Query psy9329
Match_columns 102
No_of_seqs 121 out of 1143
Neff 8.2
Searched_HMMs 46136
Date Sat Aug 17 00:32:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13840 sucrose phosphorylase 100.0 3.7E-29 7.9E-34 189.3 10.9 100 1-102 78-185 (495)
2 TIGR03852 sucrose_gtfA sucrose 99.9 3.4E-28 7.5E-33 183.1 7.2 96 1-102 73-181 (470)
3 PRK10933 trehalose-6-phosphate 99.9 1.9E-26 4.1E-31 177.0 10.4 97 1-101 95-191 (551)
4 TIGR02403 trehalose_treC alpha 99.9 2.2E-26 4.8E-31 176.4 10.4 97 1-102 89-185 (543)
5 TIGR02456 treS_nterm trehalose 99.9 4.3E-22 9.4E-27 152.7 11.0 98 1-101 90-188 (539)
6 COG0366 AmyA Glycosidases [Car 99.9 1.2E-21 2.7E-26 147.0 10.6 97 1-101 91-189 (505)
7 TIGR02455 TreS_stutzeri trehal 99.8 2.1E-21 4.5E-26 149.9 7.5 99 1-101 144-285 (688)
8 KOG0471|consensus 99.8 2.6E-21 5.7E-26 148.6 7.0 102 1-102 102-205 (545)
9 PF00128 Alpha-amylase: Alpha 99.8 1.9E-20 4.1E-25 132.0 6.0 94 1-102 66-160 (316)
10 PRK10785 maltodextrin glucosid 99.7 1.2E-17 2.7E-22 129.5 8.6 74 1-102 240-325 (598)
11 PRK09441 cytoplasmic alpha-amy 99.4 1.5E-12 3.3E-17 98.9 6.6 25 77-101 199-223 (479)
12 PRK09505 malS alpha-amylase; R 99.3 4.8E-12 1.1E-16 99.7 7.6 36 66-101 413-451 (683)
13 PLN00196 alpha-amylase; Provis 99.3 2.5E-11 5.3E-16 91.5 8.7 87 1-101 106-193 (428)
14 TIGR02401 trehalose_TreY malto 99.0 1.6E-09 3.6E-14 86.7 8.9 36 1-36 79-119 (825)
15 PRK03705 glycogen debranching 99.0 7.6E-10 1.6E-14 87.2 6.4 26 76-101 301-326 (658)
16 TIGR02100 glgX_debranch glycog 99.0 9.7E-10 2.1E-14 87.0 6.1 72 1-101 259-331 (688)
17 PLN02784 alpha-amylase 98.9 2.9E-09 6.2E-14 85.4 6.5 81 1-101 582-663 (894)
18 PRK12313 glycogen branching en 98.9 5.8E-09 1.3E-13 81.9 6.8 25 78-102 276-300 (633)
19 TIGR01515 branching_enzym alph 98.8 7.9E-09 1.7E-13 80.9 6.6 26 77-102 261-286 (613)
20 PLN02361 alpha-amylase 98.8 1.6E-08 3.5E-13 75.8 7.1 27 75-101 143-169 (401)
21 TIGR02402 trehalose_TreZ malto 98.7 1.4E-08 3.1E-13 78.6 4.4 23 79-101 209-234 (542)
22 TIGR02103 pullul_strch alpha-1 98.7 2.1E-08 4.5E-13 81.2 5.2 69 1-101 418-486 (898)
23 PRK05402 glycogen branching en 98.7 6.3E-08 1.4E-12 77.2 6.8 23 79-101 372-394 (726)
24 TIGR02104 pulA_typeI pullulana 98.7 7.2E-08 1.6E-12 75.5 6.8 23 79-101 287-309 (605)
25 PRK14510 putative bifunctional 98.6 9.7E-08 2.1E-12 79.7 6.7 73 1-101 261-333 (1221)
26 PLN02877 alpha-amylase/limit d 98.6 1.2E-07 2.7E-12 77.2 6.9 69 1-101 480-549 (970)
27 PLN02960 alpha-amylase 98.6 1.4E-07 3.1E-12 76.1 6.5 24 79-102 524-547 (897)
28 TIGR02102 pullulan_Gpos pullul 98.6 1.6E-07 3.4E-12 77.6 6.8 64 1-101 569-632 (1111)
29 PRK14507 putative bifunctional 98.5 7.7E-08 1.7E-12 81.8 4.1 38 1-38 821-863 (1693)
30 PRK14511 maltooligosyl trehalo 98.5 1.2E-07 2.6E-12 76.6 4.2 35 1-35 83-122 (879)
31 PRK14706 glycogen branching en 98.5 5.5E-07 1.2E-11 71.0 7.3 23 80-102 275-297 (639)
32 PRK12568 glycogen branching en 98.5 3.4E-07 7.4E-12 73.0 5.9 23 80-102 377-399 (730)
