RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9326
(125 letters)
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand
2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa}
SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Length = 412
Score = 182 bits (463), Expect = 2e-57
Identities = 60/105 (57%), Positives = 77/105 (73%)
Query: 20 DERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCI 79
+ER+GNLT+V K+ I V SQ+ IVR +SNPP+ GARIV+ L++P L+ +W +
Sbjct: 264 NERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNV 323
Query: 80 ETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRK 124
+TM+ RI MR LR RLE L TPGTWNHIT+QIGMFS+TGLN K
Sbjct: 324 KTMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPK 368
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET:
PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A*
1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A*
1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A*
3hlm_A* 3pdb_A*
Length = 401
Score = 180 bits (459), Expect = 6e-57
Identities = 46/104 (44%), Positives = 65/104 (62%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
ER G T++ +D V+SQ+ +++R MYSNPP +GARI SL+LN P L +W ++
Sbjct: 257 ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVK 316
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRK 124
M+ RI MR L L+K + W HIT+QIGMF +TGL +
Sbjct: 317 GMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPE 360
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 180 bits (458), Expect = 7e-57
Identities = 32/104 (30%), Positives = 47/104 (45%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
ER G L + D + + + + R YS PP HGA+IVS VL P L W +E
Sbjct: 250 ERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELE 309
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRK 124
+ + ++R L L L+ + + E GMFS G +
Sbjct: 310 AVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPE 353
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase,
pyridoxal phosphate, internal ALD schiff base,
amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia
coli k-12} PDB: 3tat_A*
Length = 397
Score = 179 bits (457), Expect = 1e-56
Identities = 38/104 (36%), Positives = 59/104 (56%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
ER+G L+++ +D V Q+ VR YS+PP+ GA++V+ VLN+ L W + +E
Sbjct: 254 ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVE 313
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRK 124
M RI MR+ L + L ++++ Q GMFSYTGL+
Sbjct: 314 EMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAA 357
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease; HET:
LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Length = 420
Score = 180 bits (458), Expect = 1e-56
Identities = 43/104 (41%), Positives = 59/104 (56%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
ER+G L+++ K V SQ+ ++R YSNPP+HG IV+ VL +P L W Q +
Sbjct: 276 ERVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTHGGAIVAAVLASPELRASWVQELG 335
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRK 124
M RI+ MR GL ERL+ ++ I Q GMFSY+GL
Sbjct: 336 EMRDRIRAMRNGLVERLKAAGIERDFSFINAQRGMFSYSGLTSA 379
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 179 bits (457), Expect = 1e-56
Identities = 39/104 (37%), Positives = 62/104 (59%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
R G L + + SQ+ L++R MY+NPP +GA +VS +L +P+L WK+ ++
Sbjct: 265 HRCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYGAWVVSSILKDPQLTALWKKELK 324
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRK 124
MS RI ++R+ L L+ + W+HI Q+GM +YTGL R+
Sbjct: 325 QMSSRIAEVRKRLVSELKACGSVHDWSHIERQVGMMAYTGLTRE 368
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta,
PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia
coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A*
2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A*
1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A*
1asn_A* 1c9c_A* 1cq6_A* ...
