BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9327
(641 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKR|B Chain B, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of
The Copi Vesicular Coat
Length = 320
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/131 (55%), Positives = 95/131 (72%), Gaps = 3/131 (2%)
Query: 426 GSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVMAFPTR--KGPGIK 483
GSFETA +LLHDQ+GV F PY+Q+FL +Y + RT Y LP L + +P R K G+K
Sbjct: 30 GSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLK 89
Query: 484 ENSHPATNIKLEQLIAKIQQCYQLTTSGKFVDAIEKLRNVLISIPLLVVTTKKEIEEAKQ 543
N PA +KL LI ++Q CYQLTT GKF +A+EK R++L+S+PLLVV K+EI EA+Q
Sbjct: 90 -NGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 148
Query: 544 IINICKEYIVG 554
+I IC+EYIVG
Sbjct: 149 LITICREYIVG 159
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 118 bits (296), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 30/191 (15%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F +S RVKG+ FHP PW+L++L++G ++LW+Y + E PVR
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA-------- 60
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
GK I A + I+ V DD++I+V+NY + + H DYI
Sbjct: 61 -----GKFI--ARKNWII-------------VGSDDFRIRVFNYNTGEKVVDFEAHPDYI 100
Query: 125 RTTFFHHEYPWILSASDDQTIRIWYWQSRNCI-CVLTGHNHYVMCAQFHPTD-DIVVSAS 182
R+ H P++LS SDD T+++W W++ + GH H+VMC F+P D S
Sbjct: 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
Query: 183 LDQTIRVWDIS 193
LD+T++VW +
Sbjct: 161 LDRTVKVWSLG 171
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 30/191 (15%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F +S RVKG+ FHP PW+L++L++G +++W+Y + E PVR
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA-------- 60
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
GK I A + I+ V DD++I+V+NY + + H DYI
Sbjct: 61 -----GKFI--ARKNWII-------------VGSDDFRIRVFNYNTGEKVVDFEAHPDYI 100
Query: 125 RTTFFHHEYPWILSASDDQTIRIWYWQSRNCI-CVLTGHNHYVMCAQFHPTD-DIVVSAS 182
R+ H P++LS SDD T+++W W++ + GH H+VMC F+P D S
Sbjct: 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
Query: 183 LDQTIRVWDIS 193
LD+T++VW +
Sbjct: 161 LDRTVKVWSLG 171
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 30/191 (15%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F +S RVKG+ FHP PW+L++L++G ++LW+Y + E PVR
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA-------- 60
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
GK I A + I+ V DD++I+V+NY + + H DYI
Sbjct: 61 -----GKFI--ARKNWII-------------VGSDDFRIRVFNYNTGEKVVDFEAHPDYI 100
Query: 125 RTTFFHHEYPWILSASDDQTIRIWYWQSRNCI-CVLTGHNHYVMCAQFHPTD-DIVVSAS 182
R+ H P++LS SDD T+++W W++ + GH H+VMC F+P D S
Sbjct: 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
Query: 183 LDQTIRVWDIS 193
LD+T++VW +
Sbjct: 161 LDRTVKVWSLG 171
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 30/191 (15%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F +S RVKG+ FHP PW+L++L++G ++LW+Y + E PVR
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRA-------- 60
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
GK I A + I+ V DD++I+V+NY + + H DYI
Sbjct: 61 -----GKFI--ARKNWII-------------VGSDDFRIRVFNYNTGEKVVDFEAHPDYI 100
Query: 125 RTTFFHHEYPWILSASDDQTIRIWYWQSRNCI-CVLTGHNHYVMCAQFHPTD-DIVVSAS 182
R+ H P++LS SDD T+++W W++ + GH H+VMC F+P D S
Sbjct: 101 RSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160
Query: 183 LDQTIRVWDIS 193
LD+T++VW +
Sbjct: 161 LDRTVKVWSLG 171
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 97/214 (45%), Gaps = 34/214 (15%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG- 70
V +S P I+S+ + I++W+ + ++ F H VR + + + S
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN 254
Query: 71 ----KMIVMAYQGCILESRN------------EPCLFRIKSVLGDDYK------------ 102
++ V+A + C E R E I G + K
Sbjct: 255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG 314
Query: 103 -----IKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCIC 157
IK+W+ C+ TL+GH +++R FH +ILS +DD+T+R+W ++++ C+
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374
Query: 158 VLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
L H H+V FH T VV+ S+DQT++VW+
Sbjct: 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 56/103 (54%)
Query: 90 LFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWY 149
+F + +D IKVW+Y+ TL GH D ++ F H + S S D TI++W
Sbjct: 119 VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178
Query: 150 WQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
+Q CI + GH+H V P D +VSAS D+TI++W++
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 221
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 34/211 (16%)
Query: 17 FHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMA 76
FHP ++S+ + I++WDY H V+ I F + + S + +
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 77 ---YQG--CILESRNEPCLFRIKSVL--GD-------DYKIKVWNYKQRKCIFTLLGHLD 122
+QG CI S++ GD D IK+W + C+ T GH +
Sbjct: 176 LWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE 235
Query: 123 YIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD------ 176
++R + + I S S+DQT+R+W ++ C L H H V C + P
Sbjct: 236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE 295
Query: 177 --------------IVVSASLDQTIRVWDIS 193
++S S D+TI++WD+S
Sbjct: 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 115 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPT 174
+ L GH + FH + ++SAS+D TI++W +++ + L GH V F +
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 161
Query: 175 DDIVVSASLDQTIRVWDISGL 195
++ S S D TI++WD G
Sbjct: 162 GKLLASCSADMTIKLWDFQGF 182
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 35/193 (18%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+ E S+ V+G++F P I S+ + ++LW+ R LL+ H V G+ F
Sbjct: 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPD- 68
Query: 64 PIFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDY 123
G+ I A DD +K+WN + + + TL GH
Sbjct: 69 ------GQTIASAS---------------------DDKTVKLWN-RNGQLLQTLTGHSSS 100
Query: 124 IRTTFFHHEYPWILSASDDQTIRIWYWQSRNC--ICVLTGHNHYVMCAQFHPTDDIVVSA 181
+R F + I SASDD+T+++W +RN + LTGH+ V F P + SA
Sbjct: 101 VRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA 157
Query: 182 SLDQTIRVWDISG 194
S D+T+++W+ +G
Sbjct: 158 SDDKTVKLWNRNG 170
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 99/215 (46%), Gaps = 32/215 (14%)
Query: 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH 60
+L S+ V G++F P I S+ + ++LW+ R LL+ H V G+ F
Sbjct: 254 LLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 312
Query: 61 -NQQPIFVSGGKMIVMAYQGCILESRNEPCLFRI----KSVLG--------------DDY 101
+ Q I + V L +RN L + SV G DD
Sbjct: 313 PDGQTIASASDDKTVK------LWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDK 366
Query: 102 KIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNC--ICVL 159
+K+WN + + + TL GH +R F + I SASDD+T+++W +RN + L
Sbjct: 367 TVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTL 422
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 194
TGH+ V F P D + SAS D+T+++W+ +G
Sbjct: 423 TGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 97/202 (48%), Gaps = 22/202 (10%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH-NQQPIFV 67
S+ V G++F P I S+ + ++LW+ R LL+ H VRG+ F + Q I
Sbjct: 344 SSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402
Query: 68 SGGKMIVMAYQ--GCILESRN-----------EPCLFRIKSVLGDDYKIKVWNYKQRKCI 114
+ V + G +L++ P I S DD +K+WN + + +
Sbjct: 403 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASA-SDDKTVKLWN-RNGQLL 460
Query: 115 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNC--ICVLTGHNHYVMCAQFH 172
TL GH +R F + I SASDD+T+++W +RN + LTGH+ V F
Sbjct: 461 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVRGVAFS 517
Query: 173 PTDDIVVSASLDQTIRVWDISG 194
P + SAS D+T+++W+ +G
Sbjct: 518 PDGQTIASASDDKTVKLWNRNG 539
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 97/207 (46%), Gaps = 22/207 (10%)
Query: 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH 60
+L S+ V+G++F P I S+ + ++LW+ R LL+ H V G+ F
Sbjct: 377 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 435
Query: 61 -NQQPIFVSGGKMIVMAYQ--GCILESRN-----------EPCLFRIKSVLGDDYKIKVW 106
+ Q I + V + G +L++ P I S DD +K+W
Sbjct: 436 PDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA-SDDKTVKLW 494
Query: 107 NYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNC--ICVLTGHNH 164
N + + + TL GH +R F + I SASDD+T+++W +RN + LTGH+
Sbjct: 495 N-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSS 550
Query: 165 YVMCAQFHPTDDIVVSASLDQTIRVWD 191
V F P + SAS D+T+++W+
Sbjct: 551 SVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 99/210 (47%), Gaps = 22/210 (10%)
Query: 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH 60
+L S+ V+G++F P I S+ + ++LW+ R LL+ H V G+ F
Sbjct: 90 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFS 148
Query: 61 -NQQPIFVSGGKMIVMAYQ--GCILESRN-----------EPCLFRIKSVLGDDYKIKVW 106
+ Q I + V + G +L++ P I S DD +K+W
Sbjct: 149 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA-SDDKTVKLW 207
Query: 107 NYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNC--ICVLTGHNH 164
N + + + TL GH +R F + I SASDD+T+++W +RN + LTGH+
Sbjct: 208 N-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSS 263
Query: 165 YVMCAQFHPTDDIVVSASLDQTIRVWDISG 194
V F P + SAS D+T+++W+ +G
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLWNRNG 293
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 35/196 (17%)
Query: 1 MLTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH 60
+L S+ V G++F P I S+ + ++LW+ R LL+ H VRG+ F
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 230
Query: 61 NQQPIFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGH 120
G+ I A DD +K+WN + + + TL GH
Sbjct: 231 PD-------GQTIASAS---------------------DDKTVKLWN-RNGQLLQTLTGH 261
Query: 121 LDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNC--ICVLTGHNHYVMCAQFHPTDDIV 178
+ F + I SASDD+T+++W +RN + LTGH+ V F P +
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLW---NRNGQLLQTLTGHSSSVWGVAFSPDGQTI 318
Query: 179 VSASLDQTIRVWDISG 194
SAS D+T+++W+ +G
Sbjct: 319 ASASDDKTVKLWNRNG 334
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 136 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 315
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 316 IASAALENDKTIKLW 330
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 66 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 125
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 126 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 158
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 50/265 (18%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 106
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 107 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 140 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 192 ISG------LRKKNVAP---------GMGKLVLSMKSKHPIWKYCKPVKYCNPKHTLHIC 236
+ L + P G L ++ + +W Y K C +T H
Sbjct: 200 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK--GKCLKTYTGH-- 255
Query: 237 NRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 256 --KNEKYC-IFANFSVTGGKWIVSG 277
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 217 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 272
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 273 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 311
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 312 TENIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 17 FHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG-----K 71
F+P+ I+S + +++WD + L+ H PV + F+ + VS +
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 72 MIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGHL 121
+ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Query: 122 DY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIV 178
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I+
Sbjct: 259 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENII 318
Query: 179 VSASL--DQTIRVW 190
SA+L D+TI++W
Sbjct: 319 ASAALENDKTIKLW 332
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 68 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 127
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 128 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 160
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 50/265 (18%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 108
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 109 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 142 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 192 ISG------LRKKNVAP---------GMGKLVLSMKSKHPIWKYCKPVKYCNPKHTLHIC 236
+ L + P G L ++ + +W Y K C +T H
Sbjct: 202 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK--GKCLKTYTGH-- 257
Query: 237 NRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 258 --KNEKYC-IFANFSVTGGKWIVSG 279
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 219 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 274
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 275 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 313
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 314 TENIIASAALENDKTIKLW 332
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 297 IASAALENDKTIKLW 311