33 PLN02447 1,4-alpha-glucan-bran 98.4 5.5E-07 1.2E-11 72.0 6.1 24 79-102 358-381 (758)
34 PRK14705 glycogen branching en 98.3 1.3E-06 2.9E-11 72.8 6.2 24 79-102 872-895 (1224)
35 COG1523 PulA Type II secretory 98.2 2.9E-06 6.3E-11 67.4 5.9 24 79-102 327-350 (697)
36 PLN03244 alpha-amylase; Provis 98.1 7.8E-06 1.7E-10 65.7 6.4 24 79-102 499-522 (872)
37 TIGR01531 glyc_debranch glycog 97.4 8.4E-05 1.8E-09 62.8 2.5 22 1-22 199-220 (1464)
38 COG3280 TreY Maltooligosyl tre 97.4 0.00011 2.4E-09 58.8 2.4 37 1-37 82-123 (889)
39 COG0296 GlgB 1,4-alpha-glucan 97.2 0.00093 2E-08 52.9 6.0 22 81-102 273-294 (628)
40 smart00642 Aamy Alpha-amylase 96.9 0.00066 1.4E-08 45.3 1.9 14 1-14 84-97 (166)
41 KOG0470|consensus 96.3 0.0073 1.6E-07 48.5 4.8 24 79-102 370-393 (757)
42 PF14701 hDGE_amylase: glucano 96.0 0.0053 1.1E-07 46.7 2.4 22 1-22 91-112 (423)
43 cd06593 GH31_xylosidase_YicI Y 87.7 6.4 0.00014 28.4 8.2 23 79-101 125-147 (308)
44 KOG2212|consensus 84.5 1.7 3.8E-05 32.9 4.0 25 77-101 182-206 (504)
45 PF14872 GHL5: Hypothetical gl 83.8 2.5 5.5E-05 34.4 4.8 19 80-98 358-376 (811)
46 cd06592 GH31_glucosidase_KIAA1 75.0 28 0.0006 25.2 7.6 23 78-100 129-151 (303)
47 PF10945 DUF2629: Protein of u 73.0 3 6.5E-05 21.9 1.6 23 77-99 14-36 (44)
48 PRK10658 putative alpha-glucos 67.3 56 0.0012 26.6 8.3 24 78-101 383-406 (665)
49 KOG3625|consensus 63.4 3.8 8.2E-05 34.9 1.1 20 3-22 213-232 (1521)
50 PF02065 Melibiase: Melibiase; 63.1 9.2 0.0002 29.1 3.1 25 76-100 155-179 (394)
51 cd06591 GH31_xylosidase_XylS X 61.6 60 0.0013 23.6 8.3 20 79-98 124-143 (319)
52 PF02638 DUF187: Glycosyl hydr 58.9 11 0.00025 27.5 2.9 25 77-101 127-151 (311)
53 cd06599 GH31_glycosidase_Aec37 50.3 97 0.0021 22.5 7.4 19 80-98 134-152 (317)
54 PF13811 DUF4186: Domain of un 45.8 28 0.00061 21.9 2.7 18 85-102 94-111 (111)
55 PF04362 Iron_traffic: Bacteri 39.5 39 0.00085 20.4 2.6 21 80-100 54-74 (88)
56 COG1501 Alpha-glucosidases, fa 37.2 2.5E+02 0.0054 23.5 7.8 25 77-101 378-403 (772)
57 KOG4134|consensus 36.5 15 0.00032 26.1 0.5 32 4-35 110-147 (253)
58 PRK13990 cell division topolog 34.4 38 0.00083 20.5 2.0 16 86-101 46-61 (90)
59 PF07875 Coat_F: Coat F domain 34.2 46 0.001 18.2 2.2 16 83-98 27-42 (64)
60 PF08711 Med26: TFIIS helical 33.7 60 0.0013 16.9 2.6 19 83-101 32-50 (53)
61 COG0851 MinE Septum formation 32.6 52 0.0011 19.8 2.3 16 86-101 40-55 (88)
62 KOG4760|consensus 31.4 49 0.0011 24.7 2.5 22 80-101 299-320 (365)
63 PF12588 PSDC: Phophatidylseri 27.9 62 0.0013 21.1 2.3 19 83-101 93-111 (141)
64 PF08124 Lyase_8_N: Polysaccha 27.8 66 0.0014 23.6 2.7 19 83-101 80-98 (324)
65 PRK13991 cell division topolog 27.6 72 0.0016 19.1 2.4 16 86-101 40-55 (87)
66 COG2924 Uncharacterized protei 26.3 1.1E+02 0.0023 18.4 2.9 23 78-100 52-74 (90)
67 PF09508 Lact_bio_phlase: Lact 26.2 77 0.0017 26.1 3.0 27 76-102 172-198 (716)
68 PRK05408 oxidative damage prot 26.0 1.1E+02 0.0023 18.6 2.9 22 79-100 53-74 (90)
69 PF02388 FemAB: FemAB family; 25.2 87 0.0019 23.7 3.0 28 75-102 67-94 (406)