Length = 396
Score = 178 bits (455), Expect = 2e-56
Identities = 39/104 (37%), Positives = 62/104 (59%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
ER+G TLV D + SQ+ +RA YSNPP+HGA +V+ +L+N L W+Q +
Sbjct: 253 ERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELT 312
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRK 124
M RI++MR+ L++ ++ I +Q GMFS++GL ++
Sbjct: 313 DMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKE 356
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 174 bits (443), Expect = 2e-54
Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
ER G L +V K++ V + + IVR YS+P H RI+ +LNN L W + +
Sbjct: 256 ERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELS 315
Query: 81 TMSGRIKQMRRGLRERLE----KLNTPGTWNHITEQIGMFSYTGLNRK 124
+S RI R +LE K N WN +Q G+FS+ L K
Sbjct: 316 QLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAK 363
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces
cerevisiae} SCOP: c.67.1.1
Length = 412
Score = 174 bits (443), Expect = 2e-54
Identities = 52/106 (49%), Positives = 71/106 (66%), Gaps = 4/106 (3%)
Query: 21 ERIGNLTLVL----KDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWK 76
ER+G L L ++K+ PAV SQ+ I+R+ SNPP++GA+IV+ +L P L +QW
Sbjct: 261 ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH 320
Query: 77 QCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122
+ + TMS RI +MR LR+ L KL TPG W+HI Q GMFS+TGL
Sbjct: 321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLT 366
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 167 bits (424), Expect = 2e-51
Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 13/117 (11%)
Query: 21 ERIGNLTLVL--------KDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLY 72
ERIG L +V K+K+ A+ S +TL +R +S HGA IV +++++ RL
Sbjct: 284 ERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIHGAYIVQVIVHDKRLL 343
Query: 73 DQWKQCIETMSGRIKQMRRGLRERLEKLNTP-----GTWNHITEQIGMFSYTGLNRK 124
+ ++ MS RI +MR L L K TP GTW+HI IGMF++TGL +
Sbjct: 344 QMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGLTPE 400
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
structure, cytosol; HET: AKG GOL; 2.20A {Veillonella
parvula}
Length = 418
Score = 161 bits (409), Expect = 2e-49
Identities = 12/102 (11%), Positives = 35/102 (34%), Gaps = 4/102 (3%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
+R+G + + D+ RA +SN R ++ ++ +P + +++
Sbjct: 269 QRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERN 328
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122
I+ ++ ++ + + G F +
Sbjct: 329 CYYQLIRDRADIFKQEAAQVG----LPMLPYRGGFFITIPTD 366
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center
for structural genomics, P 5'-phosphate binding; HET:
PLP; 2.86A {Anaerococcus prevotii}
Length = 413
Score = 153 bits (389), Expect = 2e-46
Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 5/103 (4%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
R G + K I ++ + R +SN H A+ + + L ++Q +
Sbjct: 268 LRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGT-HAAQNILIELERAENKKIYEQELV 326
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNR 123
+ +K ++ I G F++ ++
Sbjct: 327 DLRNMLKSRADVFVTAAKENK----LTMIPYFGGFFTFIPTDK 365
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent
aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus
aureus}
Length = 430
Score = 118 bits (298), Expect = 5e-33
Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYD-QWKQCI 79
R+G +T D++ +++++ ++R+ S+ P V VL N + +D + +Q I
Sbjct: 278 FRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNI 337
Query: 80 ETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLN 122
+T+ R + + + + W G F ++
Sbjct: 338 QTLKERYEVTKEVVYADQYHSH----WQAYDFNSGYFMAIKVH 376
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.15
Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 48/121 (39%)
Query: 41 SQITLIVRAM----YSNPPS----------H-----GARIVSLVLNNP------------ 69
SQ + M Y + H G I+ +V+NNP
Sbjct: 1626 SQE----QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 70 -RLYDQW-KQCIETMSGRIKQMRRGLRERLEKLNTPGTWNH------ITE--QIGMF--S 117
R+ + + ET+ + + +E E T T+ T+ Q +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHS-TSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 118 Y 118
Sbjct: 1741 K 1741
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 29.9 bits (68), Expect = 0.17
Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 11/67 (16%)
Query: 53 NPPSHGARIVSL-VLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITE 111
N + A +L + + +S + R L + P + +
Sbjct: 338 NILTMSAGHAALTQIYTRQAASD-------LSASGDRFRANLNRIAVENQAPLQFTGLG- 389
Query: 112 QIGMFSY 118
+ +
Sbjct: 390 --SLGTI 394
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 29.8 bits (68), Expect = 0.17
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 11/67 (16%)
Query: 53 NPPSHGARIVSL-VLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITE 111
+P + A + +L L +Y K + E L++ P T N +
Sbjct: 307 HPITMAAGLATLKALEEEPVYSV-------SREAAKALEEAASEVLDRTGLPYTINRVE- 358
