999999888754 3333469999999999999998775554444444444555567799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccc-cccccc
Q psy9323 165 NSLDVYFSSASILHLCCISVDRYYAIVQPLDY----HLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHA-HQLFRS 239 (289)
Q Consensus 165 ~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~----~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~-~~~~~~ 239 (289)
.++..+....|.|..+.+++--+..|+..-+. -+++=.+...+.+.+.++++++...+... .+..... +.....
T Consensus 86 ~~~~~f~~~~s~W~tt~LsvfYcvKI~~fs~~~Fl~LK~rI~~~v~~lLl~s~l~s~~~~~~~~~-~~~~~~~~~~~~~~ 164 (303)
T PF05296_consen 86 DFLWMFSNSSSLWFTTWLSVFYCVKIANFSHPFFLWLKRRISKVVPWLLLGSLLISFLNLLSIPL-FIDNHINNNNTNNS 164 (303)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHheeeecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-heeeeeccccccCC
Confidence 99999999999999999999999999886542 12222222334556666666632221111 2221111 111000
Q ss_pred CCCCc-cccc-ccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy9323 240 HNPNS-CIFV-VNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR 289 (289)
Q Consensus 240 ~~~~~-c~~~-~~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~~~r 289 (289)
.+... .... .+..+......++.++|+++++.+...+...++||.||+++
T Consensus 165 ~N~t~~~~~~~~~~~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~ 216 (303)
T PF05296_consen 165 RNSTSNFQESKSSYFYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQK 216 (303)
T ss_pred CcceEEeecchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 01110 1111 11222333344888999999999999999999999999874
No 14
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=99.26 E-value=3.4e-10 Score=92.24 Aligned_cols=162 Identities=15% Similarity=0.113 Sum_probs=107.9
Q ss_pred CcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-
Q psy9323 117 RKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLD- 195 (289)
Q Consensus 117 ~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~- 195 (289)
+++|.-.+-++.||.++|++.++..+.........++-..++..|..++++..++...+-+...+||++-|+.|.+|-.
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~aqGf~~q~g~~~sd~~ilaIAihT~l~v~~~~~~ 109 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQAQGFFLQVGDEASDLWILAIAIHTFLIVFRPNWK 109 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4446677779999999999999876665565555555555779999999999999999999999999999999999921
Q ss_pred ---ccc-----cchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCcccccc-cceehhhhhhHHHHHHH
Q psy9323 196 ---YHL-----IMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVV-NRIYCVVSSCVSFWIPG 266 (289)
Q Consensus 196 ---~~~-----~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~~~~~~~~~~~~iPl 266 (289)
.+. ...+..+.....++|++...++... .+...+. ....+|.... ...+.+...-+--++-.
T Consensus 110 ~~~~~~~~~gl~~~~~~v~~~~~~~~~~~~~la~i~--~~~~~Y~-------~~g~WCWi~~~~~~~Rl~l~y~~~~~~~ 180 (201)
T PF11710_consen 110 RKRSKNVEGGLYPYRYWVWVIWILVPLLLASLAFIG--LGGPGYG-------PAGAWCWIPSRYEWYRLWLHYIWRFIII 180 (201)
T ss_pred cccccccccceEEeeeeeehHHHHHHHHHHHHHHhc--cccCccc-------ccCcEEEECCCcHHHHHHHHHHHHHHHH
Confidence 110 1112222233334454444333211 0111111 1345677533 33455555555556678
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q psy9323 267 VIMIYMYYQIYKEADRQEHML 287 (289)
Q Consensus 267 ~ii~~~y~~I~~~l~~~~~~~ 287 (289)
+.++..|..|+..+||+.|+.
T Consensus 181 ~~~i~iY~~if~~lrr~~~~~ 201 (201)
T PF11710_consen 181 FAIIIIYIAIFFYLRRRIRRI 201 (201)
T ss_pred HHHHHHHHHHHHHHhhhhccC
Confidence 889999999999999998763
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=99.04 E-value=3.2e-10 Score=97.75 Aligned_cols=180 Identities=14% Similarity=0.207 Sum_probs=115.1
Q ss_pred HHHHHHhHhhhheeeecCc----ccchhHHHHHHHHHHhHHHHHhhhhHHHHHHH---hc-ccccchhhhHHHHHHHHHH
Q psy9323 100 VSAIFGNLLVIVSVMRHRK----LRVITNYFVVSLAFADMLVAFGAMGFNLSVEI---FN-RWLFGYFMCDVWNSLDVYF 171 (289)
Q Consensus 100 ~~gl~gN~lvl~~~~~~~~----~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~---~~-~~~~~~~~C~~~~~~~~~~ 171 (289)
++.++-...+++++.+.|+ .+++.+-++.+-+++|++..+........... .+ ....++..-++.....+..
T Consensus 6 ~~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~y~~ 85 (283)
T PF10323_consen 6 IVTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYFLLQRFRAYGFFNDFYFSYQTYYAAIYYNIAYYF 85 (283)
T ss_pred eehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4456666777776666544 45899999999999999977644332222111 11 1122333355666667777
Q ss_pred HHHHHHHHHHHHHHHHHHhhccc-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCccccccc
Q psy9323 172 SSASILHLCCISVDRYYAIVQPL-DYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVN 250 (289)
Q Consensus 172 ~~~S~~~l~~is~dRy~aI~~P~-~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 250 (289)
........+++|++||.||++|. ++++..++.+...++++-|+.+++.++|-..-.....+..+.. ...-+ ...
T Consensus 86 ~~~~~~gi~lls~nR~~ai~~P~~~~~~~~~~~~~~~i~~i~wi~p~li~~~~~~~~~~~f~~~~~~----~~~~d-~~~ 160 (283)
T PF10323_consen 86 LYIQCIGIVLLSLNRYLAICFPTSRHTKFWQPAKIWIIILIQWIPPLLISLPFFFDTDFYFDNEENM----SLFVD-PEF 160 (283)
T ss_pred HHHHHHhHHHHHHhhhheEEeecHHHhhhccccchhheeeeeehhhhhheeeeeccCceeeecccce----eeecC-HHH
Confidence 78888999999999999999999 7888889999999999999999999965332111111111110 00000 011
Q ss_pred ceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9323 251 RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 284 (289)
Q Consensus 251 ~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~ 284 (289)
.........+...+-.+..+++|+.++..+||+.
T Consensus 161 ~~~~~~~~~~~~~~~cv~~iv~Y~~i~~~iRk~~ 194 (283)
T PF10323_consen 161 IQRNFLIAFIFVSVTCVICIVCYGIIFIFIRKRN 194 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1122233344455667788899999999999553
No 16
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.99 E-value=4.4e-08 Score=84.65 Aligned_cols=125 Identities=22% Similarity=0.354 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHHHHHHH
Q psy9323 93 LLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFS 172 (289)
Q Consensus 93 ~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 172 (289)
.+..+..+++++|-++++..+++.|++|++.+-++.-++++|++..+..+.. ........++..|.+++++..++.
T Consensus 11 ~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~----~~~~~~~~~s~lC~~Qafliq~f~ 86 (303)
T PF05462_consen 11 AIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIM----TLSPSAGENSFLCQFQAFLIQFFM 86 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH----HhcccCCCCCcchhhHhHHHHHhh
Confidence 5666678889999999999999999999999999999999999977643322 122333445789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9323 173 SASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 225 (289)
Q Consensus 173 ~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~ 225 (289)
.++.+-.++||++=|+.+++... + .+|.-....+++|.++++.++.++.
