BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9329
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 98.2 bits (243), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/83 (59%), Positives = 60/83 (72%), Gaps = 5/83 (6%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NHTS++HPWFI+S DK +PY DYY W+D K QPPNN+ S FGGSA
Sbjct: 107 MRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGK----DNQPPNNYPSFFGGSA 162
Query: 60 WEWNDKRQQYYYHAFAIQQPDLN 82
W+ + K QYY H FA QQPDLN
Sbjct: 163 WQKDAKSGQYYLHYFARQQPDLN 185
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 94.4 bits (233), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/89 (50%), Positives = 64/89 (71%), Gaps = 5/89 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
+K++LD V NHTS+EHPWFI+S + +P D+YIW+D K +G+ PNNW S FGGSA
Sbjct: 93 LKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGK--DGRE--PNNWESIFGGSA 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAV 88
W+++++ QYY H F ++QPDLN+ V
Sbjct: 149 WQYDERTGQYYLHIFDVKQPDLNWENSEV 177
>pdb|3GBD|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum
pdb|3GBE|A Chain A, Crystal Structure Of The Isomaltulose Synthase Smua From
Protaminobacter Rubrum In Complex With The Inhibitor
Deoxynojirimycin
Length = 558
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 60/84 (71%), Gaps = 5/84 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NHTS+++ WF+KS K +PY YY WKDAK + Q PNN+ S FGGSA
Sbjct: 93 MRLMIDVVINHTSDQNEWFVKSKSSKDNPYRGYYFWKDAK----EGQAPNNYPSFFGGSA 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNY 83
W+ ++K QYY H FA QQPDLN+
Sbjct: 149 WQKDEKTNQYYLHYFAKQQPDLNW 172
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 85.9 bits (211), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 60/89 (67%), Gaps = 5/89 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
MKL++D V NHTS+EH WFI+S K + Y DYYIW+ K + + PNNW + F GSA
Sbjct: 93 MKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGK----EGKEPNNWGAAFSGSA 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAV 88
W++++ +YY H F+ +QPDLN+ + V
Sbjct: 149 WQYDEMTDEYYLHLFSKKQPDLNWDNEKV 177
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NH+S++H WF S K +PY DYY W+D K PNN+ S FGGSA
Sbjct: 121 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGHEPNNYPSFFGGSA 176
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
WE + QYY H F QQPDLN+ + +E+
Sbjct: 177 WEKDPVTGQYYLHYFGRQQPDLNWDTPKLREEL 209
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NH+S++H WF S K +PY DYY W+D K PNN+ S FGGSA
Sbjct: 93 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGHEPNNYPSFFGGSA 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
WE + QYY H F QQPDLN+ + +E+
Sbjct: 149 WEKDPVTGQYYLHYFGRQQPDLNWDTPKLREEL 181
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NH+S++H WF S K +PY DYY W+D K PNN+ S FGGSA
Sbjct: 94 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGHEPNNYPSFFGGSA 149
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
WE + QYY H F QQPDLN+ + +E+
Sbjct: 150 WEKDPVTGQYYLHYFGRQQPDLNWDTPKLREEL 182
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NH+S++H WF S K +PY DYY W+D K PNN+ S FGGSA
Sbjct: 93 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGHEPNNYPSFFGGSA 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
WE + QYY H F QQPDLN+ + +E+
Sbjct: 149 WEKDPVTGQYYLHYFGRQQPDLNWDTPKLREEL 181
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NH+S++H WF S K +PY DYY W+D K PNN+ S FGGSA
Sbjct: 93 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGHEPNNYPSFFGGSA 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
WE + QYY H F QQPDLN+ + +E+
Sbjct: 149 WEKDPVTGQYYLHYFGRQQPDLNWDTPKLREEL 181
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NH+S++H WF S K +PY DYY W+D K PNN+ S FGGSA
Sbjct: 94 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGHEPNNYPSFFGGSA 149
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
WE + QYY H F QQPDLN+ + +E+
Sbjct: 150 WEKDPVTGQYYLHYFGRQQPDLNWDTPKLREEL 182