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 87
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 88 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNDLKLWDYSK--GKCLKTYTGH- 236
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 237 ---KNEKYC-IFANFSVTGGKWIVSG 258
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 198 VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 253
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 254 WIVSGSE---------------------DNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 293 TENIIASAALENDKTIKLW 311
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 300 IASAALENDKTIKLW 314
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 50/265 (18%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 90
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 91 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 192 ISG------LRKKNVAP---------GMGKLVLSMKSKHPIWKYCKPVKYCNPKHTLHIC 236
+ L + P G L ++ + +W Y K C +T H
Sbjct: 184 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK--GKCLKTYTGH-- 239
Query: 237 NRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 240 --KNEKYC-IFANFSVTGGKWIVSG 261
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 256
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 257 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 296 TENIIASAALENDKTIKLW 314
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 297 IASAALENDKTIKLW 311
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 87
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 88 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSK--GKCLKTYTGH- 236
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 237 ---KNEKYC-IFANFSVTGGKWIVSG 258
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 198 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 253
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 254 WIVSGSE---------------------DNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 293 TENIIASAALENDKTIKLW 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 300 IASAALENDKTIKLW 314
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 90
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 91 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 184 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSK--GKCLKTYTGH- 239
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 240 ---KNEKYC-IFANFSVTGGKWIVSG 261
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 256
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 257 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 296 TENIIASAALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 119 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 179 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 298
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 299 IASAALENDKTIKLW 313
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 49 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 108
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 109 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 141
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 31 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 89
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 90 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 122
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 123 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 182
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 183 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSK--GKCLKTYTGH- 238
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 239 ---KNEKYC-IFANFSVTGGKWIVSG 260
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 200 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 255
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 256 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 294
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 295 TENIIASAALENDKTIKLW 313
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 299
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 300 IASAALENDKTIKLW 314
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 50 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 109
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 110 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 142
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 50/265 (18%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 32 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 90
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 91 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 124 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 183
Query: 192 ISG------LRKKNVAP---------GMGKLVLSMKSKHPIWKYCKPVKYCNPKHTLHIC 236
+ L + P G L ++ + +W Y K C +T H
Sbjct: 184 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK--GKCLKTYTGH-- 239
Query: 237 NRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 240 --KNEKYC-IFANFSVTGGKWIVSG 261
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 201 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 256
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 257 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 295
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 296 TENIIASAALENDKTIKLW 314
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 114 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 294 IASAALENDKTIKLW 308
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 84
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 85 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 178 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSK--GKCLKTYTGH- 233
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 234 ---KNEKYC-IFANFSVTGGKWIVSG 255
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 250
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 251 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 290 TENIIASAALENDKTIKLW 308
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 114 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 293
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 294 IASAALENDKTIKLW 308
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 44 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 103
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 104 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 136
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 84
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 85 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 118 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 177
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 178 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSK--GKCLKTYTGH- 233
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 234 ---KNEKYC-IFANFSVTGGKWIVSG 255
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 250
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 251 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 289
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 290 TENIIASAALENDKTIKLW 308
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 131 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 191 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 310
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 311 IASAALENDKTIKLW 325
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 61 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 120
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 121 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 153
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 43 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 101
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 102 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 134
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 135 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 194
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 195 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSK--GKCLKTYTGH- 250
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 251 ---KNEKYC-IFANFSVTGGKWIVSG 272
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 212 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 267
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 268 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 306
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 307 TENIIASAALENDKTIKLW 325
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 115 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 175 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 294
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 295 IASAALENDKTIKLW 309
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 45 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 104
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 105 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 137
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 27 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 85
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 86 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 118
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 119 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 178
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 179 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSK--GKCLKTYTGH- 234
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 235 ---KNEKYC-IFANFSVTGGKWIVSG 256
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 196 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 251
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 252 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 290
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 291 TENIIASAALENDKTIKLW 309
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 110 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 170 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 289
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 290 IASAALENDKTIKLW 304
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 40 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 99
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 100 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 132
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 50/265 (18%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 22 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 80
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 81 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 113
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 114 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 173
Query: 192 ISG------LRKKNVAP---------GMGKLVLSMKSKHPIWKYCKPVKYCNPKHTLHIC 236
+ L + P G L ++ + +W Y K C +T H
Sbjct: 174 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK--GKCLKTYTGH-- 229
Query: 237 NRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 230 --KNEKYC-IFANFSVTGGKWIVSG 251
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 191 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 246
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 247 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 285
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 286 TENIIASAALENDKTIKLW 304
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 113 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 233 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 292
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 293 IASAALENDKTIKLW 307
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 43 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 102
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 103 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 135
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 50/265 (18%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 25 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 83
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 84 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 116
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 117 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 176
Query: 192 ISG------LRKKNVAP---------GMGKLVLSMKSKHPIWKYCKPVKYCNPKHTLHIC 236
+ L + P G L ++ + +W Y K C +T H
Sbjct: 177 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK--GKCLKTYTGH-- 232
Query: 237 NRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 233 --KNEKYC-IFANFSVTGGKWIVSG 254
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 27/139 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P +IL++ + ++LWDY L+ + H+ I F N V+GGK
Sbjct: 194 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGK 249
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
IV + D + +WN + ++ + L GH D + +T H
Sbjct: 250 WIVSGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHP 288
Query: 132 EYPWILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 289 TENIIASAALENDKTIKLW 307
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI++W
