RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9323
(289 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 130 bits (330), Expect = 1e-36
Identities = 52/174 (29%), Positives = 86/174 (49%)
Query: 111 VSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDVY 170
+ ++R +KLR TN F+++LA AD+L + L + W FG +C + L V
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60
Query: 171 FSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPIFLGWYT 230
ASIL L IS+DRY AIV PL Y I T R +++ +VW+ L+S P+ W
Sbjct: 61 NGYASILLLTAISIDRYLAIVHPLRYRRIRTPRRAKVLILVVWVLALLLSLPPLLFSWLR 120
Query: 231 THAHQLFRSHNPNSCIFVVNRIYCVVSSCVSFWIPGVIMIYMYYQIYKEADRQE 284
T + + R Y ++S+ + F +P ++++ Y I + ++
Sbjct: 121 TVEEGNVTTCLIDFPEESTKRSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRA 174
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 68.7 bits (168), Expect = 3e-13
Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 12/191 (6%)
Query: 92 ILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIF 151
I++ I + GN++VI V+ K++ + ++++LA +D+L + F + I
Sbjct: 44 IVVYSTIFFFGLVGNIIVIY-VLTKTKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYIL 101
Query: 152 NRWLFGYFMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCI 211
+W FG F C + + L S+ + +SVDRY AIV P+ + I T I+ +
Sbjct: 102 FQWSFGEFACKIVSGLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGYIVSLV 161
Query: 212 VWLSPALVSFLPIFLGWYTTHAHQ-----LFRSHNPNSCIFVVNRIYCVVSSCVSFWIPG 266
+W+ +++ PI + T H+ +F ++ + +N + + IP
Sbjct: 162 IWII-SIIETTPILFVYTTKKDHETLICCMFYNNKTMNWKLFINFEINI----IGMLIPL 216
Query: 267 VIMIYMYYQIY 277
I++Y Y +I
Sbjct: 217 TILLYCYSKIL 227
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 51.9 bits (124), Expect = 1e-07
Identities = 43/184 (23%), Positives = 93/184 (50%), Gaps = 19/184 (10%)
Query: 57 TEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLM------------LFIIVSAIF 104
+ + +S S+ S YDY+ + LI +K M + I + +F
Sbjct: 55 SPNSNSSSSSSSSSSSITYDYEYENNITYELINIKNKCMYPSISEYIKIFYIIIFILGLF 114
Query: 105 GNLLVIVSVMRHRKLRVITNYFVVSLAFADML--VAFGAMGFNLSVEIFNRWLFGYFMCD 162
GN +I+ ++ +K++ IT+ ++ +LA +D++ + F + +N F++W+FG FMC
Sbjct: 115 GNAAIIM-ILFCKKIKTITDIYIFNLAISDLIFVIDFPFIIYNE----FDQWIFGDFMCK 169
Query: 163 VWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFL 222
V ++ +++ + +S+DRY+AI+ P+ + T + +I+ I W+ +++
Sbjct: 170 VISASYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCIISWILSLIITSP 229
Query: 223 PIFL 226
F+
Sbjct: 230 AYFI 233
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 38.3 bits (90), Expect = 0.002
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 99 IVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGY 158
V IFGN+++I+ + +KLR +Y + AD+L G + F V +F
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFV--VLLFTGTQLTR 58
Query: 159 FMCDVWNSLDVYFSSASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIV 212
C + ++ +A + I +DR A+ P+ Y L+ + L I L
Sbjct: 59 NECFLIIIPYIFGQTAQSPLMLMIGIDRLIAVKFPIFYRLLSSSKYLFIQLIFP 112
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 37.6 bits (88), Expect = 0.004
Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 1/124 (0%)
Query: 103 IFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCD 162
I N L+ ++ L+ + A ++ ++ + + + + + + +
Sbjct: 8 IILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTIFLFYVVPMTLLDLSFLPELLNS 67
Query: 163 VWNSLDVYFS-SASILHLCCISVDRYYAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSF 221
L + S L IS++R+ A+ P Y I + I++ +W+ ++S
Sbjct: 68 HIGGLILLGLYEISPLTHLLISLNRFCAVFFPFKYKKIFSIKNTKIIITFIWIIAIIIST 127
Query: 222 LPIF 225
L F
Sbjct: 128 LFYF 131
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 34.9 bits (80), Expect = 0.039
Identities = 53/199 (26%), Positives = 98/199 (49%), Gaps = 24/199 (12%)
Query: 86 LLITLKILLMLFIIVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFN 145
