Query psy9326
Match_columns 125
No_of_seqs 119 out of 779
Neff 5.7
Searched_HMMs 46136
Date Sat Aug 17 00:28:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9326.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9326hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1448 TyrB Aspartate/tyrosin 100.0 2.2E-43 4.7E-48 294.2 9.7 120 6-125 237-357 (396)
2 KOG1411|consensus 100.0 3.8E-43 8.2E-48 290.9 6.6 108 18-125 277-384 (427)
3 KOG1412|consensus 100.0 3.8E-42 8.2E-47 282.6 9.8 110 16-125 255-364 (410)
4 PLN02397 aspartate transaminas 99.5 5.7E-14 1.2E-18 117.5 11.9 111 13-123 267-378 (423)
5 PRK09257 aromatic amino acid a 99.4 1.5E-12 3.2E-17 107.2 10.7 111 13-123 244-355 (396)
6 PTZ00376 aspartate aminotransf 99.4 2.3E-12 5E-17 106.6 10.8 112 13-124 249-361 (404)
7 PRK08637 hypothetical protein; 98.5 2E-06 4.3E-11 70.8 10.8 105 14-122 226-334 (388)
8 PLN02607 1-aminocyclopropane-1 98.1 2.9E-05 6.3E-10 66.1 9.5 94 14-122 278-372 (447)
9 TIGR01264 tyr_amTase_E tyrosin 97.9 0.00013 2.7E-09 60.2 9.7 99 14-122 239-338 (401)
10 PF00155 Aminotran_1_2: Aminot 97.9 9.3E-05 2E-09 59.3 8.6 94 14-123 220-314 (363)
11 PRK06108 aspartate aminotransf 97.7 0.00028 6.1E-09 57.2 9.2 93 14-122 231-324 (382)
12 PLN02231 alanine transaminase 97.7 0.00036 7.8E-09 61.0 10.0 99 14-120 350-454 (534)
13 PTZ00377 alanine aminotransfer 97.6 0.00051 1.1E-08 58.5 9.6 100 13-120 297-402 (481)
14 PLN02450 1-aminocyclopropane-1 97.5 0.00046 1E-08 59.0 8.6 94 14-122 271-365 (468)
15 PLN02368 alanine transaminase 97.4 0.001 2.3E-08 56.1 9.4 100 13-120 289-394 (407)
16 PRK15481 transcriptional regul 97.4 0.0015 3.2E-08 54.5 10.1 95 13-122 280-374 (431)
17 PRK05957 aspartate aminotransf 97.4 0.0017 3.7E-08 53.5 9.6 95 13-122 231-326 (389)
18 PTZ00433 tyrosine aminotransfe 97.3 0.0024 5.2E-08 53.1 9.8 100 13-122 247-347 (412)
19 PRK08068 transaminase; Reviewe 97.3 0.0024 5.1E-08 52.5 9.5 91 14-122 239-331 (389)
20 PRK09148 aminotransferase; Val 97.3 0.0024 5.3E-08 53.0 9.4 93 14-123 237-330 (405)
21 PRK06855 aminotransferase; Val 97.3 0.0032 6.9E-08 53.0 10.1 102 14-123 242-345 (433)
22 PRK07550 hypothetical protein; 97.2 0.0036 7.7E-08 51.3 9.9 92 14-122 235-327 (386)
23 PRK07865 N-succinyldiaminopime 97.2 0.0042 9.1E-08 50.5 10.3 92 13-122 221-313 (364)
24 cd00609 AAT_like Aspartate ami 97.2 0.0039 8.5E-08 48.7 9.4 95 14-123 203-298 (350)
25 PLN02376 1-aminocyclopropane-1 97.1 0.0049 1.1E-07 53.4 9.9 93 14-122 278-372 (496)
26 PRK08636 aspartate aminotransf 97.0 0.0073 1.6E-07 50.0 10.0 93 13-123 246-340 (403)
27 PRK08912 hypothetical protein; 96.9 0.0096 2.1E-07 48.8 9.6 91 14-122 231-323 (387)
28 PRK12414 putative aminotransfe 96.9 0.0093 2E-07 49.1 9.3 91 13-121 233-324 (384)
29 PRK09440 avtA valine--pyruvate 96.8 0.012 2.5E-07 48.8 9.6 98 14-122 248-346 (416)
30 PRK07681 aspartate aminotransf 96.8 0.014 2.9E-07 48.3 10.0 92 14-122 238-330 (399)
31 TIGR01265 tyr_nico_aTase tyros 96.8 0.012 2.7E-07 48.7 9.7 100 14-122 240-340 (403)
32 PRK09265 aminotransferase AlaT 96.8 0.013 2.9E-07 48.4 9.9 100 14-122 239-339 (404)
33 PRK08363 alanine aminotransfer 96.8 0.0089 1.9E-07 49.2 8.8 97 14-121 236-333 (398)
34 PRK09082 methionine aminotrans 96.8 0.0053 1.1E-07 50.5 7.3 92 14-122 235-327 (386)
35 COG0436 Aspartate/tyrosine/aro 96.8 0.011 2.3E-07 49.9 9.1 93 18-123 240-333 (393)
36 PRK07682 hypothetical protein; 96.8 0.0082 1.8E-07 48.9 8.2 91 14-121 225-316 (378)
37 PRK06836 aspartate aminotransf 96.8 0.0075 1.6E-07 49.8 8.1 93 14-122 243-337 (394)
38 PRK08960 hypothetical protein; 96.8 0.012 2.6E-07 48.3 9.1 94 13-122 232-327 (387)
39 PRK07568 aspartate aminotransf 96.8 0.0096 2.1E-07 48.7 8.5 93 14-122 234-327 (397)
40 PRK06290 aspartate aminotransf 96.7 0.01 2.2E-07 49.8 8.7 91 14-122 250-341 (410)
41 TIGR03540 DapC_direct LL-diami 96.7 0.016 3.5E-07 47.3 9.7 92 14-122 236-328 (383)
42 PRK08175 aminotransferase; Val 96.7 0.013 2.8E-07 48.3 9.0 92 14-123 236-329 (395)
43 PRK06348 aspartate aminotransf 96.7 0.017 3.6E-07 47.5 9.3 93 14-122 233-326 (384)
44 PRK07337 aminotransferase; Val 96.6 0.016 3.5E-07 47.5 8.7 94 14-122 231-325 (388)
45 PRK09276 LL-diaminopimelate am 96.5 0.026 5.6E-07 46.1 9.6 92 14-122 238-330 (385)
46 PRK07777 aminotransferase; Val 96.5 0.025 5.3E-07 46.4 9.4 90 14-121 231-322 (387)
47 PRK07366 succinyldiaminopimela 96.5 0.022 4.7E-07 46.7 8.9 93 13-123 237-331 (388)
48 PRK06107 aspartate aminotransf 96.5 0.024 5.2E-07 46.9 9.2 92 14-121 240-332 (402)
49 PRK05764 aspartate aminotransf 96.5 0.032 7E-07 45.5 9.8 92 14-121 237-329 (393)
50 PRK07683 aminotransferase A; V 96.5 0.027 5.8E-07 46.4 9.4 92 14-122 232-324 (387)
51 PRK09105 putative aminotransfe 96.5 0.022 4.7E-07 47.0 8.7 84 13-117 231-315 (370)
52 TIGR03542 DAPAT_plant LL-diami 96.4 0.028 6E-07 46.6 9.2 97 14-122 245-346 (402)
53 PRK07590 L,L-diaminopimelate a 96.4 0.026 5.6E-07 46.8 8.9 98 13-122 247-353 (409)
54 TIGR03539 DapC_actino succinyl 96.3 0.05 1.1E-06 44.3 9.9 91 13-121 215-306 (357)
55 PRK08361 aspartate aminotransf 96.2 0.023 4.9E-07 46.7 7.7 95 14-122 236-331 (391)
56 PRK07309 aromatic amino acid a 96.2 0.041 8.8E-07 45.4 9.2 93 13-122 235-328 (391)
57 PRK13355 bifunctional HTH-doma 96.2 0.046 9.9E-07 47.1 9.6 100 14-122 352-452 (517)
58 PLN02656 tyrosine transaminase 96.1 0.069 1.5E-06 44.4 10.1 100 13-121 239-341 (409)
59 PRK08056 threonine-phosphate d 96.1 0.028 6.2E-07 45.7 7.5 90 14-122 211-301 (356)
60 PRK05942 aspartate aminotransf 96.1 0.052 1.1E-06 44.7 9.0 92 14-122 242-334 (394)
61 PRK03967 histidinol-phosphate 96.0 0.02 4.3E-07 46.4 5.9 76 13-104 202-278 (337)
62 PLN00143 tyrosine/nicotianamin 95.9 0.096 2.1E-06 43.7 9.9 99 14-122 241-343 (409)
63 COG1167 ARO8 Transcriptional r 95.8 0.069 1.5E-06 45.8 9.1 104 8-123 292-395 (459)
64 PRK06207 aspartate aminotransf 95.8 0.099 2.1E-06 43.5 9.7 94 14-123 250-344 (405)
65 PRK07324 transaminase; Validat 95.8 0.084 1.8E-06 43.4 9.0 94 13-122 220-314 (373)
66 PLN00175 aminotransferase fami 95.8 0.089 1.9E-06 44.0 9.2 92 14-122 258-350 (413)
67 TIGR03537 DapC succinyldiamino 95.7 0.12 2.6E-06 41.9 9.3 91 14-122 205-296 (350)
68 TIGR01140 L_thr_O3P_dcar L-thr 95.6 0.035 7.6E-07 44.7 6.1 89 14-122 193-282 (330)
69 PLN00145 tyrosine/nicotianamin 95.6 0.15 3.3E-06 43.0 10.1 99 14-122 261-363 (430)
70 PRK09147 succinyldiaminopimela 94.9 0.23 4.9E-06 40.9 8.9 90 14-122 244-334 (396)
71 PRK05387 histidinol-phosphate 94.8 0.2 4.3E-06 40.2 8.1 90 14-122 209-300 (353)
72 TIGR03538 DapC_gpp succinyldia 94.8 0.34 7.3E-06 39.8 9.5 90 14-122 243-333 (393)
73 PRK02610 histidinol-phosphate 94.7 0.24 5.1E-06 40.6 8.4 90 13-122 232-322 (374)
74 TIGR01141 hisC histidinol-phos 94.6 0.13 2.9E-06 41.1 6.7 88 14-121 209-297 (346)
75 KOG0256|consensus 94.5 0.3 6.5E-06 42.6 8.9 90 18-122 307-396 (471)
76 PLN02187 rooty/superroot1 94.5 0.37 8E-06 41.2 9.4 99 14-121 275-376 (462)
77 PRK08153 histidinol-phosphate 94.4 0.37 8E-06 39.5 9.0 87 14-121 222-309 (369)
78 PLN03026 histidinol-phosphate 94.3 0.3 6.5E-06 40.3 8.3 89 14-122 239-328 (380)
79 PRK04781 histidinol-phosphate 94.2 0.39 8.4E-06 39.4 8.7 93 13-122 218-311 (364)
80 PRK04870 histidinol-phosphate 94.0 0.11 2.5E-06 41.9 5.0 88 14-121 217-304 (356)
81 PRK06358 threonine-phosphate d 93.7 0.26 5.6E-06 40.2 6.8 91 13-122 211-302 (354)
82 PRK06959 putative threonine-ph 93.6 0.65 1.4E-05 37.8 8.8 87 13-121 196-283 (339)
83 PRK05166 histidinol-phosphate 93.4 0.46 1E-05 38.8 7.7 89 13-121 229-318 (371)
84 PRK03317 histidinol-phosphate 93.1 0.29 6.3E-06 39.8 6.1 85 14-118 227-312 (368)
85 PRK03158 histidinol-phosphate 93.0 0.53 1.1E-05 38.0 7.4 87 14-121 221-308 (359)
86 PRK07392 threonine-phosphate d 92.8 0.53 1.2E-05 38.2 7.3 88 14-121 215-303 (360)
87 PRK14809 histidinol-phosphate 92.8 0.48 1E-05 38.3 6.9 85 13-121 220-305 (357)
88 PRK07908 hypothetical protein; 92.7 0.69 1.5E-05 37.3 7.7 91 14-122 203-294 (349)
89 PRK05839 hypothetical protein; 92.0 1 2.2E-05 37.0 8.0 86 14-122 231-317 (374)
90 PRK14807 histidinol-phosphate 91.9 0.86 1.9E-05 36.9 7.3 87 14-121 212-299 (351)
91 PRK05664 threonine-phosphate d 91.5 0.93 2E-05 36.5 7.2 73 13-101 190-263 (330)
92 PRK04635 histidinol-phosphate 90.8 0.51 1.1E-05 38.3 5.1 90 14-121 213-303 (354)
93 PRK14808 histidinol-phosphate 90.8 2 4.4E-05 34.8 8.5 87 14-121 201-288 (335)
94 PLN02672 methionine S-methyltr 90.4 0.72 1.6E-05 44.2 6.2 90 16-119 912-1004(1082)
95 PRK01688 histidinol-phosphate 90.0 0.56 1.2E-05 38.1 4.6 91 14-121 212-303 (351)
96 PRK02731 histidinol-phosphate 89.4 2.3 5.1E-05 34.3 7.8 87 14-121 224-311 (367)
97 PRK06425 histidinol-phosphate 88.6 1.3 2.9E-05 35.6 5.8 87 14-121 192-279 (332)
98 PRK06225 aspartate aminotransf 88.6 5 0.00011 32.7 9.2 73 14-100 224-297 (380)
99 PRK00950 histidinol-phosphate 88.6 1 2.2E-05 36.2 5.1 69 14-98 222-291 (361)
100 PRK03321 putative aminotransfe 87.5 2.1 4.6E-05 34.3 6.4 88 13-121 214-302 (352)
101 TIGR00707 argD acetylornithine 86.4 2.6 5.7E-05 34.0 6.4 86 14-116 238-324 (379)
102 PRK09275 aspartate aminotransf 85.1 3 6.4E-05 37.0 6.5 38 79-121 405-442 (527)
103 KOG0634|consensus 83.5 4.6 0.0001 35.5 6.8 100 14-121 294-393 (472)
104 TIGR03801 asp_4_decarbox aspar 80.9 5.9 0.00013 35.0 6.7 39 79-122 404-442 (521)
105 PRK01533 histidinol-phosphate 80.8 3.3 7.3E-05 34.0 4.9 87 14-121 221-308 (366)
106 PRK05093 argD bifunctional N-s 79.5 4.2 9.1E-05 33.7 5.1 92 14-121 252-344 (403)
107 PRK08354 putative aminotransfe 74.6 9.3 0.0002 30.4 5.6 66 14-97 181-247 (311)
108 PRK00011 glyA serine hydroxyme 74.5 18 0.00039 29.8 7.5 24 78-101 280-303 (416)
109 cd00610 OAT_like Acetyl ornith 73.8 4.4 9.4E-05 33.0 3.6 75 14-101 259-333 (413)
110 cd00378 SHMT Serine-glycine hy 66.3 63 0.0014 26.3 8.9 40 78-121 276-316 (402)
111 PRK04260 acetylornithine amino 62.9 23 0.00051 28.8 5.8 90 14-119 233-323 (375)
112 COG0079 HisC Histidinol-phosph 60.7 31 0.00066 28.9 6.2 72 14-101 211-283 (356)
113 PF04201 TPD52: Tumour protein 60.4 15 0.00032 28.2 3.8 30 69-98 28-57 (162)
114 PLN02452 phosphoserine transam 60.2 21 0.00046 29.9 5.2 46 48-100 237-285 (365)
115 PRK06777 4-aminobutyrate amino 58.5 20 0.00044 30.2 4.8 90 14-118 266-355 (421)
116 PF11794 HpaB_N: 4-hydroxyphen 58.0 21 0.00046 29.0 4.7 71 18-88 61-134 (264)
117 cd01248 PH_PLC Phospholipase C 56.9 7.6 0.00016 26.9 1.7 31 15-45 82-114 (115)
118 PF03462 PCRF: PCRF domain; I 56.9 33 0.00071 24.1 5.0 34 67-100 7-40 (115)
119 PF12592 DUF3763: Protein of u 55.9 11 0.00023 23.9 2.1 34 73-106 3-36 (57)
120 PRK02627 acetylornithine amino 55.2 26 0.00056 28.4 4.8 46 14-67 250-296 (396)
121 PLN00144 acetylornithine trans 53.9 26 0.00056 29.1 4.6 90 14-121 235-327 (382)
122 PRK12462 phosphoserine aminotr 51.6 40 0.00086 28.5 5.5 48 47-101 234-285 (364)
123 PF03993 DUF349: Domain of Unk 51.1 33 0.00071 21.6 3.9 41 71-111 17-57 (77)
124 COG1168 MalY Bifunctional PLP- 51.0 66 0.0014 27.9 6.7 67 25-100 241-307 (388)
125 cd00186 TOP1Ac DNA Topoisomera 50.8 20 0.00043 30.1 3.5 34 52-85 323-362 (381)
126 PRK12381 bifunctional succinyl 50.0 33 0.00072 28.5 4.7 72 14-101 251-323 (406)
127 PRK04612 argD acetylornithine 49.2 51 0.0011 27.8 5.8 45 14-66 255-300 (408)
128 COG3977 Alanine-alpha-ketoisov 47.9 82 0.0018 27.1 6.7 54 14-74 248-301 (417)
129 PF11172 DUF2959: Protein of u 47.7 27 0.00058 27.6 3.6 17 69-85 95-111 (201)
130 TIGR01365 serC_2 phosphoserine 47.4 48 0.001 28.0 5.3 46 49-101 235-283 (374)
131 PRK13415 flagella biosynthesis 47.4 1.5E+02 0.0032 23.8 7.9 69 31-105 141-218 (219)
132 smart00742 Hr1 Rho effector or 46.3 68 0.0015 19.6 5.3 39 56-94 17-56 (57)
133 PF08565 CDC37_M: Cdc37 Hsp90 46.0 1.3E+02 0.0028 22.8 8.0 51 43-94 113-165 (173)
134 PRK06939 2-amino-3-ketobutyrat 45.8 1.5E+02 0.0033 23.7 7.8 23 79-101 295-317 (397)
135 PRK14724 DNA topoisomerase III 44.6 29 0.00063 33.2 3.9 33 52-84 565-604 (987)
136 PF06290 PsiB: Plasmid SOS inh 43.8 47 0.001 24.9 4.2 52 64-115 3-55 (143)
137 TIGR01057 topA_arch DNA topois 43.4 28 0.00062 31.2 3.5 33 52-84 507-545 (618)
138 PRK09064 5-aminolevulinate syn 42.6 1.3E+02 0.0029 24.6 7.2 22 80-101 299-320 (407)
139 PLN00060 meiotic recombination 42.4 33 0.00072 29.4 3.6 32 57-88 325-356 (384)
140 PRK13580 serine hydroxymethylt 42.3 1.5E+02 0.0033 26.3 7.8 73 18-102 288-360 (493)
141 PRK13701 psiB plasmid SOS inhi 41.7 30 0.00066 25.9 2.9 47 65-111 4-51 (144)
142 cd00617 Tnase_like Tryptophana 41.6 60 0.0013 27.9 5.1 37 80-121 291-327 (431)
143 PRK02936 argD acetylornithine 41.6 70 0.0015 25.9 5.3 14 14-27 235-248 (377)
144 TIGR01051 topA_bact DNA topois 41.0 34 0.00073 30.8 3.6 32 52-83 501-538 (610)
145 PHA00442 host recBCD nuclease 41.0 69 0.0015 20.5 4.0 37 72-111 12-48 (59)
146 PRK05582 DNA topoisomerase I; 40.8 35 0.00075 30.9 3.7 32 52-83 495-532 (650)
147 cd01040 globin Globins are hem 39.6 1.2E+02 0.0025 20.4 6.7 43 52-94 17-72 (140)
148 PRK08173 DNA topoisomerase III 38.8 36 0.00078 32.1 3.6 33 52-84 546-585 (862)
149 COG3691 Uncharacterized protei 38.8 53 0.0011 23.2 3.5 37 19-55 27-63 (98)
150 TIGR01323 nitrile_alph nitrile 38.5 27 0.00059 27.2 2.3 23 53-75 32-54 (185)
151 PHA02599 dsbA double-stranded 38.2 97 0.0021 21.6 4.7 46 52-104 11-56 (91)
152 PF10454 DUF2458: Protein of u 37.8 1.7E+02 0.0037 21.8 7.3 70 33-103 2-74 (150)
153 PF07544 Med9: RNA polymerase 36.5 82 0.0018 20.9 4.2 26 73-99 55-80 (83)
154 PRK06599 DNA topoisomerase I; 36.4 44 0.00096 30.4 3.7 32 52-83 509-546 (675)
155 PF15500 Toxin_39: Putative RN 36.3 36 0.00078 23.7 2.4 33 65-98 44-80 (96)
156 PRK03244 argD acetylornithine 36.3 83 0.0018 25.7 5.0 72 14-101 251-323 (398)
157 KOG3208|consensus 36.0 1.5E+02 0.0033 23.9 6.2 61 33-93 57-119 (231)
158 PRK07219 DNA topoisomerase I; 35.8 43 0.00092 31.2 3.5 33 52-84 516-554 (822)
159 KOG4010|consensus 35.7 1.3E+02 0.0029 23.7 5.7 42 56-97 30-71 (208)
160 PF06194 Phage_Orf51: Phage Co 35.3 26 0.00056 23.8 1.5 21 2-30 14-34 (80)
161 PF06034 DUF919: Nucleopolyhed 34.6 63 0.0014 20.9 3.2 28 62-96 30-57 (62)
162 TIGR00713 hemL glutamate-1-sem 34.6 38 0.00082 28.1 2.7 79 14-102 262-342 (423)
163 PRK13430 F0F1 ATP synthase sub 34.3 1.8E+02 0.004 23.4 6.6 52 37-88 75-133 (271)
164 PRK07179 hypothetical protein; 34.1 1.7E+02 0.0036 24.1 6.5 25 77-101 299-323 (407)
165 TIGR01822 2am3keto_CoA 2-amino 33.5 2.2E+02 0.0047 23.0 7.0 25 77-101 289-313 (393)
166 PF08232 Striatin: Striatin fa 33.5 50 0.0011 24.0 2.9 20 70-89 18-37 (134)
167 PTZ00125 ornithine aminotransf 32.9 1.2E+02 0.0026 24.7 5.4 37 84-121 302-339 (400)
168 TIGR00858 bioF 8-amino-7-oxono 32.9 2.4E+02 0.0052 22.0 7.4 24 78-101 266-289 (360)
169 PRK14973 DNA topoisomerase I; 32.5 53 0.0011 31.4 3.6 34 52-85 506-545 (936)
170 TIGR00743 conserved hypothetic 32.1 74 0.0016 22.3 3.4 39 18-56 23-61 (95)
171 PF03592 Terminase_2: Terminas 31.8 1E+02 0.0022 22.0 4.3 53 44-98 20-72 (144)
172 PRK13723 conjugal transfer pil 31.6 2.3E+02 0.0049 25.0 7.1 57 23-90 88-144 (451)
173 PRK07726 DNA topoisomerase III 31.4 54 0.0012 29.7 3.4 33 52-84 538-573 (658)
174 TIGR00700 GABAtrnsam 4-aminobu 31.1 1.2E+02 0.0025 25.5 5.1 15 14-28 265-279 (420)
175 PRK10534 L-threonine aldolase; 31.1 2.6E+02 0.0057 22.0 9.3 31 86-121 252-282 (333)
176 TIGR03246 arg_catab_astC succi 31.0 1.3E+02 0.0028 24.9 5.4 21 81-101 299-319 (397)
177 PRK05776 DNA topoisomerase I; 30.7 60 0.0013 29.7 3.5 31 52-82 514-550 (670)
178 PRK07220 DNA topoisomerase I; 30.5 63 0.0014 29.8 3.7 33 51-83 506-544 (740)
179 PRK05783 hypothetical protein; 30.4 88 0.0019 21.2 3.6 40 18-57 35-75 (84)
180 COG0803 LraI ABC-type metal io 30.2 98 0.0021 25.1 4.4 51 67-120 156-206 (303)
181 PRK13238 tnaA tryptophanase/L- 29.9 1.1E+02 0.0023 26.5 4.8 29 90-122 325-353 (460)
182 PF02341 RcbX: RbcX protein; 29.3 2.2E+02 0.0047 20.4 5.8 34 53-96 48-81 (111)
183 PRK13824 replication initiatio 28.4 82 0.0018 27.1 3.8 36 76-111 162-200 (404)
184 cd08797 Death_NFkB1_p105 Death 28.3 19 0.0004 24.2 -0.1 30 89-118 1-30 (76)
185 PRK05355 3-phosphoserine/phosp 28.3 1.7E+02 0.0038 24.0 5.7 45 50-101 235-282 (360)
186 PF04508 Pox_A_type_inc: Viral 28.2 89 0.0019 16.4 2.5 20 77-96 1-20 (23)
187 PRK07049 methionine gamma-lyas 28.0 3.1E+02 0.0067 23.3 7.3 64 19-100 247-311 (427)
188 PRK05958 8-amino-7-oxononanoat 27.6 3.1E+02 0.0068 21.7 7.0 22 80-101 290-311 (385)
189 PF04676 CwfJ_C_2: Protein sim 27.5 1.3E+02 0.0029 20.3 4.1 28 51-79 48-75 (98)
190 PRK08088 4-aminobutyrate amino 27.5 1.3E+02 0.0028 25.2 4.8 70 14-95 267-337 (425)
191 COG3636 Predicted transcriptio 27.5 1.4E+02 0.003 21.2 4.2 52 55-109 20-81 (100)
192 smart00638 LPD_N Lipoprotein N 27.3 1.7E+02 0.0036 25.5 5.6 91 19-111 258-364 (574)
193 COG1239 ChlI Mg-chelatase subu 27.3 1.5E+02 0.0033 26.0 5.3 69 26-94 189-264 (423)
194 TIGR03576 pyridox_MJ0158 pyrid 27.1 3.5E+02 0.0076 22.1 8.2 25 18-49 206-230 (346)
195 PRK01278 argD acetylornithine 27.0 1.7E+02 0.0036 23.9 5.3 69 14-93 243-314 (389)
196 PRK06918 4-aminobutyrate amino 27.0 1.3E+02 0.0029 25.5 4.8 15 14-28 287-301 (451)
197 PF02700 PurS: Phosphoribosylf 26.8 95 0.0021 20.6 3.2 37 21-57 36-72 (80)
198 PF07058 Myosin_HC-like: Myosi 26.6 86 0.0019 26.6 3.5 22 73-94 111-132 (351)
199 PF03475 3-alpha: 3-alpha doma 26.4 1.4E+02 0.0031 17.4 4.8 37 44-82 5-41 (47)
200 COG1195 RecF Recombinational D 26.4 1.6E+02 0.0034 25.3 5.1 65 30-100 126-203 (363)
201 PF09720 Unstab_antitox: Putat 26.1 1.1E+02 0.0023 18.4 3.1 29 53-81 2-35 (54)
202 PF15456 Uds1: Up-regulated Du 26.0 1.2E+02 0.0026 21.9 3.8 29 69-97 87-115 (124)
203 PRK12515 RNA polymerase sigma 25.4 1.2E+02 0.0025 22.1 3.8 64 44-107 123-189 (189)
204 PF08544 GHMP_kinases_C: GHMP 25.4 62 0.0013 20.3 2.0 21 24-44 60-80 (85)
205 TIGR02539 SepCysS Sep-tRNA:Cys 24.9 1.5E+02 0.0033 24.1 4.7 26 76-102 264-289 (370)
206 PF01297 TroA: Periplasmic sol 24.9 1.1E+02 0.0024 23.7 3.7 49 68-116 116-170 (256)
207 COG4667 Predicted esterase of 24.8 71 0.0015 26.6 2.7 26 71-97 207-232 (292)
208 PF07540 NOC3p: Nucleolar comp 24.8 1.3E+02 0.0028 20.8 3.6 27 59-85 9-35 (95)
209 TIGR01364 serC_1 phosphoserine 24.8 2.2E+02 0.0048 23.4 5.6 46 49-101 223-271 (349)
210 cd06454 KBL_like KBL_like; thi 24.4 2.8E+02 0.006 21.7 6.0 23 79-101 252-274 (349)
211 PRK11020 hypothetical protein; 24.3 1.9E+02 0.0042 21.0 4.5 35 65-99 26-60 (118)
212 PF10925 DUF2680: Protein of u 24.1 1.9E+02 0.0042 18.2 4.2 28 75-102 5-32 (59)
213 PF08776 VASP_tetra: VASP tetr 23.9 1.7E+02 0.0037 17.4 4.5 25 74-98 7-32 (40)
214 PRK07495 4-aminobutyrate amino 23.8 1.6E+02 0.0035 24.9 4.8 15 14-28 266-280 (425)
215 PTZ00094 serine hydroxymethylt 23.7 2.6E+02 0.0056 23.7 6.0 25 77-101 299-323 (452)
216 PF03872 RseA_N: Anti sigma-E 23.7 90 0.0019 21.0 2.6 18 60-77 18-35 (87)
217 PRK11546 zraP zinc resistance 23.6 2.8E+02 0.006 20.7 5.4 31 73-103 92-122 (143)
218 PF04212 MIT: MIT (microtubule 23.5 1.9E+02 0.0041 17.8 5.0 28 66-93 42-69 (69)
219 cd00611 PSAT_like Phosphoserin 23.5 2.4E+02 0.0051 22.9 5.6 43 51-100 233-278 (355)
220 PF02002 TFIIE_alpha: TFIIE al 23.5 87 0.0019 21.1 2.6 51 43-99 3-53 (105)
221 KOG1891|consensus 23.1 1.5E+02 0.0034 24.2 4.2 37 70-106 232-268 (271)
222 PF12994 DUF3878: Domain of un 22.8 1.3E+02 0.0028 25.3 3.8 68 46-113 190-273 (299)
223 cd02678 MIT_VPS4 MIT: domain c 22.7 2.2E+02 0.0047 18.2 4.3 27 67-93 44-70 (75)
224 PF12411 Choline_sulf_C: Choli 22.7 1.1E+02 0.0025 19.1 2.8 22 87-109 8-29 (54)
225 PRK02948 cysteine desulfurase; 22.7 3E+02 0.0065 22.1 6.0 45 51-101 233-277 (381)
226 PF14048 MBD_C: C-terminal dom 22.7 1.6E+02 0.0035 20.4 3.8 19 79-97 78-96 (96)
227 PF08663 HalX: HalX domain; I 22.7 1E+02 0.0022 20.2 2.7 28 76-103 35-62 (71)
228 PF11859 DUF3379: Protein of u 22.2 2.1E+02 0.0045 23.1 4.8 40 48-88 8-47 (232)
229 smart00352 POU Found in Pit-Oc 22.1 1E+02 0.0023 20.6 2.6 18 76-93 6-23 (75)
230 PF07231 Hs1pro-1_N: Hs1pro-1 21.9 3.9E+02 0.0084 20.8 6.1 38 59-96 92-132 (182)
231 PF01031 Dynamin_M: Dynamin ce 21.9 4.1E+02 0.0089 21.1 7.2 86 19-105 10-104 (295)
232 PF06992 Phage_lambda_P: Repli 21.8 80 0.0017 25.5 2.4 23 66-88 169-191 (233)
233 TIGR02309 HpaB-1 4-hydroxyphen 21.7 2.5E+02 0.0054 24.5 5.6 71 18-88 61-138 (477)
234 PF01496 V_ATPase_I: V-type AT 21.6 2.6E+02 0.0056 25.6 5.9 34 25-58 192-225 (759)
235 cd06450 DOPA_deC_like DOPA dec 21.5 4E+02 0.0087 20.8 6.6 40 77-119 244-284 (345)
236 PF02979 NHase_alpha: Nitrile 21.5 63 0.0014 25.3 1.7 24 54-77 39-62 (188)
237 PF02863 Arg_repressor_C: Argi 21.3 90 0.002 19.9 2.2 21 25-45 49-69 (70)
238 PLN03085 nucleobase:cation sym 21.2 2.4E+02 0.0053 22.6 5.0 69 28-96 82-165 (221)
239 PF06013 WXG100: Proteins of 1 21.0 2.1E+02 0.0045 17.3 7.3 52 36-97 27-78 (86)
240 PHA02616 VP2/VP3; Provisional 21.0 1.6E+02 0.0035 23.6 3.9 65 36-112 35-99 (259)
241 PF00067 p450: Cytochrome P450 20.9 1.9E+02 0.0041 22.6 4.4 67 35-101 259-336 (463)
242 PRK13428 F0F1 ATP synthase sub 20.9 3.3E+02 0.0072 23.5 6.2 52 37-88 247-305 (445)
243 PF07075 DUF1343: Protein of u 20.7 3.7E+02 0.008 22.9 6.3 68 18-85 270-358 (365)
244 PF12108 SF3a60_bindingd: Spli 20.5 1.3E+02 0.0029 16.4 2.4 15 77-91 7-21 (28)
245 cd06453 SufS_like Cysteine des 20.3 3E+02 0.0066 21.9 5.5 24 78-101 272-295 (373)
246 PF03281 Mab-21: Mab-21 protei 20.3 3.9E+02 0.0085 21.0 6.1 79 36-119 193-275 (292)
247 PRK06737 acetolactate synthase 20.2 66 0.0014 21.3 1.4 36 11-46 29-67 (76)
248 COG1828 PurS Phosphoribosylfor 20.1 1.9E+02 0.0042 19.6 3.7 37 21-57 37-73 (83)
249 PRK11915 glycerol-3-phosphate 20.0 1.3E+02 0.0028 27.6 3.6 26 67-92 589-617 (621)
No 1
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-43 Score=294.15 Aligned_cols=120 Identities=41% Similarity=0.666 Sum_probs=114.7
Q ss_pred ccccCCCccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHH
Q psy9326 6 KFLYPNLESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSG 84 (125)
Q Consensus 6 ~~~~~~~~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~ 84 (125)
++++-+--||+| +|||||||+++|++|++.++++.|||+.++|++|||||+|||+||++||+||+||++|++||+.||.
T Consensus 237 ~~lva~S~SKnfgLYgERVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~ 316 (396)
T COG1448 237 ELLVASSFSKNFGLYGERVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQ 316 (396)
T ss_pred cEEEEehhhhhhhhhhhccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 356666667777 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCCCCC
Q psy9326 85 RIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRKF 125 (125)
Q Consensus 85 RI~~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~~q 125 (125)
||++||..|++.|++.+.+++|+||.+|+|||||+|||++|
T Consensus 317 Ri~~mR~~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~~Q 357 (396)
T COG1448 317 RILEMRQALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQ 357 (396)
T ss_pred HHHHHHHHHHHHHHhhCCCcccchHhhcCceeecCCCCHHH
Confidence 99999999999999999999999999999999999999987
No 2
>KOG1411|consensus
Probab=100.00 E-value=3.8e-43 Score=290.90 Aligned_cols=108 Identities=48% Similarity=0.838 Sum_probs=107.1
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L 97 (125)
+|||||||++|||+|++++.+|.||++.++|++|||||.|||+||++||+||+|+++|..|++.|.+||+.||++|++.|
T Consensus 277 LYgERvGa~svvc~~ad~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L 356 (427)
T KOG1411|consen 277 LYGERVGALSVVCKDADEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDAL 356 (427)
T ss_pred hhhhccceeEEEecCHHHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCccccccccceeecCCCCCC
Q psy9326 98 EKLNTPGTWNHITEQIGMFSYTGLNRKF 125 (125)
Q Consensus 98 ~~~~~~~~w~~i~~Q~GMFs~~gLs~~q 125 (125)
++.+.+++|+||++|.||||||||+|+|
T Consensus 357 ~~~gs~~~W~hI~~QIGMF~fTgl~peQ 384 (427)
T KOG1411|consen 357 EKEGSPGNWSHITKQIGMFCFTGLNPEQ 384 (427)
T ss_pred hcCCCCccHHHHHHhhheeeecCCCHHH
Confidence 9999999999999999999999999987
No 3
>KOG1412|consensus
Probab=100.00 E-value=3.8e-42 Score=282.62 Aligned_cols=110 Identities=56% Similarity=0.894 Sum_probs=107.8
Q ss_pred ccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 16 SIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRE 95 (125)
Q Consensus 16 ~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~ 95 (125)
-.+||||||+|+||.+++.....|.|||..++|++|||||++||+||+.||++|+|+++|.+.++.|+.||++||.+|.+
T Consensus 255 fGlYneRvGnltvv~~n~a~i~~v~SQl~lviR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLrd 334 (410)
T KOG1412|consen 255 FGLYNERVGNLTVVVNNPAVIAGVKSQLTLVIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALRD 334 (410)
T ss_pred cccccccccceEEEecChhHHHHHHHHHHHHHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCccccccccceeecCCCCCC
Q psy9326 96 RLEKLNTPGTWNHITEQIGMFSYTGLNRKF 125 (125)
Q Consensus 96 ~L~~~~~~~~w~~i~~Q~GMFs~~gLs~~q 125 (125)
.|..++|||+||||++|.||||||||||.|
T Consensus 335 ~L~aL~TPGtWDHI~~QiGMFSyTGLtp~q 364 (410)
T KOG1412|consen 335 HLVALKTPGTWDHITQQIGMFSYTGLTPAQ 364 (410)
T ss_pred HHHhcCCCCcHHHHHhhccceeecCCCHHH
Confidence 999999999999999999999999999865
No 4
>PLN02397 aspartate transaminase
Probab=99.55 E-value=5.7e-14 Score=117.53 Aligned_cols=111 Identities=47% Similarity=0.825 Sum_probs=102.4
Q ss_pred cccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++. +|.|+|.+++++.+++.++.+.+++..+.+..++++|..++.++..+|+++++.++|.+++++|++++++.|+
T Consensus 267 fSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~ 346 (423)
T PLN02397 267 YAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQ 346 (423)
T ss_pred CcccCCCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367776 8999999998888888888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
.+++.|++.+.++.|+++..|.|||.++.++.