Sbjct: 297 IASAALENDKTIKLW 311
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ +S + +I++W + H+ + + + + + VS
Sbjct: 29 VSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 87
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 88 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKG--KCLKTYTGH- 236
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 237 ---KNEKYC-IFANFSVTGGKWIVSG 258
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 27/136 (19%)
Query: 15 LSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIV 74
+ F P +IL++ + ++LWDY L+ + H+ I F N V+GGK IV
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGKWIV 256
Query: 75 MAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP 134
+ D + +WN + ++ + L GH D + +T H
Sbjct: 257 SGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 135 WILSAS--DDQTIRIW 148
I SA+ +D+TI++W
Sbjct: 296 IIASAALENDKTIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 20/195 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 178 VVSASL--DQTIRVW 190
+ SA+L D+TI+++
Sbjct: 297 IASAALENDKTIKLY 311
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 87
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 88 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKG--KCLKTYTGH- 236
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 237 ---KNEKYC-IFANFSVTGGKWIVSG 258
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 27/136 (19%)
Query: 15 LSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIV 74
+ F P +IL++ + ++LWDY L+ + H+ I F N V+GGK IV
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGKWIV 256
Query: 75 MAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP 134
+ D + +WN + ++ + L GH D + +T H
Sbjct: 257 SGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 135 WILSAS--DDQTIRIW 148
I SA+ +D+TI+++
Sbjct: 296 IIASAALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGG----- 70
+F+P+ I+S + +++WD + L+ H PV + F+ + VS
Sbjct: 117 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 71 KMIVMAYQGCI---LESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGH 120
++ A C+ ++ N P F S G D +K+W+Y + KC+ T GH
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 121 LDY---IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ I F WI+S S+D + IW Q++ + L GH V+ HPT++I
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 178 VVSASL--DQTIRV 189
+ SA+L D+TI++
Sbjct: 297 IASAALENDKTIKL 310
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D IK+W K T+ GH I + + ++SASDD+T++IW S C+ L
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTL 106
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
GH++YV C F+P +++VS S D+++R+WD+
Sbjct: 107 KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 107/266 (40%), Gaps = 52/266 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK 71
V + F P W+ SS + +I++W + H+ + + + + + VS
Sbjct: 29 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSAS- 87
Query: 72 MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHH 131
DD +K+W+ KC+ TL GH +Y+ F+
Sbjct: 88 ---------------------------DDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 120
Query: 132 EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
+ I+S S D+++RIW ++ C+ L H+ V F+ ++VS+S D R+WD
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 192 I-SGLRKKNV-------------APGMGKLVLS--MKSKHPIWKYCKPVKYCNPKHTLHI 235
SG K + +P GK +L+ + + +W Y K C +T H
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYSKG--KCLKTYTGH- 236
Query: 236 CNRKMEPLCNIHENTRVKSGAWDESG 261
K E C I N V G W SG
Sbjct: 237 ---KNEKYC-IFANFSVTGGKWIVSG 258
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 27/135 (20%)
Query: 15 LSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIV 74
+ F P +IL++ + ++LWDY L+ + H+ I F N V+GGK IV
Sbjct: 201 VKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCI-FAN---FSVTGGKWIV 256
Query: 75 MAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP 134
+ D + +WN + ++ + L GH D + +T H
Sbjct: 257 SGSE---------------------DNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 135 WILSAS--DDQTIRI 147
I SA+ +D+TI++
Sbjct: 296 IIASAALENDKTIKL 310
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 91/199 (45%), Gaps = 17/199 (8%)
Query: 5 FETKSARVKGLSF--HPKRPWILSSLHNGVIQLWDY-RMNTLLEKFDEHEGPVRGICFHN 61
FE ++ V+ L + +I++ + + +W + +++ + +EH+ P + FH
Sbjct: 199 FEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP---LVFHT 255
Query: 62 --QQPIFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLG 119
+ P FV +G + R I D + VW+ Q KC++ L G
Sbjct: 256 PEENPYFVG-------VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG 308
Query: 120 HLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 179
H D I +T + HE +SAS D TIRIW ++ + L GH + +D +V
Sbjct: 309 HTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT--ALVGLLRLSDKFLV 366
Query: 180 SASLDQTIRVWDISGLRKK 198
SA+ D +IR WD + +K
Sbjct: 367 SAAADGSIRGWDANDYSRK 385
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 98 GDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCIC 157
DD I+V++ +K + L GH + + H ++S S D+T+R+W + C
Sbjct: 139 ADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTH 197
Query: 158 VLTGHNHYVMCAQFHPTDDI--VVSASLDQTIRVWDISGLRKKNVAPGMGK 206
V GHN V C +I +V+ S D T+ VW L K++ P G+
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK---LPKESSVPDHGE 245
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 116 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD 175
TL GH+ + T E ++++ +DD+ IR++ ++ + L+GH+ V ++
Sbjct: 116 TLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 173
Query: 176 DIVVSASLDQTIRVWDI 192
I+VS S D+T+RVWDI
Sbjct: 174 GILVSGSTDRTVRVWDI 190
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 27/122 (22%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIR--TTFFHHEYPWILSASDDQTIRIWYWQSRNCI- 156
D ++VW+ K+ C GH +R + +I++ S D T+ +W + +
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 157 ----------------------CVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 194
VL GH V H +IVVS S D T+ VWD++
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG--NIVVSGSYDNTLIVWDVAQ 299
Query: 195 LR 196
++
Sbjct: 300 MK 301
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 36/184 (19%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
++ V+ + H KR ++S + +++WD L H VR + +
Sbjct: 199 TSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--------D 248
Query: 69 GGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTF 128
G +++ AY D+ +KVW+ + C+ TL GH + + +
Sbjct: 249 GRRVVSGAY----------------------DFMVKVWDPETETCLHTLQGHTNRVYSLQ 286
Query: 129 FHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIR 188
F + ++S S D +IR+W ++ NCI LTGH + + D+I+VS + D T++
Sbjct: 287 FDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNADSTVK 342
Query: 189 VWDI 192
+WDI
Sbjct: 343 IWDI 346
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 99 DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICV 158
DD +KVW+ KC+ TL+GH + ++ I+S S D+T+++W ++ CI
Sbjct: 137 DDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGSTDRTLKVWNAETGECIHT 194
Query: 159 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
L GH V C H + VVS S D T+RVWDI
Sbjct: 195 LYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI 226
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D +KVWN + +CI TL GH +R H + ++S S D T+R+W ++ C+ VL
Sbjct: 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDIETGQCLHVL 235
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
GH V C Q+ VVS + D ++VWD
Sbjct: 236 MGHVAAVRCVQYDGRR--VVSGAYDFMVKVWD 265
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 106 WNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHY 165
W + K L GH D++ T I+S SDD T+++W + C+ L GH
Sbjct: 103 WRRGELKSPKVLKGHDDHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG 161
Query: 166 VMCAQFHPTDDIVVSASLDQTIRVWD 191
V +Q D+I++S S D+T++VW+
Sbjct: 162 VWSSQMR--DNIIISGSTDRTLKVWN 185
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D + VW+ Q KC++ L GH D I +T + HE +SAS D TIRIW ++ L
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTL 348
Query: 160 TGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKK 198
GH + +D +VSA+ D +IR WD + +K
Sbjct: 349 QGHT--ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK 385
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 98 GDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCIC 157
DD I+V++ +K + L GH + + H ++S S D+T+R+W + C
Sbjct: 139 ADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTH 197
Query: 158 VLTGHNHYVMCAQFHPTDDI--VVSASLDQTIRVWDISGLRKKNVAPGMGK 206
V GHN V C +I +V+ S D T+ VW L K++ P G+
Sbjct: 198 VFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK---LPKESSVPDHGE 245
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 28/194 (14%)
Query: 15 LSFHPKRPWILSSLHNGV---------IQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPI 65
LS H W L H G+ +++WD + F+ H VR + + I
Sbjct: 158 LSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNI 217
Query: 66 FVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGD-----DYKIKVWNYKQRKCIFT--LL 118
K IV + L P +S + D DY + V++ + F L
Sbjct: 218 -----KYIVTGSRDNTLHVWKLPK----ESSVPDHGEEHDYPL-VFHTPEENPYFVGVLR 267
Query: 119 GHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIV 178
GH +RT H ++S S D T+ +W C+ +L+GH + +
Sbjct: 268 GHXASVRTVSGHGNI--VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 179 VSASLDQTIRVWDI 192
+SAS D TIR+WD+
Sbjct: 326 ISASXDTTIRIWDL 339
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 116 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD 175
TL GH + T E ++++ +DD+ IR++ ++ + L+GH+ V ++
Sbjct: 116 TLRGHXTSV-ITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY-AHG 173
Query: 176 DIVVSASLDQTIRVWDI 192
I+VS S D+T+RVWDI
Sbjct: 174 GILVSGSTDRTVRVWDI 190
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 27/119 (22%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIR--TTFFHHEYPWILSASDDQTIRIWYWQSRNCI- 156
D ++VW+ K+ C GH +R + +I++ S D T+ +W + +
Sbjct: 182 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241
Query: 157 ----------------------CVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDIS 193
VL GH V H +IVVS S D T+ VWD++
Sbjct: 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHG--NIVVSGSYDNTLIVWDVA 298
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 12/100 (12%)
Query: 123 YIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSAS 182
YIR+ F + ++ + ++D+ IRIW ++R + +L GH + + P+ D +VS S
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 183 LDQTIRVWDI------------SGLRKKNVAPGMGKLVLS 210
D+T+R+WD+ G+ V+PG GK + +
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 224
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%)
Query: 99 DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICV 158
+D I++W+ + RK + L GH I + + ++S S D+T+RIW ++ C
Sbjct: 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 202
Query: 159 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
L+ + A + + SLD+ +RVWD
Sbjct: 203 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 82/213 (38%), Gaps = 33/213 (15%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG-G 70
++ + F P ++ + + +I++WD ++ HE + + + VSG G
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 71 KMIVMAYQ----GCILESRNEPCLFRIKSVLGD---------DYKIKVWNYKQRKCIFTL 117
V + C L E + + GD D ++VW+ + + L
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245
Query: 118 -------LGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRN------------CICV 158
GH D + + F + ++S S D+++++W Q+ N C
Sbjct: 246 DSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 305
Query: 159 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWD 191
GH +V+ D+ ++S S D+ + WD
Sbjct: 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 70/189 (37%), Gaps = 44/189 (23%)
Query: 32 VIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMAYQGCILESRNEPCLF 91
+++WD L+E+ D G +F G+ +V G +
Sbjct: 230 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV---SGSL---------- 276
Query: 92 RIKSVLGDDYKIKVWNYKQRK------------CIFTLLGHLDYIRTTFFHHEYPWILSA 139
D +K+WN + C T +GH D++ + +ILS
Sbjct: 277 --------DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSG 328
Query: 140 SDDQTIRIWYWQSRNCICVLTGHNHYVMC------AQFHPTDDIVVSASLDQTIRVWDIS 193
S D+ + W +S N + +L GH + V+ + P ++ + S D R+W
Sbjct: 329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW--- 385
Query: 194 GLRKKNVAP 202
+ K +AP
Sbjct: 386 --KYKKIAP 392
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 27/207 (13%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG-------------G 70
I+S L + I++WD H G V +C + + ++G G
Sbjct: 146 IVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTG 203
Query: 71 KMIVMAYQGC--ILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIF---TLLGHLDYIR 125
+M+ C +L R + S D I VW+ I L+GH +
Sbjct: 204 EMLNTLIHHCEAVLHLRFNNGMMVTCS---KDRSIAVWDMASPTDITLRRVLVGHRAAVN 260
Query: 126 TTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQ 185
F +Y I+SAS D+TI++W + + L GH + C Q+ D +VVS S D
Sbjct: 261 VVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDN 316
Query: 186 TIRVWDISGLRKKNVAPGMGKLVLSMK 212
TIR+WDI V G +LV ++
Sbjct: 317 TIRLWDIECGACLRVLEGHEELVRCIR 343
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 31/189 (16%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMAYQGCILE 83