T Consensus 87 ~as~lWt~~iA~nly~~~~~~~~--~--~~k~e~~Y~l~~wGiPli~a~i~l~ 135 (303)
T PF05462_consen 87 LASFLWTLCIAFNLYLTFVKRYD--E--LEKLEKYYHLVCWGIPLIPAVIPLI 135 (303)
T ss_pred HHHHHHHHHHHHHhhheeEEcCc--c--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987533 1 3555567889999999999887764
No 17
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=98.33 E-value=1.4e-05 Score=69.38 Aligned_cols=127 Identities=17% Similarity=0.244 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHhHhhhheeeecC-cccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhccc-----------ccchhh
Q psy9323 93 LLMLFIIVSAIFGNLLVIVSVMRHR-KLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRW-----------LFGYFM 160 (289)
Q Consensus 93 ~~~~~i~~~gl~gN~lvl~~~~~~~-~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~-----------~~~~~~ 160 (289)
++..+.+.+|++.|.+.++.+.++. +.-+...+++.|-|+.|++.++...-... .....++ .+|+..
T Consensus 3 i~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~~~q~-R~i~~~~~~~~~~~GpC~~~~~~~ 81 (292)
T PF10317_consen 3 IYHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAFLTQP-RIIPNGTSIAVISYGPCRYFGPWF 81 (292)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hccCCCCcEEEEeeecceecCcHH
Confidence 3567788899999999998876653 33457889999999999998874333322 2222111 247788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9323 161 CDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 225 (289)
Q Consensus 161 C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~ 225 (289)
|.....+...+...+.+.+.+--..||..+.++.. ++++....+.+.+..++...+...+
T Consensus 82 C~~~y~~~~~~~~~s~~~i~~sf~yRy~iL~~~~~-----~~~~~i~~~~l~~~p~~~~~i~~~~ 141 (292)
T PF10317_consen 82 CFFCYHIMLHFSIHSGWSIILSFYYRYYILRNPSP-----SRKRIIFICILIYIPSFSMLIFFFF 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----chhHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988888888999999999999999999998743 5667777777777777777654443
No 18
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=98.31 E-value=1e-06 Score=74.40 Aligned_cols=171 Identities=13% Similarity=0.039 Sum_probs=105.5
Q ss_pred cccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cc
Q psy9323 118 KLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPL-DY 196 (289)
Q Consensus 118 ~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~-~~ 196 (289)
+..+|.|..+.+||+++++..+.-....... ..+...+++..||+..+++.++-..|+.+.+++++-.-+.|.-.- ++
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~-~~~~~~~~d~gCK~v~Y~~RV~RglSictTCLLSvfQAItISP~~s~w 84 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMA-FFGWKFFDDIGCKIVFYIYRVARGLSICTTCLLSVFQAITISPSNSRW 84 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHH-HhhcccCCCceeeeeeeehHHhchhhHHhhhHHHHHhhEEEecCCchh
Confidence 3367899999999999999877533323322 222224689999999999999999999999999994444443221 11
Q ss_pred --cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCccccccccee----hhhhhhHHHHHHHHHHH
Q psy9323 197 --HLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIY----CVVSSCVSFWIPGVIMI 270 (289)
Q Consensus 197 --~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~----~~~~~~~~~~iPl~ii~ 270 (289)
-+.+.++.....+...|++-++....-.+........+........+.|........ ......+-=++.+.+|.
T Consensus 85 ~~lK~k~pk~i~~~~~~~Wilnlli~~~~~~~~~~~~n~t~~~~~~~~~yCs~~~~~~~~~~~~~~~~~~~D~~fvgLM~ 164 (265)
T PF03402_consen 85 AELKVKAPKYIGPSCLFCWILNLLININVLVYIIATPNSTNNNFTYSLGYCSSVPISYIVSSLFATLLSFRDVLFVGLMI 164 (265)
T ss_pred hhhhhhcCCccccHHHHHHHHHHhhhcceeEEEEecCccccCceeecCCeEEEEecchhhhhhhhhHHHhhHHHHHHHHH
Confidence 122345556677888899888877432221111111111111122355653221111 11122233356678899
Q ss_pred HHHHHHHHHHHhhhhhhcC
Q psy9323 271 YMYYQIYKEADRQEHMLFR 289 (289)
Q Consensus 271 ~~y~~I~~~l~~~~~~~~r 289 (289)
..-+.+...+.||+||.++
T Consensus 165 ~aSgyMV~~L~RH~q~Vqh 183 (265)
T PF03402_consen 165 WASGYMVFLLYRHHQQVQH 183 (265)
T ss_pred hhhhhheeeeeeccccccc
Confidence 9999999999999988753
No 19
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=98.31 E-value=0.00016 Score=63.78 Aligned_cols=126 Identities=10% Similarity=0.093 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHH---HHHHhc----ccccchhhhHHH
Q psy9323 92 ILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNL---SVEIFN----RWLFGYFMCDVW 164 (289)
Q Consensus 92 ~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~---~~~~~~----~~~~~~~~C~~~ 164 (289)
..+-.++.++|++.++..++.+.+++..|.-.-+++....++.++.++....... ...... +.......|...
T Consensus 20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~l 99 (324)
T PF10292_consen 20 LIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFIL 99 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHH
Confidence 3567778888999999888887777778888888888888998888764333332 121111 223456789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Q psy9323 165 NSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPAL 218 (289)
Q Consensus 165 ~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~ 218 (289)
.....++......+..++++||++|-++..+|.+. ++.-......+.|+++..
T Consensus 100 R~~~~~~~~~~~~t~v~l~IER~iAT~~~~~YE~~-~~~~Gi~l~~~qi~is~~ 152 (324)
T PF10292_consen 100 RIPYNFGLFLVSFTTVSLVIERTIATFFSKSYEKS-GKWLGILLAFFQILISLL 152 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCC-CccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888764 333223334444444444
No 20
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.27 E-value=2.2e-05 Score=68.40 Aligned_cols=188 Identities=12% Similarity=0.147 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHH-----
Q psy9323 89 TLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDV----- 163 (289)
Q Consensus 89 ~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~----- 163 (289)
...+..+.+..++-.+.....++++.+++..|.+.+-++.-|++.|++.....-......... |...|..
T Consensus 33 p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~l~i~-----G~vfC~~P~~~~ 107 (313)
T PF10321_consen 33 PILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGILAIF-----GAVFCSYPRFIY 107 (313)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhHHHhc-----CccccCCchHhh
Confidence 444566777777777788888888888777788999999999999999876433322222222 3334443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHH--HHHHHHHHHHHHHHHHHhhhcccccccccccC
Q psy9323 164 -WNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIM--LCIVWLSPALVSFLPIFLGWYTTHAHQLFRSH 240 (289)
Q Consensus 164 -~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~--i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~ 240 (289)
.+.+....-.++...-..++++|..-+..|........+++.... +..+|.+-..+..+|..+....... ..
T Consensus 108 i~G~~~~~~W~~~c~~~i~LainR~~~l~~~~~~~~~F~g~~~~~~l~~~~iY~~y~~~fT~pv~Fns~~~sw-----~f 182 (313)
T PF10321_consen 108 IMGCIALGSWCGSCIICILLAINRCCELNFPFKLKFLFEGKRTYIVLFLPIIYGFYFSFFTPPVLFNSEYMSW-----FF 182 (313)
T ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHhcchhhHHhhcCceEEeeehhHHHHHHHHHHHcCcccCCCCcceE-----ec
Confidence 344444455677788889999999999999876666565664433 3333333333333555431110000 00
Q ss_pred CCCcccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9323 241 NPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHM 286 (289)
Q Consensus 241 ~~~~c~~~~~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~ 286 (289)
+|..-.....+.|.-....+.-++-.+.+..+|..+...++|++|+
T Consensus 183 DP~i~~g~~~~~Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~ 228 (313)
T PF10321_consen 183 DPMIFEGKSPELYSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKY 228 (313)
T ss_pred CccccCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0100000111222222222222333566777788777777766443
No 21
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=98.17 E-value=3.3e-05 Score=65.85 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhc--cccc-chhhhHHHHHHH
Q psy9323 92 ILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFN--RWLF-GYFMCDVWNSLD 168 (289)
Q Consensus 92 ~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~--~~~~-~~~~C~~~~~~~ 168 (289)
..+-.+...+....|...++.+.+.|+.|++--.+.--..+.|.+.++...+......... .... ....=-..+...