T Consensus 347 ~l~~~L~~~~~~~~~~~~~p~gg~fl~~~l~~ 378 (423)
T PLN02397 347 KLYDALEARGSPGDWSHITKQIGMFSFTGLNK 378 (423)
T ss_pred HHHHHHHhcCCCCCCCcccCCceEEEecCCCH
Confidence 99999999987789999999999999998864
No 5
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.42 E-value=1.5e-12 Score=107.21 Aligned_cols=111 Identities=41% Similarity=0.642 Sum_probs=100.7
Q ss_pred cccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++. +|.|+|.+++++.+++....+.++++...|..|++||...+.++..+|.++++...|.++++.++.++++.|+
T Consensus 244 fSK~~~~~GlRiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~ 323 (396)
T PRK09257 244 FSKNFGLYGERVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQ 323 (396)
T ss_pred cCCcCccccccceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777 6999999999887777777888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
.+++.|++.+.++.|.+...|.|||.++.|++
T Consensus 324 ~l~~~L~~~~~~~~~~~~~p~gg~~~w~~l~~ 355 (396)
T PRK09257 324 LLVEALKAKGPSRDFDFIARQRGMFSYSGLTP 355 (396)
T ss_pred HHHHHHHhcCCCCCcccccccceEEEecCCCH
Confidence 99999999877667888889999999999864
No 6
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.40 E-value=2.3e-12 Score=106.62 Aligned_cols=112 Identities=46% Similarity=0.815 Sum_probs=101.7
Q ss_pred cccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||+|. +|.|+|.+++++.+++.++.+.+++....+..|+++|..++.++..+|++++...+|.++++.+++++++.|.
T Consensus 249 fSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~ 328 (404)
T PTZ00376 249 FSKNMGLYGERIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQ 328 (404)
T ss_pred CCCcccccccccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378887 9999999999888888888888889988999999999999999999999999989999999999999999999
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLNRK 124 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~~ 124 (125)
.++++|++.+.++.|.++..|.|||.+..++.+
T Consensus 329 ~l~~~L~~~~~~~~~~~~~p~gg~f~~~~~~~~ 361 (404)
T PTZ00376 329 LLYDELKALGSPGDWEHIINQIGMFSFTGLTKE 361 (404)
T ss_pred HHHHHHHhcCCCCcccccccCceEEEecCCCHH
Confidence 999999998877779988899999999987643
No 7
>PRK08637 hypothetical protein; Provisional
Probab=98.46 E-value=2e-06 Score=70.84 Aligned_cols=105 Identities=18% Similarity=0.207 Sum_probs=81.3
Q ss_pred cc-ccccCCccceEEEEc---CCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHH
Q psy9326 14 SY-SIPTDERIGNLTLVL---KDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQM 89 (125)
Q Consensus 14 ~~-~~~ygeRvGal~vV~---~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~ 89 (125)
|+ ..++|-|+|.+++-. .+++..+.+...+....+..++++|.....++..+|+|++ |.++++.++..+++.
T Consensus 226 SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~----~~~~~~~~~~~~~~r 301 (388)
T PRK08637 226 TKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHPSQSAVLRALNSPE----FDKEKQEKFQILKER 301 (388)
T ss_pred cccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcHHHHHHHHHhCCHH----HHHHHHHHHHHHHHH
Confidence 44 478999999998654 4555666665555555667788899999999999999874 777778888888887
Q ss_pred HHHHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 90 RRGLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 90 R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+..+.+.|+..+.++.|..+..+.|||.+.-+.
T Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~ 334 (388)
T PRK08637 302 YEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLK 334 (388)
T ss_pred HHHHHHHHHhhCCCCCcccccccceEEEEecCC
Confidence 777788887766666788888899999997664
No 8
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=98.07 E-value=2.9e-05 Score=66.10 Aligned_cols=94 Identities=14% Similarity=0.291 Sum_probs=69.6
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.| +.|-|+|+++. .+++ +...+..+ +.|+.+|.....+++.+|+|++....| ++..+.|+.+.|+.
T Consensus 278 SK~fg~~GlRvG~ivs--~n~~----l~~~~~~~--~~~~~~s~~~q~~~~~~L~d~~~~~~~---l~~~r~~l~~~~~~ 346 (447)
T PLN02607 278 SKDLGLPGFRVGTIYS--YNDK----VVTTARRM--SSFTLVSSQTQHLLASMLSDEEFTENY---IRTNRERLRKRYEM 346 (447)
T ss_pred hhcCCCCcceEEEEEE--cCHH----HHHHHHHH--hhcCCCCHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHHHH
Confidence 5667 59999998765 3332 33333333 346677778899999999998865555 45678899999999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+. .++..+-|||.+..|+
T Consensus 347 ~~~~L~~~gi----~~~~~~ag~fvw~~L~ 372 (447)
T PLN02607 347 IVQGLRRAGI----ECLKGNAGLFCWMNLS 372 (447)
T ss_pred HHHHHHhCCC----CcccCCeeEEEEEEch
Confidence 9999998653 4566788999998875
No 9
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=97.87 E-value=0.00013 Score=60.22 Aligned_cols=99 Identities=9% Similarity=0.136 Sum_probs=68.1
Q ss_pred ccc-cccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYS-IPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~-~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||+ .++|.|+|.+++-.++ .....+...+..+... ..+++.....++..+|.+. . .+.++.++.++++.|+.
T Consensus 239 SK~~~~~GlRiG~iv~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~q~a~~~~l~~~--~---~~~l~~~~~~~~~~r~~ 311 (401)
T TIGR01264 239 AKRWLVPGWRLGWIIIHDRR-GILRDIRDGLVKLSQR-ILGPCTIVQGALPSILLRT--P---QEYFDGTLSVLESNAML 311 (401)
T ss_pred cccCCCccceEEEEEecCcc-hhHHHHHHHHHHHhhc-cCCCCcHHHHHHHHHHHhC--c---HHHHHHHHHHHHHHHHH
Confidence 666 7899999987753222 2333445555555443 3445566777788888651 1 24466677888888999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++. ++ |.++..+.|||.+..++
T Consensus 312 l~~~L~~~--~~-~~~~~p~~g~f~~~~~~ 338 (401)
T TIGR01264 312 CYGALAAV--PG-LRPVMPSGAMYMMVGIE 338 (401)
T ss_pred HHHHHHhC--CC-CcccCCCeeeEEEEEec
Confidence 99999875 44 88788899999999864
No 10
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=97.87 E-value=9.3e-05 Score=59.34 Aligned_cols=94 Identities=22% Similarity=0.339 Sum_probs=75.0
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|.|+|.+.+ .+ .+.+++....+...+ |..++.++..++.++.+... ++++++.++++.|..
T Consensus 220 SK~~g~~GlRvG~i~~-~~------~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~~~~~l~~~~~~ 287 (363)
T PF00155_consen 220 SKSFGLPGLRVGYIVA-PP------ELIERLRRFQRSGLS--SSPMQAAAAAALSDPELVEK---WLEELRERLRENRDL 287 (363)
T ss_dssp TTTTTSGGGTEEEEEE-EH------HHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred cccccccccccccccc-hh------hhhhhhhhccccccc--cchhhHHHHHhhhccccccc---ccccchhhHHHHHHH
Confidence 5666 58999999988 22 556667777765555 88889999999998886555 677788899999999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
|.+.|++. .|.....+.|+|.+..+..
T Consensus 288 l~~~L~~~----~~~~~~~~~~~~~~~~~~~ 314 (363)
T PF00155_consen 288 LREALEEI----GITVLPPEAGFFLWVRLDP 314 (363)
T ss_dssp HHHHHHHT----TSEEEHHSBSSEEEEEESH
T ss_pred HHHHHHHh----hhheeeccCccEEEEEccc
Confidence 99999877 5888888999999887653
No 11
>PRK06108 aspartate aminotransferase; Provisional
Probab=97.72 E-value=0.00028 Score=57.16 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=67.0
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|.|+|.+.+ ++ .+...+.......++++|..+...+...|.+. .+.++.+++++++.|+.
T Consensus 231 SK~~g~~G~RiG~~~~---~~----~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~------~~~~~~~~~~~~~~~~~ 297 (382)
T PRK06108 231 SKNWAMTGWRLGWLVA---PP----ALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG------EDFVAELVARLRRSRDH 297 (382)
T ss_pred hhhccCcccceeeeeC---CH----HHHHHHHHHHHhcccCCChHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHH
Confidence 5666 57999999775 22 23334444445566778888888888888763 23356778899999999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++. ++ |..+..+.|||.+..+.
T Consensus 298 l~~~L~~~--~~-~~~~~p~~g~~~~~~l~ 324 (382)
T PRK06108 298 LVDALRAL--PG-VEVAKPDGAMYAFFRIP 324 (382)
T ss_pred HHHHHHhC--CC-CcccCCCeeEEEEEeCC
Confidence 99999865 33 77777788999887664
No 12
>PLN02231 alanine transaminase
Probab=97.68 E-value=0.00036 Score=61.01 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=74.5
Q ss_pred cccc--ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCH----hhHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI--PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNP----RLYDQWKQCIETMSGRIK 87 (125)
Q Consensus 14 ~~~~--~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp----~L~~~W~~EL~~m~~RI~ 87 (125)
||.+ ++|-|+|.+.+...+++..+.+.. +. ..-.++|..+..++..++++| .-..+|.+|++.+++.++
T Consensus 350 SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k----~~-~~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~ 424 (534)
T PLN02231 350 SKGYYGECGKRGGYMEVTGFTSDVREQIYK----VA-SVNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLA 424 (534)
T ss_pred CcccccCCccceEEEEEecCCHHHHHHHHH----HH-hhhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 6655 489999999887656555554433 22 223466778888899999875 356789999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCccccccccceeecC
Q psy9326 88 QMRRGLRERLEKLNTPGTWNHITEQIGMFSYTG 120 (125)
Q Consensus 88 ~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~g 120 (125)
+.|..+++.|.+. +| +....-+-|||.+..
T Consensus 425 ~r~~~l~~~L~~~--~g-i~~~~p~Ggfylw~~ 454 (534)
T PLN02231 425 RRAKTLEDALNSL--EG-VTCNKAEGAMYLFPR 454 (534)
T ss_pred HHHHHHHHHHhcC--CC-ceecCCCeeeEEecc
Confidence 9999999999865 33 777778999999933
No 13
>PTZ00377 alanine aminotransferase; Provisional
Probab=97.60 E-value=0.00051 Score=58.53 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=72.3
Q ss_pred cccccc--cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCH----hhHHHHHHHHHHHHHHH
Q psy9326 13 ESYSIP--TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNP----RLYDQWKQCIETMSGRI 86 (125)
Q Consensus 13 ~~~~~~--ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp----~L~~~W~~EL~~m~~RI 86 (125)
-||.+. .|-|+|.+++...+++ +..++..+.. .+.+++..+..++..+|+++ ...+.|.++++.++.++
T Consensus 297 ~SK~~~~~~GlRiG~~~~~~~p~~----li~~l~~~~~-~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 371 (481)
T PTZ00377 297 TSKGIIGECGRRGGYFELTNIPPE----VREQIYKLAS-INLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSL 371 (481)
T ss_pred CCcccccCCcCceEEEEEeCCCHH----HHHHHHHHhh-eecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHH
Confidence 356543 7999999876543333 3444444443 34357778888999999764 34567999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecC
Q psy9326 87 KQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTG 120 (125)
Q Consensus 87 ~~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~g 120 (125)
++.|..+.+.|++. +| |.....+-|||.+.-
T Consensus 372 ~~rr~~l~~~L~~~--~g-~~~~~p~gg~fl~~~ 402 (481)
T PTZ00377 372 KRRAELLTDELNKI--EG-VSCQPVEGAMYAFPR 402 (481)
T ss_pred HHHHHHHHHHHhcC--CC-cEeecCCeeEEEEee
Confidence 99999999999865 33 777778889999843
No 14
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=97.55 E-value=0.00046 Score=58.97 Aligned_cols=94 Identities=19% Similarity=0.318 Sum_probs=67.3
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.| +.|-|+|.++ ++++.. ...+... ..++.+|.....++..+|+|++..+.| ++.++.++++.|+.
T Consensus 271 SK~~~l~GlRiG~li--~~~~~l----~~~~~~~--~~~~~~s~~~Q~a~~~~L~~~~~~~~~---l~~~~~~l~~rr~~ 339 (468)
T PLN02450 271 SKDLGLPGFRVGAIY--SNDEMV----VSAATKM--SSFGLVSSQTQYLLSALLSDKKFTKNY---LEENQKRLKQRQKK 339 (468)
T ss_pred cccCCCCCccEEEEE--ECCHHH----HHHHHHH--hhcCCCCHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHHHH
Confidence 6777 5999999874 443322 2233333 245556778899999999998754444 45568899999999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+ +..+..+-|||.+.-|+
T Consensus 340 l~~~L~~~g----i~~~~~~~g~flwi~l~ 365 (468)
T PLN02450 340 LVSGLEAAG----IKCLKSNAGLFCWVDMR 365 (468)
T ss_pred HHHHHHHcC----CcccCCCceEEEEEEch
Confidence 999998864 55667789999987764
No 15
>PLN02368 alanine transaminase
Probab=97.45 E-value=0.001 Score=56.06 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=72.7
Q ss_pred ccccc--ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHh----hHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI--PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPR----LYDQWKQCIETMSGRI 86 (125)
Q Consensus 13 ~~~~~--~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~----L~~~W~~EL~~m~~RI 86 (125)
-||+| +.|-|+|.+.+...+++. ...+..+....|+ ++..+...+...|++++ -.+.|.+|+++|++.+
T Consensus 289 fSK~~~~~~GlRiGy~i~~~~~~~l----i~~~~~~~~~~~~-~~~~~Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 363 (407)
T PLN02368 289 VSKGYWGECGQRGGYFEMTNIPPKT----VEEIYKVASIALS-PNVSGQIFMGLMVNPPKPGDISYDQFVRESKGILESL 363 (407)
T ss_pred CCcccccCCccceEEEEEeCCCHHH----HHHHHHHhcccCC-CCcHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHH
Confidence 37876 499999988764223333 3334444334454 78788888899998764 2346899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCccccccccceeecC
Q psy9326 87 KQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTG 120 (125)
Q Consensus 87 ~~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~g 120 (125)
++.|..+++.|.+. +| ++...-|-|||.|.-
T Consensus 364 ~~rr~~~~~~L~~~--~g-~~~~~P~Gafy~~~~ 394 (407)
T PLN02368 364 RRRARMMTDGFNSC--KN-VVCNFTEGAMYSFPQ 394 (407)
T ss_pred HHHHHHHHHHHhCC--CC-eEeCCCCeeeEeccC
Confidence 99999999999875 33 777778999999853
No 16
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=97.44 E-value=0.0015 Score=54.55 Aligned_cols=95 Identities=14% Similarity=0.115 Sum_probs=67.0
Q ss_pred cccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 13 ~~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
-||+|..|-|+|.++ ++ ++.. ..+.........++|.....++...|++++ |.+-++.++..+++.|+.
T Consensus 280 fSK~~~~GlRiG~~i--~~-~~~~----~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~----~~~~l~~~~~~~~~~r~~ 348 (431)
T PRK15481 280 VSKALGPDLRLAFVA--SD-SATS----ARLRLRLNSGTQWVSHLLQDLVYACLTDPE----YQARLAQARLFYAQRRQK 348 (431)
T ss_pred eccccCCCceeEEEe--CC-HHHH----HHHHHHHhccccCCCHHHHHHHHHHHhCcc----HHHHHHHHHHHHHHHHHH
Confidence 377788999999543 32 3333 334333232224567788899999999865 444577788889998999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+ +.+...+.|||.+..++
T Consensus 349 ~~~~L~~~~----~~~~~p~gg~f~~~~l~ 374 (431)
T PRK15481 349 LARALQQYG----IAIPSPGDGLNLWLPLD 374 (431)
T ss_pred HHHHHHHcC----CccccCCCeEEEEEECC
Confidence 999998763 55567789999998875
No 17
>PRK05957 aspartate aminotransferase; Provisional
Probab=97.38 E-value=0.0017 Score=53.53 Aligned_cols=95 Identities=18% Similarity=0.149 Sum_probs=62.7
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||.+ +.|.|+|.+++ + +.+..++.........++|.....++..+|+++. .|.++ ..+++++.|+
T Consensus 231 ~SK~~g~~GlRiG~~~~---~----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~~~~---~~~~~~~~r~ 297 (389)
T PRK05957 231 LSKAYGFASWRIGYMVI---P----IHLLEAIKKIQDTILICPPVVSQYAALGALQVGK---SYCQQ---HLPEIAQVRQ 297 (389)
T ss_pred chhhccCccceeEEEec---C----HHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh---HHHHH---HHHHHHHHHH
Confidence 35667 69999999885 2 2345556666666667788899999999998743 23222 2334677788
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+.+.|++. ++-+.....+-|||.++-++
T Consensus 298 ~l~~~L~~~--~~~~~~~~~~gg~~~~~~~~ 326 (389)
T PRK05957 298 ILLKSLGQL--QDRCTLHPANGAFYCFLKVN 326 (389)
T ss_pred HHHHHHHhc--CCCccccCCCeeEEEEEeCC
Confidence 899999864 23234334566888876553
No 18
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=97.31 E-value=0.0024 Score=53.09 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=64.7
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++ +.|.|+|.+++..+.. ..+.+...+..+....| ++|.....++...|.+. .+.| ++.++.++++.|.
T Consensus 247 fSK~~~~pGlRlG~~i~~~p~~-~~~~~~~~~~~~~~~~~-~~~~~~q~a~~~~l~~~--~~~~---~~~~~~~~~~~r~ 319 (412)
T PTZ00433 247 TAKNLVVPGWRLGWLLLVDPHG-NGGDFLDGMKRLGMLVC-GPCSVVQAALGEALLNT--PQEH---LEQIVAKLEEGAM 319 (412)
T ss_pred chhhcCCCCeeEEEEEEeCCcc-cHHHHHHHHHHHhhccC-CCChHHHHHHHHHHhcC--cHHH---HHHHHHHHHHHHH
Confidence 37778 8999999988743322 22345555655433334 45555666666666642 2345 4556677778899
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.|.+.|++.. .+..+..+.|+|.+..|.
T Consensus 320 ~l~~~L~~~~---~~~~~~p~gg~f~~~~l~ 347 (412)
T PTZ00433 320 VLYNHIGECI---GLSPTMPRGSMFLMSRLD 347 (412)
T ss_pred HHHHHHhcCC---CCcccCCCeeEEEEEEec
Confidence 9999998642 256667788999987654
No 19
>PRK08068 transaminase; Reviewed
Probab=97.29 E-value=0.0024 Score=52.48 Aligned_cols=91 Identities=13% Similarity=0.255 Sum_probs=57.5
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCC-CcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSN-PPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~-PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
||+| +.|.|+|.++ + +++ +...+.......+.+ +|.....++..+++++ +.++.+++++++.|.
T Consensus 239 SK~~g~~GlRiG~~~--~-~~~----l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~-------~~~~~~~~~~~~~r~ 304 (389)
T PRK08068 239 SKTFNMAGWRVAFAV--G-NES----VIEAINLLQDHLFVSLFGAIQDAAIEALLSDQ-------SCVAELVARYESRRN 304 (389)
T ss_pred hhccCCccceeEeEe--c-CHH----HHHHHHHHHhhccCCCChHHHHHHHHHHhCcH-------HHHHHHHHHHHHHHH
Confidence 7788 7999999985 2 333 333444444443333 3333344444444443 346677888899899
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+.+.|++.+ |.....+-|+|.+.-+.
T Consensus 305 ~~~~~L~~~g----~~~~~~~g~~~~~v~~~ 331 (389)
T PRK08068 305 AFISACREIG----WEVDAPKGSFFAWMPVP 331 (389)
T ss_pred HHHHHHHHCC----CcccCCCeeEEEEEECC
Confidence 9999998763 65555677888777654
No 20
>PRK09148 aminotransferase; Validated
Probab=97.27 E-value=0.0024 Score=53.04 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=61.5
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+. .|-|+|.++. +++ +...+..+....-.+++.....++..+|+++ .+.++.++..+++.|..
T Consensus 237 SK~~~~pGlR~G~~v~---~~~----~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~~------~~~~~~~~~~~~~~r~~ 303 (405)
T PRK09148 237 SKTFSMAGWRMGFAVG---NER----LIAALTRVKSYLDYGAFTPIQVAATAALNGP------QDCIAEMRELYKKRRDV 303 (405)
T ss_pred ccccCCcchheeeeeC---CHH----HHHHHHHHHHHhccCCChHHHHHHHHHHhCc------HHHHHHHHHHHHHHHHH
Confidence 66674 9999999962 333 3344544433322234445667778888764 23455677788888999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
+.+.|++.+ |..+..+-|||.+..+.+
T Consensus 304 l~~~L~~~~----~~~~~p~~g~f~~~~l~~ 330 (405)
T PRK09148 304 LVESFGRAG----WDIPPPAASMFAWAPIPE 330 (405)
T ss_pred HHHHHHHcC----CccCCCCeeEEEEEECCC
Confidence 999998753 555567899999987653
No 21
>PRK06855 aminotransferase; Validated
Probab=97.25 E-value=0.0032 Score=53.00 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=67.3
Q ss_pred cccc-ccCCccceEEEEcCCC-CcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDK-SHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~-~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
||++ +.|-|+|.+++-.... .....+...+..... ....+|......+...|.+++ |.+-+++++..+++.|.
T Consensus 242 SK~~~~pGlRiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~~~l~~~~----~~~~~~~~~~~~~~r~~ 316 (433)
T PRK06855 242 SKELPWPGSRCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIPRIMSHPE----YKNYLKERNKRYEKRSN 316 (433)
T ss_pred ccccCCCcceEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHHHhhcCCc----HHHHHHHHHHHHHHHHH
Confidence 7888 6999999877643221 122233333333222 233567778888899998765 34455566778888788
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
.+.+.|.+. ++ |.....+-|||.++-|.+
T Consensus 317 ~~~~~L~~~--~~-~~~~~p~gg~~~w~~l~~ 345 (433)
T PRK06855 317 IAYEKLKDV--PG-LKVNRTNGAFYMTVVFED 345 (433)
T ss_pred HHHHHHhcC--CC-eeccCCCeeEEEeecccc
Confidence 888888754 44 666667889999988764
No 22
>PRK07550 hypothetical protein; Provisional
Probab=97.23 E-value=0.0036 Score=51.30 Aligned_cols=92 Identities=24% Similarity=0.409 Sum_probs=63.9
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+. .|.|+|.++. + +.+.+++.........++|..++.++..+|++ ...|.+ .++..+++.|+.
T Consensus 235 SK~~g~~G~RiG~i~~--~-----~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~---~~~~~~---~~~~~~~~~~~~ 301 (386)
T PRK07550 235 SKSYALTGHRVGAVVA--S-----PARIAEIEKFMDTVAICAPRIGQIAVAWGLPN---LADWRA---GNRAEIARRRDA 301 (386)
T ss_pred hhhccCcccceEeeec--C-----HHHHHHHHHHHhhcccCCCcHHHHHHHHHhcc---HHHHHH---HHHHHHHHHHHH
Confidence 45564 8999997774 2 23455566666666778899999999999975 234544 456778888889
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|... + .|. +..+.|+|.++-+.
T Consensus 302 l~~~L~~~--~-~~~-~~~~g~~~~~~~~~ 327 (386)
T PRK07550 302 FRAVFARL--P-GWE-LLASGAYFAYVRHP 327 (386)
T ss_pred HHHHHHhC--C-Cce-eCCCceEEEEecCC
Confidence 99999875 2 254 33567888887554
No 23
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=97.23 E-value=0.0042 Score=50.49 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=60.3
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++ +.|.|+|.++ + +++ +...+.........++|...+.++..+|.+++ | ++.++.+++..|.
T Consensus 221 ~SK~~~~~GlRiG~i~--~-~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~---~~~~~~~~~~~~~ 286 (364)
T PRK07865 221 LSKQSNLAGYRAGFVA--G-DPA----LVAELLEVRKHAGMMVPAPVQAAMVAALGDDA----H---VREQRERYARRRA 286 (364)
T ss_pred chhccCCCceeeEEEe--c-CHH----HHHHHHHHHHhcCCCcCHHHHHHHHHHhCCHH----H---HHHHHHHHHHHHH
Confidence 46777 8999999753 3 333 33444444444333456667788888888732 3 3456677777788
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+.+.|++.| |.....+.|||.+..+.
T Consensus 287 ~l~~~L~~~g----~~~~~~~~~~~~~~~~~ 313 (364)
T PRK07865 287 VLRPALEAAG----FRVDHSEAGLYLWATRG 313 (364)
T ss_pred HHHHHHHHcC----CcccCCCccEEEEEeCC
Confidence 8999998753 55445678898877653
No 24
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=97.19 E-value=0.0039 Score=48.72 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=70.5
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
+|.+. .|.|+|++.+ +++ .+...+....+..+++||.+++..+...|.... ++.+.++.++.+.++.
T Consensus 203 ~K~~~~~g~~~G~i~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~ 270 (350)
T cd00609 203 SKTFGLPGLRIGYLIA--PPE----ELLERLKKLLPYTTSGPSTLSQAAAAAALDDGE------EHLEELRERYRRRRDA 270 (350)
T ss_pred ccccCCcccceEEEec--CHH----HHHHHHHHHHHhcccCCChHHHHHHHHHHhCcH------HHHHHHHHHHHHHHHH
Confidence 34454 6778887754 322 466667777888889999999999999998655 6678888999999999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
|.+.|++.+.... .....|+|.++.+..
T Consensus 271 l~~~L~~~~~~~~---~~~~~g~~~~~~~~~ 298 (350)
T cd00609 271 LLEALKELGPLVV---VKPSGGFFLWLDLPE 298 (350)
T ss_pred HHHHHHhcCCccc---cCCCccEEEEEecCC
Confidence 9999987654321 355678888877654
No 25
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=97.09 E-value=0.0049 Score=53.36 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=66.7
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHH-HHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWK-QCIETMSGRIKQMRR 91 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~-~EL~~m~~RI~~~R~ 91 (125)
||.| +.|-|+|.++. .++ .+...+... ..+..++...+.+++.+|+|++ |. +=+..++.++...|+
T Consensus 278 SK~~glpGlRvG~li~--~~~----~l~~~~~~~--~~~~~vs~~~Q~a~~~~L~d~~----~~~~~l~~~r~~l~~r~~ 345 (496)
T PLN02376 278 SKDMGLPGFRVGIVYS--FND----SVVSCARKM--SSFGLVSSQTQLMLASMLSDDQ----FVDNFLMESSRRLGIRHK 345 (496)
T ss_pred cccCCCCcceEEEEEE--CCH----HHHHHHHHH--hhcCCCCHHHHHHHHHHhCChh----HHHHHHHHHHHHHHHHHH
Confidence 6778 79999999765 332 233333332 2355677788899999999876 53 336777889999899
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+.+.|++.+ +..+..+-|+|.+.-|.
T Consensus 346 ~l~~~L~~~g----i~~~~~~aG~flwi~l~ 372 (496)
T PLN02376 346 VFTTGIKKAD----IACLTSNAGLFAWMDLR 372 (496)
T ss_pred HHHHHHHHCC----CcccCCCceEEEEEEch
Confidence 9999998753 55666788899998764
No 26
>PRK08636 aspartate aminotransferase; Provisional
Probab=97.03 E-value=0.0073 Score=49.98 Aligned_cols=93 Identities=17% Similarity=0.201 Sum_probs=58.0
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHh-hcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRA-MYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMR 90 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~-~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R 90 (125)
-||.| +.|-|+|.++ + +++..+. +..+... .++.++ -...++..++++. ..| ++.++..+.+.|
T Consensus 246 ~SK~~~~~GlRiG~iv--~-~~~li~~----~~~~~~~~~~~~~~-~~q~~~~~~~~~~---~~~---~~~~~~~~~~~~ 311 (403)
T PRK08636 246 LSKSYNMAGWRVGFVV--G-NKKLVGA----LKKIKSWLDYGMFT-PIQVAATIALDGD---QSC---VEEIRETYRKRR 311 (403)
T ss_pred cccccCCccceeeeee--C-CHHHHHH----HHHHHHHhcccCCh-HHHHHHHHHHhCc---HHH---HHHHHHHHHHHH
Confidence 37888 8999999954 3 3333333 3333322 233332 2333444555432 335 455677788888
Q ss_pred HHHHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 91 RGLRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 91 ~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
+.+.+.|++.+ |.+...+.|||.++.|++
T Consensus 312 ~~l~~~L~~~~----~~~~~p~~g~~~~~~l~~ 340 (403)
T PRK08636 312 DVLIESFANAG----WELQKPRASMFVWAKIPE 340 (403)
T ss_pred HHHHHHHHHCC----CcccCCCcceEEEEECCC
Confidence 99999998752 666677899999998864
No 27
>PRK08912 hypothetical protein; Provisional
Probab=96.90 E-value=0.0096 Score=48.77 Aligned_cols=91 Identities=14% Similarity=0.169 Sum_probs=60.2
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHh-hcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRA-MYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~-~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
||.+. +|.|+|.+++ +++. ...+...... .|+.||...+.++..+.++++ |. ++++.++++.|+
T Consensus 231 SK~~g~~GlRiG~~~~---~~~~----~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~---~~~~~~~~~~~~ 296 (387)
T PRK08912 231 GKIFSLTGWKVGFVCA---APPL----LRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDD----YF---EGMRADLARSRD 296 (387)
T ss_pred hhhccCcCceeEEEec---CHHH----HHHHHHHHhhccccCChHHHHHHHHHHhCCHH----HH---HHHHHHHHHHHH
Confidence 57775 9999998864 2223 3334444333 477777776666666655433 43 457788888899
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+++.|+..+ +.....+.|+|.+.-++
T Consensus 297 ~l~~~L~~~g----~~~~~~~g~~~l~~~l~ 323 (387)
T PRK08912 297 RLAAGLRRIG----FPVLPSQGTYFLTVDLA 323 (387)
T ss_pred HHHHHHHhCC----CcccCCCcceEEEeccc
Confidence 9999998763 55555677888877664
No 28
>PRK12414 putative aminotransferase; Provisional
Probab=96.87 E-value=0.0093 Score=49.06 Aligned_cols=91 Identities=13% Similarity=0.123 Sum_probs=60.0
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++ +.|.|+|.+++ + +++...+..+....-.+++.....++..+|.++. .|. .++..+++.|.
T Consensus 233 fSK~~~~pGlRiG~~v~--~-----~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~~---~~~----~~~~~~~~~r~ 298 (384)
T PRK12414 233 FGKSYHVTGWRVGYCLA--P-----AELMDEIRKVHQFMVFSADTPMQHAFAEALAEPA---SYL----GLGAFYQRKRD 298 (384)
T ss_pred ccccccCccceEEEEec--C-----HHHHHHHHHHHhheecCCCcHHHHHHHHHhcCCh---HHH----HHHHHHHHHHH
Confidence 47888 79999999874 2 2233445554443333456667778889998765 232 35666777788
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
.+++.|++.+ |.....+-|+|.+.-+
T Consensus 299 ~l~~~L~~~g----~~~~~~~gg~~~~~~~ 324 (384)
T PRK12414 299 LLARELAGSR----FELLPSEGSFFMLARF 324 (384)
T ss_pred HHHHHHHhCC----CeecCCCcceEEEEcc
Confidence 8999998753 5555567788877544
No 29
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=96.84 E-value=0.012 Score=48.75 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=58.5
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHH-HHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQC-IETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~E-L~~m~~RI~~~R~~ 92 (125)
||+.+.|-|+|.++ + +++ +...+.........++|..+..++...|++.++.+.+.++ .+.++.|...+++.
T Consensus 248 SK~~~pGlRiG~~i--~-~~~----l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~ 320 (416)
T PRK09440 248 SKLGLPGVRCGIVI--A-DEE----IIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIAL 320 (416)
T ss_pred cccCCCcceEEEEe--C-CHH----HHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999754 3 333 3333444433333467888999999999998755544443 33344444444444
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
|.+.|. ...+..+..+-|+|-+.-+.
T Consensus 321 L~~~l~----~~~~~~~~p~gg~fiw~~~~ 346 (416)
T PRK09440 321 LRRYLP----DEPCLIHKPEGAIFLWLWFK 346 (416)
T ss_pred HHHhcc----cCCeEEecCCCceEEEEECC
Confidence 433332 12244455677899887654
No 30
>PRK07681 aspartate aminotransferase; Provisional
Probab=96.83 E-value=0.014 Score=48.26 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=61.0
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|-|+|.++ + +++.. ..+.......-.+++.....++..+|.+.. .|.+ .++.++++.|..
T Consensus 238 SK~~~~~GlRiG~~i--~-~~~l~----~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~---~~~~---~~~~~~~~~~~~ 304 (399)
T PRK07681 238 SKSYSLAGSRIGYMI--G-NEEIV----RALTQFKSNTDYGVFLPIQKAACAALRNGA---AFCE---KNRGIYQERRDT 304 (399)
T ss_pred ccccCCccceeEEEe--c-CHHHH----HHHHHHHhhcccCCCHHHHHHHHHHHhCcH---HHHH---HHHHHHHHHHHH
Confidence 6778 6999999985 3 33333 334444443333455566777888888753 3544 446677888888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+ |.....+.|+|.+.-++
T Consensus 305 l~~~L~~~g----~~~~~p~~g~f~~~~l~ 330 (399)
T PRK07681 305 LVDGFRTFG----WNVDKPAGSMFVWAEIP 330 (399)
T ss_pred HHHHHHHCC----CcccCCCeeeEEEEECC
Confidence 999998753 55556678999887665
No 31
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=96.83 E-value=0.012 Score=48.66 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=64.0
Q ss_pred ccc-cccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYS-IPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~-~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||+ .+.|.|+|.+++..++.-..+.+...+...... ..+|+.....++..+|.+. +..-++..++++.+.|..
T Consensus 240 SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~ 313 (403)
T TIGR01265 240 SKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNLLQR-ILGPATIVQGALPDILENT-----PQEFFDGKISVLKSNAEL 313 (403)
T ss_pred ccccCCCcceEEEEEEeCchhhhHHHHHHHHHHHhhh-hcCCChHHHHHHHHHHHhC-----hHHHHHHHHHHHHHHHHH
Confidence 677 589999998776433222223344445555443 3456777778888888642 233344556667777888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|+.. ++ +.....+-|+|.+.-++
T Consensus 314 l~~~L~~~--~~-~~~~~p~~g~f~~~~~~ 340 (403)
T TIGR01265 314 CYEELKDI--PG-LVCPKPEGAMYLMVKLE 340 (403)
T ss_pred HHHHHhcC--CC-ceecCCCceeEEEEecc
Confidence 99999764 33 55455778999988764
No 32
>PRK09265 aminotransferase AlaT; Validated
Probab=96.83 E-value=0.013 Score=48.36 Aligned_cols=100 Identities=16% Similarity=0.240 Sum_probs=62.7
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|-|+|.+++- .+++.++.+...+..+ .....+++..+..++..+|.+.+-...+..+ ..++.+.|..
T Consensus 239 SK~~~~pGlRiG~~v~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~----~~~~~~~r~~ 312 (404)
T PRK09265 239 SKAYRVAGFRVGWMVLS-GPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILP----GGRLYEQRDR 312 (404)
T ss_pred hhhccCcccceEEEEEe-CchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHH----HHHHHHHHHH
Confidence 6778 889999986642 3333334444444433 2334467777888888888765422233322 2345566888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++. ++ |..+..+-|||.+.-+.
T Consensus 313 ~~~~L~~~--~~-~~~~~p~~g~~l~~~~~ 339 (404)
T PRK09265 313 AWELLNAI--PG-VSCVKPKGALYAFPKLD 339 (404)
T ss_pred HHHHHhcC--CC-CcccCCCcceEEEEEec
Confidence 88888764 33 66677788999986554
No 33
>PRK08363 alanine aminotransferase; Validated
Probab=96.82 E-value=0.0089 Score=49.22 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=62.5
Q ss_pred ccc-cccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYS-IPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~-~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||. .+.|-|+|.+++..+ ++.++.+...+....+..|+ ++..+..++..+|.+. .+|.+ +++.++++.|..