I++ + +++WD +L H V + F+N + S + I +
Sbjct: 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMA---- 241
Query: 84 SRNEPCLFRIKSVL--------------------GDDYKIKVWNYKQRKCIFTLLGHLDY 123
P ++ VL D IKVWN + + TL GH
Sbjct: 242 ---SPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 298
Query: 124 IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL 183
I + ++S S D TIR+W + C+ VL GH V C +F + +VS +
Sbjct: 299 IACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAY 354
Query: 184 DQTIRVWDI 192
D I+VWD+
Sbjct: 355 DGKIKVWDL 363
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 26/181 (14%)
Query: 33 IQLWDYRMNT---LLEKFDEHEGPVRGICFHNQQPIFVSGGKMI-VMAYQGCIL------ 82
I +WD T L H V + F ++ + SG + I V C
Sbjct: 235 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294
Query: 83 ESRNEPCL-FRIKSVLG--DDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSA 139
R CL +R + V+ D I++W+ + C+ L GH + +R F ++ I+S
Sbjct: 295 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSG 352
Query: 140 SDDQTIRIWYW---------QSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 190
+ D I++W C+ L H+ V QF +VS+S D TI +W
Sbjct: 353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 410
Query: 191 D 191
D
Sbjct: 411 D 411
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 52/135 (38%), Gaps = 43/135 (31%)
Query: 24 ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMAYQGCILE 83
++S + I+LWD L + HE VR I F N++ VSG AY G
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR--IVSG------AYDG---- 356
Query: 84 SRNEPCLFRIKSVLGDDYKIKVWNY---------KQRKCIFTLLGHLDYI-RTTFFHHEY 133
KIKVW+ C+ TL+ H + R F +
Sbjct: 357 ------------------KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ- 397
Query: 134 PWILSASDDQTIRIW 148
I+S+S D TI IW
Sbjct: 398 --IVSSSHDDTILIW 410
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D+ +++WN + +C + LGH + + F + I+S D +R+W + C+ L
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE-CMHTL 146
Query: 160 T--GHNHYVMCAQFHPTDD--IVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMK 212
+ H +V C +F P+ D ++VS D ++VWD++ G+LV +K
Sbjct: 147 SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA----------TGRLVTDLK 193
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 44/228 (19%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+ E SA V ++ + +S+ + ++LW+ + KF H V + F
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 64 PIFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLL--GHL 121
VSGG+ D ++VWN K +C+ TL H
Sbjct: 122 RQIVSGGR----------------------------DNALRVWNVKG-ECMHTLSRGAHT 152
Query: 122 DYIRTTFFHH--EYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 179
D++ F + P I+S D +++W + + L GH +YV P +
Sbjct: 153 DWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCA 212
Query: 180 SASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSKHPIWKYC-KPVKY 226
S+ D R+WD++ G+ + M + PI + C P +Y
Sbjct: 213 SSDKDGVARLWDLT----------KGEALSEMAAGAPINQICFSPNRY 250
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL--SASDDQTIRIWYWQSRNCIC 157
D K+K+W+ K + T H + + F ++ +L + S+D +++W + C
Sbjct: 685 DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 744
Query: 158 VLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKK 198
+ GH + V +F P D+++ S S D T+R+WD+ ++
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 26/139 (18%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVM 75
+F +I + + +++WD L+ +DEH V C H F + +++
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN--CCH-----FTNKSNHLLL 723
Query: 76 AYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPW 135
A +D+ +K+W+ Q++C T+ GH + + F +
Sbjct: 724 ATGS-------------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 764
Query: 136 ILSASDDQTIRIWYWQSRN 154
+ S S D T+R+W +S N
Sbjct: 765 LASCSADGTLRLWDVRSAN 783
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 101 YKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 148
Y +++WN R + GHL ++ F + L+ASDDQTIR+W
Sbjct: 869 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 916
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 27/198 (13%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRM----NTLLEK------FDEHEGPVRGICFHN 61
V G+ F P L++ + I++W+ + + ++ K F E+E V + N
Sbjct: 892 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV--DN 949
Query: 62 QQPIFVSGGKMIVMAY------QGCILESRNEPCLFRIKSVLGD-DYKIKVWNYKQRKCI 114
+ + + GK + Y C L E F GD D IK+ +
Sbjct: 950 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF------GDEDGAIKIIELPNNRVF 1003
Query: 115 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPT 174
+ +GH +R F + ++S+S+D I++W WQ+ + + L H V +
Sbjct: 1004 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL-LQ 1061
Query: 175 DDIVVSASLDQTIRVWDI 192
D ++S S D T++VW++
Sbjct: 1062 DSRLLSWSFDGTVKVWNV 1079
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 20/200 (10%)
Query: 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS- 68
A+V P ++ +G I++ + N + H+ VR I F +S
Sbjct: 969 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1028
Query: 69 -------------GGKMIVMAYQGCILESRNEPCLFRIKSVLG--DDYKIKVWNYKQRKC 113
G + + A+Q + + R L + +L D +KVWN +
Sbjct: 1029 SEDSVIQVWNWQTGDYVFLQAHQETVKDFR----LLQDSRLLSWSFDGTVKVWNVITGRI 1084
Query: 114 IFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHP 173
H + + + S S D+T +IW + + + L GHN V C+ F
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1144
Query: 174 TDDIVVSASLDQTIRVWDIS 193
++ + + IR+W++S
Sbjct: 1145 DGILLATGDDNGEIRIWNVS 1164
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 120 HLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 179
H D + F + I S D+T++++ ++ + + H V+C F D +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 180 SASLDQTIRVWD 191
+ S D+ +++WD
Sbjct: 681 TCSADKKVKIWD 692
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 74/191 (38%), Gaps = 29/191 (15%)
Query: 17 FHPKRPWILSSLHNGVIQLWDYRMNTLLEK------FDEHEGPVRGICFHNQQPIFVSGG 70
F P + S +G ++LWD R + F E P + + + + G
Sbjct: 758 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 817
Query: 71 KMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQ-RKCIFTLLGHLDYIRTTFF 129
I++A ++N+ LF I + G +I ++ + C F+ HL I + +
Sbjct: 818 DKIIVA-------AKNKVLLFDIHTS-GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY 869
Query: 130 HHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 189
+ +W SR + GH +V F P ++AS DQTIRV
Sbjct: 870 --------------CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 915
Query: 190 WDISGLRKKNV 200
W+ + K +
Sbjct: 916 WETKKVCKNSA 926
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL--SASDDQTIRIWYWQSRNCIC 157
D K+K+W+ K + T H + + F ++ +L + S+D +++W + C
Sbjct: 678 DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737
Query: 158 VLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKK 198
+ GH + V +F P D+++ S S D T+R+WD+ ++
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 26/139 (18%)
Query: 16 SFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVM 75
+F +I + + +++WD L+ +DEH V C H F + +++
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVN--CCH-----FTNKSNHLLL 716
Query: 76 AYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPW 135
A +D+ +K+W+ Q++C T+ GH + + F +
Sbjct: 717 ATGS-------------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757
Query: 136 ILSASDDQTIRIWYWQSRN 154
+ S S D T+R+W +S N
Sbjct: 758 LASCSADGTLRLWDVRSAN 776
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 101 YKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 148
Y +++WN R + GHL ++ F + L+ASDDQTIR+W
Sbjct: 862 YCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW 909
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 27/198 (13%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRM----NTLLEK------FDEHEGPVRGICFHN 61
V G+ F P L++ + I++W+ + + ++ K F E+E V + N
Sbjct: 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAV--DN 942
Query: 62 QQPIFVSGGKMIVMAY------QGCILESRNEPCLFRIKSVLGD-DYKIKVWNYKQRKCI 114
+ + + GK + Y C L E F GD D IK+ +
Sbjct: 943 IRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAF------GDEDGAIKIIELPNNRVF 996
Query: 115 FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPT 174
+ +GH +R F + ++S+S+D I++W WQ+ + + L H V +
Sbjct: 997 SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL-LQ 1054
Query: 175 DDIVVSASLDQTIRVWDI 192
D ++S S D T++VW++
Sbjct: 1055 DSRLLSWSFDGTVKVWNV 1072
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 76/200 (38%), Gaps = 20/200 (10%)
Query: 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS- 68
A+V P ++ +G I++ + N + H+ VR I F +S
Sbjct: 962 AQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISS 1021
Query: 69 -------------GGKMIVMAYQGCILESRNEPCLFRIKSVLG--DDYKIKVWNYKQRKC 113
G + + A+Q + + R L + +L D +KVWN +
Sbjct: 1022 SEDSVIQVWNWQTGDYVFLQAHQETVKDFR----LLQDSRLLSWSFDGTVKVWNVITGRI 1077
Query: 114 IFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHP 173
H + + + S S D+T +IW + + + L GHN V C+ F
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL 1137
Query: 174 TDDIVVSASLDQTIRVWDIS 193
++ + + IR+W++S
Sbjct: 1138 DGILLATGDDNGEIRIWNVS 1157
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 120 HLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 179
H D + F + I S D+T++++ ++ + + H V+C F D +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 180 SASLDQTIRVWD 191
+ S D+ +++WD
Sbjct: 674 TCSADKKVKIWD 685
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 71/182 (39%), Gaps = 29/182 (15%)
Query: 17 FHPKRPWILSSLHNGVIQLWDYRMNTLLEK------FDEHEGPVRGICFHNQQPIFVSGG 70
F P + S +G ++LWD R + F E P + + + + G
Sbjct: 751 FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADG 810
Query: 71 KMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQ-RKCIFTLLGHLDYIRTTFF 129
I++A ++N+ LF I + G +I ++ + C F+ HL I + +
Sbjct: 811 DKIIVA-------AKNKVLLFDIHTS-GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQY 862
Query: 130 HHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 189
+ +W SR + GH +V F P ++AS DQTIRV
Sbjct: 863 --------------CVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRV 908
Query: 190 WD 191
W+
Sbjct: 909 WE 910
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 103 IKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGH 162
I V+ ++ L+GH I F+ +LSASDD T+RIW+ + N GH
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH 288
Query: 163 NHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
+ ++ A + DD V+S S+D ++R+W +
Sbjct: 289 SQSIVSASW-VGDDKVISCSMDGSVRLWSL 317
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 159 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSKHPIW 218
L GH+ + +F+ T+ +++SAS D T+R+W +N G + ++S W
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSAS-----W 297
Query: 219 KYCKPVKYCNPKHTLHICNRKMEPL 243
V C+ ++ + + K L
Sbjct: 298 VGDDKVISCSMDGSVRLWSLKQNTL 322
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 7/110 (6%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D ++++W+ +GH + + F + I+SAS D+TI++W C +
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGECKYTI 509
Query: 160 T----GHNHYVMCAQFHPT--DDIVVSASLDQTIRVWDISGLRKKNVAPG 203
+ GH +V C +F P +VSAS D+T++VW++S + ++ G
Sbjct: 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG 559
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 35/179 (19%)
Query: 25 LSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMAYQGCILES 84
LS +G ++LWD +F H V + F VS +
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR------------- 492
Query: 85 RNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLL----GHLDYIRTTFFHHE--YPWILS 138
D IK+WN +C +T+ GH D++ F P I+S
Sbjct: 493 ---------------DRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS 536
Query: 139 ASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRK 197
AS D+T+++W + L GH YV P + S D + +WD++ +K
Sbjct: 537 ASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 104 KVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHN 163
K + QR+ L GH ++ + + LS S D +R+W + GH
Sbjct: 417 KAYGVAQRR----LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHT 472
Query: 164 HYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPG 203
V+ F + +VSAS D+TI++W+ G K ++ G
Sbjct: 473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG 512
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 136 ILSASDDQTIRIWYWQSRN-----CICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 190
I+SAS D++I +W + LTGH+H+V +S S D +R+W
Sbjct: 398 IVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLW 457
Query: 191 DISGLRKKNVAPGMGKLVLSM 211
D++ G K VLS+
Sbjct: 458 DLAAGVSTRRFVGHTKDVLSV 478
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 37/195 (18%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLW--------DYRMNTLLEKFDEHEGPVRGICFHNQQ 63
++ +++ P + + + + +W + M+ LL + HE V+G+ + N
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD-LLAIIEGHENEVKGVAWSNDG 119
Query: 64 PIFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDY 123
+ C SR++ G++Y+ CI L H
Sbjct: 120 YYLAT-----------C---SRDKSVWIWETDESGEEYE----------CISVLQEHSQD 155
Query: 124 IRTTFFHHEYPWILSASDDQTIRIW--YWQSRNCICVLTGHNHYVMCAQFHPTDDI--VV 179
++ +H + S+S D T+RIW Y C+ VL GH V + F T+ + +
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215
Query: 180 SASLDQTIRVWDISG 194