70 cd06597 GH31_transferase_CtsY 24.1 85 0.0018 23.2 2.7 23 79-101 152-174 (340)
71 PF00525 Crystallin: Alpha cry 23.6 23 0.00051 19.7 -0.2 11 13-23 4-14 (59)
72 PRK13989 cell division topolog 23.6 78 0.0017 18.7 2.0 16 86-101 41-56 (84)
73 PF04818 CTD_bind: RNA polymer 23.3 1.2E+02 0.0025 16.4 2.6 19 84-102 42-60 (64)
74 PHA02818 hypothetical protein; 22.8 7.8 0.00017 23.4 -2.4 15 4-18 22-36 (92)
75 TIGR03595 Obg_CgtA_exten Obg f 20.9 1.4E+02 0.0029 16.8 2.6 20 79-98 23-42 (69)
76 cd00197 VHS_ENTH_ANTH VHS, ENT 20.9 1.1E+02 0.0025 18.4 2.5 18 84-101 98-115 (115)
77 PF14195 DUF4316: Domain of un 20.8 35 0.00075 19.7 0.1 8 4-11 18-25 (70)
78 PF03776 MinE: Septum formatio 20.6 1E+02 0.0023 17.4 2.1 16 86-101 28-43 (70)
No 1
>PRK13840 sucrose phosphorylase; Provisional
Probab=99.96 E-value=3.7e-29 Score=189.32 Aligned_cols=100 Identities=19% Similarity=0.315 Sum_probs=82.1
Q ss_pred CEEEEeecccccCCCCHHHHHhhhC--CCCCCceEEeeCCcccCCCcCCCCCccccCC---CC---cceecCCCCcEEEE
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDK--IHPYTDYYIWKDAKIVNGKRQPPNNWLSCFG---GS---AWEWNDKRQQYYYH 72 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~--~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~---~~---~~~~~~~~~~~y~~ 72 (102)
||||||+|+||||++|||||+++++ +++|+|||+|.+.....+ .++.++.+++. ++ .|++.++..++||+
T Consensus 78 iklmlDlV~NHtS~~h~WFqd~l~~~~~s~Y~D~fi~~d~~~~~~--~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~ 155 (495)
T PRK13840 78 HDIMADLIVNHMSAESPQFQDVLAKGEASEYWPMFLTKDKVFPDG--ATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWT 155 (495)
T ss_pred CeEEEEECCCcCCCCcHHHHHHHHhCCCCCccCeEEECCCCCcCC--CCCcccccccCCCCCCcccceEecCCCceEEec
Confidence 7999999999999999999999864 899999999987422111 24455655553 33 45567777899999
Q ss_pred eeCCCCcccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 73 AFAIQQPDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 73 ~f~~~~pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
+|++.|||||++||+|+++|.+|+++|+++
T Consensus 156 tF~~~QpDLN~~NP~V~~~i~~il~fwl~~ 185 (495)
T PRK13840 156 TFTPQQIDIDVHSAAGWEYLMSILDRFAAS 185 (495)
T ss_pred cCCcccceeCCCCHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999974
No 2
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=99.95 E-value=3.4e-28 Score=183.12 Aligned_cols=96 Identities=17% Similarity=0.316 Sum_probs=76.6
Q ss_pred CEEEEeecccccCCCCHHHHHhhhC--CCCCCceEE-----eeCCcccCCCcCCCCCccccCCC------CcceecCCCC
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDK--IHPYTDYYI-----WKDAKIVNGKRQPPNNWLSCFGG------SAWEWNDKRQ 67 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~--~~~~~d~f~-----~~~~~~~~~~~~~p~~~~~~~~~------~~~~~~~~~~ 67 (102)
||||+|+|+||||++|||||+++++ +++|+|||+ |.++.+.. .++..++.+ ..|++.++++
T Consensus 73 ~kvmlDlV~NHtS~~h~WFq~~~~~~~~s~y~d~fi~~~~~w~~~~~~~------~d~~~v~~~~~~~~~~~~~~~~~~~ 146 (470)
T TIGR03852 73 YYLMFDFMINHISRQSEYYQDFLEKKDNSKYKDLFIRYKDFWPNGRPTQ------EDVDLIYKRKDRAPYQEVTFADGST 146 (470)