Query: 112 QIGMFSY 118
M
Sbjct: 359 --SMMQL 363
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 29.8 bits (68), Expect = 0.21
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 53 NPPSHGARIVSL-VLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITE 111
NP S + I L VL LY++ + + +G+ E+ K N T N +
Sbjct: 306 NPASMASGIACLEVLQQEGLYEK-------LDELGATLEKGILEQAAKHNIDITLNRLK- 357
Query: 112 QIGMFSY 118
G +
Sbjct: 358 --GALTV 362
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 29.8 bits (68), Expect = 0.22
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 53 NPPSHGARIVSL-VLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITE 111
NP + A I +L +L P Y+ + K++ GL ++ ++
Sbjct: 303 NPLAMTAGIKTLELLRQPGTYEY-------LDQITKRLSDGLLAIAQETGHAACGGQVS- 354
Query: 112 QIGMFSY 118
GMF +
Sbjct: 355 --GMFGF 359
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.33
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 19/45 (42%)
Query: 1 KFSTKKFLYPNLESYSIPTDERIGNLTLVLKDKSHIP--AVKSQI 43
K + KK L++ +L L D + P A+K+ +
Sbjct: 19 KQALKK-----LQA----------SLKLYADDSA--PALAIKATM 46
Score = 24.5 bits (52), Expect = 8.9
Identities = 3/12 (25%), Positives = 7/12 (58%)
Query: 76 KQCIETMSGRIK 87
KQ ++ + +K
Sbjct: 19 KQALKKLQASLK 30
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 29.0 bits (66), Expect = 0.40
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 53 NPPSHGARIVSL-VLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITE 111
NP + A L ++ +Y+ ++ + GLR ++ N P NH+
Sbjct: 304 NPIAMAAGFACLTEISQVGVYET-------LTELTDSLATGLRHAAKEENIPLVVNHVG- 355
Query: 112 QIGMFSY 118
GMF
Sbjct: 356 --GMFGL 360
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 28.7 bits (65), Expect = 0.41
Identities = 6/66 (9%), Positives = 17/66 (25%), Gaps = 11/66 (16%)
Query: 53 NPPSHGARIVSL-VLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITE 111
NP + A I ++ + + + ++ + R + +
Sbjct: 307 NPITAAAAIAAIDTILEDDVCAK-------INDLGQFAREAMNHLFARKGLNWLAYGRF- 358
Query: 112 QIGMFS 117
F
Sbjct: 359 --SGFH 362
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 28.2 bits (64), Expect = 0.77
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 10/66 (15%)
Query: 53 NPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQ 112
NP + A +LV P Y + + + + GLR+ EK P N
Sbjct: 304 NPLAMAAGYETLVQLTPESYVE-------FERKAEMLEAGLRKAAEKHGIPHHINRAG-- 354
Query: 113 IGMFSY 118
M
Sbjct: 355 -SMIGI 359
>3io5_A Recombination and repair protein; storage dimer, inactive
conformation, RECA like core domain, binding, DNA
damage, DNA recombination; 2.40A {Enterobacteria phage
T4}
Length = 333
Score = 26.7 bits (59), Expect = 2.0
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 86 IKQMRRGLRERLEKLNTPGTW-NHITEQIGMFSYT 119
+K + R + N P NH E MFS T
Sbjct: 147 MKSLFRIVTPYFSTKNIPCIAINHTYETQEMFSKT 181
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 26.3 bits (59), Expect = 3.5
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 67 NNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSY 118
NP Y + ++ GL+E L++ P T N + M +
Sbjct: 318 ENPGYYAY-------LEDLGARLEAGLKEVLKEKGLPHTVNRVG---SMITV 359
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ,
structure, DNA-PK, DNA binding protein; NMR {Homo
sapiens} SCOP: a.118.19.1
Length = 152
Score = 25.3 bits (55), Expect = 5.5
Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 19/98 (19%)
Query: 11 NLESYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPR 70
++ S + + +G++ + + K+ + I + N
Sbjct: 19 SVSSLAEGSVTSVGSVNPAENFRVLVKQKKASFEEASNQL-------INHIEQFLDTNET 71
Query: 71 -LYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWN 107
+ + CI RE K + +N
Sbjct: 72 PYFMKSIDCIRAF-----------REEAIKFSEEQRFN 98
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown
function, PSI-2, protein struct initiative; 2.00A
{Coxiella burnetii}
Length = 393
Score = 25.6 bits (55), Expect = 5.9
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 86 IKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRKF 125
+ ++ L K+NT H+ + TG+ +++
Sbjct: 250 LNWLKEALATNQIKVNTSDAGVHVIPEGVFLEKTGIFKQY 289
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 24.6 bits (54), Expect = 7.2
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 30 LKDKSHIPAV------KSQITLIVRAMYSNPPSHG 58
L +H AV +T++V + + PS G
Sbjct: 77 LLGLTHGEAVQLLRSVGDTLTVLVCDGFESGPSSG 111
>1g8k_A Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske,
oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis}
SCOP: b.52.2.2 c.81.1.1 PDB: 1g8j_A*
Length = 825
Score = 25.0 bits (55), Expect = 8.5
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 64 LVLNNPRLYDQWKQCIETMSGRIKQMRR 91
LNN R + W Q M+
Sbjct: 696 FWLNNGRNNEVW-QTA-YHDQYNSLMQE 721
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0791 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,919,467
Number of extensions: 100497
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 32
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)