S S D T+RVW G
Sbjct: 216 SGSDDSTVRVWKYMG 230
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 35/196 (17%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
+ +SG + D IKVW K + C+ TLLGH D++
Sbjct: 121 MIISGSR----------------------------DKTIKVWTIKGQ-CLATLLGHNDWV 151
Query: 125 RTTFF------HHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIV 178
+ I+SA +D+ ++ W GHN + P ++
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 179 VSASLDQTIRVWDISG 194
SA D I +W+++
Sbjct: 212 ASAGKDGEIMLWNLAA 227
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 81 ILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS 140
+L + + L K + GDD K V + + GH ++ + + LSAS
Sbjct: 33 LLSASRDKTLISWK-LTGDDQKFGV-------PVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 141 DDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 194
D+T+R+W + GH VM +++S S D+TI+VW I G
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 35/195 (17%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
+ +SG + D IKVW K + C+ TLLGH D++
Sbjct: 121 MIISGSR----------------------------DKTIKVWTIKGQ-CLATLLGHNDWV 151
Query: 125 RTTFF------HHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIV 178
+ I+SA +D+ ++ W GHN + P ++
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 179 VSASLDQTIRVWDIS 193
SA D I +W+++
Sbjct: 212 ASAGKDGEIMLWNLA 226
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 81 ILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS 140
+L + + L K + GDD K V + + GH ++ + + LSAS
Sbjct: 33 LLSASRDKTLISWK-LTGDDQKFGV-------PVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 141 DDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 194
D+T+R+W + GH VM +++S S D+TI+VW I G
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 35/196 (17%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 64 PIFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDY 123
+ +SG + D IKVW K + C+ TLLGH D+
Sbjct: 120 SMIISGSR----------------------------DKTIKVWTIKGQ-CLATLLGHNDW 150
Query: 124 IRTTFF------HHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ + I+SA +D+ ++ W GHN + P +
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTL 210
Query: 178 VVSASLDQTIRVWDIS 193
+ SA D I +W+++
Sbjct: 211 IASAGKDGEIMLWNLA 226
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 81 ILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS 140
+L + + L K + GDD K V + + GH ++ + + LSAS
Sbjct: 33 LLSASRDKTLISWK-LTGDDQKFGV-------PVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 141 DDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 194
D+T+R+W + GH VM +++S S D+TI+VW I G
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 35/196 (17%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 114
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
+ +SG + D IKVW K + C+ TLLGH D++
Sbjct: 115 MIISGSR----------------------------DKTIKVWTIKGQ-CLATLLGHNDWV 145
Query: 125 RTTFF------HHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIV 178
+ I+SA +D+ ++ W GHN + P ++
Sbjct: 146 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 205
Query: 179 VSASLDQTIRVWDISG 194
SA D I +W+++
Sbjct: 206 ASAGKDGEIMLWNLAA 221
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 81 ILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS 140
+L + + L K + GDD K V + + GH ++ + + LSAS
Sbjct: 27 LLSASRDKTLISWK-LTGDDQKFGV-------PVRSFKGHSHIVQDCTLTADGAYALSAS 78
Query: 141 DDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 194
D+T+R+W + GH VM +++S S D+TI+VW I G
Sbjct: 79 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 132
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 35/196 (17%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS 120
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
+ +SG + D IKVW K + C+ TLLGH D++
Sbjct: 121 MIISGSR----------------------------DKTIKVWTIKGQ-CLATLLGHNDWV 151
Query: 125 RTTFF------HHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIV 178
+ I+SA +D+ ++ W GHN + P ++
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 179 VSASLDQTIRVWDISG 194
SA D I +W+++
Sbjct: 212 ASAGKDGEIMLWNLAA 227
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 8/114 (7%)
Query: 81 ILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS 140
+L + + L K + GDD K V + + GH ++ + + LSAS
Sbjct: 33 LLSASRDKTLISWK-LTGDDQKFGV-------PVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 141 DDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 194
D+T+R+W + GH VM +++S S D+TI+VW I G
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWIL--SASDDQTIRIWYWQSRNCIC 157
D K+K+WN + + T H + + F + +L + S D +++W + C
Sbjct: 684 DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRN 743
Query: 158 VLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKK 198
+ GH + V +F P D ++ S S D T+++WD + ++
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANER 784
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 12/196 (6%)
Query: 10 ARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSG 69
A+V P +I NG I++ + N + + +H+ V I F + +S
Sbjct: 968 AQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISS 1027
Query: 70 ---GKMIVMAYQ--GCIL-----ESRNEPCLFRIKSVLG--DDYKIKVWNYKQRKCIFTL 117
++ V +Q CI E+ + L + +L D +KVWN
Sbjct: 1028 SDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDF 1087
Query: 118 LGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
+ H + + H+ S S D+T +IW + + L GHN V C+ F +
Sbjct: 1088 VCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTL 1147
Query: 178 VVSASLDQTIRVWDIS 193
+ + + IR+W++S
Sbjct: 1148 LATGDDNGEIRIWNVS 1163
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 101 YKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW 148
Y +++WN R + GHL ++ F + L++SDDQTIR+W
Sbjct: 868 YCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLW 915
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 26/122 (21%)
Query: 33 IQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMAYQGCILESRNEPCLFR 92
+++W+ L+ +DEH V C H F + +++A + + C
Sbjct: 687 VKIWNSMTGELVHTYDEHSEQVN--CCH-----FTNSSHHLLLA-------TGSSDCF-- 730
Query: 93 IKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQS 152
+K+W+ Q++C T+ GH + + F + + S S D T+++W S
Sbjct: 731 ----------LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Query: 153 RN 154
N
Sbjct: 781 AN 782
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/72 (20%), Positives = 35/72 (48%)
Query: 120 HLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVV 179
H D + F + I S D+T++++ ++ + + H V+C F D +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 180 SASLDQTIRVWD 191
+ S+D+ +++W+
Sbjct: 680 TCSVDKKVKIWN 691
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 77 YQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWI 136
Y C E RI S G D ++V+ + + + + H D + F + +I
Sbjct: 625 YHACFSEDGQ-----RIASC-GADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFI 678
Query: 137 LSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD--IVVSASLDQTIRVWDISG 194
+ S D+ ++IW + + H+ V C F + ++ + S D +++WD++
Sbjct: 679 ATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQ 738
Query: 195 LRKKNVAPG 203
+N G
Sbjct: 739 KECRNTMFG 747
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 119 GHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIV 178
GH I+ F + + A + +W SR+ + GH +V F P
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 179 VSASLDQTIRVWDISGLRKKNV 200
+++S DQTIR+W+ + K +
Sbjct: 904 LTSSDDQTIRLWETKKVCKNSA 925
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 35/196 (17%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
F+ S V+ + + LS+ + ++LWD ++F H+ V + +
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKAS 120
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
+SG + D IKVW K + C+ TLLGH D++
Sbjct: 121 XIISGSR----------------------------DKTIKVWTIKGQ-CLATLLGHNDWV 151
Query: 125 RTTFF------HHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIV 178
+ I+SA +D+ ++ W GHN + P ++
Sbjct: 152 SQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLI 211
Query: 179 VSASLDQTIRVWDISG 194
SA D I +W+++
Sbjct: 212 ASAGKDGEIXLWNLAA 227
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 81 ILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSAS 140
+L + + L K + GDD K V + + GH ++ + + LSAS
Sbjct: 33 LLSASRDKTLISWK-LTGDDQKFGV-------PVRSFKGHSHIVQDCTLTADGAYALSAS 84
Query: 141 DDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISG 194
D+T+R+W + GH V ++S S D+TI+VW I G
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKG 138
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 116 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWYWQSRNC-----ICVLTGHNHYVMCA 169
TL GH ++ + P +LSAS D+T+ W + + GH+H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 170 QFHPTDDIVVSASLDQTIRVWDIS 193
+SAS D+T+R+WD++
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVA 95
>pdb|3MV2|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|C Chain C, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV2|E Chain E, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 325
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 70/159 (44%), Gaps = 1/159 (0%)
Query: 426 GSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPV-MAFPTRKGPGIKE 484
G+F+ A + L Q+GV P ++ F N Y RT + P P + + + E
Sbjct: 42 GAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSE 101
Query: 485 NSHPATNIKLEQLIAKIQQCYQLTTSGKFVDAIEKLRNVLISIPLLVVTTKKEIEEAKQI 544
+ L+ + K+ + Y+ K AIE R + I LL+V ++ + A +I
Sbjct: 102 DQILPYVPGLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKI 161
Query: 545 INICKEYIVGTNHIKYAIVNGDHGIIRTLDLPIYITKIK 583
+ +EYI+G + + +R L+L Y TK K
Sbjct: 162 LETAREYILGLSIELERRSLKEGNTVRMLELAAYFTKAK 200
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 32/186 (17%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 195 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 254
Query: 69 GGKMIVMAYQGCILESRNEPC-LFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTT 127
G S + C LF +++ D ++ +++ C T +
Sbjct: 255 G--------------SDDATCRLFDLRA----DQELMTYSHDNIICGIT---------SV 287
Query: 128 FFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD--IVVSASLDQ 185
F +L+ DD +W + VL GH++ V C TDD V + S D
Sbjct: 288 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC--LGVTDDGMAVATGSWDS 345
Query: 186 TIRVWD 191
+++W+
Sbjct: 346 FLKIWN 351
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 117 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD 176
L GH Y+ F + I+++S D T +W ++ TGH VM P
Sbjct: 150 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 208
Query: 177 IVVSASLDQTIRVWDI 192
+ VS + D + ++WD+
Sbjct: 209 LFVSGACDASAKLWDV 224
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 116 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD 175
TL GHL I + + ++SAS D + IW + N + + + +VM + P+
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 176 DIVVSASLDQTIRVWDISGLRKKNV 200
+ V LD ++++ R+ NV
Sbjct: 121 NYVACGGLDNICSIYNLK-TREGNV 144
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 32/186 (17%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 69 GGKMIVMAYQGCILESRNEPC-LFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTT 127
G S + C LF +++ D ++ +++ C T +
Sbjct: 244 G--------------SDDATCRLFDLRA----DQELMTYSHDNIICGIT---------SV 276
Query: 128 FFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD--IVVSASLDQ 185
F +L+ DD +W + VL GH++ V C TDD V + S D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC--LGVTDDGMAVATGSWDS 334
Query: 186 TIRVWD 191
+++W+
Sbjct: 335 FLKIWN 340
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 117 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD 176
L GH Y+ F + I+++S D T +W ++ TGH VM P
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 177 IVVSASLDQTIRVWDI 192
+ VS + D + ++WD+
Sbjct: 198 LFVSGACDASAKLWDV 213
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 116 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD 175
TL GHL I + + ++SAS D + IW + N + + + +VM + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 176 DIVVSASLDQTIRVWDISGLRKKNV 200
+ V LD ++++ R+ NV
Sbjct: 110 NYVACGGLDNICSIYNLK-TREGNV 133
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 32/186 (17%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 69 GGKMIVMAYQGCILESRNEPC-LFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTT 127
G S + C LF +++ D ++ +++ C T +
Sbjct: 244 G--------------SDDATCRLFDLRA----DQELMTYSHDNIICGIT---------SV 276
Query: 128 FFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD--IVVSASLDQ 185
F +L+ DD +W + VL GH++ V C TDD V + S D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC--LGVTDDGMAVATGSWDS 334
Query: 186 TIRVWD 191
+++W+
Sbjct: 335 FLKIWN 340
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 117 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD 176
L GH Y+ F + I+++S D T +W ++ TGH VM P
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 177 IVVSASLDQTIRVWDI 192
+ VS + D + ++WD+
Sbjct: 198 LFVSGACDASAKLWDV 213
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 116 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD 175
TL GHL I + + +LSAS D + IW + N + + + +VM + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 176 DIVVSASLDQTIRVWDISGLRKKNV 200
+ V LD ++++ R+ NV
Sbjct: 110 NYVACGGLDNICSIYNLK-TREGNV 133