>pdb|3AXH|A Chain A, Crystal Structure Of Isomaltase In Complex With Isomaltose
pdb|3AXI|A Chain A, Crystal Structure Of Isomaltase In Complex With Maltose
Length = 589
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKI--VNGKRQPPNNWLSCFGG 57
MK + D V NH S+EH WF +S K +P D++ W+ K GK PPNNW S FGG
Sbjct: 102 MKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGG 161
Query: 58 SAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMKVRALKY 99
SAW +++K Q++Y F QPDLN+ + + A+ Y
Sbjct: 162 SAWTFDEKTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGY 203
>pdb|3A47|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3A4A|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
pdb|3AJ7|A Chain A, Crystal Structure Of Isomaltase From Saccharomyces
Cerevisiae
Length = 589
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKI--VNGKRQPPNNWLSCFGG 57
MK + D V NH S+EH WF +S K +P D++ W+ K GK PPNNW S FGG
Sbjct: 102 MKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGG 161
Query: 58 SAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMKVRALKY 99
SAW +++K Q++Y F QPDLN+ + + A+ Y
Sbjct: 162 SAWTFDEKTQEFYLRLFCSTQPDLNWENEDCRKAIYESAVGY 203
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 79.7 bits (195), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NH+S++H WF S K +PY DYY W+D K PNN+ S FGGSA
Sbjct: 94 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGHEPNNYPSFFGGSA 149
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
WE + QYY H QQPDLN+ + +E+
Sbjct: 150 WEKDPVTGQYYLHYLGRQQPDLNWDTPKLREEL 182
>pdb|2ZID|A Chain A, Crystal Structure Of Dextran Glucosidase E236q Complex
With Isomaltotriose
Length = 543
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 14/87 (16%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYT---DYYIWKDAKIVNGKRQPPNNWLSCFGG 57
+K+++D V NHTS+EH WFI++ + HP + DYYIW D PN+ S FGG
Sbjct: 93 IKIIMDLVVNHTSDEHAWFIEA--REHPDSSERDYYIWCDQ---------PNDLESIFGG 141
Query: 58 SAWEWNDKRQQYYYHAFAIQQPDLNYR 84
SAW+++DK QYY H F+ +QPDLN+
Sbjct: 142 SAWQYDDKSDQYYLHFFSKKQPDLNWE 168
>pdb|2ZIC|A Chain A, Crystal Structure Of Streptococcus Mutans Dextran
Glucosidase
Length = 543
Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 14/87 (16%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYT---DYYIWKDAKIVNGKRQPPNNWLSCFGG 57
+K+++D V NHTS+EH WFI++ + HP + DYYIW D PN+ S FGG
Sbjct: 93 IKIIMDLVVNHTSDEHAWFIEA--REHPDSSERDYYIWCDQ---------PNDLESIFGG 141
Query: 58 SAWEWNDKRQQYYYHAFAIQQPDLNYR 84
SAW+++DK QYY H F+ +QPDLN+
Sbjct: 142 SAWQYDDKSDQYYLHFFSKKQPDLNWE 168
>pdb|4AIE|A Chain A, Structure Of Glucan-1,6-Alpha-Glucosidase From
Lactobacillus Acidophilus Ncfm
Length = 549
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
+K+V+D V NHTS++H WF+++ K + Y DYYIW+D PN+ S F GSA
Sbjct: 94 IKIVMDLVVNHTSDQHKWFVEAKKGKDNQYRDYYIWRDPV----DEHEPNDLKSAFSGSA 149
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYR 84
W+++++ QYY H FA QQPDLN++
Sbjct: 150 WKYDERSGQYYLHFFADQQPDLNWQ 174
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 1 MKLVLDFVPNHTSNEHPWFIK-SVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
+K+++D NHTS HPWF+K S DK Y DYY+W + + GG
Sbjct: 96 IKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETK-------LDGGRV 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNY 83
W ++ YY F PDLNY
Sbjct: 149 WHYSPTGM--YYGYFWSGMPDLNY 170
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 21/104 (20%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
+K+VLD +HT H WF K++ Y DYY+W + + +R+
Sbjct: 84 IKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKETDLDERR-------------- 129
Query: 61 EWNDKR-------QQYYYHAFAIQQPDLNYRFQAVVDEMKVRAL 97
EW+ ++ ++Y F PDLNY V DEMK L
Sbjct: 130 EWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQVFDEMKRLVL 173
>pdb|2WPG|A Chain A, Sucrose Hydrolase
Length = 637
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA- 59
+ L DFV NHT+++H W + Y DYY + N Q + F +A
Sbjct: 171 ISLCADFVLNHTADDHAWAQAARAGDTRYLDYYHHFADR--NAPDQYDTTLVQVFPQTAP 228