T Consensus 9 ~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~p~ 88 (273)
T PF10316_consen 9 SIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFSLFPEFLDYKNLIFYIGWPS 88 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhccccEEeehhhhH
Confidence 3566677778889999999988877773444444555678999999987666555443321 1111 111111122333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHH
Q psy9323 169 VYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLI 207 (289)
Q Consensus 169 ~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~ 207 (289)
...+.........||+||..|+..|..|++.+++-....
T Consensus 89 ~~~~~iR~~l~~~Ia~dR~~A~~fPI~y~~~r~k~~~~~ 127 (273)
T PF10316_consen 89 SNLGSIRSILALIIALDRVFAVYFPIFYHNYRKKIPNFI 127 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCccccHHH
Confidence 444566778899999999999999999888755444333
No 22
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=98.16 E-value=8.1e-07 Score=74.83 Aligned_cols=128 Identities=20% Similarity=0.242 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccchhhhHHHHHHHHHHHH
Q psy9323 94 LMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSS 173 (289)
Q Consensus 94 ~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~ 173 (289)
+..+-..+++++-.+.+..+...|++|+..+....||++++++..+..+.. ......+.....+..|+..+.+...+..
T Consensus 6 i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~-~~~~~~~~~~~~~~~C~~~a~~~hy~~l 84 (242)
T PF00002_consen 6 ISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIG-ISQTFSPISTTNHCLCRAIAILLHYFFL 84 (242)
T ss_dssp HHHHHHH-------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHhee-hhhccccccccccccchhhhhHhHHHHH
Confidence 334444455666556666666668888878888999999998876643222 1111111111122359999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy9323 174 ASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFL 226 (289)
Q Consensus 174 ~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~ 226 (289)
++..-+.+.++|-|..++++.. ..+++........|.++.+........
T Consensus 85 a~f~Wm~~~~~~l~~~~~~~~~----~~~~~~~~~~~~gwg~P~~iv~i~~~~ 133 (242)
T PF00002_consen 85 ASFFWMLVEAFYLYRLLVKVFN----SSRRRFWWYYLIGWGIPALIVVISVAV 133 (242)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHhheeEEEeec----ccchhhheeeeeeecCcceeeeeeeee
Confidence 9999999999999999988833 135566677888999988888665543
No 23
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=98.06 E-value=4.6e-05 Score=65.41 Aligned_cols=184 Identities=15% Similarity=0.175 Sum_probs=102.8
Q ss_pred HHHHHHHhHhhhheeeecCc--c-cchhHHHHHHHHHHhHHHHHhhhhH-HHHHHHhc------c-cccchhhhHHHHHH
Q psy9323 99 IVSAIFGNLLVIVSVMRHRK--L-RVITNYFVVSLAFADMLVAFGAMGF-NLSVEIFN------R-WLFGYFMCDVWNSL 167 (289)
Q Consensus 99 ~~~gl~gN~lvl~~~~~~~~--~-~~~~~~ll~nLaiaDll~~~~~~p~-~~~~~~~~------~-~~~~~~~C~~~~~~ 167 (289)
++.+++.+..+++++.++|+ . +++.+.+..--++.+++.-+...+. -+.....+ . ........++..++
T Consensus 8 gi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~l 87 (275)
T PF02118_consen 8 GIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYFL 87 (275)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHHH
Confidence 44566777778888777766 3 6778777777777777764433222 11111000 0 11234567777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCcccc
Q psy9323 168 DVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIF 247 (289)
Q Consensus 168 ~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 247 (289)
......+.......|+++|+-++.+|.++.+..++. ....++++.++++... .+.+........+.. ........
T Consensus 88 ~~~~~~~Q~~~~~~is~nR~t~v~~p~~~~~~W~~~-~~~~i~~i~~~p~~~~-~~~~~~~~~~~~~~~---~~~~~~~~ 162 (275)
T PF02118_consen 88 QYYFAYVQYLSTILISLNRFTSVLFPIRYEKFWKRY-YWIIIIIIFLLPFSFT-WNIFISPTYVVYDNG---GFSYSYND 162 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHhh-hhhheeeeeehhHHHH-HHHHccccEEEEECC---ceEEEEEe
Confidence 888889999999999999999999999988766543 3445555555555443 333322111111100 00000000
Q ss_pred cccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9323 248 VVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHML 287 (289)
Q Consensus 248 ~~~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~~ 287 (289)
............+.+++-+++.+.++....+++++.++|.
T Consensus 163 ~~~~~~~~~~~~~~~i~~~ii~i~~~~~~~~~l~~~~~~~ 202 (275)
T PF02118_consen 163 TVSWASLSIFSLIYFIIIIIITIITNIITYRRLRKLSKRI 202 (275)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 0111111122234444555566677777778777665444
No 24
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=97.69 E-value=0.0018 Score=56.51 Aligned_cols=193 Identities=16% Similarity=0.172 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHhHhhhheeeec-CcccchhHHHH---HHHHHHhHHHHHhhhhHHHHHHHhcccccc------hhhhH
Q psy9323 93 LLMLFIIVSAIFGNLLVIVSVMRH-RKLRVITNYFV---VSLAFADMLVAFGAMGFNLSVEIFNRWLFG------YFMCD 162 (289)
Q Consensus 93 ~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~~ll---~nLaiaDll~~~~~~p~~~~~~~~~~~~~~------~~~C~ 162 (289)
..+-++.+++++.|.+.++.+..+ +++.+-.++++ +...+.|+-.+....|..+.....+ +-.| +..+.
T Consensus 13 ~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag-y~~G~l~~~f~i~~h 91 (303)
T PF10327_consen 13 NYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG-YCVGFLARYFGISSH 91 (303)
T ss_pred HHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE-EEEeehhhcCCCchH
Confidence 577788999999999999877654 44455333332 2456789888887777766543333 2222 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCC
Q psy9323 163 VWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNP 242 (289)
Q Consensus 163 ~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (289)
....+..+......-.++.--+-|..+|.+..+.++ .++..................+.-...+..+.+..+...+..|
T Consensus 92 ~~~~i~~~l~~~q~~~L~~CF~~KHQaIa~i~~~~~-l~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~eeq~~yI~~nyP 170 (303)
T PF10327_consen 92 YLMTIWIFLFIFQIESLVICFLRKHQAIARILSKHV-LPKWFYIFFYFFCILFPFFIFICFYFSGMSREEQMEYIRENYP 170 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc-CcHHHHHHHhhHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC
Confidence 333444444555555666667889999999887443 2333333334444444444332222111122211112222222
Q ss_pred Ccccc-----------ccccee--hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy9323 243 NSCIF-----------VVNRIY--CVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLF 288 (289)
Q Consensus 243 ~~c~~-----------~~~~~~--~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~~~ 288 (289)
+ |.. +.+.++ .......+...-..+..+++..++|.+++.+++++
T Consensus 171 ~-~~~~F~~l~nf~iY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS 228 (303)
T PF10327_consen 171 E-YLSWFSSLPNFAIYDFNPWFIFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKIS 228 (303)
T ss_pred c-hhHHHhcCCCEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2 221 111111 22233344556667788899999999988887764
No 25
>KOG4193|consensus
Probab=97.50 E-value=0.0012 Score=62.53 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=97.2
Q ss_pred HHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcccccch-h-hhHHHHHHHHHHHHHHHH
Q psy9323 100 VSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGY-F-MCDVWNSLDVYFSSASIL 177 (289)
Q Consensus 100 ~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~~~~~-~-~C~~~~~~~~~~~~~S~~ 177 (289)
++++++=.+.++++.-.|++++..+....||+++=++.-+ ..+.+.|.-+. . .|+..+++.+++..+...