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 32/186 (17%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 69 GGKMIVMAYQGCILESRNEPC-LFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTT 127
G S + C LF +++ D ++ +++ C T +
Sbjct: 244 G--------------SDDATCRLFDLRA----DQELMTYSHDNIICGIT---------SV 276
Query: 128 FFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD--IVVSASLDQ 185
F +L+ DD +W + VL GH++ V C TDD V + S D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC--LGVTDDGMAVATGSWDS 334
Query: 186 TIRVWD 191
+++W+
Sbjct: 335 FLKIWN 340
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 117 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD 176
L GH Y+ F + I+++S D T +W ++ TGH VM P
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 177 IVVSASLDQTIRVWDI 192
+ VS + D + ++WD+
Sbjct: 198 LFVSGACDASAKLWDV 213
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 116 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD 175
TL GHL I + + ++SAS D + IW + N + + + +VM + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 176 DIVVSASLDQTIRVWDISGLRKKNV 200
+ V LD ++++ R+ NV
Sbjct: 110 NYVACGGLDNICSIYNLK-TREGNV 133
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 32/186 (17%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVS 68
+ V LS P +S + +LWD R + F HE + ICF F +
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT 243
Query: 69 GGKMIVMAYQGCILESRNEPC-LFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTT 127
G S + C LF +++ D ++ +++ C T +
Sbjct: 244 G--------------SDDATCRLFDLRA----DQELMTYSHDNIICGIT---------SV 276
Query: 128 FFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD--IVVSASLDQ 185
F +L+ DD +W + VL GH++ V C TDD V + S D
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC--LGVTDDGMAVATGSWDS 334
Query: 186 TIRVWD 191
+++W+
Sbjct: 335 FLKIWN 340
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 117 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD 176
L GH Y+ F + I+++S D T +W ++ TGH VM P
Sbjct: 139 LAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 177 IVVSASLDQTIRVWDI 192
+ VS + D + ++WD+
Sbjct: 198 LFVSGACDASAKLWDV 213
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 116 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD 175
TL GHL I + + +LSAS D + IW + N + + + +VM + P+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 176 DIVVSASLDQTIRVWDISGLRKKNV 200
+ V LD ++++ R+ NV
Sbjct: 110 NYVACGGLDNICSIYNLK-TREGNV 133
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 13/89 (14%)
Query: 117 LLGHLDYIRTTFF------HHEYPWILSASDDQTIRIW--YWQSRNCIC-----VLTGHN 163
L GH D++ + + + P ++S S D+T+ IW Y + +N LTGHN
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 164 HYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
H+V + +S+S D+T+R+WD+
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDL 105
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 116 TLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD 175
L GH ++ E + +S+S D+T+R+W ++ GH V F P +
Sbjct: 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN 130
Query: 176 DIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSKHPIWKYC 221
++SA ++ I++W+I G K + A K H W C
Sbjct: 131 RQILSAGAEREIKLWNILGECKFSSAE---------KENHSDWVSC 167
>pdb|3MV3|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|C Chain C, Crystal Structure Of A-Cop In Complex With E-Cop
pdb|3MV3|E Chain E, Crystal Structure Of A-Cop In Complex With E-Cop
Length = 325
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 1/159 (0%)
Query: 426 GSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPV-MAFPTRKGPGIKE 484
G+F+ A + L Q+GV P ++ F N Y RT + P P + + + E
Sbjct: 42 GAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSE 101
Query: 485 NSHPATNIKLEQLIAKIQQCYQLTTSGKFVDAIEKLRNVLISIPLLVVTTKKEIEEAKQI 544
+ L+ + K + Y+ K AIE R + I LL V ++ + A +I
Sbjct: 102 DQILPYVPGLDVVNEKXNEGYKNFKLNKPDIAIECFREAIYRITLLXVDDAEDEKLAHKI 161
Query: 545 INICKEYIVGTNHIKYAIVNGDHGIIRTLDLPIYITKIK 583
+ +EYI+G + + +R L+L Y TK K
Sbjct: 162 LETAREYILGLSIELERRSLKEGNTVRXLELAAYFTKAK 200
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D +++W+ +GH + + F + I+S S D+TI++W + +C
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW---NTLGVCKY 163
Query: 160 T----GHNHYVMCAQFHP--TDDIVVSASLDQTIRVWDISGLRKK 198
T H+ +V C +F P ++ I+VS D+ ++VW+++ + K
Sbjct: 164 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 117 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD 176
L GH ++ + + LS S D T+R+W + GH V+ F +
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 177 IVVSASLDQTIRVWDISGLRKKNV 200
+VS S D+TI++W+ G+ K V
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTV 165
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 74/219 (33%), Gaps = 46/219 (21%)
Query: 25 LSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK---------MIVM 75
LS +G ++LWD T +F H V + F + VSG + + V
Sbjct: 102 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161
Query: 76 AYQ----------GCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIR 125
Y C+ S N + G D +KVWN K +GH Y+
Sbjct: 162 KYTVQDESHSEWVSCVRFSPNSSNPIIVS--CGWDKLVKVWNLANCKLKTNHIGHTGYLN 219
Query: 126 TTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGH----------NHYVMCAQFHPTD 175
T + S D +W + L G N Y +CA P
Sbjct: 220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGP-- 277
Query: 176 DIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSK 214
+I++WD+ G K + + + V+S SK
Sbjct: 278 ----------SIKIWDLEG---KIIVDELKQEVISTSSK 303
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 116 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWYWQSRNCIC------VLTGHNHYVMC 168
TL GH ++ ++P ILSAS D+TI +W +R+ L GH+H+V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK-LTRDETNYGIPQRALRGHSHFVSD 91
Query: 169 AQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSM 211
+S S D T+R+WD++ G K VLS+
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 134
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 100 DYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVL 159
D +++W+ +GH + + F + I+S S D+TI++W + +C
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLW---NTLGVCKY 140
Query: 160 T----GHNHYVMCAQFHP--TDDIVVSASLDQTIRVWDISGLRKK 198
T H+ +V C +F P ++ I+VS D+ ++VW+++ + K
Sbjct: 141 TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 117 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD 176
L GH ++ + + LS S D T+R+W + GH V+ F +
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 177 IVVSASLDQTIRVWDISGLRKKNV 200
+VS S D+TI++W+ G+ K V
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTV 142
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 74/219 (33%), Gaps = 46/219 (21%)
Query: 25 LSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGK---------MIVM 75
LS +G ++LWD T +F H V + F + VSG + + V
Sbjct: 79 LSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 138
Query: 76 AYQ----------GCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIR 125
Y C+ S N + G D +KVWN K +GH Y+
Sbjct: 139 KYTVQDESHSEWVSCVRFSPNSSNPIIVS--CGWDKLVKVWNLANCKLKTNHIGHTGYLN 196
Query: 126 TTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGH----------NHYVMCAQFHPTD 175
T + S D +W + L G N Y +CA P
Sbjct: 197 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGP-- 254
Query: 176 DIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSK 214
+I++WD+ G K + + + V+S SK
Sbjct: 255 ----------SIKIWDLEG---KIIVDELKQEVISTSSK 280
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 116 TLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWYWQSRNCIC------VLTGHNHYVMC 168
TL GH ++ ++P ILSAS D+TI +W +R+ L GH+H+V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWK-LTRDETNYGIPQRALRGHSHFVSD 68
Query: 169 AQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSM 211
+S S D T+R+WD++ G K VLS+
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSV 111
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 95 SVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWYWQSR 153
+V G I++ N +CI +GH + I FH P +LS S D +R+W Q+
Sbjct: 125 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 184
Query: 154 NCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 200
+ + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 185 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 234
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 133 YPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 191
+P + A IRI + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 121 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 180
Query: 192 I 192
I
Sbjct: 181 I 181
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 100 DYKIKVWNYKQR---KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCI 156
D + VW + +C+ L H ++ +H + SAS D T++++ + + +
Sbjct: 126 DKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV 185
Query: 157 CVLT--GHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSK 214
C T GH V F P+ + S S D+T+R+W + PG + V S
Sbjct: 186 CCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW-------RQYLPGNEQGVACSGSD 238
Query: 215 HPIWK 219
P WK
Sbjct: 239 -PSWK 242
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 100 DYKIKVWNYKQR--KCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRN--- 154
D +W Q +C+ TL GH + +++ + + + S D+++ +W +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 155 CICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRV 189
C+ VL H V +HP+ +++ SAS D T+++
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKL 176
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 98 GDDYKIKVWNYKQRKCIFTLL---GHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRN 154
G D +I++W + I + GH +R + ++ SAS D T IW +
Sbjct: 35 GGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD 94
Query: 155 --CICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI 192
C+ L GH + V + P+ +++ + S D+++ VW++
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEV 134
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 136 ILSASDDQTIRIWYWQSRNCIC--VLT-GHNHYVMCAQFHPTDDIVVSASLDQTIRVW 190
+ S D+ IRIW + + IC VL+ GH V + P + + SAS D T +W
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIW 88
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 95 SVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWYWQSR 153
+V G I++ N +CI +GH + I FH P +LS S D +R+W Q+
Sbjct: 84 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 143
Query: 154 NCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 200
+ + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 144 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 193
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 133 YPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 191
+P + A IRI + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 80 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 139
Query: 192 I 192
I
Sbjct: 140 I 140
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 95 SVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWYWQSR 153
+V G I++ N +CI +GH + I FH P +LS S D +R+W Q+
Sbjct: 88 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 154 NCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 200
+ + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 148 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 197
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 133 YPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 191
+P + A IRI + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 84 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 143
Query: 192 I 192
I
Sbjct: 144 I 144
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 95 SVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWYWQSR 153
+V G I++ N +CI +GH + I FH P +LS S D +R+W Q+
Sbjct: 89 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 148
Query: 154 NCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 200
+ + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 198
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 133 YPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 191
+P + A IRI + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144
Query: 192 I 192
I
Sbjct: 145 I 145
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 95 SVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYP-WILSASDDQTIRIWYWQSR 153
+V G I++ N +CI +GH + I FH P +LS S D +R+W Q+
Sbjct: 88 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 154 NCICV---LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNV 200
+ + + GH V+ A + + ++S +D ++++W I+ R N
Sbjct: 148 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 197
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 133 YPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQTIRVWD 191
+P + A IRI + CI GH + + +FHP D ++++S S D +R+W+
Sbjct: 84 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 143
Query: 192 I 192
I
Sbjct: 144 I 144
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 22 PWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRG--ICFHNQQPIFVSG---GKMIVMA 76
P SS + I+LWD ++ D GPV + F +G GK+ +
Sbjct: 93 PIAASSSLDAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPDSQYLATGTHVGKVNIFG 150
Query: 77 YQGC----ILESRNEPCLFRIKSVLGD-------DYKIKVWNYKQRKCIFTLLGHLDYIR 125