Query: 60 --WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMKVRALKYDN 101
+ W D+ +Q+ + F Q DLN+ AV EM + L+ N
Sbjct: 229 GNFTWVDETRQWMWTTFYPYQWDLNWSNPAVFGEMALAMLELAN 272
>pdb|3CZK|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Sucrose Complex
pdb|3CZL|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase(Suh)
E322q- Glucose Complex
Length = 644
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGG--- 57
+ L DFV NHT+++H W + Y DYY R P+ + + G
Sbjct: 170 ISLCADFVLNHTADDHAWAQAARAGDARYLDYYHH------FADRTVPDRYEATLGQVFP 223
Query: 58 ----SAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMKVRALKYDN 101
+ W D Q+ + F Q DLN+ AV +M + L+ N
Sbjct: 224 HTAPGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDMALAMLRLAN 271
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 1 MKLVLDFVPNHTSNEHPWFIK-SVDKIHPYTDYYIWKD 37
+K+ LD+V NHT HPWF + S PY +YY + +
Sbjct: 121 IKIYLDYVXNHTGTAHPWFTEASSSSESPYRNYYSFSE 158
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 1 MKLVLDFVPNHTSNEHPWFIK-SVDKIHPYTDYYIWKD 37
+K+ LD+V NHT HPWF + S PY +YY + +
Sbjct: 121 IKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSE 158
>pdb|3CZE|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Tris Complex
pdb|3CZG|A Chain A, Crystal Structure Analysis Of Sucrose Hydrolase (Suh)-
Glucose Complex
Length = 644
Score = 32.3 bits (72), Expect = 0.066, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGG--- 57
+ L DFV NHT+++H W + Y DYY R P+ + + G
Sbjct: 170 ISLCADFVLNHTADDHAWAQAARAGDARYLDYYHH------FADRTVPDRYEATLGQVFP 223
Query: 58 ----SAWEWNDKRQQYYYHAFAIQQPDLNYRFQAV 88
+ W D Q+ + F Q DLN+ AV
Sbjct: 224 HTAPGNFTWVDDTAQWXWTTFYPYQWDLNWSNPAV 258
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTD--YYIWKDAKI 40
+ V+DF+ NHTSNEH W + P D YYI+ D ++
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAG-DPLFDNFYYIFPDRRM 217
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTD--YYIWKDAKI 40
+ V+DF+ NHTSNEH W + P D YYI+ D ++
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAG-DPLFDNFYYIFPDRRM 217
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTD--YYIWKDAKI 40
+ V+DF+ NHTSNEH W + P D YYI+ D ++
Sbjct: 181 ISAVVDFIFNHTSNEHEWAQRCAAG-DPLFDNFYYIFPDRRM 221
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTD--YYIWKDAKI 40
+ V+DF+ NHTSNEH W + P D YYI+ D ++
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAG-DPLFDNFYYIFPDRRM 217
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTD--YYIWKDAKI 40
+ V+DF+ NHTSNEH W + P D YYI+ D ++
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAG-DPLFDNFYYIFPDRRM 217
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTD--YYIWKDAKI 40
+ V+DF+ NHTSNEH W + P D YYI+ D ++
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAG-DPLFDNFYYIFPDRRM 217
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTD--YYIWKDAKI 40
+ V+DF+ NHTSNEH W + P D YYI+ D ++
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAG-DPLFDNFYYIFPDRRM 217
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTD--YYIWKDAKI 40
+ V+DF+ NHTSNEH W + P D YYI+ D ++
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAG-DPLFDNFYYIFPDRRM 217
>pdb|1IZJ|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1 Mutant
Enzyme F313a
Length = 637
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 3 LVLDFVPNHTSNEHPWFIK 21
L+LD V NHT + HPWF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|1UH2|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseMALTO-Hexaose
Complex
pdb|1UH4|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase 1MALTO-
Tridecaose Complex
pdb|2D0G|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P5, A Pullulan Model Oligosaccharide
pdb|2D0H|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356nE396Q COMPLEXED WITH
P2, A Pullulan Model Oligosaccharide
Length = 637
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 3 LVLDFVPNHTSNEHPWFIK 21
L+LD V NHT + HPWF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|1IZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase 1 Mutant
Enzyme W398v