T ss_pred hhHHhhhcccccccchHHHHHHHhcCCCCCccceEEecccccCCCCccc------cccccccCCCCCCCCCceEEcCCCC
Confidence 6899999999999999999999986 899999999 44321100 111111211 2567777778
Q ss_pred cEEEEeeCCCCcccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 68 QYYYHAFAIQQPDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 68 ~~y~~~f~~~~pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
+|||++|++.|||||++||+|+++|.+|+++|+++
T Consensus 147 ~~~w~tF~~~QpDLN~~np~v~e~i~~il~fwl~~ 181 (470)
T TIGR03852 147 EKVWNTFGEEQIDLDVTSETTKRFIRDNLENLAEH 181 (470)
T ss_pred eEEEccCCccccccCCCCHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999974
No 3
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=99.94 E-value=1.9e-26 Score=177.05 Aligned_cols=97 Identities=45% Similarity=0.930 Sum_probs=87.5
Q ss_pred CEEEEeecccccCCCCHHHHHhhhCCCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCcc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQPD 80 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~pd 80 (102)
||||||+|+||||.+|+||+++++.++||+|||+|.++... .+|.+|.+.++++.|.+...+++||++.|.+.|||
T Consensus 95 i~vilD~V~NH~s~~~~wf~~~~~~~~~y~d~y~~~~~~~~----~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pd 170 (551)
T PRK10933 95 IRIILDMVFNHTSTQHAWFREALNKESPYRQFYIWRDGEPE----TPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQAD 170 (551)
T ss_pred CEEEEEECCCCccCchhHHHhhcCCCCCCcCceEecCCCCC----CCCCcccccCCCccccccCCCCceEeecccccCCc
Confidence 89999999999999999999998778999999999875431 35677888888888988888899999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHc
Q psy9329 81 LNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 81 LN~~np~v~~~~~~v~~~w~~ 101 (102)
||++||+|+++|++++++|++
T Consensus 171 Ln~~np~V~~~l~~~~~~W~~ 191 (551)
T PRK10933 171 LNWENPAVRAELKKVCEFWAD 191 (551)
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 4
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=99.94 E-value=2.2e-26 Score=176.44 Aligned_cols=97 Identities=47% Similarity=0.896 Sum_probs=87.5
Q ss_pred CEEEEeecccccCCCCHHHHHhhhCCCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCcc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQPD 80 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~pd 80 (102)
||||||+|+||||.+|+||+++++++++|+|||+|.+.. + .+|.+|.+.++++.|.+....++||++.|.+.|||
T Consensus 89 i~vilD~v~NH~~~~~~~f~~~~~~~~~y~~~y~~~~~~---~--~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pd 163 (543)
T TIGR02403 89 IKIMLDMVFNHTSTEHEWFKKALAGDSPYRDFYIWRDPK---G--KPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQAD 163 (543)
T ss_pred CEEEEEECccccccchHHHHHhhcCCCcccCceEecCCC---C--CCCCcccccCCCcCccccCCCCceEEeccCCcCCc
Confidence 899999999999999999999998889999999998754 2 35677888788888988777899999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHcC
Q psy9329 81 LNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 81 LN~~np~v~~~~~~v~~~w~~~ 102 (102)
||++||+|+++|.+++++|++.