T Consensus 236 SK~~~~~GlRiG~~~~~~~-~~~~~~l~~~~~~~~~~~~~-~s~~~q~~~~~~l~~~---~~~l~---~~~~~~~~~~~~ 307 (398)
T PRK08363 236 SKVYFATGWRLGYIYFVDP-EGKLAEVREAIDKLARIRLC-PNTPAQFAAIAGLTGP---MDYLE---EYMKKLKERRDY 307 (398)
T ss_pred hhccCCccceEEEEEEeCc-HHHHHHHHHHHHHHhccccc-CChHHHHHHHHHHhCC---hHHHH---HHHHHHHHHHHH
Confidence 556 578999998776433 34566666666655554553 4555666667777642 23444 456777888888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++. ++ |.....+-|+|.+.-+
T Consensus 308 l~~~L~~~--~~-~~~~~p~g~~~~~~~l 333 (398)
T PRK08363 308 IYKRLNEI--PG-ISTTKPQGAFYIFPRI 333 (398)
T ss_pred HHHHHhcC--CC-CEecCCCeEEEEEEEe
Confidence 88888764 33 6655567788877544
No 34
>PRK09082 methionine aminotransferase; Validated
Probab=96.81 E-value=0.0053 Score=50.47 Aligned_cols=92 Identities=9% Similarity=0.057 Sum_probs=62.0
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ ++|-|+|.+.. + +++...++...+.+-.++|...+.+++.++.+. ..| ++.++..+++.|..
T Consensus 235 SK~~~~~G~RiG~iv~--~-----~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~---~~~~~~~~~~~~~~ 301 (386)
T PRK09082 235 GKTYHVTGWKVGYCVA--P-----AALSAEFRKVHQYNTFTVNTPAQLALADYLRAE---PEH---YLELPAFYQAKRDR 301 (386)
T ss_pred hhhccchhhhhhhhhC--C-----HHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCC---hHH---HHHHHHHHHHHHHH
Confidence 6777 79999999774 2 234444555555444456777788888888631 223 34467778888888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+ |..+..+.|||.+.-++
T Consensus 302 ~~~~L~~~~----~~~~~~~g~~~~~~~~~ 327 (386)
T PRK09082 302 FRAALANSR----FKLLPCEGTYFQLVDYS 327 (386)
T ss_pred HHHHHHhCC----CcccCCCeeEEEEEecc
Confidence 889998742 55566688998876553
No 35
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=96.78 E-value=0.011 Score=49.89 Aligned_cols=93 Identities=16% Similarity=0.213 Sum_probs=73.4
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L 97 (125)
|.|-|+|-+.+- + ..+...+..+.-.+.++||..+...+...|++++- .++++.|+...++.|..|++.|
T Consensus 240 mtGwRvG~~v~~--~----~~l~~~~~~~~~~~~~~~~~~~Q~aa~~aL~~~~~----~~~~~~~~~~~~~rrd~l~~~l 309 (393)
T COG0436 240 MTGWRIGWVVGP--P----EELIAALRKLKSYLTSCAPTPAQYAAIAALNGPQS----DEVVEEMREEYRERRDLLVEAL 309 (393)
T ss_pred ccccceeEeecC--h----HHHHHHHHHHHHhcccCCCHHHHHHHHHHhcCccc----hHHHHHHHHHHHHHHHHHHHHH
Confidence 689999987653 2 45566677788888999999999999999998763 3556667788888899999999
Q ss_pred HhcCCCCCCcccc-ccccceeecCCCC
Q psy9326 98 EKLNTPGTWNHIT-EQIGMFSYTGLNR 123 (125)
Q Consensus 98 ~~~~~~~~w~~i~-~Q~GMFs~~gLs~ 123 (125)
.+.++ |.... .+-+||.|..+++
T Consensus 310 ~~~~g---~~~~~~p~Ga~Y~~~~i~~ 333 (393)
T COG0436 310 NEIGG---LSVVKPPEGAFYLFPKIPE 333 (393)
T ss_pred HhcCC---eeeccCCCeeEEEEeecCC
Confidence 87654 88888 6688888876654
No 36
>PRK07682 hypothetical protein; Validated
Probab=96.78 E-value=0.0082 Score=48.93 Aligned_cols=91 Identities=10% Similarity=0.075 Sum_probs=63.3
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.|. .|.|+|.+.. +++..+ .+.......+.++|......+..+|++.+ .| ++.++.++++.|..
T Consensus 225 SK~~~~~GlR~G~~~~---~~~~i~----~l~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~---~~~~~~~~~~~~~~ 291 (378)
T PRK07682 225 SKGFAMTGWRLGFIAA---PVYFSE----AMLKIHQYSMMCAPTMAQFAALEALRAGN---DD---VIRMRDSYRKRRNF 291 (378)
T ss_pred cccccChhhhhhhhhc---CHHHHH----HHHHHHHhhccCCCHHHHHHHHHHHhCCh---HH---HHHHHHHHHHHHHH
Confidence 67775 8999998764 333333 34444445555677778888888887642 23 67788888888999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++.+ +.....+-|||.+.-+
T Consensus 292 ~~~~L~~~~----~~~~~p~g~~~~~~~~ 316 (378)
T PRK07682 292 FVTSFNEIG----LTCHVPGGAFYAFPSI 316 (378)
T ss_pred HHHHHHHCC----CccCCCCeeEEEEEec
Confidence 999998763 4445567888887655
No 37
>PRK06836 aspartate aminotransferase; Provisional
Probab=96.78 E-value=0.0075 Score=49.76 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=60.4
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhh-cCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAM-YSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~-yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
||++. .|.|+|.+.+ .++...+..+...+....|.. +.++|.....++..++.++.. +.++++.|+
T Consensus 243 SK~~~~pGlRiG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~-----------~~~~~~~r~ 310 (394)
T PRK06836 243 SKSLSLPGERIGYIAV-NPEMEDADDLVAALVFANRILGFVNAPALMQRVVAKCLDATVD-----------VSIYKRNRD 310 (394)
T ss_pred hhhccCcceeeEEEec-CHHHhhhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCChHH-----------HHHHHHHHH
Confidence 67774 8999999664 222222333444455555543 456777789999999998532 234555678
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+.+.|++.| |..+..+-|||.+..+.
T Consensus 311 ~l~~~L~~~g----~~~~~~~gg~~~~~~~~ 337 (394)
T PRK06836 311 LLYDGLTELG----FECVKPQGAFYLFPKSP 337 (394)
T ss_pred HHHHHHHhCC----CEeecCCceEEEEEeCC
Confidence 8888887652 66666777899877553
No 38
>PRK08960 hypothetical protein; Provisional
Probab=96.77 E-value=0.012 Score=48.29 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=61.8
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++ +.|-|+|.++. + +.+...+..+......+++.....++...|.+. +.+-++.++..+.+.|+
T Consensus 232 ~SK~~g~~GlRiG~~~~--~-----~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~-----~~~~l~~~~~~~~~~~~ 299 (387)
T PRK08960 232 FSKYFGMTGWRLGWLVA--P-----PAAVPELEKLAQNLYISASTPAQHAALACFEPE-----TLAILEARRAEFARRRD 299 (387)
T ss_pred cccccCCcccEEEEEEc--C-----HHHHHHHHHHHhhhccCCCHHHHHHHHHHhhcC-----cHHHHHHHHHHHHHHHH
Confidence 46778 79999999875 2 234444555544444455666777777777642 33455667788888899
Q ss_pred HHHHHHHhcCCCCCCcc-ccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNH-ITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~-i~~Q~GMFs~~gLs 122 (125)
.+.+.|++.+ +.. ...+-|+|.+.-+.
T Consensus 300 ~l~~~L~~~~----~~~~~~p~g~~f~~~~~~ 327 (387)
T PRK08960 300 FLLPALRELG----FGIAVEPQGAFYLYADIS 327 (387)
T ss_pred HHHHHHHhcC----CcCCcCCCeeEEEEEecc
Confidence 9999998753 322 23567888776553
No 39
>PRK07568 aspartate aminotransferase; Provisional
Probab=96.77 E-value=0.0096 Score=48.67 Aligned_cols=93 Identities=24% Similarity=0.313 Sum_probs=59.9
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++. +|.|+|.++ +++++.++.+.. .....| ++|.....++..+|+++ +.| ++.++..+++.|..
T Consensus 234 SK~~~~~G~R~G~~~--~~~~~~~~~~~~----~~~~~~-~~s~~~q~~~~~~l~~~---~~~---~~~~~~~~~~~~~~ 300 (397)
T PRK07568 234 SKRYSACGARIGCLI--SKNKELIAAAMK----LCQARL-SPPTLEQIGAAALLDTP---ESY---FDEVREEYKKRRDI 300 (397)
T ss_pred hhhccCCCcceEEEe--cCCHHHHHHHHH----HhhccC-CCCcHHHHHHHHHhhCC---HHH---HHHHHHHHHHHHHH
Confidence 66674 899999864 455545444432 222334 45666788888999764 234 45577778888889
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.. + +.....+-|+|.+.-|.
T Consensus 301 l~~~L~~~~--~-~~~~~p~g~~~~~~~l~ 327 (397)
T PRK07568 301 LYEELNKIP--G-VVCEKPKGAFYIIAKLP 327 (397)
T ss_pred HHHHHhcCC--C-ceecCCCcceEEEEecC
Confidence 999997652 2 44444567787766553
No 40
>PRK06290 aspartate aminotransferase; Provisional
Probab=96.74 E-value=0.01 Score=49.80 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=60.3
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|-|+|.++. +++ +...+........++++.....++..+|.+++ |. +.++.++++.|..
T Consensus 250 SK~~g~~GlRiG~ii~---~~~----l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~----~~---~~~~~~~~~~~~~ 315 (410)
T PRK06290 250 SKAYNMTGWRLAFVVG---NEL----IVKAFATVKDNNDSGQFIAIQKAGIYALDHPE----IT---EKIREKYSRRLDK 315 (410)
T ss_pred hhhcCCchhheEeEEe---CHH----HHHHHHHHHhccccCCcHHHHHHHHHHhhCcH----HH---HHHHHHHHHHHHH
Confidence 6777 79999998663 222 33344444443344444556677888888753 53 4556677777888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+++.|++.+ |..+..+.|||.+..+.
T Consensus 316 l~~~L~~~g----~~~~~p~g~f~l~v~lp 341 (410)
T PRK06290 316 LVKILNEVG----FKAEMPGGTFYLYVKAP 341 (410)
T ss_pred HHHHHHhCC----CeecCCCeeeEEEEECC
Confidence 999998763 55556688998876664
No 41
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=96.74 E-value=0.016 Score=47.29 Aligned_cols=92 Identities=16% Similarity=0.106 Sum_probs=57.5
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.| ++|-|+|.++ + +++..+.+ ........+.++......+...|.+. ..|.+ .++.++++.|..
T Consensus 236 SK~~g~~GlRiG~~i--~-~~~l~~~~----~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~~~---~~~~~~~~~~~~ 302 (383)
T TIGR03540 236 SKTYNMTGWRIGMAV--G-NADLIAGL----GKVKTNVDSGVFQAIQYAAIAALNGP---QDVVK---EIRKIYQRRRDL 302 (383)
T ss_pred ccccCCccceeeEEe--C-CHHHHHHH----HHHHHhcccCCChHHHHHHHHHHhCC---HHHHH---HHHHHHHHHHHH
Confidence 5667 7899999874 3 33333333 33322222334434455666777664 35554 457788888999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+ |..+..+.|+|.+.-+.
T Consensus 303 ~~~~L~~~~----~~~~~~~~~~~~~~~l~ 328 (383)
T TIGR03540 303 LLEALKKIG----IDVEKPKATFYVWVPVP 328 (383)
T ss_pred HHHHHHhCC----CEecCCCcceEEEEECC
Confidence 999998763 55556677888776554
No 42
>PRK08175 aminotransferase; Validated
Probab=96.71 E-value=0.013 Score=48.28 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=58.2
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHH-hhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVR-AMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R-~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
||.| +.|.|+|.+. + +++..+ .+..+.. ..|+.+ .....++...|.++ .+.++.++.++++.|.
T Consensus 236 SK~~g~pGlRiG~~~--~-~~~l~~----~~~~~~~~~~~~~~-~~~q~~~~~~l~~~------~~~~~~~~~~~~~~~~ 301 (395)
T PRK08175 236 SKSYNMAGWRIGFMV--G-NPELVS----ALARIKSYHDYGTF-TPLQVAAIAALEGD------QQCVRDIAEQYKRRRD 301 (395)
T ss_pred cccccCcchhheeee--C-CHHHHH----HHHHHHhhcccCCC-cHHHHHHHHHHhCc------HHHHHHHHHHHHHHHH
Confidence 6777 7999999654 2 333333 3444333 234433 33444455556542 3457778889999899
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
.+.+.|+..+ |.....+.|||.++-|.+
T Consensus 302 ~~~~~L~~~~----~~~~~p~~g~~i~i~l~~ 329 (395)
T PRK08175 302 VLVKGLHEAG----WMVEMPKASMYVWAKIPE 329 (395)
T ss_pred HHHHHHHHcC----CcccCCCEEEEEEEECCc
Confidence 9999998762 544556789999887654
No 43
>PRK06348 aspartate aminotransferase; Provisional
Probab=96.66 E-value=0.017 Score=47.47 Aligned_cols=93 Identities=14% Similarity=0.234 Sum_probs=60.7
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++. +|-|+|.+++ + +.+...+..+.+..-.++|..+..++...|.+. ..| ++.++..+++.|+.
T Consensus 233 SK~~~l~GlRiG~~v~--~-----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~---~~~~~~~~~~r~~~ 299 (384)
T PRK06348 233 SKDFAMTGWRIGYVIA--P-----DYIIETAKIINEGICFSAPTISQRAAIYALKHR---DTI---VPLIKEEFQKRLEY 299 (384)
T ss_pred hhccCCccccceeeec--C-----HHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCc---HHH---HHHHHHHHHHHHHH
Confidence 67775 9999998774 2 234555666666544456666777777777643 234 34556666776777
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+++.|+.. ++ +.....+.|||.++.+.
T Consensus 300 ~~~~L~~~--~~-~~~~~p~gg~~~~~~~~ 326 (384)
T PRK06348 300 AYKRIESI--PN-LSLHPPKGSIYAFINIK 326 (384)
T ss_pred HHHHHhcC--CC-ceeccCCeeEEEEEecc
Confidence 88888754 33 44455678999886554
No 44
>PRK07337 aminotransferase; Validated
Probab=96.59 E-value=0.016 Score=47.49 Aligned_cols=94 Identities=15% Similarity=0.157 Sum_probs=62.3
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|.|+|.+++ + +.+...+.........+++..+...+...+.+..+ +.+++++..+++.|+.
T Consensus 231 SK~~~~~G~RiG~~~~--~-----~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~-----~~~~~~~~~~~~~r~~ 298 (388)
T PRK07337 231 SKYFNMTGWRLGWLVV--P-----EALVGTFEKLAQNLFICASALAQHAALACFEPDTL-----AIYERRRAEFKRRRDF 298 (388)
T ss_pred hhhcCCchhheeeeec--C-----HHHHHHHHHHHHHhccCCChHHHHHHHHHhccCch-----HHHHHHHHHHHHHHHH
Confidence 5667 79999998764 2 23555566666665656667677777777765432 2345567788888888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+. .. .+..+-|||-++-+.
T Consensus 299 ~~~~L~~~~~--~~-~~~p~~g~f~~~~~~ 325 (388)
T PRK07337 299 IVPALESLGF--KV-PVMPDGAFYVYADCR 325 (388)
T ss_pred HHHHHHhcCC--cc-ccCCCeeEEEEEecc
Confidence 9999987542 11 134577899888664
No 45
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=96.55 E-value=0.026 Score=46.12 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=55.7
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||+| ++|-|+|.++ + +++..+. +..+.....+.++..-...+..+|.+ +...++.++.++.+.|+.
T Consensus 238 SK~~g~~GlRiG~~i--~-~~~l~~~----~~~~~~~~~~~~~~~~q~~~~~~l~~------~~~~~~~~~~~~~~~~~~ 304 (385)
T PRK09276 238 SKTYNMTGWRIGFAV--G-NADLIAG----LGKVKSNVDSGVFQAIQEAGIAALNG------PQEVVEELRKIYQERRDI 304 (385)
T ss_pred hhhcCCcchhheeee--C-CHHHHHH----HHHHHhhccCCCCHHHHHHHHHHHcC------cHHHHHHHHHHHHHHHHH
Confidence 6778 7999999874 3 3333333 33332222233443445556666754 233456668888888999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+ +.....+-|+|-+.-+.
T Consensus 305 l~~~L~~~~----~~~~~~~~~~~~~v~~~ 330 (385)
T PRK09276 305 LVEGLRKLG----LEVEPPKATFYVWAPVP 330 (385)
T ss_pred HHHHHHhCC----CcccCCCcceEEEEECC
Confidence 999998752 44444566777666554
No 46
>PRK07777 aminotransferase; Validated
Probab=96.52 E-value=0.025 Score=46.37 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=55.4
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHh-hcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRA-MYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~-~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
||.| ++|.|+|.++ ++ + ++...+...... .|+. +......+...+.++ ++|. +.++..+++.|.
T Consensus 231 SK~~g~~GlRiG~~~--~~-~----~l~~~~~~~~~~~~~~~-~~~~q~~~~~~l~~~---~~~~---~~~~~~~~~~~~ 296 (387)
T PRK07777 231 AKTFNVTGWKIGWAC--GP-A----PLIAAVRAAKQYLTYVG-GAPFQPAVAHALDHE---DAWV---AALRDSLQAKRD 296 (387)
T ss_pred hhhccCcCceeEEEe--cC-H----HHHHHHHHHHhhcccCC-CCHHHHHHHHHHhCC---cHHH---HHHHHHHHHHHH
Confidence 6667 4899999865 32 2 233444444442 3433 333345556666543 3454 456678888899
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
.+.+.|++.+ |..+..+-|+|.++-+
T Consensus 297 ~l~~~L~~~~----~~~~~~~g~~~~~~~~ 322 (387)
T PRK07777 297 RLAAGLAEAG----FEVHDSAGTYFLCADP 322 (387)
T ss_pred HHHHHHHhCC----CCccCCCcceEEEecc
Confidence 9999998753 5555667788887654
No 47
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=96.50 E-value=0.022 Score=46.68 Aligned_cols=93 Identities=12% Similarity=0.151 Sum_probs=56.0
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhh-cCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAM-YSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMR 90 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~-yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R 90 (125)
-||++ +.|-|+|.++ + +++ +...+..+.... ++.++..-...++.+.++ .+-++.++..+++.|
T Consensus 237 fSK~~g~~GlRiG~~v--~-~~~----li~~l~~~~~~~~~~~~~~~~~~a~~~l~~~-------~~~l~~~~~~~~~~r 302 (388)
T PRK07366 237 LSKSYNMGGFRIGFAI--G-NAQ----LIQALRQVKAVVDFNQYRGILNGAIAALTGP-------QATVQQTVQIFRQRR 302 (388)
T ss_pred cccccCCcchhheehc--C-CHH----HHHHHHHHHhhcccCCCHHHHHHHHHHHhCc-------HHHHHHHHHHHHHHH
Confidence 37778 7999999876 2 333 333344332221 222222222223333332 234667788888889
Q ss_pred HHHHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 91 RGLRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 91 ~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
..+.+.|++.+ |.+...+.|||-+.-+++
T Consensus 303 ~~l~~~L~~~~----~~~~~p~~g~f~~~~~~~ 331 (388)
T PRK07366 303 DAFINALHQIG----WPVPLPEATMYVWAKLPE 331 (388)
T ss_pred HHHHHHHHHCC----CcccCCCeeEEEEEECCc
Confidence 99999998762 666677899998887653
No 48
>PRK06107 aspartate aminotransferase; Provisional
Probab=96.49 E-value=0.024 Score=46.92 Aligned_cols=92 Identities=20% Similarity=0.176 Sum_probs=62.4
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.| +.|-|+|.++ ++ + ++...+.......-.+|+.....++..+|++. ..|. +..++++++.|..
T Consensus 240 SK~~~~pGlRiG~~~--~~-~----~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~---~~~~---~~~~~~~~~~~~~ 306 (402)
T PRK06107 240 SKTYAMTGWRIGYAA--GP-A----DLIAAINKLQSQSSSCPSSISQAAAAAALNGD---QSFV---TESVAVYKQRRDY 306 (402)
T ss_pred chhhcCcccceeeee--cC-H----HHHHHHHHHHHhcccCCChHHHHHHHHHhcCC---hHHH---HHHHHHHHHHHHH
Confidence 5777 5999999875 22 2 24444555544444567777888889999743 3464 5556677787888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+++.|++. +| +..+..+.|||.++-+
T Consensus 307 ~~~~L~~~--~g-~~~~~p~gg~~~~~~~ 332 (402)
T PRK06107 307 ALALLNAI--PG-LSCLVPDGAFYLYVNC 332 (402)
T ss_pred HHHHHhcC--CC-CcccCCCcceEEeeec
Confidence 88999764 23 6666678899987654
No 49
>PRK05764 aspartate aminotransferase; Provisional
Probab=96.48 E-value=0.032 Score=45.50 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=61.8
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+. .|-|+|.++. + +.+..++....+..+++++...+..+..+|++. ..| ++.++.++.+.|..
T Consensus 237 SK~~~~~G~RiG~i~~---~----~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~---~~~~~~~~~~~~~~ 303 (393)
T PRK05764 237 SKAYAMTGWRLGYAAG---P----KELIKAMSKLQSHSTSNPTSIAQYAAVAALNGP---QDE---VEEMRQAFEERRDL 303 (393)
T ss_pred cccccCccceeEEEec---C----HHHHHHHHHHHhhcccCCChHHHHHHHHHHcCC---hHH---HHHHHHHHHHHHHH
Confidence 56665 8999998772 2 335555666677777788888888888888731 234 44566677777888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++. ++ +.....+-|+|.+.-+
T Consensus 304 l~~~L~~~--~g-~~~~~~~g~~~~~~~~ 329 (393)
T PRK05764 304 MVDGLNEI--PG-LECPKPEGAFYVFPNV 329 (393)
T ss_pred HHHHHhhC--CC-CcccCCCcceEEEEec
Confidence 88888865 22 5555566677765443
No 50
>PRK07683 aminotransferase A; Validated
Probab=96.47 E-value=0.027 Score=46.38 Aligned_cols=92 Identities=16% Similarity=0.098 Sum_probs=59.4
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+. .|-|+|.++. +++ +...+......++..++..+..++..+|.+.. .| ++.++.++.+.|..
T Consensus 232 SK~~~~pGlRiG~i~~---~~~----l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~---~~~~~~~~~~~~~~ 298 (387)
T PRK07683 232 SKSHSMTGWRIGFLFA---PSY----LAKHILKVHQYNVTCASSISQYAALEALTAGK---DD---AKMMRHQYKKRRDY 298 (387)
T ss_pred cccccCccceeEEEEc---CHH----HHHHHHHHHHhccCCCChHHHHHHHHHHhCCh---HH---HHHHHHHHHHHHHH
Confidence 56665 8999999864 222 33334444344444456667788888887643 23 56667888888888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|.+.+ +.....+-|+|.+.-+.
T Consensus 299 ~~~~l~~~~----~~~~~~~~~~~~~~~~~ 324 (387)
T PRK07683 299 VYNRLISMG----LDVEKPTGAFYLFPSIG 324 (387)
T ss_pred HHHHHHHcC----CcccCCCeeEEEEEecc
Confidence 888887642 44445677888776443
No 51
>PRK09105 putative aminotransferase; Provisional
Probab=96.45 E-value=0.022 Score=46.96 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=55.5
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||.+ +.|-|+|.++. +++..+. +... .++++|..++..+..+|.+++ |.+ .+++++.+.|+
T Consensus 231 fSK~~g~~GlRiG~~v~---~~~~i~~----l~~~---~~~~~~~~~~~aa~~~L~~~~----~~~---~~~~~~~~~r~ 293 (370)
T PRK09105 231 FSKLYGMAGMRLGLAAA---RPDLLAK----LARF---GHNPLPVPAAAAGLASLRDPK----LVP---QRRAENAAVRE 293 (370)
T ss_pred ccHhhcCCccceeeeec---CHHHHHH----HHhc---CCCCcCHHHHHHHHHHHhCHH----HHH---HHHHHHHHHHH
Confidence 36777 79999998773 2233332 3322 456688888888888998753 644 44556777788
Q ss_pred HHHHHHHhcCCCCCCcccccccccee
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFS 117 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs 117 (125)
.+.+.|++.+ |..+..+-|+|.
T Consensus 294 ~l~~~L~~~g----~~~~~~~~~f~~ 315 (370)
T PRK09105 294 DTIAWLKKKG----YKCTPSQANCFM 315 (370)
T ss_pred HHHHHHHHCC----CCcCCCCCcEEE
Confidence 8999998753 555555656554
No 52
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=96.42 E-value=0.028 Score=46.55 Aligned_cols=97 Identities=14% Similarity=0.035 Sum_probs=58.0
Q ss_pred cccc-ccCCccceEEEEcCCCCcH----HHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHI----PAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQ 88 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a----~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~ 88 (125)
||++ +.|.|+|.+++ + ++.. +.+...........+.+++.....++..++.++.. .|. ...+..+++
T Consensus 245 SK~~g~pGlRiG~~i~--~-~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~--~~~---~~~~~~~~~ 316 (402)
T TIGR03542 245 SKTAGFTGVRLGWTVV--P-KELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGL--QPI---LEAISYYME 316 (402)
T ss_pred ccccCCCCcceEEEEe--c-HHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcch--hHH---HHHHHHHHH
Confidence 7888 79999997765 2 2221 12222222233345555666666777888887653 233 334566667
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 89 MRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 89 ~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.|+.+.+.|++.+ +.......|+|.+.-+.
T Consensus 317 ~~~~~~~~L~~~~----~~~~~~~~~~f~~v~l~ 346 (402)
T TIGR03542 317 NARILRKALEAAG----FKVYGGEHAPYLWVKTP 346 (402)
T ss_pred HHHHHHHHHHhcC----ceecCCCceeEEEEECC
Confidence 6788888887753 44333346778777664
No 53
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=96.40 E-value=0.026 Score=46.82 Aligned_cols=98 Identities=12% Similarity=0.012 Sum_probs=61.9
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHH--------HHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAV--------KSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMS 83 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v--------~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~ 83 (125)
-||.+ +.|-|+|.++. + ++..+.+ ...+....+..+.+++......+..+|.+.. ..| ++.++
T Consensus 247 fSK~~~~pGlRiG~~i~--~-~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~--~~~---~~~~~ 318 (409)
T PRK07590 247 FSKTAGFTGTRCAYTVV--P-KELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEG--KAQ---IKELI 318 (409)
T ss_pred CccccCCcCceeEEEEc--C-HHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCc--HHH---HHHHH
Confidence 37888 79999998664 2 2233211 1122333444566677777888888887542 234 45567
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 84 GRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 84 ~RI~~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
..+++.|+.+.+.|++.+ |.....+.|+|-+.-+.
T Consensus 319 ~~~~~~r~~l~~~L~~~~----~~~~~~~g~~f~wi~~~ 353 (409)
T PRK07590 319 DYYMENAKIIREGLESAG----FEVYGGVNAPYIWVKTP 353 (409)
T ss_pred HHHHHHHHHHHHHHHhcC----CceecCCcceEEEEECC
Confidence 777777888999998753 44333467888777664
No 54
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=96.31 E-value=0.05 Score=44.25 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=58.2
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||.+ +.|-|+|.++ ++ ++ +...+..+.+....+++..+..++...|.+.. | ++.++..+++.|.
T Consensus 215 ~SK~~~~~G~R~G~~i--~~-~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~---~~~~~~~~~~~~~ 280 (357)
T TIGR03539 215 LSKRSNLAGYRAGFVA--GD-PA----LVAELLTVRKHAGLMVPAPVQAAMVAALGDDG----H---VAEQKARYAARRA 280 (357)
T ss_pred cccccCCCceeEEEEe--cC-HH----HHHHHHHHHhhcccCCCHHHHHHHHHHcCCHH----H---HHHHHHHHHHHHH
Confidence 35666 8999999875 32 33 33334444444444566667777788887632 2 3445667777788
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
.+.+.|++.+ ++....+-|+|.+.-+
T Consensus 281 ~~~~~L~~~g----~~~~~p~~~~~~~~~~ 306 (357)
T TIGR03539 281 QLKPALEKAG----FRIDHSEAGLYLWATR 306 (357)
T ss_pred HHHHHHHHcC----CCCcCCCccEEEEEEC
Confidence 8888888753 3444557788877654
No 55
>PRK08361 aspartate aminotransferase; Provisional
Probab=96.25 E-value=0.023 Score=46.71 Aligned_cols=95 Identities=15% Similarity=0.184 Sum_probs=63.7
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+. .|.|+|.+.+ + + ++...+.........++|......+..+|.+++. .+-++.++.++++.|..
T Consensus 236 SK~~~~~GlRiG~~~~--~-~----~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~ 304 (391)
T PRK08361 236 SKTFAMTGWRLGFVIA--P-E----QVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES----WKAVEEMRKEYNERRKL 304 (391)
T ss_pred chhcCCcHhhhhhhcc--C-H----HHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc----cHHHHHHHHHHHHHHHH
Confidence 66674 8999998775 2 2 2333444444433345566667777888887543 23567788888998999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++. ++ +.....+-|+|.+.-++
T Consensus 305 ~~~~L~~~--~~-~~~~~p~g~~~~~~~l~ 331 (391)
T PRK08361 305 VLKRLKEM--PH-IKVFEPKGAFYVFANID 331 (391)
T ss_pred HHHHHHhC--CC-CeecCCCEEEEEEEECC
Confidence 99999864 33 55556677898876554
No 56
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=96.25 E-value=0.041 Score=45.39 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=58.3
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||+| +.|.|+|.+.. +++..+. +.........+++.....++..+|.+.. .| ...++.++++.|.
T Consensus 235 ~SK~~g~~GlRvG~~v~---~~~~~~~----~~~~~~~~~~~~~~~~q~~~~~~l~~~~---~~---~~~~~~~~~~~~~ 301 (391)
T PRK07309 235 LSKSHAMTGWRIGLIFA---PAEFTAQ----LIKSHQYLVTAATTMAQFAAVEALTNGK---DD---ALPMKKEYIKRRD 301 (391)
T ss_pred ChhhccCccceeEEEEe---CHHHHHH----HHHHHhhcccCCChHHHHHHHHHHhCCh---hH---HHHHHHHHHHHHH
Confidence 46777 59999999863 2333333 4433222333455556777778887643 22 2356677777788
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+.+.|++.+ +..+..+.|+|....+.
T Consensus 302 ~~~~~l~~~~----~~~~~p~gg~~~~~~l~ 328 (391)
T PRK07309 302 YIIEKMTDLG----FKIIKPDGAFYIFAKIP 328 (391)
T ss_pred HHHHHHHHCC----CeecCCCeeEEEEEECC
Confidence 8888888753 55566677888775543
No 57
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=96.20 E-value=0.046 Score=47.13 Aligned_cols=100 Identities=15% Similarity=0.187 Sum_probs=63.6
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|-|+|.+++- .+++.++.+...+..+. ..-.+++..+...+...|.+.+....|..+... +.+.|..
T Consensus 352 SK~~~~~G~RiG~~i~~-~~~~~~~~~~~~l~~~~-~~~~~~~~~~q~a~~~aL~~~~~~~~~~~~~~~----~~~~r~~ 425 (517)
T PRK13355 352 SKSHMIAGYRIGWMILS-GNKRIAKDYIEGLNMLA-NMRLCSNVPAQSIVQTALGGHQSVKDYLVPGGR----VYEQREL 425 (517)
T ss_pred hhhccCcccceEEEEee-CchhhHHHHHHHHHHHh-cCcCCcChHHHHHHHHHhcCCccHHHHHHHHHH----HHHHHHH
Confidence 5665 789999987753 34444455555454333 232346677777888888765444556555433 3344888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+++.|++. || +.....|-|||.+.-+.
T Consensus 426 l~~~L~~~--~g-~~~~~p~g~fy~~~~l~ 452 (517)
T PRK13355 426 VYNALNAI--PG-ISAVKPKAAFYIFPKID 452 (517)
T ss_pred HHHHHhcC--CC-cccCCCCeeeEEEeecC
Confidence 89999764 33 67777889999886553
No 58
>PLN02656 tyrosine transaminase
Probab=96.13 E-value=0.069 Score=44.44 Aligned_cols=100 Identities=15% Similarity=0.136 Sum_probs=61.1
Q ss_pred cccc-cccCCccceEEEEcCCCCc-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYS-IPTDERIGNLTLVLKDKSH-IPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMR 90 (125)
Q Consensus 13 ~~~~-~~ygeRvGal~vV~~~~~~-a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R 90 (125)
-||. .+.|-|+|.++.--++.-. ...+...+..... .+..++.....++..+|++.. ..| ++.++.++++.|
T Consensus 239 fSK~f~~pGlRiG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~~~l~~~~--~~~---~~~~~~~~~~~r 312 (409)
T PLN02656 239 LSKRWIVPGWRLGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVPTILEQTD--ESF---FKKTINILKQSS 312 (409)
T ss_pred cchhccCcceeEEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHHHHHhcCc--HHH---HHHHHHHHHHHH
Confidence 3566 7899999998753211000 1233333443333 355667778888889987522 234 555677788888
Q ss_pred HHHHHHHHhcCCCCCCc-cccccccceeecCC
Q psy9326 91 RGLRERLEKLNTPGTWN-HITEQIGMFSYTGL 121 (125)
Q Consensus 91 ~~L~~~L~~~~~~~~w~-~i~~Q~GMFs~~gL 121 (125)
..+.+.|++.+ + +. ....+-|||.+.-+
T Consensus 313 ~~~~~~L~~~~--~-~~~~~~p~gg~~~w~~l 341 (409)
T PLN02656 313 DICCDRIKEIP--C-ITCPHKPEGSMAVMVKL 341 (409)
T ss_pred HHHHHHHhhCC--C-CcCCcCCCeEEEEEEec
Confidence 99999998752 2 22 23457789987655
No 59
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=96.10 E-value=0.028 Score=45.65 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=57.3
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+. +|-|+|.+. +++++..+. +... +..| +++..++.++..+|.+++ |. +.++.++++.|+.
T Consensus 211 SK~~~~~G~RiG~~v--~~~~~~~~~----l~~~-~~~~-~~~~~~~~~a~~~l~~~~----~~---~~~~~~~~~~r~~ 275 (356)
T PRK08056 211 TKFYAIPGLRLGYLV--NSDDAAVAR----MRRQ-QMPW-SINAFAALAGEVILQDRA----YQ---QATWQWLAEEGAR 275 (356)
T ss_pred hhhccCcchhheeee--cCCHHHHHH----HHHh-CCCC-chhHHHHHHHHHHhCCHH----HH---HHHHHHHHHHHHH
Confidence 55666 999999873 444333333 3321 2334 456678888888997644 53 5667778888889
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++. ++ |.. ....|+|-++-+.
T Consensus 276 l~~~L~~~--~~-~~~-~~~~~~~~~~~~~ 301 (356)
T PRK08056 276 FYQALCAL--PL-LTV-WPGRANYLFLRCE 301 (356)
T ss_pred HHHHHhcC--CC-cEE-cCCCCcEEEEEcC
Confidence 99999764 22 443 3456888776553
No 60
>PRK05942 aspartate aminotransferase; Provisional
Probab=96.07 E-value=0.052 Score=44.70 Aligned_cols=92 Identities=16% Similarity=0.199 Sum_probs=57.5
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.| +.|.|+|.++. +++. ...+.......-.+++.....++..+|++. ..| ++.++.++++.|..
T Consensus 242 SK~~~~~GlRiG~i~~---~~~l----~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~---~~~---~~~~~~~~~~~~~~ 308 (394)
T PRK05942 242 SKTYNMAGWRVGFVVG---NRHI----IQGLRTLKTNLDYGIFSALQKAAETALQLP---DSY---LQQVQERYRTRRDF 308 (394)
T ss_pred hhccCChhhheeeeec---CHHH----HHHHHHHHhhcccCCCHHHHHHHHHHHhCc---HHH---HHHHHHHHHHHHHH
Confidence 6777 79999999853 2333 333444433322234445566777777532 223 44567788888888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+ +..+..+.|||.++-+.
T Consensus 309 ~~~~L~~~~----~~~~~~~~~~f~~~~~~ 334 (394)
T PRK05942 309 LIQGLGELG----WNIPPTKATMYLWVPCP 334 (394)
T ss_pred HHHHHHHCC----CeecCCCeeeEEEEECC
Confidence 888887652 55556678888876554
No 61
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=95.95 E-value=0.02 Score=46.37 Aligned_cols=76 Identities=18% Similarity=0.219 Sum_probs=47.8
Q ss_pred cccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||.|. +|.|+|.+++ +++ +...+..+ +..| +++..+..++..+|++.+...+|. .++.+.|.
T Consensus 202 ~SK~~~l~GlRiG~iv~---~~~----~i~~~~~~-~~~~-~~~~~~q~~~~~~l~~~~~~~~~~-------~~~~~~r~ 265 (337)
T PRK03967 202 FSKAFGLAGIRAGYAIA---NEE----IIDALYRI-KPPF-SLNILTMKIVRLALDHYDLIEERI-------DYIIKERE 265 (337)
T ss_pred chHhhcchhhhheeeec---CHH----HHHHHHhh-cCCC-CCCHHHHHHHHHHHhCHHHHHHHH-------HHHHHHHH
Confidence 367775 9999999875 222 33334443 3445 467889999999998766333332 33344567
Q ss_pred HHHHHHHhcCCCC
Q psy9326 92 GLRERLEKLNTPG 104 (125)
Q Consensus 92 ~L~~~L~~~~~~~ 104 (125)
.+.+.|.+...|.