T Consensus 331 ~iSlvcL~lti~ty~~~~~l~~~~~~i~~~l~~~L~l~~l--------~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~ 402 (610)
T KOG4193|consen 331 IISLVCLLLTIATYLLFRKLQNDRTKIHINLCLCLFLAEL--------LFLLGIDRTSTSVVLCIAAAILLHFFFLAAFF 402 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--------HHhcccccccCcccccHHHHHHHHHHHHHHHH
Confidence 3344444444455555566666558888888888222111 12223333322 2 799999999999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCcccccccceehhhh
Q psy9323 178 HLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVVNRIYCVVS 257 (289)
Q Consensus 178 ~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 257 (289)
-+.+++++=|+.++.-.+ ...+++........|..++++......... ..+. ....+..|+.+.+..+.+.
T Consensus 403 Wm~leg~hl~~~~v~vf~---~~~~~~~l~~~~~gwg~Pavvv~Isa~~~~-~~~~----~~~~~~~CWl~~~~~~~~~- 473 (610)
T KOG4193|consen 403 WMLLEGFHLYLLLVEVFR---SRPRRRKLLYSLYGWGVPAVVVGVSALVDP-DLEG----QYGTPRVCWLDTQNGFIWS- 473 (610)
T ss_pred HHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHhhhhHHHHhheeEEec-cCcc----ccccCCceEEecCCceEEE-
Confidence 999999999996666543 224555556656999988887754443211 1111 1123445887666555554
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy9323 258 SCVSFWIPGVIMIYMYYQIYK 278 (289)
Q Consensus 258 ~~~~~~iPl~ii~~~y~~I~~ 278 (289)
|+-|+.+++.+|+-++.
T Consensus 474 ----F~GPv~~ii~~Ni~~Fv 490 (610)
T KOG4193|consen 474 ----FLGPVTLIILVNIVMFV 490 (610)
T ss_pred ----EehHHHHHHHHHHHHHH
Confidence 66788888777755433
No 26
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=97.40 E-value=0.0063 Score=51.04 Aligned_cols=171 Identities=14% Similarity=0.178 Sum_probs=98.7
Q ss_pred HhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhh----hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHH
Q psy9323 105 GNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGA----MGFNLSVEIFNRWLFGYFMCDVWNSLDVYFSSASILHLC 180 (289)
Q Consensus 105 gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~----~p~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~S~~~l~ 180 (289)
|-.+++.++...+-.+-+.-+++..|.++-++..... .|..+......+.. .+..-.+..+...++.++-.+.=.
T Consensus 31 ~~Flv~~i~lW~~Fk~m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~-~s~~f~~~Sy~idf~h~siLfsNl 109 (305)
T PF04789_consen 31 GAFLVLSIILWSHFKPMKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV-QSELFIFMSYLIDFCHYSILFSNL 109 (305)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh-ccchhhHHHHHHHHHHHHHHHHHH
Confidence 3344444444443334578899999999988775543 44444333333322 234555667778888888889999
Q ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCcccc-------ccccee
Q psy9323 181 CISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIF-------VVNRIY 253 (289)
Q Consensus 181 ~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-------~~~~~~ 253 (289)
+||++|....-+--...+...+.-...-...+|++++.....-.. ...++..+.. .......|.. ...+..
T Consensus 110 viaIqR~fVFFfr~~t~~~F~s~~iyiWL~~vWils~~v~~~l~~-~nC~Y~y~~~-~~~y~L~C~~~~~~v~~~~P~~I 187 (305)
T PF04789_consen 110 VIAIQRFFVFFFRNLTDKVFESPVIYIWLLLVWILSIGVVYSLMS-NNCRYRYNKW-SKHYQLNCETCNSVVDISPPRGI 187 (305)
T ss_pred HHHHhhheeeeehhhhhhhccchHHHHHHHHHHHHHHHHHHHHHh-CCCeeecccc-cccEEEEcCCCCeeEeeCCCCch
Confidence 999999876664333333445666777888899998887743322 1111111110 0111222332 122344
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy9323 254 CVVSSCVSFWIPGVIMIYMYYQIYKE 279 (289)
Q Consensus 254 ~~~~~~~~~~iPl~ii~~~y~~I~~~ 279 (289)
...-..+.+.+|+.+. ..|+.+.-+
T Consensus 188 qiiE~ilQ~~IPi~Il-~iYiAIIiK 212 (305)
T PF04789_consen 188 QIIEIILQFGIPIFIL-VIYIAIIIK 212 (305)
T ss_pred hHHHHHHHHhHHHHHH-HHHHHHHHH
Confidence 5577789999996655 556555443
No 27
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=97.22 E-value=0.00012 Score=63.86 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhHhhhheeeecC-cccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhc----------ccccchhhhHHH
Q psy9323 96 LFIIVSAIFGNLLVIVSVMRHR-KLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFN----------RWLFGYFMCDVW 164 (289)
Q Consensus 96 ~~i~~~gl~gN~lvl~~~~~~~-~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~----------~~~~~~~~C~~~ 164 (289)
-+.++++++.|.+.++.+.++. +.-..--+++...|+.|++.++.-....-.....+ .+..+....+..
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILDFLVQPIIHSYGSSFVVFSDSGPFFLSKSIGQIL 85 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHHHHHHhceeecCCeeEEEeecccccccchheeeh
Confidence 3456779999999998876543 32335666788889999888775443322221111 122233344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy9323 165 NSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLI 199 (289)
Q Consensus 165 ~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~ 199 (289)
..++..+...+...++.-=+.||.++++|.+.+..
T Consensus 86 ~~~y~~~f~~~~~llaihFiYRY~av~~~~~l~~f 120 (307)
T PF10326_consen 86 LAIYCGCFGMSFSLLAIHFIYRYWAVCRPKKLRYF 120 (307)
T ss_pred hhhhhhhHHHHHHHHHhHhhhheeeeccchhhccc
Confidence 55566666667777777778999999999875433
No 28
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=97.20 E-value=0.048 Score=48.12 Aligned_cols=112 Identities=17% Similarity=0.241 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhheeeecCcccc-hhHHHHHHHHHHhHHHHHhhhhHHH---HHHHh---c--ccc
Q psy9323 85 SLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRV-ITNYFVVSLAFADMLVAFGAMGFNL---SVEIF---N--RWL 155 (289)
Q Consensus 85 ~~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~-~~~~ll~nLaiaDll~~~~~~p~~~---~~~~~---~--~~~ 155 (289)
++...+...+..++.++++.+....+..++++.-... ...+++.+|..+++=.... ....+ +..+. + ...