Length = 637
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 3 LVLDFVPNHTSNEHPWFIK 21
L+LD V NHT + HPWF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|1JI1|A Chain A, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1JI1|B Chain B, Crystal Structure Analysis Of Thermoactinomyces Vulgaris
R- 47 Alpha-amylase 1
pdb|1UH3|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-AmylaseACARBOSE
Complex
Length = 637
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 3 LVLDFVPNHTSNEHPWFIK 21
L+LD V NHT + HPWF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|2D0F|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 1 (Tvai) Mutant D356n Complexed With P2,
A Pullulan Model Oligosaccharide
Length = 637
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 3 LVLDFVPNHTSNEHPWFIK 21
L+LD V NHT + HPWF K
Sbjct: 259 LILDGVFNHTGDSHPWFDK 277
>pdb|1FI6|A Chain A, Solution Structure Of The Reps1 Eh Domain
Length = 92
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 60 WEWNDKRQQYYYHAFAIQQPDLN 82
W+ D+++QYY + F QPDLN
Sbjct: 1 WKITDEQRQYYVNQFKTIQPDLN 23
>pdb|3UCQ|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis
pdb|3UER|A Chain A, Crystal Structure Of Amylosucrase From Deinococcus
Geothermalis In Complex With Turanose
Length = 655
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYY 33
+ LVLD V NH + EH W K+ Y Y+
Sbjct: 175 ISLVLDLVLNHVAREHAWAQKARAGDPKYRAYF 207
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 1 MKLVLDFVPNHTSNEHP 17
+K+++DF PNHTS P
Sbjct: 130 IKVIIDFAPNHTSPASP 146
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKD 37
+++V+D V NH + P I SV DKI P YY+ +D
Sbjct: 393 LRVVMDVVYNHLDSSGPCGISSVLDKIVP--GYYVRRD 428
>pdb|2AOZ|A Chain A, Crystal Structure Of The Myotoxin-Ii From Atropoides
Nummifer Venom
Length = 121
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 16 HPWFIKSVDKIHPYTDYYI--WKDAKIVNGKRQP 47
H K++ P TD Y WKD IV GK P
Sbjct: 47 HKCCYKALTDCSPKTDSYSYSWKDKTIVCGKNNP 80
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 1 MKLVLDFVPNHT---SNEHPWFIK 21
+K+++DF PNHT S++ P F +
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAE 153
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+V+DF PNHTS
Sbjct: 130 IKIVIDFAPNHTS 142
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+V+DF PNHTS
Sbjct: 130 IKIVIDFAPNHTS 142
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+V+DF PNHTS
Sbjct: 130 IKIVIDFAPNHTS 142
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+V+DF PNHTS
Sbjct: 130 IKIVIDFAPNHTS 142
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 25.8 bits (55), Expect = 7.3, Method: Composition-based stats.
Identities = 9/13 (69%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+V+DF PNHTS
Sbjct: 130 IKIVIDFAPNHTS 142
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+++DF PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+++DF PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+++DF PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+++DF PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+++DF PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+++DF PNHTS
Sbjct: 130 IKVIIDFAPNHTS 142
>pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
Length = 323
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 27 HPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYY 71
H Y D+++ AK+VN K +P +++ FGG+ + R Y +
Sbjct: 57 HEYVDWFL-SFAKVVNKKLKPDGSFVVDFGGAYMKGVPARSIYNF 100
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 1 MKLVLDFVPNHTS 13
+K+++DF PNHTS
Sbjct: 126 IKVIIDFAPNHTS 138
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Query: 1 MKLVLDFVPNHTS------NEHP-WFIKSVD 24
MK++LD V NHTS EHP WF D
Sbjct: 98 MKVMLDIVYNHTSPDSVLATEHPEWFYHDAD 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,792,226
Number of Sequences: 62578
Number of extensions: 159263
Number of successful extensions: 399
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 71
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)