T Consensus 266 ~l~~~L~~~~~~~ 278 (337)
T PRK03967 266 RVRRELGEYAYPS 278 (337)
T ss_pred HHHHHhccCcCCC
Confidence 7777887654443
No 62
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=95.88 E-value=0.096 Score=43.66 Aligned_cols=99 Identities=13% Similarity=0.126 Sum_probs=56.0
Q ss_pred ccc-cccCCccceEEEEcCCCCcH-H--HHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYS-IPTDERIGNLTLVLKDKSHI-P--AVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQM 89 (125)
Q Consensus 14 ~~~-~~ygeRvGal~vV~~~~~~a-~--~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~ 89 (125)
||+ .+.|.|+|.++ +++++.. + .+..++..... .+..++.....++..+|.+.. ..|.++ ++.++++.
T Consensus 241 SK~f~~pGlRvG~~v--~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~a~~~~l~~~~--~~~~~~---~~~~~~~~ 312 (409)
T PLN00143 241 SKRWMIPGWGLGWLV--TCDPSGLLQICEIADSIKKALN-PAPFPPTFIQAAIPEILEKTT--EDFFSK---TINILRAA 312 (409)
T ss_pred hhhcCCCccceEEEE--eeCchhhhhhHHHHHHHHHHHh-ccCCCCchHHHHHHHHHhcCh--HHHHHH---HHHHHHHH
Confidence 677 78999999874 4433222 1 22233333322 233345556667777776531 345554 45566666
Q ss_pred HHHHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 90 RRGLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 90 R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
|+.+.+.|++.+ +.+-....+-|||.+.-++
T Consensus 313 ~~~~~~~L~~~~--~~~~~~~p~gg~f~w~~l~ 343 (409)
T PLN00143 313 LAFCYDKLKEIP--CIMCPQKAEGAFFALVKLN 343 (409)
T ss_pred HHHHHHHHhcCC--CCCCCCCCCeeEEEEEecc
Confidence 777888887642 2111123467999988764
No 63
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=95.85 E-value=0.069 Score=45.79 Aligned_cols=104 Identities=15% Similarity=0.214 Sum_probs=72.4
Q ss_pred ccCCCcccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHH
Q psy9326 8 LYPNLESYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIK 87 (125)
Q Consensus 8 ~~~~~~~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~ 87 (125)
+|=.--||+++.|-|+|-+.+ + +.+...+......+--.+|..-..+++..+.+- .|.+=++.|+...+
T Consensus 292 iy~gSFSK~l~PglRlG~vv~--p-----~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~G----~~~~hl~~lR~~y~ 360 (459)
T COG1167 292 IYLGSFSKTLAPGLRLGYVVA--P-----PELIEKLLRLKQAADLGPSSLSQAALAAFLLSG----HYDRHLRRLRREYA 360 (459)
T ss_pred EEEeeehhhcccccceeeeeC--C-----HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHcC----CHHHHHHHHHHHHH
Confidence 333445899999999998765 2 234444555555555666667656666666643 46777888999999
Q ss_pred HHHHHHHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 88 QMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 88 ~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
+.|+.+.++|++... +.........|||-.+-|.+
T Consensus 361 ~rr~~l~~~L~~~~~-~~~~~~~p~gG~flwl~l~~ 395 (459)
T COG1167 361 RRRDALLEALAEYLP-ELATWTRPEGGLFLWLELPE 395 (459)
T ss_pred HHHHHHHHHHHHhCC-CCeeeecCCceEEEEEEcCC
Confidence 999999999998776 22333444568999887765
No 64
>PRK06207 aspartate aminotransferase; Provisional
Probab=95.83 E-value=0.099 Score=43.52 Aligned_cols=94 Identities=15% Similarity=0.199 Sum_probs=60.0
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++. .|-|+|.++ ++ ++ +...+..+......+++.....++..+|+++. .|.++ ...+..+.|..
T Consensus 250 SK~~~lpGlRiG~ii--~~-~~----l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~~---~~~~~---~~~~~~~~r~~ 316 (405)
T PRK06207 250 SKTESLSGYRLGVAF--GS-PA----IIDRMEKLQAIVSLRAAGYSQAVLRTWFSEPD---GWMKD---RIARHQAIRDD 316 (405)
T ss_pred hhhccCcccceEEEE--cC-HH----HHHHHHHHHhHhccCCCHHHHHHHHHHHhCcH---HHHHH---HHHHHHHHHHH
Confidence 67764 899999764 33 22 33444444444444556667788888887532 34333 34455666888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs~ 123 (125)
+.+.|++. ++ +.....+-|+|.+.-+++
T Consensus 317 l~~~L~~~--~~-~~~~~p~gg~fl~~~l~~ 344 (405)
T PRK06207 317 LLRVLRGV--EG-VFVRAPQAGSYLFPRLPR 344 (405)
T ss_pred HHHHHhcC--CC-ceecCCCeeEEEEEeCcc
Confidence 99998754 22 666667889999987764
No 65
>PRK07324 transaminase; Validated
Probab=95.78 E-value=0.084 Score=43.38 Aligned_cols=94 Identities=15% Similarity=0.110 Sum_probs=59.3
Q ss_pred cccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||.+. .|-|+|.+.. +++.++. +..+...+..++|..+..++...|++ +..-++.+++.+++.|+
T Consensus 220 ~SK~~~~~G~RiG~i~~---~~~li~~----~~~~~~~~~~~~~~~~q~~a~~~l~~------~~~~l~~~~~~~~~~~~ 286 (373)
T PRK07324 220 MSKTYSLPGIRVGWIAA---NEEVIDI----LRKYRDYTMICAGVFDDMLASLALEH------RDAILERNRKIVRTNLA 286 (373)
T ss_pred chhhcCCccceeEEEec---CHHHHHH----HHHHhCcEEecCChHHHHHHHHHHcC------HHHHHHHHHHHHHHHHH
Confidence 456664 8999999754 3434443 33333333344555666677777764 34456677777888788
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.|.+.|.+. + .+..+..+-|+|.|.-+.
T Consensus 287 ~l~~~l~~~--~-~~~~~~p~gg~~~~i~~~ 314 (373)
T PRK07324 287 ILDEWVAKE--P-RVSYVKPKAVSTSFVKLD 314 (373)
T ss_pred HHHHHHhcC--C-CceEECCCceEEEEEEeC
Confidence 888888754 2 255566677888776554
No 66
>PLN00175 aminotransferase family protein; Provisional
Probab=95.76 E-value=0.089 Score=44.04 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=58.8
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++. .|-|+|.++. + ++ +...+.......-.++|.....++...|.++ ..| ++.++..+++.|..
T Consensus 258 SK~~~~~G~RiG~~v~--~-~~----l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~---~~~---~~~~~~~~~~~~~~ 324 (413)
T PLN00175 258 GKTFSLTGWKIGWAIA--P-PH----LTWGVRQAHSFLTFATATPMQWAAVAALRAP---ESY---YEELKRDYSAKKDI 324 (413)
T ss_pred hhhccCcchheeeeEe--C-HH----HHHHHHHHHhhccCCCCHHHHHHHHHHHhCC---HHH---HHHHHHHHHHHHHH
Confidence 67774 8999998764 2 22 3333444443333345555677778888765 234 45566677777888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+++.|++.+ +.....+-|||.++-++
T Consensus 325 l~~~L~~~g----~~~~~p~g~~f~~~~~~ 350 (413)
T PLN00175 325 LVEGLKEVG----FKVYPSSGTYFVMVDHT 350 (413)
T ss_pred HHHHHHHCC----CeecCCCeeEEEEEecc
Confidence 999998763 34445677888887553
No 67
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=95.66 E-value=0.12 Score=41.85 Aligned_cols=91 Identities=12% Similarity=0.056 Sum_probs=55.1
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|-|+|.+. + +++ +..++..+......++|.....++...+.++ .|. +..+.++++.|..
T Consensus 205 SK~~g~~GlRiG~~~--~-~~~----~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~----~~~---~~~r~~l~~~~~~ 270 (350)
T TIGR03537 205 SKRSGMTGYRSGFVA--G-DEK----LISFLRKLRANFGVASPDFVQAAAKAAWSDD----NHV---LERRKIFKRKRDL 270 (350)
T ss_pred ccccCCccccceeee--c-CHH----HHHHHHHHHHhhccCCCHHHHHHHHHHhCCc----HHH---HHHHHHHHHHHHH
Confidence 5666 7899999763 2 332 3444444332222244445555555556653 354 3457788888888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+ +.....+-|+|.+.-+.
T Consensus 271 ~~~~l~~~g----~~~~~~~g~~~~~~~~~ 296 (350)
T TIGR03537 271 FIEFFNKVG----LEYLYPDATFYLWVKVP 296 (350)
T ss_pred HHHHHHHCC----CcccCCCeEEEEEEECC
Confidence 888888753 45555677888776554
No 68
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=95.61 E-value=0.035 Score=44.73 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=58.2
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+. +|.|+|.+.+ +++.++. +... +..|+. +..+..++..++++++ |.+ .++.+++..|+.
T Consensus 193 SK~~g~~G~R~G~i~~---~~~~~~~----l~~~-~~~~~~-s~~~q~~~~~~l~~~~----~~~---~~~~~~~~~~~~ 256 (330)
T TIGR01140 193 TKFFGLAGLRLGFVVA---HPALLAR----LREA-LGPWTV-NGPARAAGRAALADTA----WQA---ATRARLAAERAR 256 (330)
T ss_pred chhhcCchhhhhheeC---CHHHHHH----HHhc-CCCCCc-hHHHHHHHHHHHhchH----HHH---HHHHHHHHHHHH
Confidence 66774 8999999775 2233333 3332 334543 4456888888888754 654 457889999999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+. . .+..+.|+|.++.+.
T Consensus 257 l~~~L~~~~~---~-~~~~~~~~f~~~~~~ 282 (330)
T TIGR01140 257 LAALLARLGG---L-EVVGGTALFLLVRTP 282 (330)
T ss_pred HHHHHHhCCC---c-eECCCCCeEEEEEcC
Confidence 9999987642 2 233467888776553
No 69
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=95.61 E-value=0.15 Score=43.00 Aligned_cols=99 Identities=13% Similarity=0.173 Sum_probs=61.9
Q ss_pred ccc-cccCCccceEEEEcCCCCcHH--HHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYS-IPTDERIGNLTLVLKDKSHIP--AVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMR 90 (125)
Q Consensus 14 ~~~-~~ygeRvGal~vV~~~~~~a~--~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R 90 (125)
||+ .+.|-|+|.+++-.+.. ..+ .+...++.. ...+..||......+..+|.+.. .+-++.++.++++.|
T Consensus 261 SK~~~~pG~RlG~iv~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~~~~-----~~~~~~~~~~~~~~~ 333 (430)
T PLN00145 261 SKRWVVPGWRLGWIATCDPNG-ILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIANTK-----EEFFTKTLGLLKETA 333 (430)
T ss_pred ccccCCCCeeEEEEEEecchh-hhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHH
Confidence 566 68999999977644322 111 233334433 23454566666677777876521 234556777888889
Q ss_pred HHHHHHHHhcCCCCCCcc-ccccccceeecCCC
Q psy9326 91 RGLRERLEKLNTPGTWNH-ITEQIGMFSYTGLN 122 (125)
Q Consensus 91 ~~L~~~L~~~~~~~~w~~-i~~Q~GMFs~~gLs 122 (125)
..+++.|++. ++ +.. ...+-|||-+..+.
T Consensus 334 ~~~~~~L~~~--~g-~~~~~~P~ga~y~~v~l~ 363 (430)
T PLN00145 334 DICYEKIKEI--KC-ITCPHKPEGSMFVMVKLD 363 (430)
T ss_pred HHHHHHHhcC--CC-CCCCcCCCeeeEEEeccC
Confidence 9999999764 22 332 34688999887664
No 70
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=94.91 E-value=0.23 Score=40.89 Aligned_cols=90 Identities=9% Similarity=0.033 Sum_probs=52.8
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||+| +.|-|+|.++ ++ ++.. .++.......-.+++......+...+.++ +-++..+.++++.|..
T Consensus 244 SK~~~~~GlRiG~~~--~~-~~l~----~~~~~~~~~~~~~~~~~~q~a~~~~~~~~-------~~~~~~~~~~~~~~~~ 309 (396)
T PRK09147 244 SKRSNVPGLRSGFVA--GD-AALL----KKFLLYRTYHGCAMPPAVQAASIAAWNDE-------AHVRENRALYREKFDA 309 (396)
T ss_pred ccccCCccceeeeec--CC-HHHH----HHHHHHhhhcccCCCHHHHHHHHHHhcch-------hHHHHHHHHHHHHHHH
Confidence 5654 8999999854 33 2333 33333322221234444555555555543 2356677788888888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++. +.....+.|+|.+.-++
T Consensus 310 ~~~~L~~~-----~~~~~p~~g~f~~~~~~ 334 (396)
T PRK09147 310 VTPILAPV-----LDVQLPDAGFYLWAKVP 334 (396)
T ss_pred HHHHHHHh-----cCCCCCCeeEEEEEECC
Confidence 88888753 33345678888877553
No 71
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=94.80 E-value=0.2 Score=40.22 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=55.5
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhc-CCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMY-SNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~y-S~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
||.+ ++|-|+|.+.. +++ +...+........ .+++..+..++...|.+++ |. +.+++++.+.|.
T Consensus 209 SK~~~~~GlR~G~~~~---~~~----~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~---~~~~~~~~~~~~ 274 (353)
T PRK05387 209 SKSRSLAGLRVGFAIG---HPE----LIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEA----YF---EETRAKVIATRE 274 (353)
T ss_pred hHhhcchhhhceeeec---CHH----HHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHH----HH---HHHHHHHHHHHH
Confidence 5666 58999999762 333 3333444333221 1344556667777887643 43 356778888899
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+.+.|++.+ |. +....|+|.+..+.
T Consensus 275 ~l~~~L~~~g----~~-~~~~~~~~~~~~~~ 300 (353)
T PRK05387 275 RLVEELEALG----FE-VLPSKANFVFARHP 300 (353)
T ss_pred HHHHHHHHCC----Ce-ECCCcCcEEEEECC
Confidence 9999998763 43 23456777776554
No 72
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=94.75 E-value=0.34 Score=39.82 Aligned_cols=90 Identities=11% Similarity=0.012 Sum_probs=51.8
Q ss_pred ccc-cccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYS-IPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~-~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||. .+.|-|+|.++ ++ ++.++. +.......-..+|...+..+...+.++ +-++..+.++++.|..
T Consensus 243 SK~~~~~GlRvG~~i--~~-~~l~~~----~~~~~~~~~~~~~~~~q~~~~~~l~~~-------~~~~~~~~~~~~~~~~ 308 (393)
T TIGR03538 243 SKRSNLPGLRSGFVA--GD-AEILKA----FLRYRTYHGCAMPIPTQLASIAAWNDE-------QHVRENRALYREKFAA 308 (393)
T ss_pred hhhcCCcccceEEEe--cC-HHHHHH----HHHHHHhhccCcCHHHHHHHHHHhcCh-------HHHHHHHHHHHHHHHH
Confidence 554 47999999854 33 333333 333322211234444555555566543 2355666777777888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++. ......+.|+|.+.-+.
T Consensus 309 ~~~~L~~~-----~~~~~p~gg~f~~~~~~ 333 (393)
T TIGR03538 309 VLEILGQV-----LDLELPDAGFYLWPKVP 333 (393)
T ss_pred HHHHHHhh-----CcccCCCeeEEEEEECC
Confidence 88888754 12245678898887654
No 73
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=94.68 E-value=0.24 Score=40.62 Aligned_cols=90 Identities=21% Similarity=0.304 Sum_probs=56.2
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++ +.|-|+|.++ + +++.++. +... +..|+ .|.....++...|++. +.|.+.++.. .++ |.
T Consensus 232 fSK~~g~~GlRiG~~v--~-~~~l~~~----l~~~-~~~~~-~~~~~q~a~~~~l~~~---~~~~~~~~~~---~~~-r~ 295 (374)
T PRK02610 232 FSKAFRLAAHRVGYAI--G-HPELIAV----LEKV-RLPYN-LPSFSQLAAQLALEHR---QELLAAIPEI---LQE-RD 295 (374)
T ss_pred cchhccCcccceeeee--c-CHHHHHH----HHHh-cCCCC-CCHHHHHHHHHHhcCH---HHHHHHHHHH---HHH-HH
Confidence 37888 8999999875 3 3333333 3332 23344 4566777788888764 4565554433 344 77
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+.+.|+.. ++ |. +..+.|+|.+.-++
T Consensus 296 ~l~~~L~~~--~~-~~-~~p~~g~f~~~~l~ 322 (374)
T PRK02610 296 RLYQALQEL--PQ-LR-VWPSAANFLYLRLS 322 (374)
T ss_pred HHHHHHHhC--CC-cE-eCCCcceEEEEeCC
Confidence 788888764 33 54 34788999887664
No 74
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=94.62 E-value=0.13 Score=41.11 Aligned_cols=88 Identities=20% Similarity=0.278 Sum_probs=55.3
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|.|+|.+.+ ++ .+..+++.. +..|+ .+..+...+..++.+.. | ++.++.++++.|..
T Consensus 209 sK~~g~~G~r~G~~~~---~~----~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~~~----~---~~~~~~~~~~~~~~ 272 (346)
T TIGR01141 209 SKAFGLAGLRIGYAIA---NA----EIIDALNKV-RAPFN-LSRLAQAAAIAALRDDD----F---IEKTVEEINAERER 272 (346)
T ss_pred hHhhhchhhhceeeec---CH----HHHHHHHhc-cCCCC-CCHHHHHHHHHHhCCHH----H---HHHHHHHHHHHHHH
Confidence 5777 78999998764 22 234444443 33444 33445566677777653 3 55678888888999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++. +| |. +....|+|-...+
T Consensus 273 l~~~L~~~--~g-~~-~~~~~g~~~~~~~ 297 (346)
T TIGR01141 273 LYDGLKKL--PG-LE-VYPSDANFVLIRF 297 (346)
T ss_pred HHHHHHhc--CC-CE-ECCCcCCEEEEec
Confidence 99999865 22 54 4445677765544
No 75
>KOG0256|consensus
Probab=94.55 E-value=0.3 Score=42.55 Aligned_cols=90 Identities=18% Similarity=0.305 Sum_probs=67.3
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L 97 (125)
+.|=|+|++.- .|++ |.+....+++ |.-.+..-..+++..|+|.+..+.+..| -+.||+..-..+.+.|
T Consensus 307 lpGfRvGviYS--~ne~----VvsaA~kmss--f~~vSs~tQ~~la~LLSD~~f~~~yl~e---n~~Rl~~rh~~~~~gL 375 (471)
T KOG0256|consen 307 LPGFRVGVIYS--NNED----VVSAATKMSS--FGLVSSQTQYLLASLLSDEEFTREYLRE---NNKRLRIRHRYIVEGL 375 (471)
T ss_pred CCceEEEEEEe--cChH----HHHHHHHHhh--ccCCcHHHHHHHHHHhchHHHHHHHHHH---HHHHHHHHHHHHHhhH
Confidence 46789997653 4433 3444455554 7888888899999999997766666555 4668888777889999
Q ss_pred HhcCCCCCCccccccccceeecCCC
Q psy9326 98 EKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 98 ~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+++|.| ++..+-|+|+..-|.
T Consensus 376 k~lgI~----cl~s~AGlF~wvDlr 396 (471)
T KOG0256|consen 376 KALGIP----CLKSNAGLFCWVDLR 396 (471)
T ss_pred HhcCCc----eeecCCeeEEEEEhH
Confidence 999975 689999999986553
No 76
>PLN02187 rooty/superroot1
Probab=94.49 E-value=0.37 Score=41.23 Aligned_cols=99 Identities=14% Similarity=0.156 Sum_probs=58.3
Q ss_pred ccc-cccCCccceEEEEcCCCCcHHHHHHHHHHHHHh-hcC-CCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYS-IPTDERIGNLTLVLKDKSHIPAVKSQITLIVRA-MYS-NPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMR 90 (125)
Q Consensus 14 ~~~-~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~-~yS-~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R 90 (125)
||. .+.|-|+|.+++ .+++..-.+...+..+... .++ .|+......+..+|.+.. ..|.+ .+++.+++.|
T Consensus 275 SK~f~~pGlRiG~~v~--~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~--~~~l~---~~~~~l~~~r 347 (462)
T PLN02187 275 SKGWVVPGWKIGWIAL--NDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKAD--KNFFA---KKNKILKHNV 347 (462)
T ss_pred hhhcCCccceeEEEEe--cCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCc--HHHHH---HHHHHHHHHH
Confidence 566 778999998653 4433222222233333222 232 356777888888887522 34544 4466778888
Q ss_pred HHHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 91 RGLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 91 ~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+++.|++. ++.......+.|||.+.-+
T Consensus 348 ~~l~~~L~~~--~~~~~~~~P~gg~fl~~~l 376 (462)
T PLN02187 348 DLVCDRLKDI--PCVVCPKKPESCTYLLTKL 376 (462)
T ss_pred HHHHHHHhhC--CCCcCCCCCCEeEEEEeec
Confidence 8899999864 2211122356789998754
No 77
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=94.42 E-value=0.37 Score=39.46 Aligned_cols=87 Identities=9% Similarity=0.045 Sum_probs=56.2
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|-|+|.++. + ++. ...+..+.+ .|+ ++...+.++..+|.|+ .|. +++++++...|+.
T Consensus 222 SK~~g~~GlRiG~~v~--~-~~~----~~~l~~~~~-~~~-~s~~~q~~~~~~l~~~----~~~---~~~~~~~~~~r~~ 285 (369)
T PRK08153 222 SKAYGLAGARVGYAIG--A-PGT----IKAFDKVRN-HFG-MNRIAQAAALAALKDQ----AYL---AEVVGKIAAARDR 285 (369)
T ss_pred hHhccCcchheeeeec--C-HHH----HHHHHHhhc-CCC-CCHHHHHHHHHHhcCH----HHH---HHHHHHHHHHHHH
Confidence 6777 48999998764 2 233 333444333 354 6667788888888764 454 4467778888888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++.+ +. +....|+|.+.-+
T Consensus 286 ~~~~L~~~g----~~-~~p~~~~f~~~~~ 309 (369)
T PRK08153 286 IAAIARANG----LT-PLPSATNFVAIDC 309 (369)
T ss_pred HHHHHHHCC----Cc-cCCCcCcEEEEEC
Confidence 888888654 22 2245677766544
No 78
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=94.30 E-value=0.3 Score=40.29 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=57.0
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|-|+|.++. ++ .+...+..+ +..|+ ++..+...+...|.+++ | ++.++..+.+.|..
T Consensus 239 SK~~glaGlRiGy~~~---~~----~~i~~l~~~-~~~~~-~~~~~q~aa~~aL~~~~----~---~~~~~~~~~~~r~~ 302 (380)
T PLN03026 239 SKRAGLAGLRVGYGAF---PL----SIIEYLWRA-KQPYN-VSVAAEVAACAALSNPK----Y---LEDVKNALVEERER 302 (380)
T ss_pred hHhhcCccccceeeec---CH----HHHHHHHHh-cCCCC-CCHHHHHHHHHHhhCHH----H---HHHHHHHHHHHHHH
Confidence 5667 59999998763 22 233334433 33454 55566677778887643 5 34567778888999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++.+ +-.+..+.|+|.+.-++
T Consensus 303 l~~~L~~~~----~~~~~p~~~~f~~~~~~ 328 (380)
T PLN03026 303 LFGLLKEVP----FLEPYPSDANFILCRVT 328 (380)
T ss_pred HHHHHHHCC----CCeECCCCCeEEEEECC
Confidence 999998753 22234567888777654
No 79
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=94.21 E-value=0.39 Score=39.35 Aligned_cols=93 Identities=23% Similarity=0.326 Sum_probs=56.9
Q ss_pred cccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||+|. .|-|+|.++. +++.+ ..+..+ +..|+. +..+..++..+|+|.+. .| +.....++++.|+
T Consensus 218 fSK~~gl~GlRvGy~v~---~~~l~----~~l~~~-~~~~~~-~~~~~~~a~~~l~~~~~--~~---~~~~~~~~~~~r~ 283 (364)
T PRK04781 218 LSKAHALAAARIGSLIA---NAELI----AVLRRC-QAPYPV-PTPCAALAEQALSAPAL--AV---TARRVAEVRAERE 283 (364)
T ss_pred ChhhcccccceeeeeeC---CHHHH----HHHHhc-cCCCCC-CHHHHHHHHHHHhcccH--HH---HHHHHHHHHHHHH
Confidence 367774 8999999653 23333 334333 334543 44555677778887542 12 2233345677799
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+.+.|++. ++ +..+..+.|+|.+.-+.
T Consensus 284 ~l~~~L~~~--~~-~~~~~p~~g~f~~~~~~ 311 (364)
T PRK04781 284 RLHAALAQL--PG-VRRVYPSQGNFLLVRFD 311 (364)
T ss_pred HHHHHHHhC--CC-CCeECCCCCcEEEEEcC
Confidence 999999865 33 44456778999876553
No 80
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=93.97 E-value=0.11 Score=41.91 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=54.6
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGL 93 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L 93 (125)
||..+.|.|+|.++. + + ++...+... +..| +++..+..++..++++.+ .++.++.++++.|..+
T Consensus 217 SK~~~~GlRiG~~i~--~-~----~~i~~~~~~-~~~~-~~~~~~q~~a~~~l~~~~-------~~~~~~~~~~~~~~~l 280 (356)
T PRK04870 217 SKLGLAGLRLGYLAG--H-P----AWIAELDKV-RPPY-NVNVLTQATALFALEHVD-------VLDAQAAQLRAERTRL 280 (356)
T ss_pred hhhhhHHHhhhhhhC--C-H----HHHHHHHHc-cCCC-cCCHHHHHHHHHHHhCHH-------HHHHHHHHHHHHHHHH
Confidence 444678999998753 2 2 233334332 3445 455566777777777532 3556677788889999
Q ss_pred HHHHHhcCCCCCCccccccccceeecCC
Q psy9326 94 RERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 94 ~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
.+.|+.. ++ |. +....|+|.+..+
T Consensus 281 ~~~L~~~--~~-~~-~~~~~~~~~~~~~ 304 (356)
T PRK04870 281 AAALAAL--PG-VT-VFPSAANFILVRV 304 (356)
T ss_pred HHHHHhC--CC-cE-ECCCCCeEEEEEC
Confidence 9999865 33 43 3456677776655
No 81
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=93.73 E-value=0.26 Score=40.16 Aligned_cols=91 Identities=15% Similarity=0.132 Sum_probs=55.4
Q ss_pred cccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++. .|.|+|.++ ++++..++.+. .+ +..|+ .+.....++..+|+++ .| ++.+++++++.|+
T Consensus 211 ~SK~~gl~G~RiG~lv--~~~~~~~~~~~----~~-~~~~~-~~~~~q~~~~~~l~~~----~~---~~~~~~~~~~~r~ 275 (354)
T PRK06358 211 FTKFFAIPGLRLGYGL--TSNKNLAEKLL----QM-REPWS-INTFADLAGQTLLDDK----EY---IKKTIQWIKEEKD 275 (354)
T ss_pred chhhccCcchhheeee--cCCHHHHHHHH----Hh-CCCCc-chHHHHHHHHHHhccH----HH---HHHHHHHHHHHHH
Confidence 367774 999999984 34433333332 22 23443 3555667778888753 23 4566777788889
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
.+++.|++. ++ +..... .|.|.+.-+.
T Consensus 276 ~l~~~L~~~--~~-~~~~~~-~g~f~~~~~~ 302 (354)
T PRK06358 276 FLYNGLSEF--KG-IKVYKP-SVNFIFFKLE 302 (354)
T ss_pred HHHHHHhcC--CC-cEEcCC-cceEEEEEcC
Confidence 999999865 33 443333 4667665543
No 82
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=93.57 E-value=0.65 Score=37.79 Aligned_cols=87 Identities=13% Similarity=0.126 Sum_probs=56.6
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++ +.|-|+|.++. + ++ +...+... +..|+. +..+..++...|+|++ |.+ ++++++.+.|.
T Consensus 196 fSK~~gl~GlRiGy~v~--~-~~----li~~l~~~-~~~~~v-s~~~q~a~~~~L~~~~----~~~---~~~~~~~~~r~ 259 (339)
T PRK06959 196 VGKFFGLAGVRAGFVLA--A-PA----LLAALRDA-LGAWTV-SGPARHAVRAAFADAA----WQA---AMRERLAADGA 259 (339)
T ss_pred ChhhcCCcchheEEEec--C-HH----HHHHHHHh-cCCCCC-cHHHHHHHHHHhCcHH----HHH---HHHHHHHHHHH
Confidence 36777 48999998763 2 33 33444443 345654 4557778888998755 443 45788888899
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
.+.+.|++.+. ... ..|+|.+..+
T Consensus 260 ~l~~~L~~~g~----~~~--~~~~f~~~~~ 283 (339)
T PRK06959 260 RLAALLRAHGF----AVH--ATPLFSWTDD 283 (339)
T ss_pred HHHHHHHHCCC----Ccc--CcceEEEEeC
Confidence 99999988753 222 2477766554
No 83
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=93.39 E-value=0.46 Score=38.78 Aligned_cols=89 Identities=15% Similarity=0.134 Sum_probs=54.5
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||+| +.|-|+|.+++ .+++.++.+. . .+..| +++......+...|.+++ |.++ .+..+++.|.
T Consensus 229 fSK~~~l~GlRiG~~i~--~~~~l~~~~~----~-~~~~~-~~~~~~q~~~~~~l~~~~----~~~~---~~~~~~~~r~ 293 (371)
T PRK05166 229 FSKAYGLAGLRVGYGLV--SDPELVGLLD----R-VRTPF-NVNGAAQAAALAALDDEE----HLAK---GVALALAERE 293 (371)
T ss_pred chHhhhcchhheeeeec--CCHHHHHHHH----H-hccCC-CCCHHHHHHHHHHhcCHH----HHHH---HHHHHHHHHH
Confidence 36777 49999996553 4444433332 2 23334 466666667778887653 5433 3455566678
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
.+.+.|++.+ +. +....|+|-+..+
T Consensus 294 ~l~~~L~~~g----~~-~~p~~g~fl~~~~ 318 (371)
T PRK05166 294 RLKKELAEMG----YR-IAPSRANFLFFDA 318 (371)
T ss_pred HHHHHHHHCc----Ce-eCCCcCCEEEEeC
Confidence 8888888763 33 3456688877654
No 84
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=93.14 E-value=0.29 Score=39.79 Aligned_cols=85 Identities=15% Similarity=0.213 Sum_probs=50.1
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|-|+|.+.. +++.++. +... +..|+ ++..++.++...|.+. ..|. +.++++.+.|..
T Consensus 227 SK~~g~~GlRiG~~~~---~~~~~~~----l~~~-~~~~~-~s~~~~~a~~~~l~~~---~~~~----~~~~~~~~~~~~ 290 (368)
T PRK03317 227 SKAFAFAGGRLGYLAA---APAVVDA----LRLV-RLPYH-LSAVTQAAARAALRHA---DELL----ASVAALRAERDR 290 (368)
T ss_pred hhhhccchhhhhhhhC---CHHHHHH----HHhc-CCCCC-CCHHHHHHHHHHhhCH---HHHH----HHHHHHHHHHHH
Confidence 7888 58999999863 3334433 3322 34564 4445666777777652 2333 334456677888
Q ss_pred HHHHHHhcCCCCCCccccccccceee
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSY 118 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~ 118 (125)
+.+.|++.+ +.....+-|+|.+
T Consensus 291 l~~~L~~~g----~~~~~~~~~~~~~ 312 (368)
T PRK03317 291 VVAWLRELG----LRVAPSDANFVLF 312 (368)
T ss_pred HHHHHHHCC----CEeCCCCCcEEEE
Confidence 888888753 4444445555544
No 85
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=92.96 E-value=0.53 Score=37.99 Aligned_cols=87 Identities=9% Similarity=0.043 Sum_probs=55.2
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++. .|-|+|.+.. +++.+ .++... +..| +++..+..++..+|++. .|.++ ++..++..|+.
T Consensus 221 SK~~g~~GlRiG~~v~---~~~~~----~~~~~~-~~~~-~~~~~~q~~~~~~l~~~----~~~~~---~~~~~~~~~~~ 284 (359)
T PRK03158 221 SKAYGLAALRVGYGIA---SEELI----EKLNIA-RPPF-NTTRIAQYAAIAALEDQ----AFLKE---CVEKNAEGLEQ 284 (359)
T ss_pred hHhhcCcchhhehhcC---CHHHH----HHHHHh-cCCC-CCCHHHHHHHHHHhcCH----HHHHH---HHHHHHHHHHH
Confidence 56774 8999998652 22333 334433 3445 46777888899999874 36544 44556677888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++.+ +..+ ...|+|.+.-+
T Consensus 285 ~~~~l~~~~----~~~~-~~~g~~i~~~~ 308 (359)
T PRK03158 285 YYAFCKEYG----LFYY-PSQTNFIFVDT 308 (359)
T ss_pred HHHHHHHCC----CeeC-CCcCcEEEEEC
Confidence 888888763 3333 44578877654
No 86
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=92.83 E-value=0.53 Score=38.19 Aligned_cols=88 Identities=15% Similarity=0.133 Sum_probs=56.2
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||+|. .|-|+|.++. + ++.++ .+.. .+..| +++.....++..+|.+.+ |.+++ ++++++.|..
T Consensus 215 SK~~~l~GlRiG~~v~--~-~~~~~----~~~~-~~~~~-~~s~~~q~~~~~~l~~~~----~~~~~---~~~~~~~r~~ 278 (360)
T PRK07392 215 TKFYSLPGLRLGYAIA--H-PDRLQ----RWQQ-WRDPW-PVNGLAAAAAIAALADRD----FQQQT---WAWLPPAREA 278 (360)
T ss_pred hhhhcCCchheeeeeC--C-HHHHH----HHHh-hCCCC-CCCHHHHHHHHHHhccHH----HHHHH---HHHHHHHHHH
Confidence 67785 9999998764 3 22333 2332 23334 456677888889998743 66554 3457777888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
|.+.|+.. ++ |.. ..+.|+|.+.-+
T Consensus 279 l~~~L~~~--~~-~~~-~~~~~~fl~~~~ 303 (360)
T PRK07392 279 LFQGLASL--PG-LTP-LPSAANFLLVQS 303 (360)
T ss_pred HHHHHHhC--CC-cEE-CCCCCCEEEEEc
Confidence 99999754 22 443 346788877654
No 87
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=92.80 E-value=0.48 Score=38.35 Aligned_cols=85 Identities=16% Similarity=0.229 Sum_probs=51.7
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++ +.|-|+|.++. + ++.++. +..+ +..|+ ++..+...+...|.++ .|.++ +++.++..|.
T Consensus 220 fSK~~~~~GlRiG~~~~--~-~~~~~~----~~~~-~~~~~-~~~~~~~~a~~~l~~~----~~~~~---~~~~~~~~r~ 283 (357)
T PRK14809 220 FSKAYGLAGLRLGYAVV--P-EEWADA----YARV-NTPFA-ASELACRAGLAALDDD----EHVER---TVETARWARE 283 (357)
T ss_pred chhHhcCcchhheeeec--C-HHHHHH----HHHh-CCCCC-CCHHHHHHHHHHhCCH----HHHHH---HHHHHHHHHH
Confidence 36778 58999998764 3 223333 3322 33443 5566677778888764 35444 4455666788
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
.+.+.|.... | ...|+|.+.-+
T Consensus 284 ~l~~~L~~~~----~----~~~g~f~~~~~ 305 (357)
T PRK14809 284 YIREELDAPT----W----ESAGNFVLAEV 305 (357)
T ss_pred HHHHHhcCcc----C----CCCCCEEEEEC
Confidence 8888885421 2 35688877654
No 88
>PRK07908 hypothetical protein; Provisional
Probab=92.69 E-value=0.69 Score=37.30 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=55.4
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|-|+|.+.+ +++..+. +... +..|+..+. ...++..++.+.. .++++.++.++++.|..
T Consensus 203 SK~~~l~GlRiG~~~~---~~~~~~~----~~~~-~~~~~~~~~-~~~a~~~~~~~~~-----~~~~~~~~~~~~~~r~~ 268 (349)
T PRK07908 203 TKTWSLAGLRVGYALG---APDVLAR----LTRG-RAHWPVGTL-QLEAIAACCAPRA-----VAEAAADAARLAADRAE 268 (349)
T ss_pred ccccCCccceeeeeec---CHHHHHH----HHhc-CCCCCccHH-HHHHHHHHhcccc-----hHHHHHHHHHHHHHHHH
Confidence 6667 48999998763 3333333 3332 223544332 3345555555332 23456678999999999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|++. + |.....+.|+|.+.-++
T Consensus 269 l~~~L~~~---~-~~~~~p~~g~~~~~~~~ 294 (349)
T PRK07908 269 MVAGLRAV---G-ARVVDPAAAPFVLVRVP 294 (349)
T ss_pred HHHHHHhC---C-cEeccCCCceEEEEECC
Confidence 99999875 2 55555467888776554
No 89
>PRK05839 hypothetical protein; Provisional
Probab=91.97 E-value=1 Score=36.95 Aligned_cols=86 Identities=10% Similarity=0.051 Sum_probs=46.7
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||+| +.|-|+|.++. +++.. ..+.......-.+.|......+...+.+++ |.+ .++.++++.|+.