T Consensus 17 S~~~~~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y-~~~~~~~lyrsf~~~~dpC~i~ 95 (328)
T PF02117_consen 17 SWNFRINQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISY-AIIQIWSLYRSFFYSDDPCSIL 95 (328)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCeeeE
Confidence 3444555677778888899888888888766665554 6666777888877654332 11111 11111 1 334
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy9323 156 FGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYH 197 (289)
Q Consensus 156 ~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~ 197 (289)
+.+..|.....+..++....++.-+++.+||-+|-..|-.++
T Consensus 96 f~~~eC~~~~~~~~~~~~~~~~~q~aL~idRl~at~~~~~~~ 137 (328)
T PF02117_consen 96 FTSSECFPYYYFYYFTNSGMIFIQFALTIDRLLATFFPKYYS 137 (328)
T ss_pred eecCceeeeehHHHHHHHHHHHHHHHHHHHHHHHHhchhhhh
Confidence 567889999999999999999999999999999999986543
No 29
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=96.28 E-value=0.23 Score=43.14 Aligned_cols=131 Identities=9% Similarity=0.083 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHhHhhhheeeec-CcccchhHHHHHH----HHHHhHHHHHhhhhHHHHHHHhcc----cccchhhhHH
Q psy9323 93 LLMLFIIVSAIFGNLLVIVSVMRH-RKLRVITNYFVVS----LAFADMLVAFGAMGFNLSVEIFNR----WLFGYFMCDV 163 (289)
Q Consensus 93 ~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~~ll~n----LaiaDll~~~~~~p~~~~~~~~~~----~~~~~~~C~~ 163 (289)
...=++.+++++-|.+..+.+.++ ++..+..-..+++ ..+.|+..+....|....-...+. ...-+.-..+
T Consensus 8 ~~~h~~~~i~~Pi~~~~~y~Il~ktp~~m~~~k~~ll~~~~~~~~~d~~~~~l~~P~~~~P~~~~~~~G~l~~~gv~~~~ 87 (302)
T PF10318_consen 8 IVLHIITIISIPIYIFGFYCILFKTPKSMKSVKWYLLNHHFWNFLLDLYLSFLIIPYFFFPSPAGYPLGILSYFGVPTPI 87 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHheeEeChhhhHHHHHHHHHHHHHHHHHHHHhhhEEeeeeccchHHhhCCcchhhcccChHH
Confidence 455667778899999999877664 3322334444444 345777777777775543332221 1111234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9323 164 WNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 225 (289)
Q Consensus 164 ~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~ 225 (289)
+.++..........++..+--+||.++....+ +.. .++.-.......++++.+...|...
T Consensus 88 q~~i~~~~~~~~~~S~~~lFe~R~~~i~~~~~-~~~-~~~~r~~~~~~~y~~~~~~~~~~~~ 147 (302)
T PF10318_consen 88 QFYIGVTLLAFVGVSILSLFENRYQIIIRNRS-RSL-WKKIRIIFIIFNYIIAFLFFIPIYL 147 (302)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhcccc-ccc-chhhHHHHHHHHHHHHHHHHHHHhc
Confidence 66777777777777888888999999997654 121 2222233444445555555544443
No 30
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=96.13 E-value=0.53 Score=41.74 Aligned_cols=126 Identities=22% Similarity=0.283 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhHhhhheeeecCc----cc--chhHHHHHHHHHHhHHHHHhhhhHHHHHHHhccc-----------c
Q psy9323 93 LLMLFIIVSAIFGNLLVIVSVMRHRK----LR--VITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRW-----------L 155 (289)
Q Consensus 93 ~~~~~i~~~gl~gN~lvl~~~~~~~~----~~--~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~~-----------~ 155 (289)
.+...-..+|+.|-++-+.--.|... .+ ....-.+..|++||++.++.++.-...+...... .
T Consensus 31 avCLgSs~l~l~gallQLlp~rr~~~~~~~~~sp~~~~rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s~~~~~d~ 110 (405)
T PF02101_consen 31 AVCLGSSVLSLLGALLQLLPRRRSAGPRAPARSPSSSRRILFWLAVADLLACLGVIVRSSVWLGFPNFIDSISDVNGTDI 110 (405)
T ss_pred hhHHHHHHHHHHHHHHhhccccccccccccccCCcCCchhHHHHHHHHHHhhhhHHHHhhhhhcCCcccccccCCCCCcc
Confidence 34444455566665555542211100 11 1234578899999999988655544443332211 1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q psy9323 156 FGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPI 224 (289)
Q Consensus 156 ~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~ 224 (289)
.....|.....-..++..++.+-+.+-|+|=|+.+.+.-. +.+....-.++|..+.+++.--.
T Consensus 111 wp~afCv~ss~WIq~fYsAtfwWtfcYAVDv~Lv~~~~ag------~~~~~lYH~~aWgl~~lL~~~Gl 173 (405)
T PF02101_consen 111 WPAAFCVGSSMWIQLFYSATFWWTFCYAVDVYLVIRRSAG------RSTIWLYHMMAWGLPALLCAEGL 173 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeeccCC------CcchhHHHHHHHHHHHHHHHhcc
Confidence 1346899988877788889999999999999998866422 22335667889999998886444
No 31
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=96.10 E-value=0.092 Score=42.27 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=33.4
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy9323 154 WLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDY 196 (289)
Q Consensus 154 ~~~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~ 196 (289)
....-..|.+..-+............+++|++||+.|+...|-
T Consensus 110 p~ytI~vCSflk~f~S~t~s~~~vip~aVAIyRy~~VV~k~rl 152 (226)
T PF06681_consen 110 PQYTIFVCSFLKNFTSSTTSCAQVIPVAVAIYRYLIVVLKKRL 152 (226)
T ss_pred ceEEEEeehHHHhHHHHHhhhhccchhhhhhhhhheeeecccC
Confidence 3345678999887766666667777788999999999997663
No 32
>PF02175 7TM_GPCR_Srb: Serpentine type 7TM GPCR chemoreceptor Srb; InterPro: IPR002184 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=96.08 E-value=0.67 Score=38.36 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=40.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Q psy9323 156 FGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIM 200 (289)
Q Consensus 156 ~~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~ 200 (289)
.+...||.......+.+..+.+.-..+++||++|.....+|.+.+
T Consensus 80 I~~~~~K~~h~~~~flmT~~ml~PigftIERfiAl~~A~~YE~~r 124 (236)
T PF02175_consen 80 IDPTLFKYGHLTGLFLMTIPMLFPIGFTIERFIALKMAEKYENTR 124 (236)
T ss_pred EchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccCc
Confidence 356789999999999999999999999999999999988887643
No 33
>KOG4564|consensus
Probab=96.05 E-value=1.2 Score=41.00 Aligned_cols=166 Identities=13% Similarity=0.102 Sum_probs=104.8
Q ss_pred HHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHhcc------------cccchhhhHHHHHHHH
Q psy9323 102 AIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNR------------WLFGYFMCDVWNSLDV 169 (289)
Q Consensus 102 gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~~~------------~~~~~~~C~~~~~~~~ 169 (289)
+++.=++.+.++...|++|=..|++=.||.++=++-++..+.........+. -..+...||....+..
T Consensus 158 Sl~sL~vAl~If~~FR~L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Ck~~~~~~~ 237 (473)
T KOG4564|consen 158 SLVSLLVALIIFLYFRSLHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSLHCLISSNPVGCKLLFVFFQ 237 (473)
T ss_pred HHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccchhHHHHHHHHH
Confidence 3333334445556678888889999999999988887765555443332211 1245689999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccCCCCcccccc
Q psy9323 170 YFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLFRSHNPNSCIFVV 249 (289)
Q Consensus 170 ~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 249 (289)
.+..+..+-+.+=.++=|-.++--... .+++-.....+.|.++.++..+-.+ .+...++ ..|....