+I ILL +F ++ GN+LVI ++ R + V+ Y + ++A +D+++ F + F
Sbjct: 30 FVIVFYILLFIFGLI----GNVLVIAVLIVKRFMFVVDVY-LFNIAMSDLMLVF-SFPFI 83
Query: 146 LSVEIFNRWLFGYFMCDVWNSLDVYFSS--ASILHLCCISVDRYYAIVQPLDYHLIMTKS 203
+ ++ N W+FG FMC + L VYF +++ + IS+DRY +V I KS
Sbjct: 84 IHNDL-NEWIFGEFMCKL--VLGVYFVGFFSNMFFVTLISIDRYILVVNATK---IKNKS 137
Query: 204 -RLLIMLCI-VWLSPALVSFLPIFLGWYTTHA----HQLFRSHNPNSCIFVVNRIYCVVS 257
L ++L + W+ ++S +P + +Y + +F ++ N +
Sbjct: 138 ISLSVLLSVAAWVCSVILS-MPAMVLYYVDNTDNLKQCIFNDYHENFSWSAFFNFEINIF 196
Query: 258 SCVSFWIPGVIMIYMYYQI 276
V IP +I+IY Y +I
Sbjct: 197 GIV---IPLIILIYCYSKI 212
>gnl|CDD|225803 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 32.4 bits (74), Expect = 0.35
Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 27/113 (23%)
Query: 43 SIYFTNGSVFNYLLTEANATSGVISNDSYFPLYDYDERSFALSLLITLKILLMLFIIVSA 102
Y + +++ YL T S L L+ +L ++ +++
Sbjct: 532 GSYLEDITLWAYLGTTGGVLGVE---------------SITLGALLQAVLLFLITYVLTR 576
Query: 103 IFGNLLVIVSVMRHRKL--------RVITNYFVVSLAFADMLVAFGAMGFNLS 147
L V V++ L + Y ++++ LV +G +LS
Sbjct: 577 NLPGWLE-VRVLQRLDLDAGTRYSITTLLGYLLIAIGG---LVGLSTLGIDLS 625
>gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein)
reductase; Provisional.
Length = 247
Score = 30.2 bits (69), Expect = 0.94
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 29 LTAAIAPTLRK-PNASIYFTNGSV 51
LT A+ P L K P AS+ FT+ SV
Sbjct: 131 LTQALLPLLLKSPAASLVFTSSSV 154
>gnl|CDD|100105 cd01335, Radical_SAM, Radical SAM superfamily. Enzymes of this
family generate radicals by combining a 4Fe-4S cluster
and S-adenosylmethionine (SAM) in close proximity. They
are characterized by a conserved CxxxCxxC motif, which
coordinates the conserved iron-sulfur cluster.
Mechanistically, they share the transfer of a single
electron from the iron-sulfur cluster to SAM, which
leads to its reductive cleavage to methionine and a
5'-deoxyadenosyl radical, which, in turn, abstracts a
hydrogen from the appropriately positioned carbon atom.
Depending on the enzyme, SAM is consumed during this
process or it is restored and reused. Radical SAM
enzymes catalyze steps in metabolism, DNA repair, the
biosynthesis of vitamins and coenzymes, and the
biosynthesis of many antibiotics. Examples are biotin
synthase (BioB), lipoyl synthase (LipA), pyruvate
formate-lyase (PFL), coproporphyrinogen oxidase (HemN),
lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide
reductase (ARR), and MoaA, an enzyme of the
biosynthesis of molybdopterin.
Length = 204
Score = 29.6 bits (66), Expect = 1.4
Identities = 8/68 (11%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 110 IVSVMRHRKLRVITNYFVVSLAFADMLVAFGAMGFNLSVEIFNRWLFGYFMCDVWNSLDV 169
+ + ++ + TN +++ L G G +S++ + + S
Sbjct: 68 LKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSLDSGD-EEVADKIRGSGESFKE 126
Query: 170 YFSSASIL 177
+ L
Sbjct: 127 RLEALKEL 134
>gnl|CDD|224977 COG2066, GlsA, Glutaminase [Amino acid transport and metabolism].
Length = 309
Score = 29.5 bits (67), Expect = 1.7
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 156 FGYFMCDVWNSLDVYFSSASILHLCCISV 184
FG DV +LDVYF H C I +
Sbjct: 179 FGNLEHDVEEALDVYF------HQCAIEM 201
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 29.7 bits (66), Expect = 2.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 205 LLIMLCIVWLSPALVSFLPIFLGWYTTHAHQ 235
+LI+L VWL AL+SF P W T H+
Sbjct: 28 ILIVLFAVWLMAALLSFNPSDPSWSQTAWHE 58
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 29.0 bits (65), Expect = 3.2
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 8/44 (18%)
Query: 99 IVSAIFGNLLVIVSVMRHRKLRVITNYFVVSLAFADMLVAFGAM 142
I S IFG + VS VI + A A AM
Sbjct: 57 IFSKIFGWIGAAVS--------VIAGALAILAATGVGAAAGAAM 92
>gnl|CDD|234880 PRK00971, PRK00971, glutaminase; Provisional.