T Consensus 231 SK~~~~~GlRiG~ii~---~~~~~----~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~----~~~---~~~~~~~~~~~~ 296 (374)
T PRK05839 231 SKRSSAPGLRSGFIAG---DASIL----KKYKAYRTYLGCASPLPLQKAAAVAWLDDE----HAE---FFRNIYAKNLKL 296 (374)
T ss_pred ccccCCccceeEEEec---CHHHH----HHHHHHHhhcCCCCChHHHHHHHHHhccch----HHH---HHHHHHHHHHHH
Confidence 5664 78999999764 23333 334333322212344444555555666533 433 345556665666
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+.+.|. . . ..+-|+|.+..+.
T Consensus 297 ~~~~l~---~----~--~p~gg~fi~~~~~ 317 (374)
T PRK05839 297 AREILG---I----T--IPPATFYVWLPVD 317 (374)
T ss_pred HHHhcC---C----C--CCCeeEEEEEeCC
Confidence 666552 1 1 3467888887664
No 90
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=91.86 E-value=0.86 Score=36.91 Aligned_cols=87 Identities=20% Similarity=0.156 Sum_probs=51.3
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|-|+|.+.. +++.++ .+..+.. ..+++.....++..+|.++ |.+ +..+.+.+.|..
T Consensus 212 SK~~~~~GlRiG~~v~---~~~~~~----~~~~~~~--~~~~~~~~q~~~~~~l~~~-----~~~---~~~~~~~~~r~~ 274 (351)
T PRK14807 212 SKAFGLAGLRVGYAVA---NENILK----YLNLVKS--PYNINSLSQVIALKVLRTG-----VLK---ERVNYILNERER 274 (351)
T ss_pred hHhcccchhceeeeec---CHHHHH----HHHHccC--CCCcCHHHHHHHHHHHhHH-----HHH---HHHHHHHHHHHH
Confidence 5677 59999999862 333333 3433322 2345566777788888753 222 222345566778
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++. +| |.. ..+.|+|-+.-+
T Consensus 275 l~~~l~~~--~g-~~~-~~~~~~~~~i~~ 299 (351)
T PRK14807 275 LIKELSKI--PG-IKV-YPSKTNFILVKF 299 (351)
T ss_pred HHHHHHhC--CC-cEE-CcCCccEEEEEc
Confidence 88888653 33 653 456688876544
No 91
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=91.55 E-value=0.93 Score=36.54 Aligned_cols=73 Identities=10% Similarity=0.170 Sum_probs=48.1
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++ +.|-|+|.++. +++.+ ..+... +..|+. +.....++...|++++ |. +.++.++...|+
T Consensus 190 fSK~~gl~GlRiG~~v~---~~~l~----~~~~~~-~~~~~~-~~~~~~~~~~~L~~~~----~~---~~~~~~~~~~r~ 253 (330)
T PRK05664 190 FGKFFGLAGARLGFVLA---EPALL----RALAEL-LGPWTV-SGPTRWLAQAALADTP----WQ---RRQRERLLAASQ 253 (330)
T ss_pred ccccccCCCcceEEEEe---CHHHH----HHHHHh-cCCCCC-CHHHHHHHHHHHhChH----HH---HHHHHHHHHHHH
Confidence 37788 59999999774 23333 334443 334543 3455667788887753 32 456788888899
Q ss_pred HHHHHHHhcC
Q psy9326 92 GLRERLEKLN 101 (125)
Q Consensus 92 ~L~~~L~~~~ 101 (125)
.+.+.|++.+
T Consensus 254 ~l~~~L~~~~ 263 (330)
T PRK05664 254 RLAALLRRHG 263 (330)
T ss_pred HHHHHHHHCC
Confidence 9999998764
No 92
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=90.82 E-value=0.51 Score=38.26 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=52.3
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|-|+|.+++ +++..+. +.. .+..|+.++ ..+.++...|.++. .+.++..+.+++..|+.
T Consensus 213 SK~~~l~GlRlG~~i~---~~~~~~~----l~~-~~~~~~~~~-~~~~~a~~~l~~~~-----~~~~~~~~~~~~~~r~~ 278 (354)
T PRK04635 213 SKAFALAGARCGFTLA---NEELIEI----LMR-VIAPYPVPL-PVSEIATQALSEAG-----LARMKFQVLDLNAQGAR 278 (354)
T ss_pred HHHhhhhHHHHhhhhC---CHHHHHH----HHh-hcCCCCCCH-HHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHH
Confidence 5666 58999998753 3333333 332 233455443 33455666676543 12355667777888999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
|++.|++.+ + +... .-.|.|.+..+
T Consensus 279 l~~~L~~~~--~-~~~~-~~~g~f~~~~~ 303 (354)
T PRK04635 279 LQAALSMYG--G-AKVL-EGNGNYVLAKF 303 (354)
T ss_pred HHHHHHhCC--C-ceEC-CCCCcEEEEEC
Confidence 999998753 1 3322 33477766544
No 93
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=90.80 E-value=2 Score=34.78 Aligned_cols=87 Identities=13% Similarity=0.191 Sum_probs=49.2
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++. .|-|+|.++. + + .+...+..+ +..|+ ++..+...+..+|++.+ |.++ ....+.+.|+.
T Consensus 201 SK~~~l~GlRvG~~v~--~-~----~~~~~l~~~-~~~~~-~~~~~q~a~~~~l~~~~----~~~~---~~~~~~~~r~~ 264 (335)
T PRK14808 201 SKAFSLAAQRIGYVVS--S-E----KFIDAYNRV-RLPFN-VSYVSQMFAKVALDHRE----IFEE---RTKFIVEERER 264 (335)
T ss_pred hhhccCcccceEEEEe--C-H----HHHHHHHHh-cCCCC-CCHHHHHHHHHHHhCHH----HHHH---HHHHHHHHHHH
Confidence 67777 8999998773 2 2 233444332 23344 44455666677776543 4333 34455555888
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++.| +..... .|-|-+.-+
T Consensus 265 l~~~L~~~g----~~~~~~-~g~f~~~~l 288 (335)
T PRK14808 265 MKSALREMG----YRITDS-RGNFVFIFM 288 (335)
T ss_pred HHHHHHHCC----CEECCC-CCeEEEEeC
Confidence 888888753 443333 455555443
No 94
>PLN02672 methionine S-methyltransferase
Probab=90.37 E-value=0.72 Score=44.20 Aligned_cols=90 Identities=20% Similarity=0.213 Sum_probs=57.4
Q ss_pred ccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCC---cchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 16 SIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNP---PSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 16 ~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~P---P~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
..+.|-|+|.++ +++++.++.+.. .. .++.| ...++..+...+.+.+ ..|.+.+++++..+++.|+.
T Consensus 912 f~lpGLRIGylI--ap~~eLi~~l~~----~~--~~s~~~~~~q~Aaaaalall~~~~--~~~~~~l~e~r~~Lk~rRd~ 981 (1082)
T PLN02672 912 LLSGGHEFGFLA--LNDSVLIDAFHS----AP--GLSRPHSTLKYTIKKLLGLKNQKS--SDLLDGVAEQKKILKSRAER 981 (1082)
T ss_pred hccHHHHheeEE--eCCHHHHHHHHH----hh--hhcCCCcHHHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHHHHHH
Confidence 346899999865 444444444443 21 12333 2333333333332211 35889999999999999999
Q ss_pred HHHHHHhcCCCCCCccccccccceeec
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYT 119 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~ 119 (125)
+.+.|++.+ |..+..+-|+|.+.
T Consensus 982 L~e~L~~~G----i~v~~PeGGFfLwl 1004 (1082)
T PLN02672 982 LKETLEACG----WDVLEPQGGISMVA 1004 (1082)
T ss_pred HHHHHHHCC----CeEecCCcEEEEEE
Confidence 999998763 66777788999876
No 95
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=89.95 E-value=0.56 Score=38.14 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=53.4
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|-|+|.++. +++.++. +.. .+..|+ .+...+.++...|.|.. .+.++..+..+.+.|+.
T Consensus 212 SK~~glaGlRiGy~i~---~~~~i~~----l~~-~~~~~~-v~~~~~~~a~~~L~~~~-----~~~~~~~~~~~~~~r~~ 277 (351)
T PRK01688 212 SKAFALAGLRCGFTLA---NEEVINL----LLK-VIAPYP-LSTPVADIAAQALSPQG-----IAAMRERVAEINANRQW 277 (351)
T ss_pred hHhhcCHHHHHhHHhC---CHHHHHH----HHh-ccCCCC-CCHHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHH
Confidence 3555 47899999763 3334333 332 244454 33445556666776543 12344556677777899
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
|.+.|++.+. +..+....|.|.+.-+
T Consensus 278 l~~~L~~~~~---~~~~~ps~~nfi~~~~ 303 (351)
T PRK01688 278 LIAALKEIPC---VEQVFDSETNYILARF 303 (351)
T ss_pred HHHHHHhCCC---CCeECCCCCcEEEEEc
Confidence 9999986532 3334456677776544
No 96
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=89.42 E-value=2.3 Score=34.25 Aligned_cols=87 Identities=16% Similarity=0.127 Sum_probs=52.2
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|-|+|.+.+ + ++. ...+... +..|+ .+..+..++..+|+++ .|. +.++..++..|+.
T Consensus 224 SK~~g~~G~RiG~l~~--~-~~~----~~~l~~~-~~~~~-~~~~~~~~a~~~l~~~----~~~---~~~~~~~~~~~~~ 287 (367)
T PRK02731 224 SKAYGLAGLRVGYGIA--P-PEI----IDALNRV-RQPFN-VNSLALAAAVAALDDD----AFV---EKSRALNAEGMAW 287 (367)
T ss_pred hHhhcCcccceeeeeC--C-HHH----HHHHHHc-cCCCC-CCHHHHHHHHHHhCCH----HHH---HHHHHHHHHHHHH
Confidence 5666 57899999753 3 223 3334332 33444 3456677788888764 353 3445566667778
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++.+ +... ...|.|....+
T Consensus 288 l~~~L~~~g----~~~~-~~~g~~~~i~~ 311 (367)
T PRK02731 288 LTEFLAELG----LEYI-PSVGNFILVDF 311 (367)
T ss_pred HHHHHHHCC----CccC-CCCceEEEEEC
Confidence 888888763 3333 34577777665
No 97
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=88.64 E-value=1.3 Score=35.62 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=48.7
Q ss_pred ccccc-cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIP-TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~-ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++. .|-|+|-++. + ++..+. +.. .+..|+.. .++...+.+.. +..-++.+++.+++.|+.
T Consensus 192 SK~~~l~GlRiGy~v~--~-~~li~~----l~~-~~~~~~~~-----~~~~~~l~~~~----~~~~~~~~~~~~~~~r~~ 254 (332)
T PRK06425 192 TKILGIPSLRIGYIAT--D-DYNMKI----SRK-ITEPWSVC-----DPAIDFIRSID----LDYVAKHSLDIMENERSY 254 (332)
T ss_pred HHhcCCchhhheeeec--C-HHHHHH----HHH-cCCCCccC-----HHHHHHHHHhh----hHHHHHHHHHHHHHHHHH
Confidence 67776 9999997653 2 333333 322 23334332 22223333221 222345678888888999
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++.+ |..+....|+|-+.-+
T Consensus 255 l~~~L~~~g----~~~~~~~~g~f~~~~~ 279 (332)
T PRK06425 255 LINNLEAMG----FRAAGDPSANFITFMI 279 (332)
T ss_pred HHHHHHHCC----CEECCCCCceEEEEEc
Confidence 999998763 4444344577765543
No 98
>PRK06225 aspartate aminotransferase; Provisional
Probab=88.59 E-value=5 Score=32.71 Aligned_cols=73 Identities=16% Similarity=0.181 Sum_probs=40.3
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|-|+|.+.+ +++..+. +.......|+. +..+..++...|... ..|.+.+ +..+++.|..
T Consensus 224 SK~~g~~G~RiG~i~~---~~~l~~~----~~~~~~~~~~~-~~~~~~~a~~~l~~~---~~~~~~~---~~~~~~~~~~ 289 (380)
T PRK06225 224 SKIFGMAGLRIGAVVA---TPDLIEV----VKSIVINDLGT-NVIAQEAAIAGLKVK---DEWIDRI---RRTTFKNQKL 289 (380)
T ss_pred hhhcCCccceeEEEec---CHHHHHH----HHHHHhcccCC-CHHHHHHHHHHHhcc---hHHHHHH---HHHHHHHHHH
Confidence 5667 58999998864 2333333 44333344443 444555555556532 3555444 4444555666
Q ss_pred HHHHHHhc
Q psy9326 93 LRERLEKL 100 (125)
Q Consensus 93 L~~~L~~~ 100 (125)
+.+.|++.
T Consensus 290 l~~~L~~~ 297 (380)
T PRK06225 290 IKEAVDEI 297 (380)
T ss_pred HHHHHHhC
Confidence 77777763
No 99
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=88.58 E-value=1 Score=36.19 Aligned_cols=69 Identities=16% Similarity=0.070 Sum_probs=42.0
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|-|+|.+.. + + ++...+... +..|+ .+..+..++...|.+. .| ++.++++++..|..
T Consensus 222 SK~~g~~GlRiG~~~~--~-~----~~~~~~~~~-~~~~~-~~~~~~~~a~~~l~~~----~~---~~~~~~~~~~~r~~ 285 (361)
T PRK00950 222 SKVFGLAGLRIGYGFV--P-E----WLIDYYMRA-KTPFS-LTRLSQAAAIAALSDK----EY---IEKSIEHGIKSREY 285 (361)
T ss_pred hHhhcCchhhcchhcC--C-H----HHHHHHHHh-cCCCC-CCHHHHHHHHHHhcCH----HH---HHHHHHHHHHHHHH
Confidence 5667 58999998752 2 2 233333333 33444 4455667777777763 34 34456777787888
Q ss_pred HHHHHH
Q psy9326 93 LRERLE 98 (125)
Q Consensus 93 L~~~L~ 98 (125)
|.+.|.
T Consensus 286 l~~~l~ 291 (361)
T PRK00950 286 LYNELP 291 (361)
T ss_pred HHhhcC
Confidence 887774
No 100
>PRK03321 putative aminotransferase; Provisional
Probab=87.48 E-value=2.1 Score=34.34 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=48.8
Q ss_pred ccccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 13 ESYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 13 ~~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
-||++ +.|-|+|.+.+ +++..+. +... +..|+ ++..+...+...|.+ ...|.+.++.+ .+.|.
T Consensus 214 ~SK~~g~~GlRiG~~v~---~~~~~~~----~~~~-~~~~~-~s~~~q~~a~~~l~~---~~~~~~~~~~~----~~~r~ 277 (352)
T PRK03321 214 FSKAYGLAGLRVGYAVG---HPEVIAA----LRKV-AVPFS-VNSLAQAAAIASLAA---EDELLERVDAV----VAERD 277 (352)
T ss_pred chHHhhhHHHhhhhhcC---CHHHHHH----HHHh-cCCCC-CCHHHHHHHHHHhcC---HHHHHHHHHHH----HHHHH
Confidence 37787 48999999763 2333333 3333 23343 344455545555553 23455444433 34467
Q ss_pred HHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 92 GLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 92 ~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
.+.+.|++.+ |.. ....|+|-+..+
T Consensus 278 ~~~~~L~~~~----~~~-~~~~g~~i~i~l 302 (352)
T PRK03321 278 RVRAALRAAG----WTV-PPSQANFVWLPL 302 (352)
T ss_pred HHHHHHHHCC----Ccc-CCCCCCEEEEeC
Confidence 7888888753 443 234588877655
No 101
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=86.40 E-value=2.6 Score=33.96 Aligned_cols=86 Identities=17% Similarity=0.193 Sum_probs=41.0
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHH-hhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVR-AMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R-~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+..|-|+|++.. + ++ +.+.+....+ ..|+. |..++..+...|+. + + -..++++++++|+.
T Consensus 238 sK~~~~G~riG~~~~--~-~~----~~~~~~~~~~~~~~~~-~~~~~~aa~aaL~~--~-----~-~~~~~~~~~~~~~~ 301 (379)
T TIGR00707 238 AKGLGGGVPIGATLA--K-EE----VAEAFTPGDHGSTFGG-NPLACAAALAVLEV--I-----E-KERLLENVKEKGDY 301 (379)
T ss_pred cccccCCcccEEEEE--c-HH----HHhhhcCCCCCCCCCC-CHHHHHHHHHHHHH--H-----H-hhhHHHHHHHHHHH
Confidence 677777889998543 2 22 3333433222 34443 33445555544431 1 0 12344555555666
Q ss_pred HHHHHHhcCCCCCCccccccccce
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMF 116 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMF 116 (125)
+.+.|++.+....+..+.. .|.|
T Consensus 302 ~~~~l~~~~~~~~~~~~~~-~g~~ 324 (379)
T TIGR00707 302 FKERLEELGKNYPNKEVRG-KGLM 324 (379)
T ss_pred HHHHHHHHHhhCCCCcccc-CceE
Confidence 6666654433223333333 3544
No 102
>PRK09275 aspartate aminotransferase; Provisional
Probab=85.12 E-value=3 Score=36.97 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 79 IETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 79 L~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+++|+++++..|..|++.| +. .+.....+-|+|.+..+
T Consensus 405 ~~~~~~~~~~Rr~~l~~~L---g~--~~~~~~p~g~fY~~~di 442 (527)
T PRK09275 405 KKAMKDIIRRRYKALYEGL---GL--PEPEDPNNAAYYTLIDL 442 (527)
T ss_pred HHHHHHHHHHHHHHHHHHc---CC--CCcCCCCCeeEEEEEEh
Confidence 5567788888788888877 21 23334567778877654
No 103
>KOG0634|consensus
Probab=83.48 E-value=4.6 Score=35.48 Aligned_cols=100 Identities=18% Similarity=0.201 Sum_probs=66.0
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGL 93 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L 93 (125)
|+++..|-|.|-+..-. -..+++.+..+. +-+.|...-..||..+|+ .-..+-|.+=+.+.+.-=...|..+
T Consensus 294 SKiiaPGlRlG~it~~~---~~l~ril~~ae~----~t~~pSg~sq~iv~a~l~-~wgqeG~~~wi~~l~~~Yt~Rrn~~ 365 (472)
T KOG0634|consen 294 SKIIAPGLRLGWITGNS---LFLKRILDLAEV----ATSGPSGFSQGIVYAMLK-RWGQEGFLRWIQHLRSSYTERRNAL 365 (472)
T ss_pred hhhhcCcceeEEeecCH---HHHHHHhhhcce----eecCcccccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999877632 234444443333 334488888999998887 3333323333555555556678888
Q ss_pred HHHHHhcCCCCCCccccccccceeecCC
Q psy9326 94 RERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 94 ~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
..+|.+.=+..-...+----|||-..-+
T Consensus 366 l~Al~kylp~~~~~~~~P~aGmFiwv~i 393 (472)
T KOG0634|consen 366 LSALDKYLPKSVCEYHPPKAGMFIWVEI 393 (472)
T ss_pred HHHHHHhCCCCeeEEecCCcceEEEEEe
Confidence 8899876555446666667899976654
No 104
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=80.85 E-value=5.9 Score=35.04 Aligned_cols=39 Identities=8% Similarity=0.100 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 79 IETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 79 L~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
+++++.++++.|..|++.| |. .+.....+-|+|.+.-+.
T Consensus 404 ~~~~~~~~~~R~~~l~~~L---g~--~~~~~~~~g~~Y~~~di~ 442 (521)
T TIGR03801 404 KAETKDICRRREKLLFRGL---GL--PLQEDPNDVAYYTLIDLE 442 (521)
T ss_pred HHHHHHHHHHHHHHHHHhc---CC--CCcCCCCCeEEEEEeehH
Confidence 4445678888788888887 22 233445677898887664
No 105
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=80.83 E-value=3.3 Score=34.04 Aligned_cols=87 Identities=10% Similarity=0.143 Sum_probs=51.4
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||++ +.|-|+|.++ + +++ +...+..+ +..| ++|..+...+...|.+. .|.+++..+. ++.|+.
T Consensus 221 SK~~~l~GlRiG~~i--~-~~~----~~~~l~~~-~~~~-~~~~~~q~aa~~~l~~~----~~~~~~~~~~---~~~r~~ 284 (366)
T PRK01533 221 SKAYGLASFRVGYAV--G-HEE----LIEKLNVV-RLPF-NVSSLAQKAATIAFGDD----EFIEEIVRVN---TEGLRQ 284 (366)
T ss_pred hHHhcChHHHHhHHh--C-CHH----HHHHHHHh-cCCC-CcCHHHHHHHHHHhCCH----HHHHHHHHHH---HHHHHH
Confidence 6777 5999999874 2 233 33334443 4455 56677888888999874 4666664433 334555
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|++.+ +.... ..|.|-+.-+
T Consensus 285 ~~~~l~~~g----~~~~~-~~~nf~~~~~ 308 (366)
T PRK01533 285 YESFCKENE----IPFYQ-SQTNFIFLPV 308 (366)
T ss_pred HHHHHHhCC----CccCC-CcCcEEEEeC
Confidence 556666554 33333 3466766544
No 106
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=79.49 E-value=4.2 Score=33.68 Aligned_cols=92 Identities=14% Similarity=0.185 Sum_probs=44.4
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHH-HHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITL-IVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~-i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+.-|-|+|++.. ++ .+...+.. ..-.+|+.+|.. +..+...|+- + +. .++.++++++|+.
T Consensus 252 sK~l~~G~rig~vv~---~~----~i~~~l~~~~~~~t~~~~~~~-~~aa~a~L~~--~---~~---~~~~~~~~~~~~~ 315 (403)
T PRK05093 252 AKALGGGFPIGAMLT---TA----EIASHFKVGTHGSTYGGNPLA-CAVAEAVFDI--I---NT---PEVLEGVKARRQR 315 (403)
T ss_pred cccccCCcceEEEEE---cH----HHHhhcCCCCCCCCCCCCHHH-HHHHHHHHHH--H---hh---ccHHHHHHHHHHH
Confidence 677777889998775 12 23333332 122466655544 3333332321 1 11 1233556666777
Q ss_pred HHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
|.+.|++.+....+..-....|+|....|
T Consensus 316 l~~~L~~~~~~~~~~~~~~~~G~~~~~~l 344 (403)
T PRK05093 316 FVDGLQKINQKYGVFSEIRGMGLLIGAEL 344 (403)
T ss_pred HHHHHHHHHhhCCCeEeEeeCceEEEEEe
Confidence 77777765432112122334566554433
No 107
>PRK08354 putative aminotransferase; Provisional
Probab=74.63 E-value=9.3 Score=30.40 Aligned_cols=66 Identities=14% Similarity=0.172 Sum_probs=38.1
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+ +.|-|+|.++. ..+ .++. .+..|+..+ .+..++..++.+. . +++...++.+.+.|+.
T Consensus 181 SK~~~l~GlRiG~~v~------~~~----~l~~-~~~~~~~~~-~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~ 242 (311)
T PRK08354 181 TKSYGLPGIRVGYVKG------FEE----AFRS-VRMPWSIGS-TGYAFLEFLIEDD-F-----EHLRKTMPLIWREKER 242 (311)
T ss_pred HhhcCCccceeeeeee------hHH----HHHH-cCCCccCCH-HHHHHHHHHHHhH-H-----HHHHHHHHHHHHHHHH
Confidence 6777 49999998876 122 2332 234455444 4466777776632 1 3444556666666666
Q ss_pred HHHHH
Q psy9326 93 LRERL 97 (125)
Q Consensus 93 L~~~L 97 (125)
+.+.|
T Consensus 243 l~~~l 247 (311)
T PRK08354 243 FEKAL 247 (311)
T ss_pred HHHhc
Confidence 65554
No 108
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=74.47 E-value=18 Score=29.83 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 78 CIETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 78 EL~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
.++.+.+++.++|+.+.+.|++.|
T Consensus 280 ~~~~~~~~~~~~~~~l~~~L~~~g 303 (416)
T PRK00011 280 EFKEYAQQVVKNAKALAEALAERG 303 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 467788899999999999998754
No 109
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=73.85 E-value=4.4 Score=33.03 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=34.9
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGL 93 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L 93 (125)
||.+.-|-|+|++. + +++..+.+ .......-.+|+.+|..-+ .+...|+ +.++ ..+.+++.++++.|
T Consensus 259 sK~l~~g~~~g~~~--~-~~~~~~~~-~~~~~~~~~t~~~~~~~~~-a~~a~l~-------~l~~-~~~~~~~~~~~~~l 325 (413)
T cd00610 259 GKGLGGGLPLGAVL--G-REEIMDAF-PAGPGLHGGTFGGNPLACA-AALAVLE-------VLEE-EGLLENAAELGEYL 325 (413)
T ss_pred cccccCccccEEEE--E-cHHHHHhh-ccCCCCCCCCCCcCHHHHH-HHHHHHH-------HHHh-ccHHHHHHHHHHHH
Confidence 45566677888863 2 23333332 0011112246666665422 3322221 1111 24456666666666
Q ss_pred HHHHHhcC
Q psy9326 94 RERLEKLN 101 (125)
Q Consensus 94 ~~~L~~~~ 101 (125)
.+.|++..
T Consensus 326 ~~~l~~~~ 333 (413)
T cd00610 326 RERLRELA 333 (413)
T ss_pred HHHHHHHH
Confidence 66666543
No 110
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=66.27 E-value=63 Score=26.26 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc-ccccceeecCC
Q psy9326 78 CIETMSGRIKQMRRGLRERLEKLNTPGTWNHIT-EQIGMFSYTGL 121 (125)
Q Consensus 78 EL~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~-~Q~GMFs~~gL 121 (125)
+.+..++++.+.|..+.+.|.+.| |..+. .+.++|.+.-+
T Consensus 276 ~~~~~~~~~~~~~~~l~~~L~~~g----~~~~~~~~~~~~v~v~~ 316 (402)
T cd00378 276 EFKAYAKQVVENAKALAEALKERG----FKVVSGGTDNHLVLVDL 316 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC----CeEeecCCCCeEEEEeC
Confidence 556677788888999999998764 33332 23455554444
No 111
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=62.89 E-value=23 Score=28.81 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=47.8
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHH-HHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITL-IVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~-i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+.-|-|+|++.+- ++ +...+.. ..-++|+.+|. ++.++..+|+.-+ ..+-++.++.+....|+.
T Consensus 233 sK~l~~G~~ig~~~~~---~~----~~~~~~~~~~~~t~~~~~~-~~~aa~a~l~~~~----~~~~~~~~~~~~~~~~~~ 300 (375)
T PRK04260 233 AKGLANGVPVGAMLAK---SS----LGGAFGYGSHGSTFGGNKL-SMAAASATLDIML----TAGFLEQALENGNYLQEQ 300 (375)
T ss_pred cccccCCcceEEEEEc---HH----HHhhcCCCCCCCCCCcCHH-HHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHH
Confidence 5666667899988772 22 2222221 12245554444 4666666664322 123345667777777877
Q ss_pred HHHHHHhcCCCCCCccccccccceeec
Q psy9326 93 LRERLEKLNTPGTWNHITEQIGMFSYT 119 (125)
Q Consensus 93 L~~~L~~~~~~~~w~~i~~Q~GMFs~~ 119 (125)
|.+.+.+.+ .+.++.. .|+|..+
T Consensus 301 l~~~~~~~~---~~~~~~~-~g~~~~~ 323 (375)
T PRK04260 301 LQKALQDKE---TVTTVRG-LGYMIGI 323 (375)
T ss_pred HHHHHhhCC---CeeEEec-cceEEEE
Confidence 777776542 2333322 5666544
No 112
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=60.73 E-value=31 Score=28.87 Aligned_cols=72 Identities=22% Similarity=0.289 Sum_probs=48.7
Q ss_pred cccc-ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSI-PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~-~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.| +-|-|+|-. + .+++.++.+. ..|.-|+.+ ..+..++...|.|. +.+++.+.++..-|+.
T Consensus 211 SKa~gLAGlRlGy~--i-a~~~~i~~l~-----~vr~p~~v~-~~a~~aa~aal~~~-------~~~~~~~~~~~~~r~r 274 (356)
T COG0079 211 SKAFGLAGLRVGYA--I-ANPELIAALN-----KVRPPFNVS-SPALAAAIAALRDA-------DYLEESVERIREERER 274 (356)
T ss_pred HHhhhcchhceeec--c-CCHHHHHHHH-----HhcCCCCCC-HHHHHHHHHHcccH-------HHHHHHHHHHHHHHHH
Confidence 3444 557999982 2 3444444333 357777654 44456667777765 6677788899999999
Q ss_pred HHHHHHhcC
Q psy9326 93 LRERLEKLN 101 (125)
Q Consensus 93 L~~~L~~~~ 101 (125)
|++.|+..+
T Consensus 275 l~~~l~~~~ 283 (356)
T COG0079 275 LYAALKALG 283 (356)
T ss_pred HHHHHHhCC
Confidence 999999865
No 113
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=60.43 E-value=15 Score=28.17 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=26.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 69 PRLYDQWKQCIETMSGRIKQMRRGLRERLE 98 (125)
Q Consensus 69 p~L~~~W~~EL~~m~~RI~~~R~~L~~~L~ 98 (125)
++=+++|..||.++-+-|..+|+-|..+-+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer 57 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKER 57 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445899999999999999999999987654
No 114
>PLN02452 phosphoserine transaminase
Probab=60.24 E-value=21 Score=29.85 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=38.7
Q ss_pred HhhcCCCcchHHHHHHHHhCCHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Q psy9326 48 RAMYSNPPSHGARIVSLVLNNPRLYDQWKQC---IETMSGRIKQMRRGLRERLEKL 100 (125)
Q Consensus 48 R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~E---L~~m~~RI~~~R~~L~~~L~~~ 100 (125)
..+|.+||.++...+...|. |..| ++.+.+|-+++.+.|++.|++.
T Consensus 237 ~s~~~TP~v~~i~~l~~aL~-------~l~~~gGl~~~~~r~~~~a~~l~~~l~~~ 285 (365)
T PLN02452 237 DSLYNTPPCFGIYMCGLVFE-------DLLAQGGLKAMEKRNIRKADLLYDAIDES 285 (365)
T ss_pred CCccCChhHHHHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 36677999999988888876 6654 8899999999999999999874
No 115
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=58.48 E-value=20 Score=30.19 Aligned_cols=90 Identities=17% Similarity=0.049 Sum_probs=44.6
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGL 93 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L 93 (125)
+|.+.-|-|+|++.. +++..+.+.. ...-.+|+.+|.. +..+..+|+ .+. + +.+.++++++++.|
T Consensus 266 sK~l~~G~pigav~~---~~~i~~~~~~---~~~~~T~~~~p~~-~aaa~a~L~--~~~-----~-~~l~~~~~~~g~~l 330 (421)
T PRK06777 266 AKSLGGGMPISAVVG---RAEVMDAPAP---GGLGGTYAGNPLA-VAAALAVLD--VIA-----E-EKLCQRALILGAHL 330 (421)
T ss_pred ehhhcCCCceEEEEE---cHHHHhccCC---CCCCCCCCcCHHH-HHHHHHHHH--HHH-----h-ccHHHHHHHHHHHH
Confidence 555666678887654 2222222211 1112566655554 444555553 111 1 34566777777777
Q ss_pred HHHHHhcCCCCCCccccccccceee
Q psy9326 94 RERLEKLNTPGTWNHITEQIGMFSY 118 (125)
Q Consensus 94 ~~~L~~~~~~~~w~~i~~Q~GMFs~ 118 (125)
.+.|++......+-.-.+..|+|..
T Consensus 331 ~~~L~~l~~~~~~i~~vrg~G~~~~ 355 (421)
T PRK06777 331 VEVLEKAKASCPAIVDIRARGSMVA 355 (421)
T ss_pred HHHHHHHHHhCCCeEEecCceEEEE
Confidence 7777665332222222455666554
No 116
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli []. The enzyme is NADH-dependent and uses FAD as the redox chromophore. The domain is also found in pyoverdin chromophore biosynthetic protein (PvcC), which may play a role in one of the proposed hydroxylation steps of pyoverdine chromophore biosynthesis [] and in 4-hydroxybutyryl-CoA dehydratase (4-BUDH), a key enzyme in the metabolism of gamma-aminobutyrate [].; PDB: 3HWC_D 1U8V_D 2YYM_A 2YYI_A 2YYJ_A 2YYL_A 2YYG_A 2YYK_A.
Probab=58.00 E-value=21 Score=29.03 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=52.9
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCC---CcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHH
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSN---PPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQ 88 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~---PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~ 88 (125)
..|||++....+-++.+...+=...++.++|.++.+ .|.+-+.++...-..++....+.+-+..+.+++++
T Consensus 61 ~~g~~v~~~~~~p~s~eDL~~rr~~~~~~a~~t~G~~gR~pD~~n~~~~~~~~~~~~~~~y~~n~~~y~~~~~~ 134 (264)
T PF11794_consen 61 ETGERVSRSFHIPRSKEDLVKRRKAIREWARYTGGCMGRSPDYMNALLAGLAAAADFFGTYAENIRRYYEYVQE 134 (264)
T ss_dssp TTTCEEEGGG----SHHHHHHHHHHHHHHHHHCCC--STCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhhcccCCCHHHHHHHHHHHHHHHHHcCceeecChhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 468899999999999998888888899999999987 58888888888888888777766666666655554
No 117
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=56.91 E-value=7.6 Score=26.91 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=25.9
Q ss_pred cccccCCc--cceEEEEcCCCCcHHHHHHHHHH
Q psy9326 15 YSIPTDER--IGNLTLVLKDKSHIPAVKSQITL 45 (125)
Q Consensus 15 ~~~~ygeR--vGal~vV~~~~~~a~~v~sql~~ 45 (125)
..+.||.. .-.|++|++|++.++....-|..
T Consensus 82 fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 82 FTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 46779988 99999999999999888776654
No 118
>PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors. Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y ....
Probab=56.90 E-value=33 Score=24.11 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=29.3
Q ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9326 67 NNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKL 100 (125)
Q Consensus 67 ~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~ 100 (125)
+||++++.-.+|++....+|..+...+.+.|-..
T Consensus 7 ~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~ 40 (115)
T PF03462_consen 7 EDEEMRELAEEEIEQLEEELEELEKELLDSLLPS 40 (115)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999988777543
No 119
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=55.91 E-value=11 Score=23.94 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy9326 73 DQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTW 106 (125)
Q Consensus 73 ~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~~~w 106 (125)
++|.++|+++...|+..|..|...+-=+-.+.+|
T Consensus 3 ~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~w 36 (57)
T PF12592_consen 3 EEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEW 36 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHH
Confidence 5799999999999999999888765433333333
No 120
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=55.22 E-value=26 Score=28.42 Aligned_cols=46 Identities=15% Similarity=0.160 Sum_probs=23.6
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHH-HHHhhcCCCcchHHHHHHHHhC
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITL-IVRAMYSNPPSHGARIVSLVLN 67 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~-i~R~~yS~PP~~Ga~IV~~IL~ 67 (125)
||.+.-|-|+|++.. + ++ +...+.. ....+|+.+|. ++..+...|+
T Consensus 250 sK~~~~G~rig~~~~--~-~~----~~~~~~~~~~~~t~~~~~~-~~~aa~~~l~ 296 (396)
T PRK02627 250 AKGLGGGVPIGAVLA--K-EK----VADVFTPGDHGSTFGGNPL-ACAAALAVIE 296 (396)
T ss_pred cchhhCCcccEEEEE--c-HH----HHhccCCCCCCCCCCCCHH-HHHHHHHHHH
Confidence 556666778999664 2 22 2222322 12346655544 4555555554
No 121
>PLN00144 acetylornithine transaminase
Probab=53.86 E-value=26 Score=29.12 Aligned_cols=90 Identities=13% Similarity=0.196 Sum_probs=41.6
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHH---HHhCCHhhHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVS---LVLNNPRLYDQWKQCIETMSGRIKQMR 90 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~---~IL~dp~L~~~W~~EL~~m~~RI~~~R 90 (125)
+|.+.-|-|+|++.+ +++..+.+.. ...=.+|+.+|.. +.++. .++.+++ +.+-++.+...+ |
T Consensus 235 sK~l~~G~pig~v~~---~~~~~~~~~~---~~~~~T~~~~pl~-~aaa~a~l~~i~~~~----~~~~~~~~g~~l---~ 300 (382)
T PLN00144 235 AKPLAGGLPIGAVLV---TEKVASAINP---GDHGSTFAGGPLV-CNAALAVLDKISKPG----FLASVAKKGEYL---R 300 (382)
T ss_pred cccccCCcceEEEEE---cHHHHhccCC---CCCCCCCCCCHHH-HHHHHHHHHHHhhch----HHHHHHHHHHHH---H
Confidence 455666778888776 2223332221 0112477766666 44555 3444433 333444444443 3
Q ss_pred HHHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 91 RGLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 91 ~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.|.+.+.+. | ....+. ..|+|.-+-|
T Consensus 301 ~~l~~~~~~~--~-~~~~vr-g~G~~~~l~l 327 (382)
T PLN00144 301 ELLRRKLGGN--P-HVKEVR-GVGLLVGIQL 327 (382)
T ss_pred HHHHHHHhhC--C-Cceeee-cCceEEEEEe
Confidence 3333333333 2 122322 3777765433
No 122
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=51.58 E-value=40 Score=28.55 Aligned_cols=48 Identities=27% Similarity=0.453 Sum_probs=39.2
Q ss_pred HHhhcCCCcchHHHHHHHHhCCHhhHHHHHH-H---HHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 47 VRAMYSNPPSHGARIVSLVLNNPRLYDQWKQ-C---IETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 47 ~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~-E---L~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
..++|.+||.+.-.++..+|. |.. | |+.+.+|-++..+.|++.+.+..