T Consensus 238 Yf~~aNf~WmlvEGlYLhtLlv~~~~s----er~~~~~y~~iGWG~P~v~v~~Wai-~r~~~~d---------~~CW~~~ 303 (473)
T KOG4564|consen 238 YFVLANFFWMLVEGLYLHTLLVVAFFS----ERRYFWLYLLIGWGVPAVFVVVWAI-VRLYLED---------TGCWDSN 303 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeecc----CccHHHHHHHHhhCCcHHHhhhHHh-Hheeecc---------ccccccC
Confidence 999999988888888777777665431 2556677889999998888865554 3322222 1355433
Q ss_pred cc-eehhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy9323 250 NR-IYCVVSSCVSFWIPGVIMIYMYYQIYKEADR 282 (289)
Q Consensus 250 ~~-~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~ 282 (289)
+. .+-++ .-.-.++++++-.+...+|.|.+-+
T Consensus 304 ~~~~~~WI-i~gPi~~ai~vNf~flinIvrILv~ 336 (473)
T KOG4564|consen 304 DTGHIWWI-IRGPILLAILVNFIFLINIVRILVT 336 (473)
T ss_pred CCcceEEE-EeccHHHHHHHHHHHHHHHHHHHHH
Confidence 32 22111 1122334566666666777766544
No 34
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=95.88 E-value=0.52 Score=40.85 Aligned_cols=108 Identities=15% Similarity=0.101 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHhhhheeeecCccc-chhHHHHHHHHHHhHHHHHhhhhHHHHHH---------Hhcccccchhhh-HHHH
Q psy9323 97 FIIVSAIFGNLLVIVSVMRHRKLR-VITNYFVVSLAFADMLVAFGAMGFNLSVE---------IFNRWLFGYFMC-DVWN 165 (289)
Q Consensus 97 ~i~~~gl~gN~lvl~~~~~~~~~~-~~~~~ll~nLaiaDll~~~~~~p~~~~~~---------~~~~~~~~~~~C-~~~~ 165 (289)
+.++++.+-|-+.++.+..+|+.+ ..-.++++--|+-|++..+.-+...+... ..++|-.+...= ....
T Consensus 13 ~~~~lsf~~Np~fiyli~~~~~~~~G~Yr~LL~~Fa~fn~~~S~~~~~vp~~vh~yry~F~~fi~dG~F~~~s~l~~~~l 92 (310)
T PF10319_consen 13 IFGILSFIVNPIFIYLIFTEKKSQFGNYRYLLLFFAIFNLIYSVVDLLVPICVHGYRYAFVVFISDGPFFEKSELGQHLL 92 (310)
T ss_pred HHHHHHHHHhhhhheeEEcccccccccHHHHHHHHHHHHHHHHHHHHHhhheeeccceEEEEEEcCCcCcCcchHHHHHH
Confidence 456668889999999988887765 36778899999999998775433222111 112232221111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH
Q psy9323 166 SLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSR 204 (289)
Q Consensus 166 ~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~ 204 (289)
.........|-..|-.==+.||+++++|...++...+..
T Consensus 93 s~RCsfIs~sYaIL~~HFvYRYl~l~~~~~~~~~F~p~g 131 (310)
T PF10319_consen 93 SIRCSFISGSYAILHIHFVYRYLVLFNSKFINKYFMPYG 131 (310)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhCcHHHHHhhhhHH
Confidence 222222333444455555899999999976544443443
No 35
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=95.15 E-value=0.53 Score=40.58 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=64.4
Q ss_pred HHHHhHhhhheeeec-CcccchhHHHHHHHHHHhHHHHHhhhhHHHHHHHh-cccccchhhhHHHHHHHHHHHHHHHHHH
Q psy9323 102 AIFGNLLVIVSVMRH-RKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIF-NRWLFGYFMCDVWNSLDVYFSSASILHL 179 (289)
Q Consensus 102 gl~gN~lvl~~~~~~-~~~~~~~~~ll~nLaiaDll~~~~~~p~~~~~~~~-~~~~~~~~~C~~~~~~~~~~~~~S~~~l 179 (289)
+++|..+.+.-+..+ |....+.-.++.-+.++++...+=. +++.-. ..|. ...|.+..-+.......-....
T Consensus 4 s~i~~~l~i~Pl~wH~ra~N~~~~~li~Wl~l~nl~~~INa----iIW~~n~~~~~--~~wCDI~~kl~~~~~~g~~~a~ 77 (283)
T PF02076_consen 4 SFIAFVLLIVPLPWHWRARNIGTCSLIFWLFLSNLIYFINA----IIWRDNDINWW--PVWCDISTKLIIGSSVGIPAAS 77 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhh----hhcCCCCCccC--ceeeeehHHHHHHHHHHHHHHH
Confidence 334444444333222 3333477788888988888765521 111111 1222 2789998877776666544444
Q ss_pred HHHHHHHHHHhhcccccc--ccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy9323 180 CCISVDRYYAIVQPLDYH--LIMTKSRLLIMLCIVWLSPALVSFLPIFL 226 (289)
Q Consensus 180 ~~is~dRy~aI~~P~~~~--~~~t~~~~~~~i~~iW~~s~~~~~~~~~~ 226 (289)
.+|+-.=| .|..+.+.. +..++|+...=..+++.++++......+.
T Consensus 78 lcI~r~L~-~I~s~r~~~~~~~~~rr~~~~d~~i~~g~Pil~m~l~yiv 125 (283)
T PF02076_consen 78 LCIMRRLY-RIASARAVSLSRSEKRRRIIIDLLICFGIPILQMALHYIV 125 (283)
T ss_pred HHHHHHHH-HHhccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44443333 244433321 11236666677888888888877665554
No 36
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=95.07 E-value=0.023 Score=43.79 Aligned_cols=60 Identities=13% Similarity=0.337 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9323 166 SLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIF 225 (289)
Q Consensus 166 ~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~ 225 (289)
.+..++.....+.-++|+++|-..|.+|.+...+.+.+|.+..+.++.++.+..-+.|.+
T Consensus 49 L~~tf~Yl~plfltvLMti~Ri~iV~~P~~~~~~Fs~~kl~~YC~~i~i~~~i~LlIPy~ 108 (153)
T PF03383_consen 49 LFGTFSYLHPLFLTVLMTINRIYIVLFPFGSEIWFSDKKLWIYCGIIAILSFISLLIPYF 108 (153)
T ss_pred eeehHHHHHHHHHHHHHHHhheEEEEecCCCccccccchhHHHHHHHHHHHHHHHHhhcC
Confidence 355566667788889999999999999999766889999999998888777777777765
No 37
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=95.02 E-value=1.8 Score=38.19 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=55.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9323 157 GYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLG 227 (289)
Q Consensus 157 ~~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~ 227 (289)
++..|.+...+.+++..++..--+.+++.=|++....-.... -.++....-+++|.++.+..+..+..+
T Consensus 90 ~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~lsa~~kw~~e~--i~~~s~yfH~~aW~iP~~~ti~vL~~~ 158 (328)
T PF01534_consen 90 ENSSCTVVFLLLYYFGMAASLWWVILTLTWFLSAGLKWGSEA--IEKKSSYFHLVAWGIPAVLTIAVLALR 158 (328)
T ss_pred CCCchhhHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccCcch--hhhhcchhhhHHhhhhHHHHHHHHHhc
Confidence 467999999999999999888888899999988877544222 356667778999999999998777543
No 38
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=94.64 E-value=2.8 Score=36.62 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=70.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy9323 158 YFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYTTHAHQLF 237 (289)
Q Consensus 158 ~~~C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~~t~~~~~~~i~~iW~~s~~~~~~~~~~~~~~~~~~~~~ 237 (289)
+..=++..++.+...+.+...-++.++-|-..+..|.++++. .++-.....-++.+++++.+.|... ....|
T Consensus 100 n~~Lk~l~~~~~~~~Y~s~lf~~Lfc~~Rl~il~~p~~~~~i-~~~i~~~~~P~i~i~p~~~~f~~~p-------a~G~C 171 (307)
T PF10322_consen 100 NHFLKILVFFYYYFNYSSMLFPVLFCLLRLIILYSPRNHKKI-CRKIFRIWIPFIFIYPFCFTFPMFP-------ALGYC 171 (307)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeCccchhHH-HHhHHHHHHHHHHHHHHHHHHHccC-------CcEEE
Confidence 456677788899999999999999999999999999876443 3333344555555555555543321 22222
Q ss_pred ccCCCCcc--c------ccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9323 238 RSHNPNSC--I------FVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 284 (289)
Q Consensus 238 ~~~~~~~c--~------~~~~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~ 284 (289)
.+.+.+.- . ..+...............-++.+++.+..+++|+||.+
T Consensus 172 ~Ql~~Pf~fGAI~I~~~~~~~~~~~~~~~l~~s~~~~~~iii~N~lm~~Klr~~k 226 (307)
T PF10322_consen 172 RQLDPPFPFGAIIITSTGSWFNIRNSIFHLFFSIFWMISIIILNILMFFKLRKLK 226 (307)
T ss_pred EeCCCCCCCCEEEEEEEcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22221110 0 01111112222333334446677788888888888765
No 39
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=93.54 E-value=5.3 Score=35.80 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy9323 161 CDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLI 199 (289)
Q Consensus 161 C~~~~~~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~ 199 (289)
--+.+++....++.....+.++++||..|-.+--.|.+.