Length = 307
Score = 29.0 bits (66), Expect = 3.2
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 6/29 (20%)
Query: 156 FGYFMCDVWNSLDVYFSSASILHLCCISV 184
FG DV LD YF H C + +
Sbjct: 177 FGNIENDVETVLDTYF------HQCALEM 199
>gnl|CDD|177590 PHA03349, PHA03349, tegument protein UL16; Provisional.
Length = 343
Score = 28.9 bits (65), Expect = 3.3
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 16/76 (21%)
Query: 196 YHLIMTKSRLLIMLCIVWLSPALVSFLP------------IFLGWYTTHAHQLFRSHNPN 243
+ L+ + SRL I + L+P L F P IFL Y T L
Sbjct: 23 WRLVRSDSRLKIFRAVTALTPRLARFAPPPPDPTRAKFVEIFL--YLTRPKALRLPPKTF 80
Query: 244 SCIFVVN--RIYCVVS 257
+F+ N R YC+ +
Sbjct: 81 HVLFLFNGERAYCLTA 96
>gnl|CDD|218619 pfam05510, Sarcoglycan_2, Sarcoglycan alpha/epsilon. Sarcoglycans
are a subcomplex of transmembrane proteins which are
part of the dystrophin-glycoprotein complex. They are
expressed in the skeletal, cardiac and smooth muscle.
Although numerous studies have been conducted on the
sarcoglycan subcomplex in skeletal and cardiac muscle,
the manner of the distribution and localisation of these
proteins along the nonjunctional sarcolemma is not
clear. This family contains alpha and epsilon members.
Length = 398
Score = 28.2 bits (63), Expect = 5.5
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 6/61 (9%)
Query: 61 ATSGVISNDSYF--PLYDYDERSFALSLLITLKILLMLFIIVSAIFGNLLVIVSVMRHRK 118
G++ +D + P R + ++T I L+ V + LL + +
Sbjct: 270 NGDGILFHDPEYAPPRELVPYRDYGDEFVVTFAIPLL----VFLLLVLLLAYIMCFQREG 325
Query: 119 L 119
Sbjct: 326 R 326
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated.
Length = 613
Score = 27.9 bits (63), Expect = 6.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 176 ILHLCCI--SVDRY-YAIVQPLDYHLIMTKSRLLIMLCIVWLSPALVSFLPI 224
ILH C S++R YA+ L+ + + ML WLSP V +P+
Sbjct: 461 ILH-CSPTGSIERVIYAL---LEKAAKEEEEGKVPML-PTWLSPTQVRVIPV 507
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 28.0 bits (63), Expect = 6.4
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 182 ISVDRYYAIVQPLD-YHLIMTKSRLLIMLCIVWLSPALVSFL 222
+S +RY AI P+ I +RL ++ I WL L+S +
Sbjct: 96 LSTNRYLAICFPISRLTKIWQSARLWKIILIYWLPGLLISLV 137
>gnl|CDD|239540 cd03457, intradiol_dioxygenase_like, Intradiol dioxygenase
supgroup. Intradiol dioxygenases catalyze the critical
ring-cleavage step in the conversion of catecholate
derivatives to citric acid cycle intermediates. They
break the catechol C1-C2 bond and utilize Fe3+, as
opposed to the extradiol-cleaving enzymes which break
the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The
family contains catechol 1,2-dioxygenases and
protocatechuate 3,4-dioxygenases. The specific function
of this subgroup is unknown.
Length = 188
Score = 27.2 bits (61), Expect = 7.4
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 5/25 (20%)
Query: 219 VSFLPIFLGWY---TTHAHQLFRSH 240
V+F IF GWY TH H F+ H
Sbjct: 89 VTFTTIFPGWYPGRATHIH--FKVH 111
>gnl|CDD|184262 PRK13706, PRK13706, conjugal transfer pilus acetylation protein
TraX; Provisional.
Length = 248
Score = 27.2 bits (60), Expect = 8.8
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 258 SCVSFWIPGVIMIYMYYQIYKEADRQEHM 286
S S+ I G++M+ + +++Y+ DR E +
Sbjct: 152 SGTSYGIAGLLMLAVSHRLYRAEDRAERL 180
>gnl|CDD|191140 pfam04960, Glutaminase, Glutaminase. This family of enzymes
deaminates glutamine to glutamate EC:3.5.1.2.
Length = 286
Score = 27.2 bits (61), Expect = 9.2
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 156 FGYFMCDVWNSLDVYFSSASILHLCCISV 184
+G F DV +LD+YF C + +
Sbjct: 156 YGNFPHDVEAALDLYF------RQCALEM 178
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.140 0.437
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,680,186
Number of extensions: 1430698
Number of successful extensions: 2568
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2523
Number of HSP's successfully gapped: 174
Length of query: 289
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 193
Effective length of database: 6,679,618
Effective search space: 1289166274
Effective search space used: 1289166274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 58 (26.0 bits)