T Consensus 234 ~~s~~nTPpv~~iy~l~~~l~-------~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~ 285 (364)
T PRK12462 234 HRSNYNTPPVFAIYVMALVLR-------WIRDEIGGVHAMRDINARKAAMLYATLDALN 285 (364)
T ss_pred cCCCCCCchHHHHHHHHHHHH-------HHHHhccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 346888999999988888877 763 3 68889999999999999998754
No 123
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=51.14 E-value=33 Score=21.58 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q psy9326 71 LYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITE 111 (125)
Q Consensus 71 L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~~ 111 (125)
-+..+.++++..+..-...+.+|++.++.+....+|....+
T Consensus 17 ~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l~~~~d~~~~~~ 57 (77)
T PF03993_consen 17 RRKEFFEEQDAEREENLEKKEALIEEAEALAESEDWKEAAE 57 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 45678888888888888889999999998888777765543
No 124
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=50.95 E-value=66 Score=27.85 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=43.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy9326 25 NLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKL 100 (125)
Q Consensus 25 al~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~ 100 (125)
|..++.+|++..+++.+.|+ |..-..|...|..-...-.++ . +.|++||.++ |+..|.-+.+.|.+.
T Consensus 241 ~a~~Ii~n~~lr~~~~~~l~---~~~~~~~n~lg~~A~~aAY~~-G--~~WLd~L~~y---l~~N~~~~~~~l~~~ 307 (388)
T COG1168 241 CAYIIISNRELRAKFLKRLK---RNGLHGPSALGIIATEAAYNQ-G--EPWLDELLEY---LKDNRDYVADFLNKH 307 (388)
T ss_pred heeEEecCHHHHHHHHHHHH---HhcCCCCchHHHHHHHHHHHh-c--hHHHHHHHHH---HHHHHHHHHHHHHhh
Confidence 33445566666666666555 566677888876444444442 2 6899999886 556677777777665
No 125
>cd00186 TOP1Ac DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA and then rejoin the broken phosphodiester backbone. Proposed catalytic mechanism of single stranded DNA cleavage is by phosphoryl transfer through a tyrosine nucleophile using acid/base catalysis. Tyr is activated by a nearby group (not yet identified) acting as a general base for nucleophilic attack on the 5' phosphate of the scissile bond. Arg and Lys stabilize the pentavalent transition state. Glu then acts as a proton donor for the leaving 3'-oxygen, upon cleavage of the scissile strand.
Probab=50.82 E-value=20 Score=30.14 Aligned_cols=34 Identities=15% Similarity=0.363 Sum_probs=28.1
Q ss_pred CCCcchHHHHHHHH------hCCHhhHHHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV------LNNPRLYDQWKQCIETMSGR 85 (125)
Q Consensus 52 S~PP~~Ga~IV~~I------L~dp~L~~~W~~EL~~m~~R 85 (125)
-.|..-|..++..+ +.||++.+.|+++|+.+..-
T Consensus 323 l~pT~~G~~li~~l~~~~~~l~~p~lTa~~E~~L~~I~~G 362 (381)
T cd00186 323 LIPTELGFAVIELLEKHFPELVDPEFTAKLEEKLDEIAEG 362 (381)
T ss_pred EeECHHHHHHHHHHHHhchhccCHhHHHHHHHHHHHHHcC
Confidence 44777788887776 79999999999999998754
No 126
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=49.97 E-value=33 Score=28.50 Aligned_cols=72 Identities=21% Similarity=0.242 Sum_probs=36.2
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHH-hhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVR-AMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R-~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
+|.+.-|-|+|++.. + +.+.+.+..... .+|+.+|.. +..+..+|+ .+ + -..++++++++++.
T Consensus 251 sK~l~gG~~ig~~~~--~-----~~~~~~~~~~~~~~t~~~~pl~-~aaa~a~l~--~l---~---~~~~~~~~~~~~~~ 314 (406)
T PRK12381 251 AKALGGGFPIGAMLT--T-----EKCASVMTVGTHGTTYGGNPLA-SAVAGKVLE--LI---N---TPEMLNGVKQRHDW 314 (406)
T ss_pred hhhhhCCCceEEEEE--c-----HHHHhhcCCCCCCCCCCCCHHH-HHHHHHHHH--HH---h---hccHHHHHHHHHHH
Confidence 444545677777664 1 223333332222 345544444 444444332 11 1 12456777777777
Q ss_pred HHHHHHhcC
Q psy9326 93 LRERLEKLN 101 (125)
Q Consensus 93 L~~~L~~~~ 101 (125)
|.+.|++.+
T Consensus 315 l~~~L~~l~ 323 (406)
T PRK12381 315 FVERLNTIN 323 (406)
T ss_pred HHHHHHHHH
Confidence 777777654
No 127
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=49.17 E-value=51 Score=27.80 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=21.8
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHH-hhcCCCcchHHHHHHHHh
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVR-AMYSNPPSHGARIVSLVL 66 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R-~~yS~PP~~Ga~IV~~IL 66 (125)
+|.+.-|-|+|++.+ + ++..+. +....+ .+|+.+|.. +.++..+|
T Consensus 255 ~K~l~~G~piga~~~--~-~~~~~~----~~~~~~~~t~~~~p~~-~aaa~a~L 300 (408)
T PRK04612 255 AKALGGGFPIGAMLA--G-PKVAET----MQFGAHGTTFGGNPLA-AAVARVAL 300 (408)
T ss_pred cchhcCCCceEEEEE--C-HHHHhh----hcCCCcCCCCCCCHHH-HHHHHHHH
Confidence 455666678887643 2 222222 222222 467665554 44444444
No 128
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=47.90 E-value=82 Score=27.12 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=36.7
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQ 74 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~ 74 (125)
|+-=+.|+|||-.+. | ++|-+.++++.--.--.|-+.|+.|++..++.-+|...
T Consensus 248 SK~GLPG~R~GIiIa---n----e~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rl 301 (417)
T COG3977 248 SKLGLPGSRCGIIIA---N----EKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRL 301 (417)
T ss_pred hhcCCCCcceeEEEc---c----HHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHH
Confidence 556678999996543 3 33444444444333456889999999999998877654
No 129
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=47.71 E-value=27 Score=27.63 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=14.5
Q ss_pred HhhHHHHHHHHHHHHHH
Q psy9326 69 PRLYDQWKQCIETMSGR 85 (125)
Q Consensus 69 p~L~~~W~~EL~~m~~R 85 (125)
..|+.+|.+||..+.+.
T Consensus 95 ~ALF~EWe~EL~~Y~~~ 111 (201)
T PF11172_consen 95 DALFDEWEQELDQYSNA 111 (201)
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 56899999999998765
No 130
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=47.39 E-value=48 Score=27.99 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=35.6
Q ss_pred hhcCCCcchHHHHHHHHhCCHhhHHHHH-HH--HHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 49 AMYSNPPSHGARIVSLVLNNPRLYDQWK-QC--IETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 49 ~~yS~PP~~Ga~IV~~IL~dp~L~~~W~-~E--L~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
.++.+||.++-......|. |. +| |+.+..|-..+.+.|++.++++|
T Consensus 235 ~t~~TP~v~~l~a~~~~l~-------~i~~egGle~~~~Rh~~~a~~l~~~l~~lg 283 (374)
T TIGR01365 235 STINTPSMLCVEDWLDALK-------WAESIGGLKPLIARADDNLAVLEAFVAKNN 283 (374)
T ss_pred CCCCChHHHHHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4677888877766555553 43 33 99999999999999999999877
No 131
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=47.36 E-value=1.5e+02 Score=23.78 Aligned_cols=69 Identities=17% Similarity=0.139 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHhC--------CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 31 KDKSHIPAVKSQITLIVRAMYS-NPPSHGARIVSLVLN--------NPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 31 ~~~~~a~~v~sql~~i~R~~yS-~PP~~Ga~IV~~IL~--------dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
.|++..+.+..+-+.- -.+. -||.-|..+...+.. +|...+...+||++ |++-|.+..++|++.|
T Consensus 141 ~d~~eve~il~~~e~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~sF~~~l~~ql~~----l~~~r~e~~~~~~~k~ 214 (219)
T PRK13415 141 EDEKEIEEILAQHEER--LESKAEWSRWGQKLRDQWKGKSKQKQTTLPSFSALLKEELKE----LKEKRSEGLKRLKKKG 214 (219)
T ss_pred CCHHHHHHHHHHHHHh--hhhhhchHHHHHHHHHhhhccccCCCCCCccHHHHHHHHHHH----HHHHHHHHHHHHHhcc
Confidence 4555566655443332 1111 255667777777763 23444555555555 4556999999999988
Q ss_pred CCCC
Q psy9326 102 TPGT 105 (125)
Q Consensus 102 ~~~~ 105 (125)
+.++
T Consensus 215 ~~~~ 218 (219)
T PRK13415 215 TAHD 218 (219)
T ss_pred cccC
Confidence 8764
No 132
>smart00742 Hr1 Rho effector or protein kinase C-related kinase homology region 1 homologues. Alpha-helical domain found in vertebrate PRK1 and yeast PKC1 protein kinases C. The HR1 in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Also called RBD - Rho-binding domain
Probab=46.26 E-value=68 Score=19.65 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=33.1
Q ss_pred chHHHHHHHHhCCHh-hHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 56 SHGARIVSLVLNNPR-LYDQWKQCIETMSGRIKQMRRGLR 94 (125)
Q Consensus 56 ~~Ga~IV~~IL~dp~-L~~~W~~EL~~m~~RI~~~R~~L~ 94 (125)
..||.-+...++|+. ...+...++.+-..+|.-+|..|.
T Consensus 17 ~~Gae~m~~~~~~~~k~~~~a~~~l~es~~ki~~L~~~L~ 56 (57)
T smart00742 17 KEGAENMRKLTSNDRKVLSEAQSMLRESNQKLDLLKEELE 56 (57)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 368888888899887 999999999999999998887663
No 133
>PF08565 CDC37_M: Cdc37 Hsp90 binding domain; InterPro: IPR013874 Cdc37 is a molecular chaperone required for the activity of numerous eukaryotic protein kinases. This entry corresponds to the Hsp90 chaperone (heat shock protein 90) binding domain of Cdc37 []. It is found between the N-terminal Cdc37 domain IPR013855 from INTERPRO, which is predominantly involved in kinase binding, and the C-terminal domain of Cdc37 IPR013873 from INTERPRO whose function is unclear. ; PDB: 1US7_B 2W0G_A 2K5B_B.
Probab=45.99 E-value=1.3e+02 Score=22.84 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=37.1
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHhC--CHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 43 ITLIVRAMYSNPPSHGARIVSLVLN--NPRLYDQWKQCIETMSGRIKQMRRGLR 94 (125)
Q Consensus 43 l~~i~R~~yS~PP~~Ga~IV~~IL~--dp~L~~~W~~EL~~m~~RI~~~R~~L~ 94 (125)
+..++.+.-.+|+..=..-..+|.. +|+-++...+||+....||+. |....
T Consensus 113 i~eLak~~~~~pr~~v~~FF~r~~~~~~~~~~~~F~~dv~~~~~rIk~-Ra~~~ 165 (173)
T PF08565_consen 113 IRELAKSLKRDPRDGVRLFFKRIKTPGHPEAKKVFEDDVEAFYERIKE-RAKEK 165 (173)
T ss_dssp HHHHHHHHTS-GGGCHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3345555666775555555677777 788999999999999999999 76554
No 134
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=45.80 E-value=1.5e+02 Score=23.71 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 79 IETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 79 L~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
.+.++.+++++|+.+.+.|.+.+
T Consensus 295 ~~~~~~~~~~~~~~l~~~L~~~~ 317 (397)
T PRK06939 295 SDELRDRLWENARYFREGMTAAG 317 (397)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcC
Confidence 34678888888888999988763
No 135
>PRK14724 DNA topoisomerase III; Provisional
Probab=44.56 E-value=29 Score=33.21 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=26.8
Q ss_pred CCCcchHHHHHHHH-------hCCHhhHHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV-------LNNPRLYDQWKQCIETMSG 84 (125)
Q Consensus 52 S~PP~~Ga~IV~~I-------L~dp~L~~~W~~EL~~m~~ 84 (125)
-.|..-|-.++..+ |.+|+|.++|+.+|+.+..
T Consensus 565 l~pT~~G~~li~~L~~~~~~~l~~pelTa~wE~~L~~I~~ 604 (987)
T PRK14724 565 LIPTAKAFQLMTLLRGLGVEELSRAELTGEWEYKLAQMEK 604 (987)
T ss_pred EeEcHHHHHHHHHHHhcCchhhcChhHHHHHHHHHHHHHh
Confidence 45667788787777 7899999999999988754
No 136
>PF06290 PsiB: Plasmid SOS inhibition protein (PsiB); InterPro: IPR009385 This family consists of several plasmid SOS inhibition protein (PsiB) sequences [].; PDB: 3NCT_B.
Probab=43.77 E-value=47 Score=24.93 Aligned_cols=52 Identities=21% Similarity=0.204 Sum_probs=32.8
Q ss_pred HHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCccccccccc
Q psy9326 64 LVLNNPRLYDQWKQCIETMSGRIKQMRRGLRER-LEKLNTPGTWNHITEQIGM 115 (125)
Q Consensus 64 ~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~-L~~~~~~~~w~~i~~Q~GM 115 (125)
++|+=.-|+.+=-+|++++|++=.+.|..|..+ |+++..|..|.--.+-.+=
T Consensus 3 ~~ltl~~L~tm~a~elE~~R~~Ged~RR~L~~aVm~~L~~P~gW~~n~Ey~~E 55 (143)
T PF06290_consen 3 TELTLEVLKTMSAQELEDYRAAGEDFRRELTHAVMRELTLPEGWRVNAEYRSE 55 (143)
T ss_dssp ----HHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHT----TTEEEEE-SSST
T ss_pred ceehHHHHhhcCHHHHHHHHHhhHHHHHHhHHHHHHhccCCccceeeceeccc
Confidence 455656688888999999999999999999885 5899999999865554443
No 137
>TIGR01057 topA_arch DNA topoisomerase I, archaeal. This model describes topoisomerase I from archaea. These enzymes are involved in the control of DNA topology. DNA topoisomerase I belongs to the type I topoisomerases, which are ATP-independent.
Probab=43.37 E-value=28 Score=31.21 Aligned_cols=33 Identities=9% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCCcchHHHHHHHH------hCCHhhHHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV------LNNPRLYDQWKQCIETMSG 84 (125)
Q Consensus 52 S~PP~~Ga~IV~~I------L~dp~L~~~W~~EL~~m~~ 84 (125)
-.|..-|..++..+ |.||++++.|++.|+.+..
T Consensus 507 l~pT~~G~~li~~l~~~~~~l~~p~~Ta~~E~~L~~I~~ 545 (618)
T TIGR01057 507 IKVTPLGEAVIETLQRYCPEIISEELTRRFESKLEDIMS 545 (618)
T ss_pred EeeehHHHHHHHHHHHhchhhcChhhHHHHHHHHHHHHc
Confidence 44777888888777 8999999999999987653
No 138
>PRK09064 5-aminolevulinate synthase; Validated
Probab=42.56 E-value=1.3e+02 Score=24.58 Aligned_cols=22 Identities=14% Similarity=0.170 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy9326 80 ETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 80 ~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
...+.++.+.|..|.+.|++.|
T Consensus 299 ~~~~~~~~~~~~~l~~~L~~~g 320 (407)
T PRK09064 299 NEERERHQERAAKLKAALDAAG 320 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4456788888888888888754
No 139
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=42.39 E-value=33 Score=29.45 Aligned_cols=32 Identities=16% Similarity=0.232 Sum_probs=25.6
Q ss_pred hHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHH
Q psy9326 57 HGARIVSLVLNNPRLYDQWKQCIETMSGRIKQ 88 (125)
Q Consensus 57 ~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~ 88 (125)
.--+.+..+|++|.+...|.+||+.|...=++
T Consensus 325 rD~~~~~~lL~~~~~~~~w~~EL~~Ml~~~~K 356 (384)
T PLN00060 325 RDLQIAKSLLSSKFLQNRYREELTLMVQTGKR 356 (384)
T ss_pred HHHHHHHHHhhChhHHHHHHHHHHHHHHhCcc
Confidence 34567778999999999999999999776433
No 140
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=42.27 E-value=1.5e+02 Score=26.30 Aligned_cols=73 Identities=16% Similarity=0.196 Sum_probs=35.0
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L 97 (125)
++|-+ |++++..+ + +...+....-..+|+|..| .|++..+. +...=..|-+.+++++.+.=+.|.+.|
T Consensus 288 L~GP~-GG~I~~~~--~----l~~~L~~a~P~i~gg~l~p--~iAA~avA---l~e~~~~ef~~y~~~l~~Na~~La~~L 355 (493)
T PRK13580 288 LRGPR-GGLVLAKK--E----YADAVDKGCPLVLGGPLPH--VMAAKAVA---LAEARTPEFQKYAQQVVDNARALAEGF 355 (493)
T ss_pred ccCCC-eEEEEecH--H----HHHHHhhCCCcccCCCccH--HHHHHHHH---HHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 45656 66655432 2 2333322223456666665 33333332 111111122445666666666777777
Q ss_pred HhcCC
Q psy9326 98 EKLNT 102 (125)
Q Consensus 98 ~~~~~ 102 (125)
++.|.
T Consensus 356 ~~~G~ 360 (493)
T PRK13580 356 LKRGA 360 (493)
T ss_pred HhcCC
Confidence 77664
No 141
>PRK13701 psiB plasmid SOS inhibition protein B; Provisional
Probab=41.66 E-value=30 Score=25.94 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=37.6
Q ss_pred HhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCCCccccc
Q psy9326 65 VLNNPRLYDQWKQCIETMSGRIKQMRRGLRER-LEKLNTPGTWNHITE 111 (125)
Q Consensus 65 IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~-L~~~~~~~~w~~i~~ 111 (125)
+++=..|+.+=-+|++++|++=.+.|..|-++ ++++..|..|.--.+
T Consensus 4 ~ltl~~l~tM~a~ElEd~R~~G~d~RR~Lt~aVm~~L~~P~gW~~naE 51 (144)
T PRK13701 4 ELTLNVLQTMSAQEYEDIRAAGSDERRELTHAVMRELDAPDGWTMNGE 51 (144)
T ss_pred EEcHHHHhccCHHHHHHHHHHhHHHHHHhHHHHHhccCCCccceeehh
Confidence 34444566777899999999999999999875 589999999986443
No 142
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=41.65 E-value=60 Score=27.93 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 80 ETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 80 ~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+..|+.+ |+.|.+.|++.| |..+..+-|+|.|.-+
T Consensus 291 ~~l~~~~~~-r~~l~~~L~~~G----~~v~~P~Ggh~v~~d~ 327 (431)
T cd00617 291 DYLRHRVEQ-VRYLGDRLDEAG----VPIVEPAGGHAVFIDA 327 (431)
T ss_pred HHHHHHHHH-HHHHHHHHHHCC----CCccCCCcceEEEEEh
Confidence 445666665 788999999876 6666667888877643
No 143
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=41.57 E-value=70 Score=25.88 Aligned_cols=14 Identities=7% Similarity=0.221 Sum_probs=9.3
Q ss_pred ccccccCCccceEE
Q psy9326 14 SYSIPTDERIGNLT 27 (125)
Q Consensus 14 ~~~~~ygeRvGal~ 27 (125)
||.+.-|-|+|++.
T Consensus 235 sK~l~~G~~ig~v~ 248 (377)
T PRK02936 235 AKGLGNGIPVGAMI 248 (377)
T ss_pred cccccCCCccEEEE
Confidence 56666667888643
No 144
>TIGR01051 topA_bact DNA topoisomerase I, bacterial. This model describes DNA topoisomerase I among the members of bacteria. DNA topoisomerase I transiently cleaves one DNA strand and thus relaxes negatively supercoiled DNA during replication, transcription and recombination events.
Probab=41.03 E-value=34 Score=30.77 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=26.8
Q ss_pred CCCcchHHHHHHHH------hCCHhhHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV------LNNPRLYDQWKQCIETMS 83 (125)
Q Consensus 52 S~PP~~Ga~IV~~I------L~dp~L~~~W~~EL~~m~ 83 (125)
-.|..-|..++..+ |.+|+|++.|+..|+.+.
T Consensus 501 l~pT~~G~~li~~l~~~~~~l~~p~lTa~~E~~L~~I~ 538 (610)
T TIGR01051 501 LYPTELGFAVTDLLEKHFGDVVDYDFTAKMEKDLDEIA 538 (610)
T ss_pred EeECHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHH
Confidence 45777888888776 789999999999998765
No 145
>PHA00442 host recBCD nuclease inhibitor
Probab=40.98 E-value=69 Score=20.45 Aligned_cols=37 Identities=11% Similarity=0.358 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q psy9326 72 YDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITE 111 (125)
Q Consensus 72 ~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~~ 111 (125)
|..| .+++.+-+.+.+ |..+.++|+..|.+ +|+-+-.
T Consensus 12 Rd~w-nd~q~yidsLek-~~~~L~~Lea~GVD-NW~Gy~e 48 (59)
T PHA00442 12 RDAW-NDMQGYIDSLEK-DNEFLKALRACGVD-NWDGYMD 48 (59)
T ss_pred HHHH-HHHHHHHHHHHH-hhHHHHHHHHcCCc-chhhHHH
Confidence 3445 457777777777 89999999998885 6987644
No 146
>PRK05582 DNA topoisomerase I; Validated
Probab=40.82 E-value=35 Score=30.87 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCCcchHHHHHHHH------hCCHhhHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV------LNNPRLYDQWKQCIETMS 83 (125)
Q Consensus 52 S~PP~~Ga~IV~~I------L~dp~L~~~W~~EL~~m~ 83 (125)
-.|..-|..++..+ |.||++++.|+.+|+.+.
T Consensus 495 l~pT~~G~~l~~~l~~~~~~l~~p~lTa~~E~~L~~I~ 532 (650)
T PRK05582 495 LVPTELGEIVNELLEEFFPDIVDVEFTAEMEEKLDEIE 532 (650)
T ss_pred EeecHHHHHHHHHHHHhchhhcCHHHHHHHHHHHHHHH
Confidence 55778888887766 789999999999998764
No 147
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=39.59 E-value=1.2e+02 Score=20.42 Aligned_cols=43 Identities=7% Similarity=0.114 Sum_probs=31.6
Q ss_pred CCCcchHHHHHHHHhC-CHhhHHHHHH------------HHHHHHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLVLN-NPRLYDQWKQ------------CIETMSGRIKQMRRGLR 94 (125)
Q Consensus 52 S~PP~~Ga~IV~~IL~-dp~L~~~W~~------------EL~~m~~RI~~~R~~L~ 94 (125)
...+..|..+...+++ +|+++..+.. +++.-..++...=..++
T Consensus 17 ~~~~~~g~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v 72 (140)
T cd01040 17 ADREEIGLEFYERLFKAHPETRALFSRFGGLSAALKGSPKFKAHGKRVLNALDEAI 72 (140)
T ss_pred ccHHhHHHHHHHHHHHHChhHHHHhHHhCCchHhHccCHHHHHHHHHHHHHHHHHH
Confidence 5678999999999998 8999999987 66555555554333333
No 148
>PRK08173 DNA topoisomerase III; Validated
Probab=38.83 E-value=36 Score=32.06 Aligned_cols=33 Identities=18% Similarity=0.494 Sum_probs=26.4
Q ss_pred CCCcchHHHHHHHH-------hCCHhhHHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV-------LNNPRLYDQWKQCIETMSG 84 (125)
Q Consensus 52 S~PP~~Ga~IV~~I-------L~dp~L~~~W~~EL~~m~~ 84 (125)
-.|..-|-.++..+ |.+|+|.+.|+..|+.+..
T Consensus 546 l~pT~~G~~li~~l~~~~~~~l~~p~lTa~wE~~L~~I~~ 585 (862)
T PRK08173 546 LIPTAKAFQLMTLLRGLGVEELTSPELTGEWEYKLSQIER 585 (862)
T ss_pred echhHHHHHHHHHHhhcCcccccChhHHHHHHHHHHHHHc
Confidence 45777787777766 6799999999999987654
No 149
>COG3691 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.77 E-value=53 Score=23.16 Aligned_cols=37 Identities=14% Similarity=0.175 Sum_probs=31.8
Q ss_pred cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCc
Q psy9326 19 TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPP 55 (125)
Q Consensus 19 ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP 55 (125)
=++.+-..+.+..+..+++.....|...+|+.+|-|-
T Consensus 27 n~Dct~~~s~~~as~a~ae~~La~lt~kAr~veSepc 63 (98)
T COG3691 27 NSDCTAEYSRFFATRAEAEEALAALTEKARAVESEPC 63 (98)
T ss_pred CCCceEEEEEEecCHHHHHHHHHHHHHHHHhhccCcc
Confidence 3566777888999999999999999999999999663
No 150
>TIGR01323 nitrile_alph nitrile hydratase, alpha subunit. This model describes both iron- and cobalt-containing nitrile hydratase alpha chains. It excludes the thiocyanate hydrolase gamma subunit of Thiobacillus thioparus, a sequence that appears to have evolved from within the family of nitrile hydratase alpha subunits but which differs by several indels and a more rapid accumulation of point mutations.
Probab=38.47 E-value=27 Score=27.22 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.6
Q ss_pred CCcchHHHHHHHHhCCHhhHHHH
Q psy9326 53 NPPSHGARIVSLVLNNPRLYDQW 75 (125)
Q Consensus 53 ~PP~~Ga~IV~~IL~dp~L~~~W 75 (125)
.-|..||++|++--.||+.++.-
T Consensus 32 ~gP~nGA~vVArAW~Dp~fk~~L 54 (185)
T TIGR01323 32 WGPENGAKVVAKAWVDPEFRALL 54 (185)
T ss_pred cCCcchhhhhhHHhcCHHHHHHH
Confidence 37999999999999999976543
No 151
>PHA02599 dsbA double-stranded DNA binding protein; Provisional
Probab=38.22 E-value=97 Score=21.56 Aligned_cols=46 Identities=28% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy9326 52 SNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPG 104 (125)
Q Consensus 52 S~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~~ 104 (125)
-||..||-+++..|-.-++.+.+ .+.+.+.|+++|..- =.++|..|
T Consensus 11 fn~~vhg~~l~~lIkEAS~~kt~----ie~y~e~iKdIk~rA---K~E~GvdG 56 (91)
T PHA02599 11 FNPAVHGERLAQLIKEASDHKTQ----IEAYGEMIKDIKDRA---KTELGVDG 56 (91)
T ss_pred cCchhhHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHH---HHHhCCCH
Confidence 58999999999999887776555 345556666666442 23455554
No 152
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=37.81 E-value=1.7e+02 Score=21.77 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=48.2
Q ss_pred CCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcCCC
Q psy9326 33 KSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQ---MRRGLRERLEKLNTP 103 (125)
Q Consensus 33 ~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~---~R~~L~~~L~~~~~~ 103 (125)
+..+...-..|+++.+..-.| |..-.+|=..|-+-.++-.+|.++.+.+...-+. -.+.|-+.|+..|++
T Consensus 2 p~~It~w~~ALryv~~~v~~n-~~~~~~Ir~Li~~Q~~~Er~w~~~Re~l~~k~~~r~e~~k~l~~~l~s~g~~ 74 (150)
T PF10454_consen 2 PSTITTWPAALRYVMKTVAQN-PEFLQRIRRLIKEQHDHERQWWEGREALIAKQKARAEKKKKLDEVLRSVGGG 74 (150)
T ss_pred chhhhcHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 344455566677776655444 4555778888888888999999999998888774 234455556666663
No 153
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.46 E-value=82 Score=20.92 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9326 73 DQWKQCIETMSGRIKQMRRGLRERLEK 99 (125)
Q Consensus 73 ~~W~~EL~~m~~RI~~~R~~L~~~L~~ 99 (125)
++|.+|++....+|..-| ++...+++
T Consensus 55 eeq~~~i~~Le~~i~~k~-~~L~~~~~ 80 (83)
T PF07544_consen 55 EEQEEEIEELEEQIRKKR-EVLQKFKE 80 (83)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 689999999999999855 44445543
No 154
>PRK06599 DNA topoisomerase I; Validated
Probab=36.45 E-value=44 Score=30.36 Aligned_cols=32 Identities=6% Similarity=0.130 Sum_probs=26.0
Q ss_pred CCCcchHHHHHHHH------hCCHhhHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV------LNNPRLYDQWKQCIETMS 83 (125)
Q Consensus 52 S~PP~~Ga~IV~~I------L~dp~L~~~W~~EL~~m~ 83 (125)
-.|..-|..++..+ +.||+|++.|+..|+.+.
T Consensus 509 l~~T~~G~~l~~~l~~~~~~l~~p~lTa~~E~~L~~I~ 546 (675)
T PRK06599 509 FIPTDLGRIVNDFLVEHFPKYVDYDFTAGLEDELDEIA 546 (675)
T ss_pred EeecHHHHHHHHHHHHhchhhCCHHHHHHHHHHHHHHH
Confidence 45778888887755 679999999999998764
No 155
>PF15500 Toxin_39: Putative RNase-like toxin
Probab=36.26 E-value=36 Score=23.75 Aligned_cols=33 Identities=18% Similarity=0.377 Sum_probs=21.1
Q ss_pred HhCCHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Q psy9326 65 VLNNPRLYDQWKQCIETMSGRIKQM----RRGLRERLE 98 (125)
Q Consensus 65 IL~dp~L~~~W~~EL~~m~~RI~~~----R~~L~~~L~ 98 (125)
+=.||+| ++|.++|+.||+-=-+. -..|..+|+
T Consensus 44 l~a~p~l-k~wne~vq~~Rk~dp~~aAdeaakLi~alE 80 (96)
T PF15500_consen 44 LAADPAL-KAWNETVQAKRKLDPKFAADEAAKLIQALE 80 (96)
T ss_pred hccCHHH-HHHHHHHHHHHhhchhhhHHHHHHHHHHHH
Confidence 4456666 67999999998754432 234555554
No 156
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=36.26 E-value=83 Score=25.71 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=36.7
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHH-HHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITL-IVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~-i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+.-|-|+|++.+ + ++..+. +.. ....+|+.+|.. +..+...|+- +.+ ++..+++.++++.
T Consensus 251 sK~l~~G~~ig~~~~--~-~~~~~~----~~~~~~~~t~~~~~~~-~aaa~a~l~~------~~~--~~~~~~~~~~~~~ 314 (398)
T PRK03244 251 AKGLGGGLPIGACLA--F-GPAADL----LTPGLHGSTFGGNPVA-CAAALAVLDT------IAS--EGLLENAERLGEQ 314 (398)
T ss_pred chhhhCCcccEEEEE--c-HHHHhh----ccCCCCcCCCCCCHHH-HHHHHHHHHH------HHh--ccHHHHHHHHHHH
Confidence 455555678888765 2 122222 222 234567666644 4444444431 111 1234556666777
Q ss_pred HHHHHHhcC
Q psy9326 93 LRERLEKLN 101 (125)
Q Consensus 93 L~~~L~~~~ 101 (125)
|.+.|++.+
T Consensus 315 l~~~L~~~~ 323 (398)
T PRK03244 315 LRAGIEALG 323 (398)
T ss_pred HHHHHHhcC
Confidence 777887654
No 157
>KOG3208|consensus
Probab=36.00 E-value=1.5e+02 Score=23.88 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCcHHHHHHHHHHHHHhhcC--CCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 33 KSHIPAVKSQITLIVRAMYS--NPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGL 93 (125)
Q Consensus 33 ~~~a~~v~sql~~i~R~~yS--~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L 93 (125)
+.+++-+..|+..++-.+=. ..|+.++.+.+++-.-.+..+...+|....+.-+...|+.+
T Consensus 57 ~~eie~LLeql~~vndsm~~~~~s~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~ 119 (231)
T KOG3208|consen 57 ENEIEGLLEQLQDVNDSMNDCASSPANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERE 119 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666544433 56677788999999989988999999999998888776643
No 158
>PRK07219 DNA topoisomerase I; Validated
Probab=35.83 E-value=43 Score=31.25 Aligned_cols=33 Identities=9% Similarity=0.290 Sum_probs=27.8
Q ss_pred CCCcchHHHHHHHH------hCCHhhHHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV------LNNPRLYDQWKQCIETMSG 84 (125)
Q Consensus 52 S~PP~~Ga~IV~~I------L~dp~L~~~W~~EL~~m~~ 84 (125)
-.|..-|..|+..+ |.||+++++|+++|+.+.+
T Consensus 516 l~pT~~G~~l~~~l~~~~~~l~~~~~Ta~~E~~L~~I~~ 554 (822)
T PRK07219 516 PRPTDLGIAVIEALEKYAPEIVSEEMTAQLEADMQAIED 554 (822)
T ss_pred eeecHHHHHHHHHHHHhchhhcChhHHHHHHHHHHHHHc
Confidence 56788888888887 7899999999999987653
No 159
>KOG4010|consensus
Probab=35.70 E-value=1.3e+02 Score=23.74 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=30.4
Q ss_pred chHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 56 SHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 56 ~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L 97 (125)
...+..-..+.-..+=+++|..||..+.+-|..+|+-|..+-
T Consensus 30 ~~a~s~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKe 71 (208)
T KOG4010|consen 30 DVAASASEFEALSEEEKEELRTELAKVEEEIVTLRQVLAAKE 71 (208)
T ss_pred chhhhhhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444456678999999999999999999887653
No 160
>PF06194 Phage_Orf51: Phage Conserved Open Reading Frame 51; InterPro: IPR009338 This entry is represented by the Staphylococcus phage PVL (bacteriophage phi-PVL), Orf51. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.28 E-value=26 Score=23.76 Aligned_cols=21 Identities=29% Similarity=0.820 Sum_probs=16.7
Q ss_pred CcccccccCCCcccccccCCccceEEEEc
Q psy9326 2 FSTKKFLYPNLESYSIPTDERIGNLTLVL 30 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ygeRvGal~vV~ 30 (125)
|++|.+||-. ++||..++||.
T Consensus 14 FgsKrYLYQd--------~~kVAH~HvVN 34 (80)
T PF06194_consen 14 FGSKRYLYQD--------NEKVAHIHVVN 34 (80)
T ss_pred hCcceeeeec--------CceEEEEEEEc
Confidence 6778888754 68999999985
No 161
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=34.62 E-value=63 Score=20.89 Aligned_cols=28 Identities=11% Similarity=0.405 Sum_probs=22.2
Q ss_pred HHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 62 VSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRER 96 (125)
Q Consensus 62 V~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~ 96 (125)
+..|-.|| .||..+..|+.++|..+.+-
T Consensus 30 l~kitK~p-------~El~~i~~kl~~~R~~FLn~ 57 (62)
T PF06034_consen 30 LKKITKNP-------KELQEIEKKLQELRQNFLNF 57 (62)
T ss_pred HHhccCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 44566665 48999999999999988764
No 162
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=34.58 E-value=38 Score=28.14 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=35.0
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHH--HhCCHhhHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSL--VLNNPRLYDQWKQCIETMSGRIKQMRR 91 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~--IL~dp~L~~~W~~EL~~m~~RI~~~R~ 91 (125)
||.+.-|-|+|++.. +++.++.+...-....-.+|+.+|..-+...+. ++.+++ |.+.+.++. ..+|+
T Consensus 262 sK~l~~G~pig~v~~---~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~----~~~~~~~~~---~~~~~ 331 (423)
T TIGR00713 262 GKIIGGGLPVGAFGG---RREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEG----VYTELDELA---KRLAE 331 (423)
T ss_pred hhhhcCCCceeeeeE---HHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhccc----HHHHHHHHH---HHHHH
Confidence 556666678887654 222222222100001124555555443322222 233332 444444444 44566
Q ss_pred HHHHHHHhcCC
Q psy9326 92 GLRERLEKLNT 102 (125)
Q Consensus 92 ~L~~~L~~~~~ 102 (125)
.|.+.+.+.+.