T Consensus 164 ln~~np~v~~~i~~~~~~W~~~ 185 (543)
T TIGR02403 164 LNWENPEVREELKDVVNFWRDK 185 (543)
T ss_pred cCCCCHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999863
No 5
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=99.88 E-value=4.3e-22 Score=152.66 Aligned_cols=98 Identities=34% Similarity=0.650 Sum_probs=78.0
Q ss_pred CEEEEeecccccCCCCHHHHHhhhC-CCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDK-IHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQP 79 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~-~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~p 79 (102)
||||||+|+||||.+|+||++++++ +++|++||+|.+.... . ..+.......+++.|.++..++++|++.|.+.+|
T Consensus 90 i~vilD~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~p 166 (539)
T TIGR02456 90 MRVIIDLVLNHTSDQHPWFQEARSNPDGPYRDFYVWSDTDEK--Y-KDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQP 166 (539)
T ss_pred CEEEEEeccCcCCCCCHHHHHHhhCCCCCCCceEEecCCCcc--c-ccccccccccCCCCccccCCcCeeEEecccCCCC
Confidence 8999999999999999999999987 8899999998764321 0 0010000011234677777788999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHc
Q psy9329 80 DLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~~ 101 (102)
|||++||+||++|.+++++|++
T Consensus 167 dln~~np~vr~~l~~~~~~w~~ 188 (539)
T TIGR02456 167 DLNYDNPAVHDAVHDVMRFWLD 188 (539)
T ss_pred ccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 6
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=99.87 E-value=1.2e-21 Score=146.95 Aligned_cols=97 Identities=44% Similarity=0.913 Sum_probs=84.6
Q ss_pred CEEEEeecccccCCCCHHHHHhhhC-CCCCC-ceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCC
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDK-IHPYT-DYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQ 78 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~-~~~~~-d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~ 78 (102)
||||||+|+||||.+|+||+++++. ..+.+ +||+|.+.... ..+|.+|.+.+++..|+. ...+++|++.|...|
T Consensus 91 i~vi~D~V~NH~s~~~~~f~~~~~~~~~~~~~~~~~W~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 166 (505)
T COG0366 91 IKVILDLVFNHTSDEHPWFKEARSSKPNPKRSDYYIWRDPDPD---GTPPNNWFSVFGGDAWTW-GNTGEYYLHLFSSEQ 166 (505)
T ss_pred CEEEEEeccCcCCCccHHHHHHhcCCCCcccCCCceEccCccc---CCCCCcchhhcCCCCCCc-CCCCceEEEecCCCC
Confidence 8999999999999999999999987 55665 99999986541 135667777888888876 557899999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHHc
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
||||+.||+||+++.+++++|++
T Consensus 167 ~dln~~n~~v~~~~~~~~~~W~~ 189 (505)
T COG0366 167 PDLNWENPEVREELLDVVKFWLD 189 (505)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986
No 7
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=99.85 E-value=2.1e-21 Score=149.88 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=78.9
Q ss_pred CEEEEeecccccCCCCHHHHHhhhCCCCCCceE-----------EeeCCccc----------------CCCcCCCCCccc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYY-----------IWKDAKIV----------------NGKRQPPNNWLS 53 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~~~~~~d~f-----------~~~~~~~~----------------~~~~~~p~~~~~ 53 (102)
||||+|+|+||||..|+ |+.|..+.++|++|| +|.+.+.. .|+- +...-..
T Consensus 144 ~~vi~DlVpnHTs~ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i-~~~l~rv 221 (688)
T TIGR02455 144 AITIDDIIPAHTGKGAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYI-VGQLQRV 221 (688)
T ss_pred CEEEEEeCCCCCCCCcc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCc-ccccccc
Confidence 79999999999999999 999988899999999 77765532 0110 0000011
Q ss_pred c-----CCCCcceec--------CCCCcEEEEeeCCCCcccCCCCHH--HHHHHH-HHHHHHHc
Q psy9329 54 C-----FGGSAWEWN--------DKRQQYYYHAFAIQQPDLNYRFQA--VVDEMK-VRALKYDN 101 (102)
Q Consensus 54 ~-----~~~~~~~~~--------~~~~~~y~~~f~~~~pdLN~~np~--v~~~~~-~v~~~w~~ 101 (102)
. .+.+.|+++ ..+.+||+|.|.+.||||||.||. |+++|. +++++|++
T Consensus 222 iF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~~ 285 (688)
T TIGR02455 222 IFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAIDC 285 (688)
T ss_pred eecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHHH
Confidence 1 234679888 678899999999999999999999 999999 89999986
No 8
>KOG0471|consensus
Probab=99.84 E-value=2.6e-21 Score=148.58 Aligned_cols=102 Identities=43% Similarity=0.790 Sum_probs=93.2