+ L++R + L S G D I +++ K + TL GH IR
Sbjct: 151 VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR 210
Query: 126 TTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQ 185
+ F + +++ASDD I+I+ Q N L+GH +V+ F P D VS+S D+
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDK 270
Query: 186 TIRVWDIS 193
+++VWD+
Sbjct: 271 SVKVWDVG 278
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/188 (19%), Positives = 75/188 (39%), Gaps = 28/188 (14%)
Query: 4 KFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQ 63
+T+ + +++ P ++ S +G+I ++D LL + H P+R + F
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS 218
Query: 64 PIFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDY 123
+ V+ DD IK+++ + TL GH +
Sbjct: 219 QLLVTA----------------------------SDDGYIKIYDVQHANLAGTLSGHASW 250
Query: 124 IRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASL 183
+ F + +S+S D+++++W +R C+ H V +++ +VS
Sbjct: 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGD 310
Query: 184 DQTIRVWD 191
DQ I ++D
Sbjct: 311 DQEIHIYD 318
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 136 ILSASDDQTIRIWYWQSR--NCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDI- 192
+++ S D +++W W+ + L GH V+ T I S+SLD IR+WD+
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 193 SGLRKKNVAPG 203
+G + K++ G
Sbjct: 111 NGKQIKSIDAG 121
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 48/110 (43%)
Query: 102 KIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTG 161
K+ ++ + K ++L +I + + + ++ S + D I I+ + + L G
Sbjct: 145 KVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG 204
Query: 162 HNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSM 211
H + F P ++V+AS D I+++D+ G VL++
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 69/193 (35%), Gaps = 30/193 (15%)
Query: 1 MLTKFETKSARVKGLSFHPKRPW--ILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGIC 58
+L F A V L P +S + +WD R ++ F+ HE V +
Sbjct: 188 LLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVR 247
Query: 59 FHNQQPIFVSGGK-MIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTL 117
++ F SG Y L + E ++ +S++ + F+L
Sbjct: 248 YYPSGDAFASGSDDATCRLYD---LRADREVAIYSKESII----------FGASSVDFSL 294
Query: 118 LGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDI 177
G L + + +D TI +W + + +L GH + V + P
Sbjct: 295 SGRL--------------LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTA 340
Query: 178 VVSASLDQTIRVW 190
S S D T+RVW
Sbjct: 341 FCSGSWDHTLRVW 353
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 120 HLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHP--TDDI 177
H +Y+ F + IL+AS D T +W +S + GH V+C P T +
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 178 VVSASLDQTIRVWDI 192
VS D+ VWD+
Sbjct: 213 FVSGGCDKKAMVWDM 227
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 66/187 (35%), Gaps = 36/187 (19%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFH----NQQPIFV 67
+ SF IL++ +G LWD LL+ F H V +C FV
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV--LCLDLAPSETGNTFV 214
Query: 68 SGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTT 127
SGG C D K VW+ + +C+ H + +
Sbjct: 215 SGG------------------C----------DKKAMVWDMRSGQCVQAFETHESDVNSV 246
Query: 128 FFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHN--HYVMCAQFHPTDDIVVSASLDQ 185
++ S SDD T R++ ++ + + + + F + ++ + D
Sbjct: 247 RYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDY 306
Query: 186 TIRVWDI 192
TI VWD+
Sbjct: 307 TINVWDV 313
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 136 ILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGL 195
+S D+ +W +S C+ H V +++P+ D S S D T R++D+
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272
Query: 196 RK 197
R+
Sbjct: 273 RE 274
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 36/190 (18%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN----TLLEKFDEHEGPVRGICFHN-QQ 63
S V GL + P + S ++ ++ +W L+ F +H+G V+ + + Q
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 300
Query: 64 PIFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDY 123
+ +GG D I++WN C+ + H
Sbjct: 301 NVLATGGGT--------------------------SDRHIRIWNVCSGACLSAVDAHSQV 334
Query: 124 IRTTFFHHEYPWILSA---SDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVS 180
+ H Y ++S + +Q + IW + + + L GH V+ P V S
Sbjct: 335 CSILWSPH-YKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 392
Query: 181 ASLDQTIRVW 190
A+ D+T+R+W
Sbjct: 393 AAADETLRLW 402
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 99 DDYKIKVWNYK---------QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDDQTIRI 147
DD+ I +W+ K IFT GH + +H HE S +DDQ + I
Sbjct: 198 DDHTICLWDISAVPKEGKVVDAKTIFT--GHTAVVEDVSWHLLHES-LFGSVADDQKLMI 254
Query: 148 WYWQSRNCIC---VLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDISGLRKK 198
W +S N + H V C F+P ++ I+ + S D+T+ +WD+ L+ K
Sbjct: 255 WDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 309
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 97 LGDDYKIKVWNYKQR---KCIFTLLGHLDYIRTTFFHHEYPWILS-ASDDQTIRIWYWQS 152
+ DD K+ +W+ + K ++ H + F+ +IL+ S D+T+ +W
Sbjct: 246 VADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW--DL 303
Query: 153 RNCICVL---TGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKK 198
RN L H + Q+ P ++ I+ S+ D+ + VWD+S + ++
Sbjct: 304 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEE 353
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 72/190 (37%), Gaps = 36/190 (18%)
Query: 9 SARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN----TLLEKFDEHEGPVRGICFHN-QQ 63
S V GL + P + S ++ ++ +W L+ F +H+G V+ + + Q
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 289
Query: 64 PIFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDY 123
+ +GG D I++WN C+ + H
Sbjct: 290 NVLATGGGT--------------------------SDRHIRIWNVCSGACLSAVDAHSQV 323
Query: 124 IRTTFFHHEYPWILSA---SDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVS 180
+ H Y ++S + +Q + IW + + + L GH V+ P V S
Sbjct: 324 CSILWSPH-YKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 381
Query: 181 ASLDQTIRVW 190
A+ D+T+R+W
Sbjct: 382 AAADETLRLW 391
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 99 DDYKIKVWNYK---------QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDDQTIRI 147
DD+ I +W+ K IFT GH + +H HE S +DDQ + I
Sbjct: 204 DDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHE-SLFGSVADDQKLMI 260
Query: 148 WYWQSRNCIC---VLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDISGLRKK 198
W ++ N + H V C F+P ++ I+ + S D+T+ +WD+ L+ K
Sbjct: 261 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 315
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 97 LGDDYKIKVW---NYKQRKCIFTLLGHLDYIRTTFFHHEYPWILS-ASDDQTIRIWYWQS 152
+ DD K+ +W N K T+ H + F+ +IL+ S D+T+ +W
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW--DL 309
Query: 153 RNC---ICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKK 198
RN + H + Q+ P ++ I+ S+ D+ + VWD+S + ++
Sbjct: 310 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 359
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 99 DDYKIKVWNYK---------QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDDQTIRI 147
DD+ I +W+ K IFT GH + +H HE S +DDQ + I
Sbjct: 202 DDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHE-SLFGSVADDQKLMI 258
Query: 148 WYWQSRNCIC---VLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDISGLRKK 198
W ++ N + H V C F+P ++ I+ + S D+T+ +WD+ L+ K
Sbjct: 259 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 97 LGDDYKIKVW---NYKQRKCIFTLLGHLDYIRTTFFHHEYPWILS-ASDDQTIRIWYWQS 152
+ DD K+ +W N K T+ H + F+ +IL+ S D+T+ +W
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW--DL 307
Query: 153 RNC---ICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKK 198
RN + H + Q+ P ++ I+ S+ D+ + VWD+S + ++
Sbjct: 308 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 357
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 99 DDYKIKVWNYK---------QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDDQTIRI 147
DD+ I +W+ K IFT GH + +H HE S +DDQ + I
Sbjct: 206 DDHTICLWDINATPKEHRVIDAKNIFT--GHTAVVEDVAWHLLHE-SLFGSVADDQKLMI 262
Query: 148 WYWQSRNCIC---VLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDISGLRKK 198
W ++ N + H V C F+P ++ I+ + S D+T+ +WD+ L+ K
Sbjct: 263 WDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 317
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 97 LGDDYKIKVW---NYKQRKCIFTLLGHLDYIRTTFFHHEYPWILS-ASDDQTIRIWYWQS 152
+ DD K+ +W N K T+ H + F+ +IL+ S D+T+ +W
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW--DL 311
Query: 153 RNC---ICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKK 198
RN + H + Q+ P ++ I+ S+ D+ + VWD+S + ++
Sbjct: 312 RNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE 361
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 74/197 (37%), Gaps = 36/197 (18%)
Query: 2 LTKFETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMN----TLLEKFDEHEGPVRGI 57
+ S V GL + P + S ++ ++ +W L+ F +H+G V+ +
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 202
Query: 58 CFHNQQP-IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFT 116
+ Q + +GG D I++WN C+
Sbjct: 203 AWCPWQSNVLATGGGT--------------------------SDRHIRIWNVCSGACLSA 236
Query: 117 LLGHLDYIRTTFFHHEYPWILSA---SDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHP 173
+ H + + + Y ++S + +Q + IW + + + L GH V+ P
Sbjct: 237 VDAH-SQVCSILWSPHYKELISGHGFAQNQLV-IWKYPTMAKVAELKGHTSRVLSLTMSP 294
Query: 174 TDDIVVSASLDQTIRVW 190
V SA+ D+T+R+W
Sbjct: 295 DGATVASAAADETLRLW 311
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 99 DDYKIKVWNYK---------QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDDQTIRI 147
DD+ + +W+ K IFT GH + +H HE S +DDQ + I
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHE-SLFGSVADDQKLXI 256
Query: 148 WYWQSRNCIC---VLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDISGLRKK 198
W +S ++ H V C F+P ++ I+ + S D+T+ +WD+ L+ K
Sbjct: 257 WDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 97 LGDDYKIKVWNYKQR---KCIFTLLGHLDYIRTTFFHHEYPWILS-ASDDQTIRIWYWQS 152
+ DD K+ +W+ + K + H + F+ +IL+ S D+T+ +W
Sbjct: 248 VADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW--DL 305
Query: 153 RNC---ICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKKNVA 201
RN + H + + P ++ I+ S+ D+ + VWD+S + ++ A
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 18/115 (15%)
Query: 99 DDYKIKVWNYK---------QRKCIFTLLGHLDYIRTTFFH--HEYPWILSASDDQTIRI 147
DD+ + +W+ K IFT GH + +H HE S +DDQ + I
Sbjct: 200 DDHTVCLWDINAGPKEGKIVDAKAIFT--GHSAVVEDVAWHLLHE-SLFGSVADDQKLMI 256
Query: 148 WYWQSRNCIC---VLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWDISGLRKK 198
W +S ++ H V C F+P ++ I+ + S D+T+ +WD+ L+ K
Sbjct: 257 WDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 311
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 10/113 (8%)
Query: 97 LGDDYKIKVWNYKQR---KCIFTLLGHLDYIRTTFFHHEYPWILS-ASDDQTIRIWYWQS 152
+ DD K+ +W+ + K + H + F+ +IL+ S D+T+ +W
Sbjct: 248 VADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW--DL 305
Query: 153 RNC---ICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWDISGLRKKNVA 201
RN + H + + P ++ I+ S+ D+ + VWD+S + ++ A
Sbjct: 306 RNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSA 358
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 100 DYKIKVWNYKQRKCIFTLLG-HLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICV 158
D IK+W + K I T G H D +R + +I S S+D I++ + + +
Sbjct: 164 DKTIKLW--QNDKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRT 220
Query: 159 LTGHNHYVMCAQFHPTDDIVVSASLDQTIRVW 190
GH +V C + P DI VS D+T+R+W
Sbjct: 221 YEGHESFVYCIKLLPNGDI-VSCGEDRTVRIW 251
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 10/101 (9%)
Query: 117 LLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD 176
L GH + ++ E + S S D + +WY + + L GH +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 177 IVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSKHPI 217
V+ S D +I++WD+S G+ V + KS P+
Sbjct: 88 YCVTGSADYSIKLWDVSN----------GQCVATWKSPVPV 118
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 10/152 (6%)
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
I G KM+ A + ++ + F + + GD K+ N+ ++ I H+ I
Sbjct: 83 IIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGD-IKVLDSNFNLQREIDQ--AHVSEI 139
Query: 125 RTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLD 184
F ++S+S D ++IW + + L GH V V+SASLD
Sbjct: 140 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 199
Query: 185 QTIRVWDI-SGL------RKKNVAPGMGKLVL 209
TIR+W+ +G RK+N G+ + L
Sbjct: 200 GTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 231
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 10/152 (6%)
Query: 65 IFVSGGKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYI 124
I G KM+ A + ++ + F + + GD K+ N+ ++ I H+ I
Sbjct: 86 IIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGD-IKVLDSNFNLQREIDQ--AHVSEI 142
Query: 125 RTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLD 184
F ++S+S D ++IW + + L GH V V+SASLD
Sbjct: 143 TKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD 202
Query: 185 QTIRVWDI-SGL------RKKNVAPGMGKLVL 209
TIR+W+ +G RK+N G+ + L
Sbjct: 203 GTIRLWECGTGTTIHTFNRKENPHDGVNSIAL 234
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 37/87 (42%)
Query: 113 CIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFH 172