T Consensus 123 l~~~~~l~~~y~~~~~~~~~~~~iER~~AT~~i~dYEk~ 161 (365)
T PF03125_consen 123 LFIGGFLRWHYMFSAIFCLLAIVIERCFATYFIKDYEKK 161 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344456666666777899999999999999999888763
No 40
>PF13853 7tm_4: Olfactory receptor
Probab=72.76 E-value=0.56 Score=36.04 Aligned_cols=77 Identities=18% Similarity=0.280 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh---cccccccccccC--CCCcccc-cccceehhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy9323 207 IMLCIVWLSPALVSFLPIFLGW---YTTHAHQLFRSH--NPNSCIF-VVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEA 280 (289)
Q Consensus 207 ~~i~~iW~~s~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~c~~-~~~~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l 280 (289)
.+....|..+++...+...... .....+..+|+. -...|.+ ..++.+.........+.|+.+++++|.+|++.+
T Consensus 5 ~l~~~~~~~~~~~~l~~~~~~~~l~~~nii~~f~c~~~ll~LaC~dt~~~~~~~~~~~~~~~~~~~~~Il~SY~~Il~av 84 (144)
T PF13853_consen 5 LLAAGSWLSGLLNSLPHTLLTLSLCFCNIIHHFCCDPPLLKLACSDTSINEIVGFVVAIFILLGPLLLILFSYIRILRAV 84 (144)
T ss_pred hhhHHHHHHHHHHHHHHHHHHeeCCCCCCCcceeeCHHHhcccCCchhhhheeeecccceeEEEEeeccccceeEEEehh
Confidence 3466778887777766654321 111222222321 1234654 334555555666667799999999999999977
Q ss_pred Hhh
Q psy9323 281 DRQ 283 (289)
Q Consensus 281 ~~~ 283 (289)
.|.
T Consensus 85 lki 87 (144)
T PF13853_consen 85 LKI 87 (144)
T ss_pred hcc
Confidence 664
No 41
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=65.43 E-value=6.1 Score=28.05 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy9323 261 SFWIPGVIMIYMYYQIYKEADRQEHMLF 288 (289)
Q Consensus 261 ~~~iPl~ii~~~y~~I~~~l~~~~~~~~ 288 (289)
.++.+.+++.+.|..++|-.||++|+++
T Consensus 11 ~ll~~vl~~~ifyFli~RPQrKr~K~~~ 38 (97)
T COG1862 11 LLLPLVLIFAIFYFLIIRPQRKRMKEHQ 38 (97)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3444556677889989888888877764
No 42
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=57.84 E-value=19 Score=24.68 Aligned_cols=23 Identities=13% Similarity=0.381 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhc
Q psy9323 266 GVIMIYMYYQIYKEADRQEHMLF 288 (289)
Q Consensus 266 l~ii~~~y~~I~~~l~~~~~~~~ 288 (289)
++++.+.|..+.|..||++|+.+
T Consensus 9 v~~~~i~yf~~~rpqkk~~k~~~ 31 (82)
T PF02699_consen 9 VIIFVIFYFLMIRPQKKQQKEHQ 31 (82)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHhhheecHHHHHHHHHH
Confidence 35666778888888877777654
No 43
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=56.85 E-value=21 Score=23.59 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=23.5
Q ss_pred eehhhhhhHHHHHHHHHHH-HHHHHHHHHHHhhhhh
Q psy9323 252 IYCVVSSCVSFWIPGVIMI-YMYYQIYKEADRQEHM 286 (289)
Q Consensus 252 ~~~~~~~~~~~~iPl~ii~-~~y~~I~~~l~~~~~~ 286 (289)
.|.++..++..+-|+.++. +|..++.+.+.++.|+
T Consensus 19 P~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere 54 (74)
T PF15086_consen 19 PYEFLTTVLLILTPLFIISAVLSWKLAKAIEKEERE 54 (74)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666777877665 6778888887665554
No 44
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.63 E-value=41 Score=27.22 Aligned_cols=36 Identities=11% Similarity=0.215 Sum_probs=30.7
Q ss_pred ceehhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy9323 251 RIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQEHM 286 (289)
Q Consensus 251 ~~~~~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~ 286 (289)
-.|.+..+.+..++|+.++.-++-+|.+..+.++||
T Consensus 159 W~y~v~~N~iWivvP~~~l~~s~~~i~~a~~~~~~~ 194 (194)
T PF05241_consen 159 WFYFVFPNGIWIVVPLLLLYQSWKEIARAFRAAQKK 194 (194)
T ss_pred eeehhhcchHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 355667788999999999999999999998887765
No 45
>COG3771 Predicted membrane protein [Function unknown]
Probab=47.28 E-value=35 Score=23.53 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=26.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Q psy9323 255 VVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLFR 289 (289)
Q Consensus 255 ~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~~~r 289 (289)
-..+.+++.+.-++...+|.|.-.+.+|-.|+++|
T Consensus 46 a~lF~~G~~lgwli~g~fy~k~~l~~~~l~rqiKr 80 (97)
T COG3771 46 ATLFAAGFALGWLICGLFYLKVRLSLMRLERQIKR 80 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888888889999987777776666654
No 46
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.14 E-value=40 Score=21.74 Aligned_cols=34 Identities=6% Similarity=0.052 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q psy9323 255 VVSSCVSFWIPGVIMIYMYYQIYKEADRQEHMLF 288 (289)
Q Consensus 255 ~~~~~~~~~iPl~ii~~~y~~I~~~l~~~~~~~~ 288 (289)
...+.+++++-.++...-+.+.-++.|+.+|+++
T Consensus 25 l~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~ 58 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELK 58 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666554
No 47
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=45.67 E-value=18 Score=24.90 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=16.1
Q ss_pred HHHH-HHHHHHHHHHHHHHhhhhhhc
Q psy9323 264 IPGV-IMIYMYYQIYKEADRQEHMLF 288 (289)
Q Consensus 264 iPl~-ii~~~y~~I~~~l~~~~~~~~ 288 (289)
+|++ ++++.|..+.|-.||++++.+
T Consensus 7 ~~~vv~~~i~yf~~~rpqkK~~k~~~ 32 (84)
T TIGR00739 7 LPLVLIFLIFYFLIIRPQRKRRKAHK 32 (84)
T ss_pred HHHHHHHHHHHHheechHHHHHHHHH
Confidence 3444 455778788877777776653
No 48
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=42.46 E-value=15 Score=27.37 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=7.8
Q ss_pred HHHHhHhhhheeeecCcccchh
Q psy9323 102 AIFGNLLVIVSVMRHRKLRVIT 123 (289)
Q Consensus 102 gl~gN~lvl~~~~~~~~~~~~~ 123 (289)
|++|=++.|+.++||++.|.+.
