RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9326
(125 letters)
>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's
yeast (Saccharomyces cerevisiae), cytosolic form [TaxId:
4932]}
Length = 412
Score = 82.7 bits (203), Expect = 2e-20
Identities = 52/109 (47%), Positives = 70/109 (64%), Gaps = 4/109 (3%)
Query: 21 ERIGNLTLVLKD----KSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWK 76
ER+G L L K+ PAV SQ+ I+R+ SNPP++GA+IV+ +L P L +QW
Sbjct: 261 ERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWH 320
Query: 77 QCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRKF 125
+ + TMS RI +MR LR+ L KL TPG W+HI Q GMFS+TGL +
Sbjct: 321 KDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQM 369
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 82.3 bits (202), Expect = 3e-20
Identities = 60/105 (57%), Positives = 76/105 (72%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
ER+GNLT+V K+ I V SQ+ IVR +SNPP+ GARIV+ L++P L+ +W ++
Sbjct: 265 ERVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVK 324
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRKF 125
TM+ RI MR LR RLE L TPGTWNHIT+QIGMFS+TGLN K
Sbjct: 325 TMADRILSMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQ 369
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
(Gallus gallus), mitochondria [TaxId: 9031]}
Length = 401
Score = 80.0 bits (196), Expect = 2e-19
Identities = 46/105 (43%), Positives = 65/105 (61%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
ER G T++ +D V+SQ+ +++R MYSNPP +GARI SL+LN P L +W ++
Sbjct: 257 ERAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVK 316
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRKF 125
M+ RI MR L L+K + W HIT+QIGMF +TGL +
Sbjct: 317 GMADRIISMRTQLVSNLKKEGSSHNWQHITDQIGMFCFTGLKPEQ 361
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 78.9 bits (193), Expect = 5e-19
Identities = 39/107 (36%), Positives = 63/107 (58%)
Query: 19 TDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQC 78
+ER+G TLV D + SQ+ +RA YSNPP+HGA +V+ +L+N L W+Q
Sbjct: 251 YNERVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQE 310
Query: 79 IETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRKF 125
+ M RI++MR+ L++ ++ I +Q GMFS++GL ++
Sbjct: 311 LTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIKQNGMFSFSGLTKEQ 357
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 76.2 bits (186), Expect = 4e-18
Identities = 32/112 (28%), Positives = 47/112 (41%)
Query: 14 SYSIPTDERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYD 73
ER G L + D + + + + R YS PP HGA+IVS VL P L
Sbjct: 243 KNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRA 302
Query: 74 QWKQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRKF 125
W +E + + ++R L L L+ + + E GMFS G +
Sbjct: 303 DWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQ 354
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 75.4 bits (184), Expect = 9e-18
Identities = 38/105 (36%), Positives = 58/105 (55%)
Query: 21 ERIGNLTLVLKDKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIE 80
ER+G L+++ +D V Q+ VR YS+PP+ GA++V+ VLN+ L W +E
Sbjct: 254 ERVGGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVE 313
Query: 81 TMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGMFSYTGLNRKF 125
M RI MR+ L + L ++++ Q GMFSYTGL+
Sbjct: 314 EMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYTGLSAAQ 358
>d1f9ya_ d.58.30.1 (A:) 6-hydroxymethyl-7,8-dihydropterin
pyrophosphokinase, HPPK {Escherichia coli [TaxId: 562]}
Length = 158
Score = 26.3 bits (57), Expect = 1.0