T Consensus 332 ~l~~~~~~~~~ 342 (423)
T TIGR00713 332 GLSEVLEDTGI 342 (423)
T ss_pred HHHHHHHhcCC
Confidence 66666665543
No 163
>PRK13430 F0F1 ATP synthase subunit delta; Provisional
Probab=34.29 E-value=1.8e+02 Score=23.36 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHH-------HhCCHhhHHHHHHHHHHHHHHHHH
Q psy9326 37 PAVKSQITLIVRAMYSNPPSHGARIVSL-------VLNNPRLYDQWKQCIETMSGRIKQ 88 (125)
Q Consensus 37 ~~v~sql~~i~R~~yS~PP~~Ga~IV~~-------IL~dp~L~~~W~~EL~~m~~RI~~ 88 (125)
+.....+...++..||.|+...-.+... +-.+..-..+|.+||..+..-+.+
T Consensus 75 ~~~~~~~~~~v~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~ 133 (271)
T PRK13430 75 PATLEVVSDAVRQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILAS 133 (271)
T ss_pred HHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 3445668889999999999887665442 333444567899999998777754
No 164
>PRK07179 hypothetical protein; Provisional
Probab=34.15 E-value=1.7e+02 Score=24.08 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 77 QCIETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 77 ~EL~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
++.+..++++.++|+.|.+.|++.+
T Consensus 299 ~~~~~~~~~l~~~~~~l~~~L~~~g 323 (407)
T PRK07179 299 ESADDRRARLHANARFLREGLSELG 323 (407)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3345667888888899999998764
No 165
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=33.48 E-value=2.2e+02 Score=22.96 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 77 QCIETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 77 ~EL~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
++.+.++.++.+.|+.+.+.|++.+
T Consensus 289 ~~~~~~~~~~~~~~~~l~~~L~~~g 313 (393)
T TIGR01822 289 EASNELRDRLWANTRYFRERMEAAG 313 (393)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3466788899999999999987653
No 166
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=33.46 E-value=50 Score=24.02 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q psy9326 70 RLYDQWKQCIETMSGRIKQM 89 (125)
Q Consensus 70 ~L~~~W~~EL~~m~~RI~~~ 89 (125)
.=|.+|.-|..+|..||..+
T Consensus 18 rdR~~WeiERaEmkarIa~L 37 (134)
T PF08232_consen 18 RDRNQWEIERAEMKARIAFL 37 (134)
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 34788999999999998764
No 167
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=32.91 E-value=1.2e+02 Score=24.68 Aligned_cols=37 Identities=14% Similarity=0.322 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCCCccccccccceeecCC
Q psy9326 84 GRIKQMRRGLRERLEKL-NTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 84 ~RI~~~R~~L~~~L~~~-~~~~~w~~i~~Q~GMFs~~gL 121 (125)
.++.++++.+.+.|++. +.. .+..-.+..|+|...-+
T Consensus 302 ~~~~~~~~~l~~~l~~l~~~~-~~~~~~~~~g~~~~v~~ 339 (400)
T PTZ00125 302 ENAQRLGEVFRDGLKELLKKS-PWVKEIRGKGLLNAIVF 339 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCeEEEecccEEEEEEE
Confidence 34444455555555543 111 12211245677655444
No 168
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=32.90 E-value=2.4e+02 Score=22.03 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 78 CIETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 78 EL~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
+++.++.++.+.|+.|.+.|++.+
T Consensus 266 ~~~~~~~~~~~~~~~l~~~L~~~~ 289 (360)
T TIGR00858 266 EEPWRREKLLALIARLRAGLEALG 289 (360)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHcC
Confidence 345678899999999999998753
No 169
>PRK14973 DNA topoisomerase I; Provisional
Probab=32.48 E-value=53 Score=31.38 Aligned_cols=34 Identities=12% Similarity=0.346 Sum_probs=27.2
Q ss_pred CCCcchHHHHHHHH------hCCHhhHHHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV------LNNPRLYDQWKQCIETMSGR 85 (125)
Q Consensus 52 S~PP~~Ga~IV~~I------L~dp~L~~~W~~EL~~m~~R 85 (125)
-.|..-|..++..+ +.||++++.|+++|+.+..-
T Consensus 506 l~pT~~G~~li~~L~~~~~~l~~p~lTA~~E~~Ld~I~~G 545 (936)
T PRK14973 506 LRPTLVGRAVTESLEEHAGTITEPDMTQTLEEHMQQIKER 545 (936)
T ss_pred eeEcHHHHHHHHHHHHhchhhcCHHHHHHHHHHHHHHHcC
Confidence 45777787777766 67999999999999887643
No 170
>TIGR00743 conserved hypothetical protein. These small proteins are approximately 100 amino acids in length and appear to be found only in gamma proteobacteria. The function of this protein family is unknown.
Probab=32.14 E-value=74 Score=22.25 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=34.4
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcc
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPS 56 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~ 56 (125)
==++++-.+..+..+.+.++.....+...+|...|.|..
T Consensus 23 dn~D~~a~~~~~~~~~~~Ae~~l~~l~ekAk~vesepc~ 61 (95)
T TIGR00743 23 DNSDCTSKFSRFFATRAEAESFLAKLTEKARAVESEPCE 61 (95)
T ss_pred cCCCcEEEEEEEeCCHHHHHHHHHHHHHHHHHhhcCCce
Confidence 346788888999999999999999999999999999863
No 171
>PF03592 Terminase_2: Terminase small subunit ; InterPro: IPR005335 Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].; GO: 0006323 DNA packaging; PDB: 3ZQP_B 2CMP_A 3ZQO_C 3ZQN_B 3ZQQ_B 3ZQM_D.
Probab=31.78 E-value=1e+02 Score=21.97 Aligned_cols=53 Identities=17% Similarity=0.195 Sum_probs=34.1
Q ss_pred HHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 44 TLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLE 98 (125)
Q Consensus 44 ~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~ 98 (125)
+.-+++-| .|.......+.+|.||..++.-.+-.+++..|..--+..+.+.|.
T Consensus 20 ~Aa~~AGy--s~ktA~~~asrLL~n~~V~~~I~~~~~e~~~~~~~t~~~vl~~l~ 72 (144)
T PF03592_consen 20 QAAIKAGY--SEKTARANASRLLRNPKVKAYIEELMKEREERAIITADEVLEELT 72 (144)
T ss_dssp HHHHTTTS---CTTHHHHHHHHTTSHHHHHHHHHHHHHHSSS-S--HHHHHHHHH
T ss_pred HHHHhhcC--CcCcHHHHHHHHHcCCchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34567766 566667788999999999887666666666554444555555554
No 172
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=31.62 E-value=2.3e+02 Score=25.03 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=45.2
Q ss_pred cceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHH
Q psy9326 23 IGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMR 90 (125)
Q Consensus 23 vGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R 90 (125)
.|.++++.. .+|....|..-+|.|.++-.++-.-+. |++ +.+.++++.+...|.++-
T Consensus 88 ~G~fSfin~---------~~lv~~~k~i~~nA~~~af~lal~~~~-p~~-~~~~~~l~~~~~~~N~~~ 144 (451)
T PRK13723 88 LGSFSFING---------EQLQRFVKQIMSNAAGYFFDLALQTTV-PEI-KTAKDFLQKMASDINSMN 144 (451)
T ss_pred ccchhhcCH---------HHHHHHHHHHHHhCHHHHHHHHHHHhC-HHH-HHHHHHHHHHHHHHHhhc
Confidence 355565553 346777788889999999888877776 888 788999999999998876
No 173
>PRK07726 DNA topoisomerase III; Provisional
Probab=31.41 E-value=54 Score=29.75 Aligned_cols=33 Identities=18% Similarity=0.590 Sum_probs=25.9
Q ss_pred CCCcchHHHHHHHH---hCCHhhHHHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV---LNNPRLYDQWKQCIETMSG 84 (125)
Q Consensus 52 S~PP~~Ga~IV~~I---L~dp~L~~~W~~EL~~m~~ 84 (125)
-.|..-|-.++..+ |.||++++.|+.+|+.+..
T Consensus 538 l~pT~~G~~li~~l~~~l~~p~~Ta~~E~~L~~I~~ 573 (658)
T PRK07726 538 IHATDKGKQLIDALPEELTSPDMTAKWEQALDQISE 573 (658)
T ss_pred EEECHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHc
Confidence 44667777777665 7899999999999987654
No 174
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=31.15 E-value=1.2e+02 Score=25.49 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=10.9
Q ss_pred ccccccCCccceEEE
Q psy9326 14 SYSIPTDERIGNLTL 28 (125)
Q Consensus 14 ~~~~~ygeRvGal~v 28 (125)
||.+.-|-|+|++.+
T Consensus 265 sK~l~~G~pig~v~~ 279 (420)
T TIGR00700 265 AKSLADGLPLSGVTG 279 (420)
T ss_pred eccccCCcceEEEEe
Confidence 566677788888664
No 175
>PRK10534 L-threonine aldolase; Provisional
Probab=31.06 E-value=2.6e+02 Score=21.95 Aligned_cols=31 Identities=10% Similarity=0.029 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCccccccccceeecCC
Q psy9326 86 IKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGL 121 (125)
Q Consensus 86 I~~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gL 121 (125)
+.+.|+.|.+.|++.| +..... .|.|.+.-+
T Consensus 252 ~~~~r~~l~~~L~~~g----~~~~~~-~~nfv~~~~ 282 (333)
T PRK10534 252 DHDNAAWLAEQLREAG----ADVMRQ-DTNMLFVRV 282 (333)
T ss_pred HHHHHHHHHHHHHhCC----CccCCC-CceEEEEEC
Confidence 3345888999998865 333333 377776654
No 176
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=31.00 E-value=1.3e+02 Score=24.86 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q psy9326 81 TMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 81 ~m~~RI~~~R~~L~~~L~~~~ 101 (125)
++.++++++++.|.+.|++.+
T Consensus 299 ~l~~~~~~~~~~l~~~L~~l~ 319 (397)
T TIGR03246 299 ELLAGVKQRHDLFVDGLEKIN 319 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666676654
No 177
>PRK05776 DNA topoisomerase I; Provisional
Probab=30.72 E-value=60 Score=29.68 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=25.3
Q ss_pred CCCcchHHHHHHHH------hCCHhhHHHHHHHHHHH
Q psy9326 52 SNPPSHGARIVSLV------LNNPRLYDQWKQCIETM 82 (125)
Q Consensus 52 S~PP~~Ga~IV~~I------L~dp~L~~~W~~EL~~m 82 (125)
-.|..-|..++..+ +.||++++.|+++|+.+
T Consensus 514 l~pT~~G~~v~~~L~~~~~~l~~~~~Ta~~E~~Ld~I 550 (670)
T PRK05776 514 IEVTPLGFGVAEVLEKYFPDIVSVELTRDFEEKLEMI 550 (670)
T ss_pred EeECHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHH
Confidence 45777777777766 78999999999999876
No 178
>PRK07220 DNA topoisomerase I; Validated
Probab=30.51 E-value=63 Score=29.84 Aligned_cols=33 Identities=9% Similarity=0.320 Sum_probs=27.2
Q ss_pred cCCCcchHHHHHHHH------hCCHhhHHHHHHHHHHHH
Q psy9326 51 YSNPPSHGARIVSLV------LNNPRLYDQWKQCIETMS 83 (125)
Q Consensus 51 yS~PP~~Ga~IV~~I------L~dp~L~~~W~~EL~~m~ 83 (125)
.-.|..-|..++..+ +.||+++++|+++|+.+.
T Consensus 506 ~l~pT~~G~~v~~~l~~~~~~i~~~~~Ta~~E~~Ld~I~ 544 (740)
T PRK07220 506 PIQPTNTAFAVVDALEKYAPTITKPDMTSRLEEDMDKIA 544 (740)
T ss_pred cccccHHHHHHHHHHHHhchhhcChhHHHHHHHHHHHHH
Confidence 355778888888777 679999999999998765
No 179
>PRK05783 hypothetical protein; Provisional
Probab=30.41 E-value=88 Score=21.22 Aligned_cols=40 Identities=20% Similarity=0.169 Sum_probs=33.5
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhh-cCCCcch
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAM-YSNPPSH 57 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~-yS~PP~~ 57 (125)
.-+=|+|-.+-+.=+++..+.+..+...+|+.. -+||-.|
T Consensus 35 V~~VRvGK~iel~l~~~~~e~a~~~v~~mc~~LrLaNpVIe 75 (84)
T PRK05783 35 IIEVRAGKYLVFKIEANSPEEAKELALKIAREGRLYNPIVH 75 (84)
T ss_pred cceEEeeEEEEEEEcCCCHHHHHHHHHHHHHhcCcCCceeE
Confidence 345699999988877777788899999999998 9999765
No 180
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=30.15 E-value=98 Score=25.09 Aligned_cols=51 Identities=14% Similarity=0.354 Sum_probs=39.4
Q ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccceeecC
Q psy9326 67 NNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTG 120 (125)
Q Consensus 67 ~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~g 120 (125)
.||+.++..++.++.+...|.++-+....+|..... .- .+..+.|=|+|++
T Consensus 156 ~dP~~~~~y~~N~~~y~~kL~~l~~~~~~~~~~~~~--~r-~~vt~h~af~Y~~ 206 (303)
T COG0803 156 LDPENKETYEKNAEAYLKKLNKLDEEAKAKLSKIPA--QR-DVVTSHGAFGYLA 206 (303)
T ss_pred hCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--Cc-EEEeecchHHHHH
Confidence 499999999999999999999999999888875553 23 3344555666664
No 181
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=29.86 E-value=1.1e+02 Score=26.48 Aligned_cols=29 Identities=21% Similarity=0.050 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCCCCCccccccccceeecCCC
Q psy9326 90 RRGLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122 (125)
Q Consensus 90 R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~~gLs 122 (125)
|+.|.+.|.+.| |+.+..+.|+|.|..++
T Consensus 325 ~~~l~~~L~~~G----~~~~~p~Gg~~v~~d~~ 353 (460)
T PRK13238 325 VEYLGEGLEEAG----VPIQTPAGGHAVFVDAG 353 (460)
T ss_pred HHHHHHHHHHCC----CCeEccCCceEEEEEch
Confidence 788889998754 67777889999887554
No 182
>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....
Probab=29.27 E-value=2.2e+02 Score=20.41 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=24.4
Q ss_pred CCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 53 NPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRER 96 (125)
Q Consensus 53 ~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~ 96 (125)
+||.-|-.-+..++.. -+++.-||..+|..+++.
T Consensus 48 ~~~~DGd~fl~~L~~e----------~~~LA~RIM~vR~~la~~ 81 (111)
T PF02341_consen 48 NPLQDGDAFLEALMRE----------NQELALRIMEVREHLAEE 81 (111)
T ss_dssp STCSSHHHHHHHHHCC-----------HHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHH----------CHHHHHHHHHHHHHHHHH
Confidence 6666666666555553 246689999999999976
No 183
>PRK13824 replication initiation protein RepC; Provisional
Probab=28.36 E-value=82 Score=27.10 Aligned_cols=36 Identities=17% Similarity=0.527 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhcCCCCCCccccc
Q psy9326 76 KQCIETMSGRIKQMRRGLRERL---EKLNTPGTWNHITE 111 (125)
Q Consensus 76 ~~EL~~m~~RI~~~R~~L~~~L---~~~~~~~~w~~i~~ 111 (125)
.++++.++.++.-+|..+...+ .+.+.+++|+.+..
T Consensus 162 ~~~~r~lr~~it~~rRdi~~li~~a~~~~~~~~w~~~~~ 200 (404)
T PRK13824 162 RKALRRLRERLTLCRRDIAKLIEAAIEEGVPGDWEGVEQ 200 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence 5678888888888888555444 56788899998654
No 184
>cd08797 Death_NFkB1_p105 Death domain of the Nuclear Factor-KappaB1 precursor protein p105. Death Domain (DD) of the Nuclear Factor-KappaB1 (NF-kB1) precursor protein p105. The NF-kB family of transcription factors play a central role in cardiovascular growth, stress response, and inflammation by controlling the expression of a network of different genes. There are five NF-kB proteins, all containing an N-terminal REL Homology Domain (RHD). NF-kB1 (or p50) is produced from the processing of the precursor protein p105, which contains ANK repeats and a C-terminal DD in addition to the RHD. It is regulated by the classical (or canonical) NF-kB pathway. In the cytosol, p50 forms an inactive complex with RelA (or p65) and the Inhibitor of NF-kB (IkB). Activation is triggered by the phosphorylation and degradation of IkB, resulting in the active DNA-binding p50-RelA dimer to migrate to the nucleus. The classical pathway regulates the majority of genes activated by NF-kB including those encod
Probab=28.34 E-value=19 Score=24.24 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCCCCCccccccccceee
Q psy9326 89 MRRGLRERLEKLNTPGTWNHITEQIGMFSY 118 (125)
Q Consensus 89 ~R~~L~~~L~~~~~~~~w~~i~~Q~GMFs~ 118 (125)
+|++|+..|..-...|+|..+.+--||=.+
T Consensus 1 ~rqkLc~~Ld~p~~~g~Wr~LA~kL~l~~l 30 (76)
T cd08797 1 VKQQLYKLLESPDPDKNWETLAQKLGLGIL 30 (76)
T ss_pred ChhHHHHHhCCCCCCCCHHHHHHHHCchhH
Confidence 488999999877777889999887666443
No 185
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=28.26 E-value=1.7e+02 Score=24.03 Aligned_cols=45 Identities=22% Similarity=0.505 Sum_probs=35.9
Q ss_pred hcCCCcchHHHHHHHHhCCHhhHHHHH-HH--HHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 50 MYSNPPSHGARIVSLVLNNPRLYDQWK-QC--IETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 50 ~yS~PP~~Ga~IV~~IL~dp~L~~~W~-~E--L~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
++.+||.++..-+...|. |. +| ++.+.+|-+.+.+.|++.|++.+
T Consensus 235 ~~~Tp~~~~i~aL~~aL~-------~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~ 282 (360)
T PRK05355 235 MYNTPPTFAIYLAGLVFK-------WLKEQGGVAAMEKRNQEKAALLYDAIDSSD 282 (360)
T ss_pred ccCCCcHHHHHHHHHHHH-------HHHHccCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 468899988877776665 32 33 78999999999999999999876
No 186
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=28.21 E-value=89 Score=16.41 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy9326 77 QCIETMSGRIKQMRRGLRER 96 (125)
Q Consensus 77 ~EL~~m~~RI~~~R~~L~~~ 96 (125)
.|++..+.||.++-.+|-+.
T Consensus 1 ~E~~rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 1 REMNRLRNRISDLERQLSEC 20 (23)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 37888999999988887765
No 187
>PRK07049 methionine gamma-lyase; Validated
Probab=28.00 E-value=3.1e+02 Score=23.27 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=36.7
Q ss_pred cCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcC-CCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 19 TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYS-NPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 19 ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS-~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L 97 (125)
-|-|+|.++ + +++ +...+.. .|..++ ..+.+-+.++..-|. .+....++..+.|..|++.|
T Consensus 247 ~glr~G~vv--~-~~~----l~~~l~~-~~~~~g~~ls~~~a~l~~r~L~----------tl~~R~~~~~~~a~~la~~L 308 (427)
T PRK07049 247 SDLVAGAVL--G-RKA----LIRQVRA-LRSAIGTQLDPHSCWMLGRSLE----------TLVLRMERANRNARAVAEFL 308 (427)
T ss_pred CCcEEEEEE--C-CHH----HHHHHHH-HHHhcCCCCCHHHHHHHHcCCC----------hHHHHHHHHHHHHHHHHHHH
Confidence 456888754 2 332 3344444 344443 344455555554443 45555566677788999999
Q ss_pred Hhc
Q psy9326 98 EKL 100 (125)
Q Consensus 98 ~~~ 100 (125)
++.
T Consensus 309 ~~~ 311 (427)
T PRK07049 309 RDH 311 (427)
T ss_pred HhC
Confidence 865
No 188
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=27.59 E-value=3.1e+02 Score=21.71 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q psy9326 80 ETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 80 ~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
+.++.++.+.|+.|.+.|++.+
T Consensus 290 ~~~~~~~~~~~~~l~~~L~~~~ 311 (385)
T PRK05958 290 PERRERLAALIARLRAGLRALG 311 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4567788888888999998764
No 189
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.
Probab=27.53 E-value=1.3e+02 Score=20.31 Aligned_cols=28 Identities=25% Similarity=0.581 Sum_probs=22.7
Q ss_pred cCCCcchHHHHHHHHhCCHhhHHHHHHHH
Q psy9326 51 YSNPPSHGARIVSLVLNNPRLYDQWKQCI 79 (125)
Q Consensus 51 yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL 79 (125)
-.-|+.+|=+|++.+|+-|+ +..|.+-.
T Consensus 48 ~~f~~qFgReVla~lL~lp~-r~~Wr~c~ 75 (98)
T PF04676_consen 48 ERFPLQFGREVLAGLLNLPE-RADWRKCQ 75 (98)
T ss_pred CccCcchHHHHHHHHhCCCc-hHHHHhcc
Confidence 35689999999999999886 57898743
No 190
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=27.51 E-value=1.3e+02 Score=25.22 Aligned_cols=70 Identities=14% Similarity=0.103 Sum_probs=34.5
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHHH-hhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVR-AMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~R-~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
||.+.-|-|+|++.. +++..+.+. ...+ .+|+.+|. .+.++...|+.-. +.+=++.++..-..+|..
T Consensus 267 sK~l~~G~rig~v~~---~~~~~~~~~----~~~~~~t~~~~~~-~~~a~~~~l~~~~----~~~~~~~~~~~~~~~~~~ 334 (425)
T PRK08088 267 AKSIAGGFPLAGVTG---RAEVMDAIA----PGGLGGTYAGNPI-ACAAALAVLKVFE----QENLLQKANALGEKLKDG 334 (425)
T ss_pred eccccCCCcceeeEe---cHHHHhhcC----CCCCCCCCCcCHH-HHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHH
Confidence 566667788888876 222333322 1222 35565554 4666666665321 223344444444444444
Q ss_pred HHH
Q psy9326 93 LRE 95 (125)
Q Consensus 93 L~~ 95 (125)
|.+
T Consensus 335 l~~ 337 (425)
T PRK08088 335 LLA 337 (425)
T ss_pred HHH
Confidence 443
No 191
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=27.45 E-value=1.4e+02 Score=21.19 Aligned_cols=52 Identities=19% Similarity=0.217 Sum_probs=33.9
Q ss_pred cchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcCCCCCCccc
Q psy9326 55 PSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQM----------RRGLRERLEKLNTPGTWNHI 109 (125)
Q Consensus 55 P~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~----------R~~L~~~L~~~~~~~~w~~i 109 (125)
|..-+..+..+|.+-+ .+...-+-.+..|-+.| |+.||.+|...|.|- ++-|
T Consensus 20 ee~ia~yL~~~le~~d--~a~i~~alg~var~~GMsqvA~~aGlsRe~LYkaLS~~GNPt-f~Ti 81 (100)
T COG3636 20 EEAIAAYLNAALEEGD--PALIAAALGVVARSRGMSQVARKAGLSREGLYKALSPGGNPT-FDTI 81 (100)
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCHHHHHHHhCccHHHHHHHhCCCCCCc-HHHH
Confidence 4445556666666555 55555566666665554 889999999888874 4443
No 192
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.32 E-value=1.7e+02 Score=25.50 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=55.5
Q ss_pred cCCccceEEEEcCCC------------CcHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHH
Q psy9326 19 TDERIGNLTLVLKDK------------SHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRI 86 (125)
Q Consensus 19 ygeRvGal~vV~~~~------------~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI 86 (125)
.....|.|.....+. +..+.+...++.+++..........+..+..+.. .||..=.++|+++...+
T Consensus 258 ~~~~~~~L~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~f~~lv~--~lR~~~~e~l~~l~~~~ 335 (574)
T smart00638 258 EPRNRGSLVYEFESTNQQLPIRLLKAPSNEVQIVEVLKHLVQDIASDVQEPAAAKFLRLVR--LLRTLSEEQLEQLWRQL 335 (574)
T ss_pred ccccccceEEEecCccccCChhhhcCCCchhhHHHHHHHHHHHHHHHhccchHHHHHHHHH--HHHhCCHHHHHHHHHHH
Confidence 345667676655432 4566677777777777666554444444333321 23333344444444443
Q ss_pred ----HHHHHHHHHHHHhcCCCCCCccccc
Q psy9326 87 ----KQMRRGLRERLEKLNTPGTWNHITE 111 (125)
Q Consensus 87 ----~~~R~~L~~~L~~~~~~~~w~~i~~ 111 (125)
..+|..+.|+|-..||+....+|.+
T Consensus 336 ~~~~~~~r~~~~Dal~~~GT~~a~~~i~~ 364 (574)
T smart00638 336 YEKKKKARRIFLDAVAQAGTPPALKFIKQ 364 (574)
T ss_pred HhCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5789999999999999987777754
No 193
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=27.32 E-value=1.5e+02 Score=25.96 Aligned_cols=69 Identities=17% Similarity=0.230 Sum_probs=52.0
Q ss_pred EEEEcCCCC---cHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhC---CHh-hHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 26 LTLVLKDKS---HIPAVKSQITLIVRAMYSNPPSHGARIVSLVLN---NPR-LYDQWKQCIETMSGRIKQMRRGLR 94 (125)
Q Consensus 26 l~vV~~~~~---~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~---dp~-L~~~W~~EL~~m~~RI~~~R~~L~ 94 (125)
+.|-+-|++ ....+...+-..++.-++..|.+...|+..-+. ||+ ..+.|..+..++++||..-|+.|-
T Consensus 189 vligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~ 264 (423)
T COG1239 189 LLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLS 264 (423)
T ss_pred EEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 444445555 244445555566899999999999999998875 666 789999999999999998776543
No 194
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=27.12 E-value=3.5e+02 Score=22.14 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=14.6
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHHHHHh
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITLIVRA 49 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~ 49 (125)
+.|-|.|.+. ++ +.+...|....|+
T Consensus 206 laG~r~G~v~--~~-----~~li~~l~~~~~~ 230 (346)
T TIGR03576 206 MDGPRGGLLA--GR-----KELVDKIKSVGEQ 230 (346)
T ss_pred ccccceEEEE--eC-----HHHHHHHHHhhcC
Confidence 4588877443 32 2344557777776
No 195
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=27.03 E-value=1.7e+02 Score=23.89 Aligned_cols=69 Identities=19% Similarity=0.135 Sum_probs=32.7
Q ss_pred ccccccCCccceEEEEcCCCCcHHHHHHHHHHHH-HhhcCCCcchHHHHHH--HHhCCHhhHHHHHHHHHHHHHHHHHHH
Q psy9326 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIV-RAMYSNPPSHGARIVS--LVLNNPRLYDQWKQCIETMSGRIKQMR 90 (125)
Q Consensus 14 ~~~~~ygeRvGal~vV~~~~~~a~~v~sql~~i~-R~~yS~PP~~Ga~IV~--~IL~dp~L~~~W~~EL~~m~~RI~~~R 90 (125)
||.+..|-|+|++.. ++ +.++ .+.... -.+|+.+|..-+..++ .++.++ .+.+.+..+.+++.+.+
T Consensus 243 sK~l~~G~~ig~~~~--~~-~~~~----~~~~~~~~~t~~~~~~~~aaa~a~l~~l~~~----~~~~~~~~~~~~l~~~l 311 (389)
T PRK01278 243 AKGIGGGFPLGACLA--TE-EAAK----GMTPGTHGSTYGGNPLAMAVGNAVLDVILAP----GFLDNVQRMGLYLKQKL 311 (389)
T ss_pred ehhccCCcceEEEEE--cH-HHHh----ccCCCCCCCCCCccHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHH
Confidence 455666778888543 32 2222 222221 2455555544333322 223222 34556666666666655
Q ss_pred HHH
Q psy9326 91 RGL 93 (125)
Q Consensus 91 ~~L 93 (125)
+.+
T Consensus 312 ~~l 314 (389)
T PRK01278 312 EGL 314 (389)
T ss_pred HHH
Confidence 444
No 196
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=27.00 E-value=1.3e+02 Score=25.50 Aligned_cols=15 Identities=20% Similarity=0.069 Sum_probs=11.7
Q ss_pred ccccccCCccceEEE
Q psy9326 14 SYSIPTDERIGNLTL 28 (125)
Q Consensus 14 ~~~~~ygeRvGal~v 28 (125)
||.+.-|-|+|++.+
T Consensus 287 sK~l~~G~pig~v~~ 301 (451)
T PRK06918 287 SKSLGAGVPISGVIG 301 (451)
T ss_pred ehhhcCCCccEEEEE
Confidence 567777889999765
No 197
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=26.81 E-value=95 Score=20.64 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=30.1
Q ss_pred CccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcch
Q psy9326 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSH 57 (125)
Q Consensus 21 eRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~ 57 (125)
=|+|-..-+.=+.+..+....+++.+|+..-.||-.+
T Consensus 36 Vr~GK~~~l~~~~~~~e~a~~~v~~i~~~LLaNpvie 72 (80)
T PF02700_consen 36 VRVGKYIELELEADDEEEAEEQVEEICEKLLANPVIE 72 (80)
T ss_dssp EEEEEEEEEEEE-SSHHHHHHHHHHHHHHTTS-TTTE
T ss_pred EEEEEEEEEEEeCCCHHHHHHHHHHHHHHhcCCCceE
Confidence 4888888888888888889999999999999999654
No 198
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=26.55 E-value=86 Score=26.65 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy9326 73 DQWKQCIETMSGRIKQMRRGLR 94 (125)
Q Consensus 73 ~~W~~EL~~m~~RI~~~R~~L~ 94 (125)
++|++|..-|..-|+++|.+|.
T Consensus 111 KqWLEERR~lQgEmQ~LrDKLA 132 (351)
T PF07058_consen 111 KQWLEERRFLQGEMQQLRDKLA 132 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999888775
No 199
>PF03475 3-alpha: 3-alpha domain; InterPro: IPR005163 This small triple helical domain has been predicted to assume a topology similar to helix-turn-helix domains. These domains are found at the C terminus of proteins related to the YiiM protein (P32157 from SWISSPROT) from Escherichia coli.; PDB: 1O67_C 1O65_C.
Probab=26.40 E-value=1.4e+02 Score=17.38 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=23.6
Q ss_pred HHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHH
Q psy9326 44 TLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETM 82 (125)
Q Consensus 44 ~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m 82 (125)
..+.+..|.-+-. ...+..++.-|.|-..|.+.++..
T Consensus 5 ~~~~~~~~~~~~n--~~~l~~ll~~~~La~~Wr~~~~kR 41 (47)
T PF03475_consen 5 ARVNRLLYHDRLN--PEALERLLALPALAESWRKSFEKR 41 (47)
T ss_dssp HHHHHHHHTS-----HHHHHHHHTSTT--HHHHHHHHHH
T ss_pred HHHHHHHhCCCCC--HHHHHHHHcCCcccHHHHHHHHHH
Confidence 3455655655433 567889999999999999887653
No 200
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=26.39 E-value=1.6e+02 Score=25.25 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=45.8
Q ss_pred cCCCCcHHHHHHHHHHHHHhhcCCCcchHHHHHH--H-------H----hCCHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 30 LKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVS--L-------V----LNNPRLYDQWKQCIETMSGRIKQMRRGLRER 96 (125)
Q Consensus 30 ~~~~~~a~~v~sql~~i~R~~yS~PP~~Ga~IV~--~-------I----L~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~ 96 (125)
..+++...++.. +..+..-|.|+..... + . -.|+....-|.++|.++-..|...|.++.++
T Consensus 126 ~G~P~~RRrFLD------~~l~~~~p~y~~~~~~Y~k~lkqRN~~Lk~~~~d~~~L~~~d~qLa~~g~~i~~~R~~~l~~ 199 (363)
T COG1195 126 KGSPSDRRRFLD------WLLFQIEPVYLEALSNYEKLLKQRNALLKQLQGDYAWLDVWDQQLAELGAEIAAARAEYLNA 199 (363)
T ss_pred cCCHHHHHHHHH------HHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 4455666777765432 1 2 2577888999999999999999999999999
Q ss_pred HHhc
Q psy9326 97 LEKL 100 (125)
Q Consensus 97 L~~~ 100 (125)
|...
T Consensus 200 L~~~ 203 (363)
T COG1195 200 LAPL 203 (363)
T ss_pred HHHH
Confidence 9754
No 201
>PF09720 Unstab_antitox: Putative addiction module component; InterPro: IPR013406 This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712 from INTERPRO). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death [] - although these gene pairs are usually found on the bacterial main chromosome.
Probab=26.07 E-value=1.1e+02 Score=18.35 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.4
Q ss_pred CCcchHHHHHHHHhC-----CHhhHHHHHHHHHH
Q psy9326 53 NPPSHGARIVSLVLN-----NPRLYDQWKQCIET 81 (125)
Q Consensus 53 ~PP~~Ga~IV~~IL~-----dp~L~~~W~~EL~~ 81 (125)
.||.--+.+|..|+. ++++-+.|.+|++.
T Consensus 2 L~~~er~~L~e~L~~sl~~~~~~~~~~w~~el~r 35 (54)
T PF09720_consen 2 LPPEERAELAEELWDSLDDPDSEVEAWWKEELER 35 (54)
T ss_pred cCHHHHHHHHHHHHHHhccccccCcHHHHHHHHH
Confidence 355556667777765 56778889998875
No 202
>PF15456 Uds1: Up-regulated During Septation
Probab=26.02 E-value=1.2e+02 Score=21.94 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=24.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 69 PRLYDQWKQCIETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 69 p~L~~~W~~EL~~m~~RI~~~R~~L~~~L 97 (125)
+.-..+|..||.....|+..+|+.|.+-.
T Consensus 87 ~rk~ee~~~eL~~le~R~~~~~~rLLeH~ 115 (124)
T PF15456_consen 87 DRKCEELAQELWKLENRLAEVRQRLLEHT 115 (124)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44568899999999999999999987643
No 203
>PRK12515 RNA polymerase sigma factor; Provisional
Probab=25.43 E-value=1.2e+02 Score=22.14 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=44.4
Q ss_pred HHHHHhhcCCCcchHHHHHHHHhCCHh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Q psy9326 44 TLIVRAMYSNPPSHGARIVSLVLNNPR---LYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWN 107 (125)
Q Consensus 44 ~~i~R~~yS~PP~~Ga~IV~~IL~dp~---L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~~~w~ 107 (125)
..+.+..=..||..-.-++-..+.+-+ +-+.-.--...++.++...|+.|.+.|++.+.+..|.
T Consensus 123 ~~l~~~l~~L~~~~r~vl~l~~~~~~s~~eIA~~lgis~~tV~~~l~Rar~~Lr~~l~~~~~~~~~~ 189 (189)
T PRK12515 123 AALRACLAKLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKTRMFYARKKLAELLKAAGVERGWP 189 (189)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 345556667788876655555544433 3333333457888999999999999999988888884
No 204
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=25.41 E-value=62 Score=20.25 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=16.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q psy9326 24 GNLTLVLKDKSHIPAVKSQIT 44 (125)
Q Consensus 24 Gal~vV~~~~~~a~~v~sql~ 44 (125)
|++.+++++++.++++...++
T Consensus 60 ~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 60 PTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp SEEEEEESSHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHH
Confidence 577888888888888877764
No 205
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=24.94 E-value=1.5e+02 Score=24.07 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9326 76 KQCIETMSGRIKQMRRGLRERLEKLNT 102 (125)
Q Consensus 76 ~~EL~~m~~RI~~~R~~L~~~L~~~~~ 102 (125)
.+.++.++..+.. ++.|.+.|++.|.
T Consensus 264 ~~~l~~~~~~~~~-~~~l~~~L~~~g~ 289 (370)
T TIGR02539 264 VERVKRWDEEVKK-TRWFVAELEDIGF 289 (370)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhCCc
Confidence 4445555555555 4478888887653
No 206
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=24.93 E-value=1.1e+02 Score=23.65 Aligned_cols=49 Identities=16% Similarity=0.345 Sum_probs=37.1
Q ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCccccccccce
Q psy9326 68 NPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNT------PGTWNHITEQIGMF 116 (125)
Q Consensus 68 dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~------~~~w~~i~~Q~GMF 116 (125)
||+-++.+.+.++.+..+|..+-+.+.+.+..... -..|+++.+.-|+.
T Consensus 116 ~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~~~~~~v~~h~~~~Y~~~~~gl~ 170 (256)
T PF01297_consen 116 DPANKDYYEKNAEKYLKELDELDAEIKEKLAKLPGRPVVVYHDAFQYFAKRYGLK 170 (256)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSGGEEEEEESTTHHHHHHTT-E
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCeEEEEChHHHHHHHhcCCc
Confidence 89999999999999999999999988888876552 23455555555543
No 207
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=24.77 E-value=71 Score=26.65 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 71 LYDQWKQCIETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 71 L~~~W~~EL~~m~~RI~~~R~~L~~~L 97 (125)
..+.|+.|+....++++. |.++++..
T Consensus 207 ~~~~~lr~~~~Lv~~l~~-r~~~Y~~~ 232 (292)
T COG4667 207 RLELWLRELPHLVELLQH-REKLYNDI 232 (292)
T ss_pred HHHHHHHHhHHHHHHHHH-hhhhHHHH
Confidence 567899999999999999 88888764
No 208
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=24.77 E-value=1.3e+02 Score=20.79 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=19.1
Q ss_pred HHHHHHHhCCHhhHHHHHHHHHHHHHH
Q psy9326 59 ARIVSLVLNNPRLYDQWKQCIETMSGR 85 (125)
Q Consensus 59 a~IV~~IL~dp~L~~~W~~EL~~m~~R 85 (125)
|.+.+.|++||+-.-.+..+|-.|...