T Consensus 76 GvIg~Illi~y~irR~~Kk~~~ 97 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKKSSS 97 (122)
T ss_dssp HHHHHHHHHHHHHHHHS-----
T ss_pred HHHHHHHHHHHHHHHHhccCCC
Confidence 4555444444444444434433
No 49
>PF15102 TMEM154: TMEM154 protein family
Probab=40.85 E-value=9.5 Score=29.16 Aligned_cols=8 Identities=38% Similarity=0.472 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy9323 260 VSFWIPGV 267 (289)
Q Consensus 260 ~~~~iPl~ 267 (289)
++.+||++
T Consensus 59 LmIlIP~V 66 (146)
T PF15102_consen 59 LMILIPLV 66 (146)
T ss_pred EEEeHHHH
Confidence 33445533
No 50
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=38.90 E-value=66 Score=21.64 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=35.8
Q ss_pred HHHHHHHhHhhhheeeecCcccchhHHHHHHHHHHhHHHHHhhhhHHH
Q psy9323 99 IVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNL 146 (289)
Q Consensus 99 ~~~gl~gN~lvl~~~~~~~~~~~~~~~ll~nLaiaDll~~~~~~p~~~ 146 (289)
.++|+++=...+.++..+.+.++-.++=.+|.+++.++....--|+..
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~ 51 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGA 51 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHH
Confidence 445666666677777777788888888899999999887776556544
No 51
>TIGR02736 cbb3_Q_epsi cytochrome c oxidase, cbb3-type, CcoQ subunit, epsilon-Proteobacterial. Members of this protein family are restricted to the epsilon branch of the Proteobacteria. All members are found in operons containing the other three structural subunits of the cbb3 type of cytochrome c oxidase. These small proteins show remote sequence similarity to the CcoQ subunit in other cytochrome c oxidase systems, so this family is assumed to represent the epsilonproteobacterial variant of CcoQ.
Probab=35.46 E-value=62 Score=20.28 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy9323 262 FWIPGVIMIYMYYQIYKEADRQEHML 287 (289)
Q Consensus 262 ~~iPl~ii~~~y~~I~~~l~~~~~~~ 287 (289)
|++-+++.++.|+-++..-|++++..
T Consensus 5 f~~ti~lvv~LYgY~yhLYrsek~G~ 30 (56)
T TIGR02736 5 FAFTLLLVIFLYAYIYHLYRSQKKGE 30 (56)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 34456667778888877777766543
No 52
>PF10325 7TM_GPCR_Srz: Serpentine type 7TM GPCR chemoreceptor Srz; InterPro: IPR018817 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class z (Srz), a solo family amongst the superfamilies of chemoreceptors [, ]. The genes encoding Srz appear to be under strong adaptive evolutionary pressure [].
Probab=35.21 E-value=2.7e+02 Score=23.37 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-chhhHHHHHHHHHHHHHHHHH
Q psy9323 167 LDVYFSSASILHLCCISVDRYYAIVQPLDYHLI-MTKSRLLIMLCIVWLSPALVS 220 (289)
Q Consensus 167 ~~~~~~~~S~~~l~~is~dRy~aI~~P~~~~~~-~t~~~~~~~i~~iW~~s~~~~ 220 (289)
.......+--..+.++|++|+.---.|-.-+.. .++|...+.+-.......+-.
T Consensus 88 ~l~i~~~v~~lllsLLAIqRFllyFfP~~Ek~v~~~~k~~~~~I~~lY~~~~~k~ 142 (267)
T PF10325_consen 88 ILYIITQVFHLLLSLLAIQRFLLYFFPSSEKYVNFSQKNIKKIIWFLYIFFILKD 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 344444555677899999999999999742222 245555555555555444443
No 53
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=33.59 E-value=45 Score=24.11 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=15.1
Q ss_pred HHHHHH-HHHHHHHHHHHHhhhhhhc
Q psy9323 264 IPGVIM-IYMYYQIYKEADRQEHMLF 288 (289)
Q Consensus 264 iPl~ii-~~~y~~I~~~l~~~~~~~~ 288 (289)
+|++++ .+.|..++|-.||++++.+
T Consensus 22 l~lvii~~i~yf~~~RpqkK~~k~~~ 47 (106)
T PRK05585 22 LPLVVFFAIFYFLIIRPQQKRQKEHK 47 (106)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344444 4467777777777766543
No 54
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.66 E-value=62 Score=22.10 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q psy9323 264 IPGVIMIYMYYQIYKEADRQEH 285 (289)
Q Consensus 264 iPl~ii~~~y~~I~~~l~~~~~ 285 (289)
+-+++-++....+++..||.+|
T Consensus 14 v~~iiaIvvW~iv~ieYrk~~r 35 (81)
T PF00558_consen 14 VALIIAIVVWTIVYIEYRKIKR 35 (81)
T ss_dssp HHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 55
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=26.72 E-value=1.4e+02 Score=17.41 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q psy9323 268 IMIYMYYQIYKEADRQEHMLF 288 (289)
Q Consensus 268 ii~~~y~~I~~~l~~~~~~~~ 288 (289)
.+.+.-.-++|+...++|...
T Consensus 21 ~i~iva~~iYRKw~aRkr~l~ 41 (43)
T PF08114_consen 21 GIGIVALFIYRKWQARKRALQ 41 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333344456677655555443
No 56
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=25.77 E-value=1e+02 Score=17.68 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy9323 266 GVIMIYMYYQIYKEADRQ 283 (289)
Q Consensus 266 l~ii~~~y~~I~~~l~~~ 283 (289)
+++..++|..-+|+-+++
T Consensus 19 iii~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 19 IIICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHcccccc
Confidence 455556676666655544
No 57
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=1.5e+02 Score=18.95 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q psy9323 266 GVIMIYMYYQIYKEADRQEHML 287 (289)
Q Consensus 266 l~ii~~~y~~I~~~l~~~~~~~ 287 (289)
+.+.++.++.|+...|+++|+.
T Consensus 16 ~~~~l~fiavi~~ayr~~~K~~ 37 (60)
T COG4736 16 IAFTLFFIAVIYFAYRPGKKGE 37 (60)
T ss_pred HHHHHHHHHHHHHHhcccchhh
Confidence 4445556666666677666654
No 58
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.46 E-value=1.6e+02 Score=17.62 Aligned_cols=21 Identities=0% Similarity=0.025 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy9323 266 GVIMIYMYYQIYKEADRQEHM 286 (289)
Q Consensus 266 l~ii~~~y~~I~~~l~~~~~~ 286 (289)
++..++..+.++...++++|+
T Consensus 16 v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHcccchh
Confidence 344444555555556655443
No 59
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=21.22 E-value=1.1e+02 Score=19.19 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhHhhhheeee
Q psy9323 94 LMLFIIVSAIFGNLLVIVSVMR 115 (289)
Q Consensus 94 ~~~~i~~~gl~gN~lvl~~~~~ 115 (289)
+++++.+--++||+.++---.+
T Consensus 7 lIIviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 7 LIIVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHHHhHHHHHHHhcc
Confidence 4444455567899988865443
No 60
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=20.83 E-value=2e+02 Score=17.07 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy9323 264 IPGVIMIYMYYQIYKEADRQE 284 (289)
Q Consensus 264 iPl~ii~~~y~~I~~~l~~~~ 284 (289)
+-+.+..+.-..|+.++|+-+
T Consensus 13 Iil~If~~iGl~IyQkikqIr 33 (49)
T PF11044_consen 13 IILGIFAWIGLSIYQKIKQIR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455666665543
Done!