Identities = 19/100 (19%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Query: 21 ERIGNLTLVLK-----DKSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQW 75
+ + LK +SHI V S P A + P
Sbjct: 13 SPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNH 72
Query: 76 KQCIETMSGRIKQMRRGLRERLEKLNTPGTWNHITEQIGM 115
Q IE GR+++ R R L+ N + +
Sbjct: 73 TQRIELQQGRVRKAERWGP-RTLDLDIMLFGNEVINTERL 111
>d1cqxa1 a.1.1.2 (A:1-150) Flavohemoglobin, N-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 150
Score = 26.2 bits (57), Expect = 1.1
Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 33 KSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92
K+ P + I++ Y + +P L + + + + + + R
Sbjct: 11 KATAPVLAEHGYDIIKCFYQR----------MFEAHPELKNVFNMAHQEQGQQQQALARA 60
Query: 93 LRERLEKLNTPGTWNHITEQIG 114
+ E + P + + + I
Sbjct: 61 VYAYAENIEDPNSLMAVLKNIA 82
>d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla
stercoraria [TaxId: 61]}
Length = 144
Score = 25.7 bits (56), Expect = 1.2
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 10/82 (12%)
Query: 33 KSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92
K+ +P +K I Y N L +P + + + + K +
Sbjct: 10 KATVPVLKEHGVTITTTFYKN----------LFAKHPEVRPLFDMGRQESLEQPKALAMT 59
Query: 93 LRERLEKLNTPGTWNHITEQIG 114
+ + + ++I
Sbjct: 60 VLAAAQNIENLPAILPAVKKIA 81
>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 146
Score = 24.9 bits (54), Expect = 2.9
Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 10/82 (12%)
Query: 33 KSHIPAVKSQITLIVRAMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRG 92
K+ IP + + Y + +NP L + + + + + +
Sbjct: 11 KATIPLLVETGPKLTAHFYDR----------MFTHNPELKEIFNMSNQRNGDQREALFNA 60
Query: 93 LRERLEKLNTPGTWNHITEQIG 114
+ + E+I
Sbjct: 61 IAAYASNIENLPALLPAVEKIA 82
>d1lshb_ f.7.1.1 (B:) Lipovitellin-phosvitin complex; beta-sheet
shell regions {Lamprey (Ichthyomyzon unicuspis) [TaxId:
30308]}
Length = 174
Score = 24.0 bits (52), Expect = 5.2
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 49 AMYSNPPSHGARIVSLVLNNPRLYDQWKQCIETM 82
+Y S+G +V WK C +
Sbjct: 24 TLYYGLTSNGLPKAKIVAVELSDLSVWKLCAKFR 57
>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase
{Streptoverticillium mobaraense [TaxId: 35621]}
Length = 331
Score = 23.9 bits (51), Expect = 6.8
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 56 SHGARIVSLVLNNPRLYDQWKQCIETMSGRIKQMRRGLRERLEKLNTPGTW 106
R ++V N R +W+Q GR +QM RE L TW
Sbjct: 22 PSYGRAETVVNNYIR---KWQQVYSHRDGRKQQMTEEQREWLSYGCVGVTW 69
>d1v7ba2 a.121.1.1 (A:75-175) Transcriptional regulator Cgl2612
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 101
Score = 23.3 bits (50), Expect = 7.0
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 47 VRAMYSNPPSHGARIVSLVL-----NNPRLYDQWKQCIETMSGRIKQMR---RGLRERLE 98
+RA+ + L+L ++P + W+ + L
Sbjct: 7 LRAVVVTL-AENVSRPELLLLIDAPSHPDFLNAWRTVNHQWIPDTDDLENDAHKRAVYLV 65
Query: 99 KLNTPGTWNH 108
+L G + H
Sbjct: 66 QLAADGLFVH 75
>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 23.9 bits (51), Expect = 7.4
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 87 KQMRRG---LRERLEKLNTPGTWNHITEQIGMFSYTGLNRK 124
KQ R G ERLE L PGT+ I + + + K
Sbjct: 28 KQHRAGKLTAWERLELLLDPGTFVEIDKFVEHRNTYFGLDK 68
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 23.6 bits (50), Expect = 9.4
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 89 MRRGLRERLEKLNTPGTWNHITEQIGM 115
MR R RL L G+ + ++
Sbjct: 31 MRMTARNRLHSLLDEGSLVELGSELEP 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 473,148
Number of extensions: 19883
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 18
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.0 bits)