T Consensus 9 A~l~~~ile~PE~ni~~lk~l~~~~~~ 35 (95)
T PF07540_consen 9 ASLASSILEDPEENIGSLKRLLKLCES 35 (95)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 668889999999666666666555443
No 209
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=24.76 E-value=2.2e+02 Score=23.38 Aligned_cols=46 Identities=22% Similarity=0.513 Sum_probs=35.1
Q ss_pred hhcCCCcchHHHHHHHHhCCHhhHHHHH-HH--HHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 49 AMYSNPPSHGARIVSLVLNNPRLYDQWK-QC--IETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 49 ~~yS~PP~~Ga~IV~~IL~dp~L~~~W~-~E--L~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
..+.+||.++..-+...|. |. +| ++.+..|-..+.+.|++.|++.+
T Consensus 223 ~~~~Tp~~~~i~al~~al~-------~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~ 271 (349)
T TIGR01364 223 SMYNTPPTFAIYVSGLVFK-------WLKEQGGVKAIEKRNQAKAQLLYDTIDNSN 271 (349)
T ss_pred CCCCCCcHHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456888887766666554 33 33 89999999999999999999874
No 210
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=24.41 E-value=2.8e+02 Score=21.65 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 79 IETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 79 L~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
.+.+++++.++++.+.+.|.+.+
T Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~g 274 (349)
T cd06454 252 GPERRERLQENVRYLRRGLKELG 274 (349)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcC
Confidence 46678899999999999998764
No 211
>PRK11020 hypothetical protein; Provisional
Probab=24.28 E-value=1.9e+02 Score=21.01 Aligned_cols=35 Identities=17% Similarity=0.347 Sum_probs=28.2
Q ss_pred HhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9326 65 VLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEK 99 (125)
Q Consensus 65 IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~ 99 (125)
--.|+++..+..+|.+.+..+|..++..=...|.+
T Consensus 26 ~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lsk 60 (118)
T PRK11020 26 LRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSK 60 (118)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688899999999999999999988766555543
No 212
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=24.13 E-value=1.9e+02 Score=18.16 Aligned_cols=28 Identities=4% Similarity=0.222 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy9326 75 WKQCIETMSGRIKQMRRGLRERLEKLNT 102 (125)
Q Consensus 75 W~~EL~~m~~RI~~~R~~L~~~L~~~~~ 102 (125)
=.+|++.+..-|-+.|.+++++..+.|.
T Consensus 5 Qk~el~~l~~qm~e~kK~~idk~Ve~G~ 32 (59)
T PF10925_consen 5 QKKELKALYKQMLELKKQIIDKYVEAGV 32 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3689999999999999999999987664
No 213
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=23.94 E-value=1.7e+02 Score=17.39 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=18.2
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy9326 74 QWKQC-IETMSGRIKQMRRGLRERLE 98 (125)
Q Consensus 74 ~W~~E-L~~m~~RI~~~R~~L~~~L~ 98 (125)
.|.+| |++|+.-|+.|...++++++
T Consensus 7 ~~KqEIL~EvrkEl~K~K~EIIeA~~ 32 (40)
T PF08776_consen 7 RLKQEILEEVRKELQKVKEEIIEAIR 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 57788888888888888875
No 214
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=23.82 E-value=1.6e+02 Score=24.92 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=8.9
Q ss_pred ccccccCCccceEEE
Q psy9326 14 SYSIPTDERIGNLTL 28 (125)
Q Consensus 14 ~~~~~ygeRvGal~v 28 (125)
+|.+.-|-++|++.+
T Consensus 266 sK~l~~G~pigav~~ 280 (425)
T PRK07495 266 AKGLAGGFPLAAVTG 280 (425)
T ss_pred hhhhcCCccceEEEE
Confidence 344555667777654
No 215
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=23.73 E-value=2.6e+02 Score=23.70 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 77 QCIETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 77 ~EL~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
.+.+.++.++..+++.|.+.|.+.|
T Consensus 299 ~~~~~~~~~i~~l~~~l~~~L~~~g 323 (452)
T PTZ00094 299 PEWKEYAKQVLKNAKALAAALEKRG 323 (452)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788999999999999997754
No 216
>PF03872 RseA_N: Anti sigma-E protein RseA, N-terminal domain; InterPro: IPR005572 Sigma-E is important for the induction of proteins involved in heat shock response. RseA binds sigma-E via its N-terminal domain, sequestering sigma-E and preventing transcription from heat-shock promoters []. The C-terminal domain is located in the periplasm, and may interact with other protein that signal periplasmic stress.; GO: 0016989 sigma factor antagonist activity; PDB: 1OR7_F 1YFN_G.
Probab=23.69 E-value=90 Score=20.96 Aligned_cols=18 Identities=22% Similarity=0.696 Sum_probs=15.2
Q ss_pred HHHHHHhCCHhhHHHHHH
Q psy9326 60 RIVSLVLNNPRLYDQWKQ 77 (125)
Q Consensus 60 ~IV~~IL~dp~L~~~W~~ 77 (125)
+++..+..|++++..|..
T Consensus 18 ~~l~~l~~d~e~~~~W~r 35 (87)
T PF03872_consen 18 RLLDALDQDPELRQTWQR 35 (87)
T ss_dssp HHHHHHHC-HHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHH
Confidence 788999999999999964
No 217
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.56 E-value=2.8e+02 Score=20.72 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9326 73 DQWKQCIETMSGRIKQMRRGLRERLEKLNTP 103 (125)
Q Consensus 73 ~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~ 103 (125)
..-.+|+.+++.-|.+.|.++...+.+.|.|
T Consensus 92 ~aL~kEI~~Lr~kL~e~r~~~~~~~~k~Gv~ 122 (143)
T PRK11546 92 NAVAKEMENLRQSLDELRVKRDIAMAEAGIP 122 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3457888888989998888888888887776
No 218
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=23.55 E-value=1.9e+02 Score=17.84 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.5
Q ss_pred hCCHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 66 LNNPRLYDQWKQCIETMSGRIKQMRRGL 93 (125)
Q Consensus 66 L~dp~L~~~W~~EL~~m~~RI~~~R~~L 93 (125)
-.||..+..+.+..+++.+|...++..|
T Consensus 42 ~~~~~~~~~l~~k~~~yl~RAE~lk~~L 69 (69)
T PF04212_consen 42 ESNPERRQALRQKMKEYLERAEKLKEYL 69 (69)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3688999999999999999998877654
No 219
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=23.52 E-value=2.4e+02 Score=22.94 Aligned_cols=43 Identities=28% Similarity=0.571 Sum_probs=32.0
Q ss_pred cCCCcchHHHHHHHHhCCHhhHHHHHH-H--HHHHHHHHHHHHHHHHHHHHhc
Q psy9326 51 YSNPPSHGARIVSLVLNNPRLYDQWKQ-C--IETMSGRIKQMRRGLRERLEKL 100 (125)
Q Consensus 51 yS~PP~~Ga~IV~~IL~dp~L~~~W~~-E--L~~m~~RI~~~R~~L~~~L~~~ 100 (125)
+.+||.+|..-+..-|. |.. | ++.+.+|.+++++.|++.|++.
T Consensus 233 ~~Tpn~~~i~~L~aal~-------~l~~~gg~e~i~~~~~~l~~~l~~~l~~~ 278 (355)
T cd00611 233 YNTPPTFAIYMMGLVLK-------WLKEQGGVEAMEKRNRQKAQLLYDTIDNS 278 (355)
T ss_pred CCCChHHHHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 66888777655544443 332 2 7889999999999999999987
No 220
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=23.46 E-value=87 Score=21.12 Aligned_cols=51 Identities=25% Similarity=0.332 Sum_probs=27.7
Q ss_pred HHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9326 43 ITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEK 99 (125)
Q Consensus 43 l~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~ 99 (125)
++.++|..|. ..+..|+..++....+..+=..+.-.| -.+.+|..|+. |.+
T Consensus 3 ~~~v~r~~yg---~~~~~Il~~L~~~~~l~de~la~~~~l--~~~~vRkiL~~-L~~ 53 (105)
T PF02002_consen 3 LKEVVRAFYG---EEAVRILDALLRKGELTDEDLAKKLGL--KPKEVRKILYK-LYE 53 (105)
T ss_dssp ---HHHTTS----STTHHHHHHHHHH--B-HHHHHHTT-S---HHHHHHHHHH-HHH
T ss_pred HHHHHHHHcC---chHHHHHHHHHHcCCcCHHHHHHHhCC--CHHHHHHHHHH-HHH
Confidence 4678899888 456789999887777765434443333 23667777764 443
No 221
>KOG1891|consensus
Probab=23.15 E-value=1.5e+02 Score=24.17 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy9326 70 RLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTW 106 (125)
Q Consensus 70 ~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~~~w 106 (125)
-|...+.+||.++++.-..-|++|+-.+........|
T Consensus 232 ml~~LfkqEl~~IVk~YErYRrALilEknrRagqnQn 268 (271)
T KOG1891|consen 232 MLMKLFKQELFDIVKKYERYRRALILEKNRRAGQNQN 268 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3677899999999999999999999888766655544
No 222
>PF12994 DUF3878: Domain of unknown function, E. rectale Gene description (DUF3878); InterPro: IPR024538 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=22.80 E-value=1.3e+02 Score=25.27 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=47.2
Q ss_pred HHHhhcCCCcchHHHHHHHHhCCHhh---HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhcCCCCCCccc
Q psy9326 46 IVRAMYSNPPSHGARIVSLVLNNPRL---YDQWKQCI-------------ETMSGRIKQMRRGLRERLEKLNTPGTWNHI 109 (125)
Q Consensus 46 i~R~~yS~PP~~Ga~IV~~IL~dp~L---~~~W~~EL-------------~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i 109 (125)
+.|.-=.+|..--++.++.-|.++.- ...-.+.+ +....+++++|.++-.+|++.|..|.|++.
T Consensus 190 ~L~~Yrk~p~k~~~~~la~mL~~~kh~~~~~~l~e~l~~As~~Yp~R~fg~~~~~~~q~~~~~~~~~L~e~Gf~G~~p~~ 269 (299)
T PF12994_consen 190 MLRLYRKHPSKRMARKLARMLHRKKHQKVYDLLIEKLQEASSPYPRRDFGEDIDERIQKKRKQAENELKEQGFEGKYPEY 269 (299)
T ss_pred HHHHHHhCCcHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHhcCCcccCcce
Confidence 33444456777777777777776652 22222333 235678999999999999999999999987
Q ss_pred cccc
Q psy9326 110 TEQI 113 (125)
Q Consensus 110 ~~Q~ 113 (125)
.+..
T Consensus 270 ~~~~ 273 (299)
T PF12994_consen 270 QREE 273 (299)
T ss_pred ecCC
Confidence 6643
No 223
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=22.74 E-value=2.2e+02 Score=18.17 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=23.3
Q ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 67 NNPRLYDQWKQCIETMSGRIKQMRRGL 93 (125)
Q Consensus 67 ~dp~L~~~W~~EL~~m~~RI~~~R~~L 93 (125)
.||..+..+..-..++..|...++..|
T Consensus 44 ~~~~~k~~~~~k~~eyl~RaE~LK~~l 70 (75)
T cd02678 44 KNPKSKESIRAKCTEYLDRAEKLKEYL 70 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999998887665
No 224
>PF12411 Choline_sulf_C: Choline sulfatase enzyme C terminal
Probab=22.73 E-value=1.1e+02 Score=19.13 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCccc
Q psy9326 87 KQMRRGLRERLEKLNTPGTWNHI 109 (125)
Q Consensus 87 ~~~R~~L~~~L~~~~~~~~w~~i 109 (125)
+..|.-++++|++ |..-.|||=
T Consensus 8 QrrRr~V~~AL~~-G~~~~WDyq 29 (54)
T PF12411_consen 8 QRRRRFVYSALKQ-GRFTSWDYQ 29 (54)
T ss_pred HHHHHHHHHHHHc-CCCCCCCCC
Confidence 4557788888865 666678873
No 225
>PRK02948 cysteine desulfurase; Provisional
Probab=22.68 E-value=3e+02 Score=22.14 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=29.1
Q ss_pred cCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 51 YSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 51 yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
.++|+..+..-+..-|.+ + .++++..++++.+.|..|.+.|++.+
T Consensus 233 ~~t~~~~~~~a~~~al~~--~----~~~~~~~~~~~~~~~~~l~~~L~~~~ 277 (381)
T PRK02948 233 PGTVNVPGIAAFLTAAEN--I----LKNMQEESLRFKELRSYFLEQIQTLP 277 (381)
T ss_pred CCCccHHHHHHHHHHHHH--H----HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445555554433333331 1 13467778999999999999998775
No 226
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=22.67 E-value=1.6e+02 Score=20.38 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy9326 79 IETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 79 L~~m~~RI~~~R~~L~~~L 97 (125)
...-..|++..|+.|.++|
T Consensus 78 Ir~QE~rVk~aR~RLaeAL 96 (96)
T PF14048_consen 78 IRRQERRVKKARKRLAEAL 96 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 3333667777777777665
No 227
>PF08663 HalX: HalX domain; InterPro: IPR013971 HalX is a protein of unknown function, previously mis-annotated as HoxA-like transcriptional regulator. It is C-terminal to a CheY-like superfamily domain and suggests a role as a response regulator.
Probab=22.67 E-value=1e+02 Score=20.18 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy9326 76 KQCIETMSGRIKQMRRGLRERLEKLNTP 103 (125)
Q Consensus 76 ~~EL~~m~~RI~~~R~~L~~~L~~~~~~ 103 (125)
.+|-.++..||..+|..|-+.+......
T Consensus 35 seeY~eL~~ri~~lr~~ld~~~~~~d~~ 62 (71)
T PF08663_consen 35 SEEYQELEDRIEELRAELDDTLDEFDDD 62 (71)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 3567778888888888888877665543
No 228
>PF11859 DUF3379: Protein of unknown function (DUF3379); InterPro: IPR021806 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.
Probab=22.20 E-value=2.1e+02 Score=23.10 Aligned_cols=40 Identities=13% Similarity=0.412 Sum_probs=35.4
Q ss_pred HhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHH
Q psy9326 48 RAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQ 88 (125)
Q Consensus 48 R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~ 88 (125)
|..|+-|-..-..++..+-.||+- ++|.+|++.+-.+|++
T Consensus 8 Rr~~aDP~~~d~e~l~a~~~~~~~-~~F~~d~~~lD~~l~~ 47 (232)
T PF11859_consen 8 RRIYADPNDQDPEFLEAAKASPAN-QKFVDDLKQLDAQLEQ 47 (232)
T ss_pred HHHHcCCccCCHHHHHHHHhCHHH-HHHHHHHHHHHHHHHH
Confidence 788999999999999999999985 6788899998888876
No 229
>smart00352 POU Found in Pit-Oct-Unc transcription factors.
Probab=22.08 E-value=1e+02 Score=20.59 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy9326 76 KQCIETMSGRIKQMRRGL 93 (125)
Q Consensus 76 ~~EL~~m~~RI~~~R~~L 93 (125)
..|++.+.++++..|.++
T Consensus 6 ~~ele~~~~~lk~~R~~l 23 (75)
T smart00352 6 PRELEAFAKTFKQRRIKL 23 (75)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 468999999999988653
No 230
>PF07231 Hs1pro-1_N: Hs1pro-1 N-terminus; InterPro: IPR009869 This entry represents the N terminus (approximately 180 residues) of plant Hs1pro-1, which is believed to confer resistance to nematodes [].
Probab=21.93 E-value=3.9e+02 Score=20.79 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=29.0
Q ss_pred HHHHHHHhCCHh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 59 ARIVSLVLNNPR---LYDQWKQCIETMSGRIKQMRRGLRER 96 (125)
Q Consensus 59 a~IV~~IL~dp~---L~~~W~~EL~~m~~RI~~~R~~L~~~ 96 (125)
-|.+++||+||. -|.+|..-|+....+=.++=..|++.
T Consensus 92 FR~is~vLsDpRPYinrrEw~RRlESLa~~qieiia~lcE~ 132 (182)
T PF07231_consen 92 FRFISTVLSDPRPYINRREWTRRLESLATSQIEIIAALCED 132 (182)
T ss_pred HHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 367899999997 67899999998887766655555543
No 231
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=21.92 E-value=4.1e+02 Score=21.08 Aligned_cols=86 Identities=15% Similarity=0.310 Sum_probs=52.0
Q ss_pred cCCccceEEEEcCCCCcH-------HHHHHHHHHHHH-hhcCCCc-chHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHH
Q psy9326 19 TDERIGNLTLVLKDKSHI-------PAVKSQITLIVR-AMYSNPP-SHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQM 89 (125)
Q Consensus 19 ygeRvGal~vV~~~~~~a-------~~v~sql~~i~R-~~yS~PP-~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~ 89 (125)
|.-+.|-..|++++++.. +....--..-.. +.|+.|+ ..|-.-+..-|+ .-|...=.++|=.+...|.+.
T Consensus 10 ~pLklGy~~V~nrsq~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~-~~L~~~I~~~LP~l~~~I~~~ 88 (295)
T PF01031_consen 10 IPLKLGYVGVKNRSQQDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLS-ELLVEHIRKSLPSLKSEIQKK 88 (295)
T ss_dssp S--TT-EEEE--S-HHHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCCeEEEecCCccccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHH-HHHHHHHHHhCcHHHHHHHHH
Confidence 445789999999854432 222222222222 3477643 456555666666 667777888888888888888
Q ss_pred HHHHHHHHHhcCCCCC
Q psy9326 90 RRGLRERLEKLNTPGT 105 (125)
Q Consensus 90 R~~L~~~L~~~~~~~~ 105 (125)
....-+.|+.+|.+-.
T Consensus 89 l~~~~~eL~~lG~~~~ 104 (295)
T PF01031_consen 89 LQEAEKELKRLGPPRP 104 (295)
T ss_dssp HHHHHHHHHTHHHCSS
T ss_pred HHHHHHHHHHhCCCCC
Confidence 8888888888887653
No 232
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=21.83 E-value=80 Score=25.48 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.3
Q ss_pred hCCHhhHHHHHHHHHHHHHHHHH
Q psy9326 66 LNNPRLYDQWKQCIETMSGRIKQ 88 (125)
Q Consensus 66 L~dp~L~~~W~~EL~~m~~RI~~ 88 (125)
++|++|++.=.++|+.|.+||.+
T Consensus 169 lt~~eLrk~a~~~L~~makRi~s 191 (233)
T PF06992_consen 169 LTDEELRKRAKKELKAMAKRIAS 191 (233)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHC
Confidence 89999999999999999999875
No 233
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component. This gene for this monooxygenase is found within apparent operons for the degradation of 4-hydroxyphenylacetic acid in Deinococcus, Thermus and Oceanobacillus. Phylogenetic trees support inclusion of the Bacillus halodurans sequence above trusted although the complete 4-hydroxyphenylacetic acid degradation pathway may not exist in that organism. Generally, this enzyme acts with the assistance of a small flavin reductase domain protein (HpaC) to provide the cycle the flavin reductant for the reaction. This family of sequences is a member of a larger subfamily of monooxygenases (pfam03241).
Probab=21.71 E-value=2.5e+02 Score=24.55 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=52.9
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHHHHHhhcCC---CcchHHHHHHHHhCCHhhHH----HHHHHHHHHHHHHHH
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSN---PPSHGARIVSLVLNNPRLYD----QWKQCIETMSGRIKQ 88 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~---PP~~Ga~IV~~IL~dp~L~~----~W~~EL~~m~~RI~~ 88 (125)
..|++++-...+-++.+....=...++.++|.++.+ +|.+=+.++...-..++..+ ++.+-+..+.+++++
T Consensus 61 ~~g~~~~~~~~~p~s~edL~~r~~~~~~~~~~~~g~~gR~pD~~n~~~~~~~~~~~~~~~~~~~y~~n~~~y~~~~~~ 138 (477)
T TIGR02309 61 EEGKRHGMSFMIPKTKEDLKRRGEAYKLWADQNLGMMGRSPDYLNAVVMAYAASADYFGKSNSEFAENVRNYYEYLRD 138 (477)
T ss_pred CCCCEeehhhcCCCCHHHHHHHHHHHHHHHHHcCCeeecChHHHHHHHHHHHhhHHHHhhcCcHHHHHHHHHHHHHHH
Confidence 479999999999999998877777788888886643 57777777777777766655 566666666666555
No 234
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=21.57 E-value=2.6e+02 Score=25.64 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcchH
Q psy9326 25 NLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHG 58 (125)
Q Consensus 25 al~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~G 58 (125)
...++...++..+++...++...=..|..|..+|
T Consensus 192 v~vv~~~~~~~~~kv~~il~~~~f~~~~~p~~~~ 225 (759)
T PF01496_consen 192 VFVVFFSGKELEEKVKKILRSFGFERYDLPEDEG 225 (759)
T ss_dssp EEEEEEEEGGGHHHHHHHHHTTT--B----GGGG
T ss_pred eEEEEEEchhhHHHHHHHhhccCceecCCCCccc
Confidence 3445555556777888777777666677665544
No 235
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=21.52 E-value=4e+02 Score=20.81 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccc-ccccceeec
Q psy9326 77 QCIETMSGRIKQMRRGLRERLEKLNTPGTWNHIT-EQIGMFSYT 119 (125)
Q Consensus 77 ~EL~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~-~Q~GMFs~~ 119 (125)
+.++++.+++.++++.+.+.|++... +.-+. .+.||+++.
T Consensus 244 ~g~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~~~~iv~f~ 284 (345)
T cd06450 244 DGYGEHIDRIVDLAKYLAELIRADPG---FELLGEPNLSLVCFR 284 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---eEEecCCceeEEEEE
Confidence 56778889999999999999876532 32222 356777664
No 236
>PF02979 NHase_alpha: Nitrile hydratase, alpha chain; InterPro: IPR004232 Nitrile hydratases (4.2.1.84 from EC) are bacterial enzymes that catalyse the hydration of nitrile compounds to the corresponding amides. They are used as biocatalysts in acrylamide production, one of the few commercial scale bioprocesses, as well as in environmental remediation for the removal of nitriles from waste streams. Nitrile hydratases are composed of two subunits, alpha and beta, and are normally active as a tetramer, alpha(2)beta(2). Nitrile hydratases contain either a non-haem iron or a non-corrinoid cobalt centre, both types sharing a highly conserved peptide sequence in the alpha subunit (CXLCSC) that provides all the residues involved in coordinating the metal ion. Each type of nitrile hydratase specifically incorporated its metal with the help of activator proteins encoded by flanking regions of the nitrile hydratase genes that are necessary for metal insertion. The Fe-containing enzyme is photo-regulated: in the dark the enzyme is inactivated due to the association of nitric oxide (NO) to the iron, while in the light the enzyme is active by photo-dissociation of NO. The NO is held in place by a claw setting formed through specific oxygen atoms in two modified cysteines and a serine residue in the active site [, ]. The cobalt-containing enzyme is unaffected by NO, but was shown to undergo a similar effect with carbon monoxide [, ]. Fe- and cobalt-containing enzymes also display different inhibition patterns with nitrophenols. Thiocyanate hydrolase (SCNase) is a cobalt-containing metalloenzyme with a cysteine-sulphinic acid ligand that hydrolyses thiocyanate to carbonyl sulphide and ammonia []. The two enzymes, nitrile hydratase and SCNase, are homologous over regions corresponding to almost the entire coding regions of the genes: the beta and alpha subunits of thiocyanate hydrolase were homologous to the amino- and carboxyl-terminal halves of the beta subunit of nitrile hydratase, and the gamma subunit of thiocyanate hydrolase was homologous to the alpha subunit of nitrile hydratase []. This entry represents the structural domain of the alpha subunit of both iron- and cobalt-containing nitrile hydratases; the alpha subunit is a duplication of two structural repeats, each consisting of 4 layers, alpha/beta/beta/alpha []. This structure is also found in the related protein, the gamma subunit of thiocyanate hydrolase (SCNase).; GO: 0003824 catalytic activity, 0046914 transition metal ion binding, 0006807 nitrogen compound metabolic process; PDB: 2DPP_A 3HHT_A 1V29_A 2ZZD_I 2DXC_F 2DXB_F 2DD5_C 2DD4_C 2ZPH_A 2CYZ_A ....
Probab=21.46 E-value=63 Score=25.33 Aligned_cols=24 Identities=25% Similarity=0.464 Sum_probs=18.7
Q ss_pred CcchHHHHHHHHhCCHhhHHHHHH
Q psy9326 54 PPSHGARIVSLVLNNPRLYDQWKQ 77 (125)
Q Consensus 54 PP~~Ga~IV~~IL~dp~L~~~W~~ 77 (125)
-|..||+||++=-.||+.|+.-..
T Consensus 39 ~P~~GarvVArAW~Dp~FK~rLLa 62 (188)
T PF02979_consen 39 GPRNGARVVARAWTDPAFKARLLA 62 (188)
T ss_dssp SHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred CccccceeehhhhCCHHHHHHHHH
Confidence 599999999999999987665443
No 237
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=21.28 E-value=90 Score=19.92 Aligned_cols=21 Identities=0% Similarity=0.222 Sum_probs=17.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q psy9326 25 NLTLVLKDKSHIPAVKSQITL 45 (125)
Q Consensus 25 al~vV~~~~~~a~~v~sql~~ 45 (125)
.+.+++++++.++++...++.
T Consensus 49 Tilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 49 TILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EEEEEESTTSHHHHHHHHHHT
T ss_pred EEEEEeCCHHHHHHHHHHHHh
Confidence 467899999999998887753
No 238
>PLN03085 nucleobase:cation symporter-1; Provisional
Probab=21.16 E-value=2.4e+02 Score=22.63 Aligned_cols=69 Identities=19% Similarity=0.342 Sum_probs=51.7
Q ss_pred EEcCCCCcHHHHHHHHH-HHHHhhcCCCcchH--------------HHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHH
Q psy9326 28 LVLKDKSHIPAVKSQIT-LIVRAMYSNPPSHG--------------ARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 28 vV~~~~~~a~~v~sql~-~i~R~~yS~PP~~G--------------a~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~ 92 (125)
.|-+......-++..++ .+.++.+.|-|-.| -+.+..||.|....-.|.+-.+++...|..+|..
T Consensus 82 ~~~~~~~i~~laE~rI~eAm~~GeFdNLpG~GKPL~ldd~p~vp~e~r~~nRILknaG~lPpwIeL~KEI~~~i~~lR~~ 161 (221)
T PLN03085 82 SVRSETDIINVVEQRIWHSMEEGHFENLPGKGKPLNLSTNPHADPAEDTLYRILSKNGCAPEWVELNKEIRGQINEWRSA 161 (221)
T ss_pred cccchHhHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCcccCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34333344444455554 56889999988544 4668889999999999999999999999999988
Q ss_pred HHHH
Q psy9326 93 LRER 96 (125)
Q Consensus 93 L~~~ 96 (125)
|.+.
T Consensus 162 Lr~~ 165 (221)
T PLN03085 162 LKKA 165 (221)
T ss_pred HHHH
Confidence 8765
No 239
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=21.01 E-value=2.1e+02 Score=17.31 Aligned_cols=52 Identities=13% Similarity=0.430 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9326 36 IPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERL 97 (125)
Q Consensus 36 a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L 97 (125)
...+.+.+..+ .+.|+-..+-+. .+...+|...+..+...|..+...|...-
T Consensus 27 ~~~l~~~~~~l-~~~W~G~a~~af---------~~~~~~~~~~~~~~~~~L~~~~~~l~~~~ 78 (86)
T PF06013_consen 27 LQQLESSIDSL-QASWQGEAADAF---------QDKFEEWNQAFRQLNEALEELSQALRQAA 78 (86)
T ss_dssp HHHHHHHHHHH-GGGBTSSTSHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhCCchHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666 888996655544 34567899999999999999888877653
No 240
>PHA02616 VP2/VP3; Provisional
Probab=20.95 E-value=1.6e+02 Score=23.64 Aligned_cols=65 Identities=17% Similarity=0.375 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccccc
Q psy9326 36 IPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQ 112 (125)
Q Consensus 36 a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~~Q 112 (125)
.......+..|+|+.|++==..|..||...+++ + |+. .+..+|-.+..+|...|.+.--.-|.+|
T Consensus 35 lPslqdvfnrIa~GIWtSYYnaGrtvvnR~~s~-E--------lqr---LL~dleyGfr~ala~igesDPVnaiv~q 99 (259)
T PHA02616 35 LPSLQDVFNRIARGIWTSYYNAGRTVVNRTASR-E--------LQR---LLSDLEYGFRRALASIGESDPVNAIVNQ 99 (259)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-H--------HHH---HHHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 334566788999999999999999999998873 3 322 2333345555556555555544444443
No 241
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=20.94 E-value=1.9e+02 Score=22.65 Aligned_cols=67 Identities=10% Similarity=0.164 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhcC
Q psy9326 35 HIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMS-----------GRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 35 ~a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~~~W~~EL~~m~-----------~RI~~~R~~L~~~L~~~~ 101 (125)
..+.+...+..+.=+-..+....-+-++..++.||++.+.-.+|++... .++.-+.+-+.+.||-..
T Consensus 259 s~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p 336 (463)
T PF00067_consen 259 SDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGREITFEDLSKLPYLDAVIKETLRLYP 336 (463)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSSSHHHHHHGTGHHHHHHHHHHHHHST
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4566777777777777777777778888899999999999999998764 234446677777777543
No 242
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.86 E-value=3.3e+02 Score=23.53 Aligned_cols=52 Identities=8% Similarity=-0.012 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhcCCCcchHHHH-------HHHHhCCHhhHHHHHHHHHHHHHHHHH
Q psy9326 37 PAVKSQITLIVRAMYSNPPSHGARI-------VSLVLNNPRLYDQWKQCIETMSGRIKQ 88 (125)
Q Consensus 37 ~~v~sql~~i~R~~yS~PP~~Ga~I-------V~~IL~dp~L~~~W~~EL~~m~~RI~~ 88 (125)
+.....+...++..||.|-.....+ +-.+-.+..--.+|.+||..+..-+.+
T Consensus 247 ~~~~~~~~~~~~~rws~~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~ 305 (445)
T PRK13428 247 APTLEVLRTAVSQRWSANSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDA 305 (445)
T ss_pred HHHHHHHHHHHhCccCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 3445668888999999995544443 333444555668999999998876654
No 243
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=20.69 E-value=3.7e+02 Score=22.95 Aligned_cols=68 Identities=19% Similarity=0.457 Sum_probs=40.0
Q ss_pred ccCCccceEEEEcCCCCcHHHHHHHHHH--HHHhhc------CCCcchHHHHHHHHhCCHh-------------hHHHHH
Q psy9326 18 PTDERIGNLTLVLKDKSHIPAVKSQITL--IVRAMY------SNPPSHGARIVSLVLNNPR-------------LYDQWK 76 (125)
Q Consensus 18 ~ygeRvGal~vV~~~~~~a~~v~sql~~--i~R~~y------S~PP~~Ga~IV~~IL~dp~-------------L~~~W~ 76 (125)
.-|+.||.+-+...|.+..+.+.-.+.. ..+..| ..++.++..-+..+..++. +.+.|.
T Consensus 270 ~~g~~c~Gv~l~v~d~~~f~p~~~~~~ll~~l~~~yp~~~~~~~~~~~~~~~~d~l~Gs~~~r~~i~~g~~~~~i~~~w~ 349 (365)
T PF07075_consen 270 YAGELCGGVQLHVTDREAFRPVRTGLALLSALKRLYPEQFRWRDPSEDRRRFFDLLAGSDALREAIEAGASPEEIRASWQ 349 (365)
T ss_pred CCCcEeeeEEEEEechhhcCHHHHHHHHHHHHHHhChhhccccccccccchhhHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 4689999999988888876665554443 344444 3333333344444444444 555566
Q ss_pred HHHHHHHHH
Q psy9326 77 QCIETMSGR 85 (125)
Q Consensus 77 ~EL~~m~~R 85 (125)
+|+++..++
T Consensus 350 ~~~~~f~~~ 358 (365)
T PF07075_consen 350 EELEAFKKR 358 (365)
T ss_pred HHHHHHHHH
Confidence 666666554
No 244
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=20.47 E-value=1.3e+02 Score=16.37 Aligned_cols=15 Identities=13% Similarity=0.352 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy9326 77 QCIETMSGRIKQMRR 91 (125)
Q Consensus 77 ~EL~~m~~RI~~~R~ 91 (125)
++.++..+||+++|.
T Consensus 7 d~f~eFY~rlk~Ike 21 (28)
T PF12108_consen 7 DPFSEFYERLKEIKE 21 (28)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 355666777777664
No 245
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=20.28 E-value=3e+02 Score=21.88 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q psy9326 78 CIETMSGRIKQMRRGLRERLEKLN 101 (125)
Q Consensus 78 EL~~m~~RI~~~R~~L~~~L~~~~ 101 (125)
.++.++.++.++++.+.+.|++.+
T Consensus 272 g~~~~~~~~~~~~~~l~~~l~~~~ 295 (373)
T cd06453 272 GMEAIAAHEHELTAYALERLSEIP 295 (373)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCC
Confidence 356778888888889999887753
No 246
>PF03281 Mab-21: Mab-21 protein
Probab=20.25 E-value=3.9e+02 Score=20.98 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHHHHHhCCHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccc
Q psy9326 36 IPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLY----DQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITE 111 (125)
Q Consensus 36 a~~v~sql~~i~R~~yS~PP~~Ga~IV~~IL~dp~L~----~~W~~EL~~m~~RI~~~R~~L~~~L~~~~~~~~w~~i~~ 111 (125)
...+...|+.+.+.....++.-.+..+.+||==...+ ..|.+ +...+|+.+|=..|.+.|++...|+-|.-
T Consensus 193 ~~~~l~llk~l~~~~~~~~~~l~syhLkt~ll~~~~~~p~~~~W~~--~~l~~~l~~~l~~L~~~L~~~~Lphff~~--- 267 (292)
T PF03281_consen 193 RKKCLRLLKALRDRHLTNLSGLSSYHLKTVLLWLCEKHPSSSDWSE--ENLGERLLDLLDFLIKCLQEGRLPHFFIP--- 267 (292)
T ss_pred HHHHHHHHHHHHHhccccCCCccHHHHHHHHHHHHHcCCCCCCCCh--HHHHHHHHHHHHHHHHHHhcCCCCccCCC---
Confidence 3445566777777777677777777777765422222 26844 46678999999999999999888875543
Q ss_pred cccceeec
Q psy9326 112 QIGMFSYT 119 (125)
Q Consensus 112 Q~GMFs~~ 119 (125)
+.-||..+
T Consensus 268 ~~NLf~~~ 275 (292)
T PF03281_consen 268 NLNLFQHL 275 (292)
T ss_pred CcccCCCC
Confidence 66677654
No 247
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=20.18 E-value=66 Score=21.32 Aligned_cols=36 Identities=14% Similarity=0.246 Sum_probs=27.1
Q ss_pred CCcccccccCCccce--EEEE-cCCCCcHHHHHHHHHHH
Q psy9326 11 NLESYSIPTDERIGN--LTLV-LKDKSHIPAVKSQITLI 46 (125)
Q Consensus 11 ~~~~~~~~ygeRvGa--l~vV-~~~~~~a~~v~sql~~i 46 (125)
|++|..+...|..|. ++++ ..|++..+.+..||..+
T Consensus 29 NI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 29 YISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred ceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCC
Confidence 788888888888774 3333 56777888888888754
No 248
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=20.14 E-value=1.9e+02 Score=19.64 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=31.0
Q ss_pred CccceEEEEcCCCCcHHHHHHHHHHHHHhhcCCCcch
Q psy9326 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSH 57 (125)
Q Consensus 21 eRvGal~vV~~~~~~a~~v~sql~~i~R~~yS~PP~~ 57 (125)
=|+|-.+-+.=+++..+.+...++.+|...-.||-.|
T Consensus 37 vR~gK~~el~ld~~~~e~a~~~v~~mcekLLaNpVIe 73 (83)
T COG1828 37 VRVGKVIELELDAESEEKAEEEVKEMCEKLLANPVIE 73 (83)
T ss_pred eeeeeEEEEEecCcchhHHHHHHHHHHHHHhCCCcee
Confidence 4888888877777777788899999999999999776
No 249
>PRK11915 glycerol-3-phosphate acyltransferase; Reviewed
Probab=20.03 E-value=1.3e+02 Score=27.61 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=22.6
Q ss_pred CCHhh---HHHHHHHHHHHHHHHHHHHHH
Q psy9326 67 NNPRL---YDQWKQCIETMSGRIKQMRRG 92 (125)
Q Consensus 67 ~dp~L---~~~W~~EL~~m~~RI~~~R~~ 92 (125)
++|+| |.+|.+||..+..|+..+|+.
T Consensus 589 ~~~~~~~~r~~~~~el~~~~~~~~~~~~~ 617 (621)
T PRK11915 589 DATDIAKRRQQFADEIATATRRVNTIAEL 617 (621)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36788 899999999999999998854
Done!