Q ss_pred CEEEEeecccccCCCCHHHHHhhhCCCCCCceEEeeCCccc-CCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIV-NGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQP 79 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~~~~~~d~f~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~p 79 (102)
||||+|+|+||+|.+|+||+.....+..|+|||.|.++... .|.+.||.+|.+.+.+++|.++++++++|+++|...||
T Consensus 102 i~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~p 181 (545)
T KOG0471|consen 102 IKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQP 181 (545)
T ss_pred eEEEEeeccccCCccccccccCccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcCC
Confidence 79999999999999999999888775559999999987653 56788999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHH-HHHcC
Q psy9329 80 DLNYRFQAVVDEMKVRAL-KYDNA 102 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~-~w~~~ 102 (102)
|||++||+|+++|.++++ +|+++
T Consensus 182 Dln~~n~~V~~~~~~~l~~~~~~~ 205 (545)
T KOG0471|consen 182 DLNYENPDVRKAIKEWLRDFWLEK 205 (545)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999 88763
No 9
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=99.82 E-value=1.9e-20 Score=132.04 Aligned_cols=94 Identities=43% Similarity=0.849 Sum_probs=74.1
Q ss_pred CEEEEeecccccCCCCHHHHHhhhC-CCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDK-IHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQP 79 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~-~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~p 79 (102)
||||||+|+||+|..|+||+.+++. +.++++||.|.+... .+|.+|.+..++..|......+. +.+...+|
T Consensus 66 i~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 137 (316)
T PF00128_consen 66 IKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEG-----SPPGNWYSYFGGSNWEYDDWGDE---YQFWSDLP 137 (316)
T ss_dssp CEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTS-----TTSSTBBCSTTTSSEESCHHTHC---HSSSTTSE
T ss_pred ceEEEeeeccccccccccccccccccccccccceeeccccc-----ccccccccccccccccccccccc---cccccccc
Confidence 8999999999999999999999884 677999999986521 24556655555666654322221 44678999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 80 DLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~~~ 102 (102)
|||++||+||++|++++++|+++
T Consensus 138 dln~~n~~v~~~i~~~~~~w~~~ 160 (316)
T PF00128_consen 138 DLNYENPEVREYIIDVLKFWIEE 160 (316)
T ss_dssp EBETTSHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhcccccchhhc
Confidence 99999999999999999999974
No 10
>PRK10785 maltodextrin glucosidase; Provisional
Probab=99.73 E-value=1.2e-17 Score=129.53 Aligned_cols=74 Identities=32% Similarity=0.558 Sum_probs=59.0
Q ss_pred CEEEEeecccccCCCCHHHHHhhhC--------CCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEE
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDK--------IHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYH 72 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~--------~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~ 72 (102)
||||||+|+||||.+|+||+++..+ ++||+|||.|.+... .. .|. .
T Consensus 240 ikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~-------~~---------~w~--g-------- 293 (598)
T PRK10785 240 MRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGR-------AL---------DWL--G-------- 293 (598)
T ss_pred CEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCC-------cC---------CcC--C--------
Confidence 8999999999999999999987532 578999999864310 01 221 0
Q ss_pred eeCCCCcccCCCCHHHHHHHHH----HHHHHHcC
Q psy9329 73 AFAIQQPDLNYRFQAVVDEMKV----RALKYDNA 102 (102)
Q Consensus 73 ~f~~~~pdLN~~np~v~~~~~~----v~~~w~~~ 102 (102)
...|||||++||+|+++|++ |+++|+++
T Consensus 294 --~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~ 325 (598)
T PRK10785 294 --YASLPKLDFQSEEVVNEIYRGEDSIVRHWLKA 325 (598)
T ss_pred --CCcCccccCCCHHHHHHHHhhhhHHHHHhhcC
Confidence 36899999999999999995 99999963
No 11
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=99.36 E-value=1.5e-12 Score=98.92 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHc
Q psy9329 77 QQPDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 77 ~~pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
.+||||++||+|+++|++++++|++
T Consensus 199 ~lpDLn~~np~V~~~l~~~~~~w~~ 223 (479)