C TL GH + + + E WI+SAS D + +W + + H +VM F
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 173 PTDDIVVSASLDQTIRVWDISGLRKKN 199
P V LD ++++S ++
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRD 144
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/196 (19%), Positives = 76/196 (38%), Gaps = 30/196 (15%)
Query: 5 FETKSARVKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQP 64
+ S +V L + P++ WI+S+ +G + +W+ + H C +
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLH-------CPWVMEC 114
Query: 65 IFVSGGKMIVMAYQGCILESRNEPC-LFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDY 123
F G+ + + C +F + S D + V L GH Y
Sbjct: 115 AFAPNGQSVACG-------GLDSACSIFNLSSQADRDGNMPV--------SRVLTGHKGY 159
Query: 124 IRTT-FFHHEYPWILSASDDQTIRIWYWQSRNCICVL-----TGHNHYVMCAQFHPTD-D 176
+ + + +++ S DQT +W + I + +GH V+ + + +
Sbjct: 160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNAN 219
Query: 177 IVVSASLDQTIRVWDI 192
+ +S S D T+R+WD+
Sbjct: 220 MFISGSCDTTVRLWDL 235
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 158 VLTGHNHYVMCAQFHPTDDI-VVSASLDQTIRVWDIS 193
VLTGH Y Q+ P + +++ S DQT +WD++
Sbjct: 152 VLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT 188
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 12 VKGLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFV 67
V G++FHP + + +G WD T L+ ++ + P+ CF++ IF
Sbjct: 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFA 331
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 175 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSKHPIWKYC 221
D + +AS+DQT+++WD+ +R G + S+ +HP+ C
Sbjct: 263 DWFLATASVDQTVKIWDLRQVR------GKASFLYSLPHRHPVNAAC 303
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 175 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSKHPIWKYC 221
D + +AS+DQT+++WD+ +R G + S+ +HP+ C
Sbjct: 263 DWFLATASVDQTVKIWDLRQVR------GKASFLYSLPHRHPVNAAC 303
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 175 DDIVVSASLDQTIRVWDISGLRKKNVAPGMGKLVLSMKSKHPIWKYC 221
D + +AS+DQT+++WD+ +R G + S+ +HP+ C
Sbjct: 264 DWFLATASVDQTVKIWDLRQVR------GKASFLYSLPHRHPVNAAC 304
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 96 VLGDDYKIKVWNYKQRKCI----FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQ 151
V D +++W + + + F H D + T +S S D I++W
Sbjct: 98 VASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157
Query: 152 SRNCICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRVWD 191
+ + H V C P D + +S S D I +WD
Sbjct: 158 QQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD 198
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 75/199 (37%), Gaps = 28/199 (14%)
Query: 31 GVIQLWDYRMNT--LLEKFDEHEGPVRGICFHNQQP----------------IFVSGGKM 72
G +++WD T L GPV+ I + ++ +F +G
Sbjct: 81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN 140
Query: 73 IVMAYQGCILESRN-EPCL-FRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFH 130
+ Q + S + +P FRI S DD + ++ K T H ++ + ++
Sbjct: 141 GNLTGQARAMNSVDFKPSRPFRIIS-GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 199
Query: 131 HEYPWILSASDDQTIRIWYWQSRNCICVL-------TGHNHYVMCAQFHPTDDIVVSASL 183
+ S D TI ++ V H+ V + P + SAS
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 259
Query: 184 DQTIRVWDISGLRKKNVAP 202
D+TI++W+++ L+ + P
Sbjct: 260 DKTIKIWNVATLKVEKTIP 278
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 40/198 (20%)
Query: 11 RVKGLSFHPKRPWILS-SLHNGVIQLWDYRMNTLLEKFDEHEGP---VRGICFH--NQQP 64
RV L +HP P ++ G I LWDY + F + GP + G+ F+ N
Sbjct: 75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQ 133
Query: 65 IFVSG--GKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLD 122
+FVS G + + G +++ +F K W+Y C+ +
Sbjct: 134 LFVSSIRGATTLRDFSGSVIQ------VFA---------KTDSWDY-WYCCVDVSVSRQ- 176
Query: 123 YIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD-IVVSA 181
+L+ D + + I H V A+F+P D ++ ++
Sbjct: 177 -------------MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATS 223
Query: 182 SLDQTIRVWDISGLRKKN 199
S+D T+++WD+ ++ KN
Sbjct: 224 SVDATVKLWDLRNIKDKN 241
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 79/198 (39%), Gaps = 40/198 (20%)
Query: 11 RVKGLSFHPKRPWILS-SLHNGVIQLWDYRMNTLLEKFDEHEGP---VRGICFH--NQQP 64
RV L +HP P ++ G I LWDY + F + GP + G+ F+ N
Sbjct: 74 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQ 132
Query: 65 IFVSG--GKMIVMAYQGCILESRNEPCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLD 122
+FVS G + + G +++ +F K W+Y C+ +
Sbjct: 133 LFVSSIRGATTLRDFSGSVIQ------VFA---------KTDSWDY-WYCCVDVSVSRQ- 175
Query: 123 YIRTTFFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDD-IVVSA 181
+L+ D + + I H V A+F+P D ++ ++
Sbjct: 176 -------------MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATS 222
Query: 182 SLDQTIRVWDISGLRKKN 199
S+D T+++WD+ ++ KN
Sbjct: 223 SVDATVKLWDLRNIKDKN 240
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 96 VLGDDYKIKVWNYKQRKCI----FTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIWYWQ 151
V D +++W +++ + F H D ++T + +S D ++++W
Sbjct: 110 VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169
Query: 152 SRNCICVLTGHNHYVMCAQFHPTDD-IVVSASLDQTIRVWD 191
+ + H+ V C P D I +S D I +WD
Sbjct: 170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 14/191 (7%)
Query: 14 GLSFHPKRPWILSSLHNGVIQLWDYRMNTLLEKFDEHEGPVR-GICFHNQQPIFVSGGKM 72
G +++ + + + NG I+L+D R L E ++ G+C +S K+
Sbjct: 173 GNAYNQEERVVCAGYDNGDIKLFDLRNMAL-----RWETNIKNGVCSLEFDRKDISMNKL 227
Query: 73 IVMAYQGC--ILESRNEPCLFRIKSVLGDDYKIKVWNYK---QRKCIFTLLGHLDYIRTT 127
+ + +G + + R + SV +K VW + Q + +F G +
Sbjct: 228 VATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLH-- 285
Query: 128 FFHHEYPWILSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTD-DIVVSASLDQT 186
+ +EYP S D + I + S + + +T + + P + V +S DQT
Sbjct: 286 LWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT 345
Query: 187 IRVWDISGLRK 197
+RV ++ L K
Sbjct: 346 VRVLIVTKLNK 356
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 162 HNHYVMCAQFHPTD-DIVVSASLDQTIRVWDISGLRKKNV 200
H + V Q++P D + S+S D+T++VWD + L+ +V
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV 137
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 497 LIAKIQQCYQLTTSGKFVDAIEKLRNVLISIPLLVVTTKKEIEEAKQI 544
L+ I + T + +F + I +++ IPLLVV K ++EE +Q+
Sbjct: 84 LVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV 131
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 497 LIAKIQQCYQLTTSGKFVDAIEKLRNVLISIPLLVVTTKKEIEEAKQI 544
L+ I + T + +F + I +++ IPLLVV K ++EE +Q+
Sbjct: 80 LVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQV 127
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 37 DYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMAY 77
DY + T ++KF E + PV GIC +Q SG K + M +
Sbjct: 249 DYAI-TAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKF 288
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 37 DYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMAY 77
DY + T ++KF E + PV GIC +Q SG K + M +
Sbjct: 249 DYAI-TAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKF 288
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 37 DYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMAY 77
DY + T ++KF E + PV GIC +Q SG K + M +
Sbjct: 249 DYAI-TAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKF 288
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%)
Query: 92 RIKSVLG--DDYKIKVWNYKQRKCIFTLL--GHLDYIRT-TFFHHEYPWILSASDDQTIR 146
R+ + G +D I +W+ + L GH I + + H + +LS+ D T+
Sbjct: 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288
Query: 147 IWYWQSRNCICVLTGHNHYVMCAQFHP-TDDIVVSASLDQTIRV 189
+W +S + ++ +F P D+ AS D I V
Sbjct: 289 LWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 105/294 (35%), Gaps = 69/294 (23%)
Query: 28 LHNGVIQLWDYRMNTLLEKFDEHEGPVRGICFHNQQPIFVSGGKMIVMAYQGCILESRNE 87
L NG++ ++D T L H+ V C + + SG + G I
Sbjct: 153 LGNGLVDIYDVESQTKLRTMAGHQARVG--CLSWNRHVLSSGSR------SGAIHH---- 200
Query: 88 PCLFRIKSVLGDDYKIKVWNYKQRKCIFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRI 147
+ +++ N++ I TL GH + + + + S +D ++I
Sbjct: 201 -------------HDVRIANHQ----IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQI 243
Query: 148 WYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVS---ASLDQTIRVWDIS-GLRKKNVAPG 203
W +S T HN V + P +++ ++D+ I W+ + G R V G
Sbjct: 244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG 303
Query: 204 --MGKLVLSMKSKH------------PIWKYCKP--VKYCN-PKHTLHICNRKMEPLCNI 246
+ L+ S SK IW Y K + P H + + P I
Sbjct: 304 SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRI 363
Query: 247 HENTRVKSGAWDESGVFIYTTSNHIKYAIVNGDHGIIRTLDLPIYITKIKGNQV 300
+ + A DE+ F + + +GDH + PI ITK + +
Sbjct: 364 -----LSTAASDENLKF---------WRVYDGDH-----VKRPIPITKTPSSSI 398
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 23/61 (37%)
Query: 137 LSASDDQTIRIWYWQSRNCICVLTGHNHYVMCAQFHPTDDIVVSASLDQTIRVWDISGLR 196
S D I +W ++ + GH C + + LD T+R WD+ R
Sbjct: 157 FSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR 216
Query: 197 K 197
+
Sbjct: 217 Q 217
>pdb|2E03|A Chain A, Crystal Structure Of Nq67e Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 569 IIRTLDLPIYITKIKGNQVY---YLDRECSPHVLRIDPTEFKFKLA---------LIN-- 614
I R + L + I ++ N+ + Y+D++ H ++ P EF K A LIN
Sbjct: 220 IFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP 279
Query: 615 -HKYEEVLHIVRNSRLVGQSIIAYL 638
H Y +++ I R ++G + YL
Sbjct: 280 RHPYGKLIKIDRLGNVLGGDAVIYL 304
>pdb|2E00|A Chain A, Crystal Structure Of N392l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 569 IIRTLDLPIYITKIKGNQVY---YLDRECSPHVLRIDPTEFKFKLA---------LIN-- 614
I R + L + I ++ N+ + Y+D++ H ++ P EF K A LIN
Sbjct: 220 IFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP 279
Query: 615 -HKYEEVLHIVRNSRLVGQSIIAYL 638
H Y +++ I R ++G + YL
Sbjct: 280 RHPYGKLIKIDRLGNVLGGDAVIYL 304
>pdb|3GCB|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73aDELTAK454
Length = 470
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 569 IIRTLDLPIYITKIKGNQVY---YLDRECSPHVLRIDPTEFKFKLA---------LIN-- 614
I R + L + I ++ N+ + Y+D++ H ++ P EF K A LIN
Sbjct: 233 IFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP 292
Query: 615 -HKYEEVLHIVRNSRLVGQSIIAYL 638
H Y +++ I R ++G + YL
Sbjct: 293 RHPYGKLIKIDRLGNVLGGDAVIYL 317
>pdb|2E02|A Chain A, Crystal Structure Of H369l Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 569 IIRTLDLPIYITKIKGNQVY---YLDRECSPHVLRIDPTEFKFKLA---------LIN-- 614
I R + L + I ++ N+ + Y+D++ H ++ P EF K A LIN
Sbjct: 220 IFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP 279
Query: 615 -HKYEEVLHIVRNSRLVGQSIIAYL 638
H Y +++ I R ++G + YL
Sbjct: 280 RHPYGKLIKIDRLGNVLGGDAVIYL 304
>pdb|2E01|A Chain A, Crystal Structure Of H369a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 569 IIRTLDLPIYITKIKGNQVY---YLDRECSPHVLRIDPTEFKFKLA---------LIN-- 614
I R + L + I ++ N+ + Y+D++ H ++ P EF K A LIN
Sbjct: 220 IFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP 279
Query: 615 -HKYEEVLHIVRNSRLVGQSIIAYL 638
H Y +++ I R ++G + YL
Sbjct: 280 RHPYGKLIKIDRLGNVLGGDAVIYL 304
>pdb|1A6R|A Chain A, Gal6 (Yeast Bleomycin Hydrolase) Mutant C73a
Length = 471
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 569 IIRTLDLPIYITKIKGNQVY---YLDRECSPHVLRIDPTEFKFKLA---------LIN-- 614
I R + L + I ++ N+ + Y+D++ H ++ P EF K A LIN
Sbjct: 233 IFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP 292
Query: 615 -HKYEEVLHIVRNSRLVGQSIIAYL 638
H Y +++ I R ++G + YL
Sbjct: 293 RHPYGKLIKIDRLGNVLGGDAVIYL 317
>pdb|2DZZ|A Chain A, Crystal Structure Of N392v Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 569 IIRTLDLPIYITKIKGNQVY---YLDRECSPHVLRIDPTEFKFKLA---------LIN-- 614
I R + L + I ++ N+ + Y+D++ H ++ P EF K A LIN
Sbjct: 220 IFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP 279
Query: 615 -HKYEEVLHIVRNSRLVGQSIIAYL 638
H Y +++ I R ++G + YL
Sbjct: 280 RHPYGKLIKIDRLGNVLGGDAVIYL 304
>pdb|2DZY|A Chain A, Crystal Structure Of N392a Mutant Of Yeast Bleomycin
Hydrolase
Length = 457
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 569 IIRTLDLPIYITKIKGNQVY---YLDRECSPHVLRIDPTEFKFKLA---------LIN-- 614
I R + L + I ++ N+ + Y+D++ H ++ P EF K A LIN
Sbjct: 220 IFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP 279
Query: 615 -HKYEEVLHIVRNSRLVGQSIIAYL 638
H Y +++ I R ++G + YL
Sbjct: 280 RHPYGKLIKIDRLGNVLGGDAVIYL 304
>pdb|1GCB|A Chain A, Gal6, Yeast Bleomycin Hydrolase Dna-Binding Protease
(Thiol)
Length = 454
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 15/85 (17%)
Query: 569 IIRTLDLPIYITKIKGNQVY---YLDRECSPHVLRIDPTEFKFKLA---------LIN-- 614
I R + L + I ++ N+ + Y+D++ H ++ P EF K A LIN
Sbjct: 216 IFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDP 275
Query: 615 -HKYEEVLHIVRNSRLVGQSIIAYL 638
H Y +++ I R ++G + YL
Sbjct: 276 RHPYGKLIKIDRLGNVLGGDAVIYL 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,017,695
Number of Sequences: 62578
Number of extensions: 782336
Number of successful extensions: 2471
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1708
Number of HSP's gapped (non-prelim): 437
length of query: 641
length of database: 14,973,337
effective HSP length: 105
effective length of query: 536
effective length of database: 8,402,647
effective search space: 4503818792
effective search space used: 4503818792
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)