T PRK09441 199 MGADIDFRHPEVREELKYWAKWYME 223 (479)
T ss_pred cccccccCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999986
No 12
>PRK09505 malS alpha-amylase; Reviewed
Probab=99.32 E-value=4.8e-12 Score=99.70 Aligned_cols=36 Identities=14% Similarity=0.015 Sum_probs=30.5
Q ss_pred CCcEEEEeeCCCCcccCC---CCHHHHHHHHHHHHHHHc
Q psy9329 66 RQQYYYHAFAIQQPDLNY---RFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 66 ~~~~y~~~f~~~~pdLN~---~np~v~~~~~~v~~~w~~ 101 (102)
.+.++++.|...+||+|+ +||+|+++|++++++|++
T Consensus 413 ~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~ 451 (683)
T PRK09505 413 TQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQWVR 451 (683)
T ss_pred ccccccchhhhcCcccccccccCHHHHHHHHHHHHHHHH
Confidence 356778888888888876 689999999999999996
No 13
>PLN00196 alpha-amylase; Provisional
Probab=99.27 E-value=2.5e-11 Score=91.48 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=49.4
Q ss_pred CEEEEeecccccCCCCHHHHHhhhCCCCCCceEEeeCCcccCCCcCCCCCccccCCCC-cceecCCCCcEEEEeeCCCCc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGS-AWEWNDKRQQYYYHAFAIQQP 79 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~y~~~f~~~~p 79 (102)
||||+|+|+||++.+|.-++ ..|+.+..+.. ..+.+|....... ...+..+.+.+.-+.....+|
T Consensus 106 IkVilDvV~NH~~~~~~~~~---------~~y~~~~~~~~-----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 171 (428)
T PLN00196 106 VQVIADIVINHRTAEHKDGR---------GIYCLFEGGTP-----DSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAP 171 (428)
T ss_pred CEEEEEECccCcccccccCC---------CceEECCCCCC-----CCccccccccCCCCcccccCCCCceeCCCCCCCCC
Confidence 89999999999999885221 12333222110 1122232111000 001111222333333357999
Q ss_pred ccCCCCHHHHHHHHHHHHHHHc
Q psy9329 80 DLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~~ 101 (102)
|||++||+|+++|++++++|++
T Consensus 172 DLn~~np~V~~~l~~~~~wl~~ 193 (428)
T PLN00196 172 DIDHLNKRVQRELIGWLLWLKS 193 (428)
T ss_pred ccCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999987753
No 14
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.02 E-value=1.6e-09 Score=86.71 Aligned_cols=36 Identities=28% Similarity=0.744 Sum_probs=32.4
Q ss_pred CEEEEeecccccCCC---CHHHHHhhhC--CCCCCceEEee
Q psy9329 1 MKLVLDFVPNHTSNE---HPWFIKSVDK--IHPYTDYYIWK 36 (102)
Q Consensus 1 ikvilD~v~NHtS~~---h~wF~~a~~~--~~~~~d~f~~~ 36 (102)
|+||||+|+||+|.+ |+||+++++. +|+|++||.+.
T Consensus 79 m~vIlDiVpNH~a~~~~~n~wf~dvl~~g~~S~y~~~Fdid 119 (825)
T TIGR02401 79 LGLIVDIVPNHMAVHLEQNPWWWDVLKNGPSSAYAEYFDID 119 (825)
T ss_pred CEEEEEecccccccccccChHHHHHHHhCCCCCccCceEEe
Confidence 899999999999987 8999999984 89999999643
No 15
>PRK03705 glycogen debranching enzyme; Provisional
Probab=99.01 E-value=7.6e-10 Score=87.19 Aligned_cols=26 Identities=23% Similarity=-0.038 Sum_probs=23.9
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHHc
Q psy9329 76 IQQPDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 76 ~~~pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
...++||++||+|+++|++++++|++
T Consensus 301 g~g~~ln~~~p~Vr~~iid~l~~W~~ 326 (658)
T PRK03705 301 GCGNTLNLSHPAVVDWAIDCLRYWVE 326 (658)
T ss_pred CccCcccCCCHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999986
No 16
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=98.98 E-value=9.7e-10 Score=86.97 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=45.4
Q ss_pred CEEEEeecccccCCCCHHHHHh-hhCCCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQP 79 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a-~~~~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~p 79 (102)
|+||||+|+|||+..++..... ..+ .....||...... ...| ..+....+
T Consensus 259 I~VIlDvV~NHt~~~~~~~~~~~~~~-~d~~~yy~~~~~~---------------------------~~~~-~~~~g~gn 309 (688)
T TIGR02100 259 IEVILDVVYNHTAEGNELGPTLSFRG-IDNASYYRLQPDD---------------------------KRYY-INDTGTGN 309 (688)
T ss_pred CEEEEEECcCCccCcCCCCCcccccC-CCCCcceEecCCC---------------------------Ccee-cCCCCccc
Confidence 8999999999999987542211 111 0012333321110 0111 11234668
Q ss_pred ccCCCCHHHHHHHHHHHHHHHc
Q psy9329 80 DLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~~ 101 (102)
+||++||+||++|++++++|++
T Consensus 310 ~ln~~~p~vr~~i~d~l~~W~~ 331 (688)
T TIGR02100 310 TLNLSHPRVLQMVMDSLRYWVT 331 (688)
T ss_pred cccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999985
No 17
>PLN02784 alpha-amylase
Probab=98.91 E-value=2.9e-09 Score=85.40 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=51.2
Q ss_pred CEEEEeecccccCCCCHHHHHhhhC-CCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDK-IHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQP 79 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~-~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~p 79 (102)
|+||+|+|+||++.. |+.. .+ .++|.+++-|.+.... . ..+.|. +++.+|.+..+..+|
T Consensus 582 IkVIlDiViNH~ag~---f~~~-~g~~~~f~g~~dW~d~~i~----~---------ddp~F~---GrG~~~sgddf~~lP 641 (894)
T PLN02784 582 IKVLGDAVLNHRCAH---FQNQ-NGVWNIFGGRLNWDDRAVV----A---------DDPHFQ---GRGNKSSGDNFHAAP 641 (894)
T ss_pred CEEEEEECccccccc---ccCC-CCcccccCCeecCCCCccc----C---------CCcccC---CcCCcCcccccCcCC
Confidence 899999999999864 4432 22 3456665555443211 0 001111 122333333346899
Q ss_pred ccCCCCHHHHHHHHHHHHHHHc
Q psy9329 80 DLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~~ 101 (102)
|||+.||+||++|.+.+++|++
T Consensus 642 DLDh~npeVR~eL~~WlkWL~~ 663 (894)
T PLN02784 642 NIDHSQDFVRKDLKEWLCWMRK 663 (894)
T ss_pred cCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999997764
No 18
>PRK12313 glycogen branching enzyme; Provisional
Probab=98.87 E-value=5.8e-09 Score=81.88 Aligned_cols=25 Identities=12% Similarity=0.045 Sum_probs=22.8
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 78 QPDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 78 ~pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
.++||++||+||++|++++++|+++
T Consensus 276 ~~~~n~~~~~vr~~l~~~~~~W~~~ 300 (633)
T PRK12313 276 ALNFDLGKNEVRSFLISSALFWLDE 300 (633)
T ss_pred CcccCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999963
No 19
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=98.84 E-value=7.9e-09 Score=80.93 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=23.5
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 77 QQPDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 77 ~~pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
+.++||++||+||++|++++++|+++
T Consensus 261 ~~~~~~~~~~~Vr~~l~~~~~~W~~e 286 (613)
T TIGR01515 261 GTLIFDYGRPEVRNFLVANALYWAEF 286 (613)
T ss_pred CCceecCCCHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999963
No 20
>PLN02361 alpha-amylase
Probab=98.81 E-value=1.6e-08 Score=75.76 Aligned_cols=27 Identities=11% Similarity=0.037 Sum_probs=23.6
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHc
Q psy9329 75 AIQQPDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 75 ~~~~pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
...+||||++||+||++|++.+++|++
T Consensus 143 ~~~lpDLd~~np~Vr~~l~~~~~wl~~ 169 (401)
T PLN02361 143 FNGVPNIDHTQHFVRKDIIGWLIWLRN 169 (401)
T ss_pred CccCCccCCCCHHHHHHHHHHHHHHHh
Confidence 468999999999999999999985543
No 21
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=98.72 E-value=1.4e-08 Score=78.57 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=21.4
Q ss_pred cccCCCCH---HHHHHHHHHHHHHHc
Q psy9329 79 PDLNYRFQ---AVVDEMKVRALKYDN 101 (102)
Q Consensus 79 pdLN~~np---~v~~~~~~v~~~w~~ 101 (102)
++||+++| +||++|++++++|++
T Consensus 209 ~~~n~~~~~~~~vr~~i~~~~~~W~~ 234 (542)
T TIGR02402 209 AAINFDGPGSDEVRRYILDNALYWLR 234 (542)
T ss_pred CccccCCCcHHHHHHHHHHHHHHHHH
Confidence 57999999 999999999999996
No 22
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=98.70 E-value=2.1e-08 Score=81.24 Aligned_cols=69 Identities=19% Similarity=0.235 Sum_probs=47.3
Q ss_pred CEEEEeecccccCCCCHHHHHhhhCCCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCcc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQPD 80 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~pd 80 (102)
|+||||+|+|||+..++.++..+.+.. ..||...+.. |. +.+ ..+..+
T Consensus 418 i~VIlDVVyNHt~~~g~~~~s~ld~~~--P~YY~r~~~~---G~-------------------------~~n--~~~~~d 465 (898)
T TIGR02103 418 LNVVMDVVYNHTNASGPNDRSVLDKIV--PGYYHRLNED---GG-------------------------VEN--STCCSN 465 (898)
T ss_pred CEEEEEeecccccccCccCcccccccC--cHhhEeeCCC---CC-------------------------eec--CCCCcC
Confidence 899999999999999988764443321 2345432211 00 000 123357
Q ss_pred cCCCCHHHHHHHHHHHHHHHc
Q psy9329 81 LNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 81 LN~~np~v~~~~~~v~~~w~~ 101 (102)
+|.+||.||++|++.+++|++
T Consensus 466 ~a~e~~~Vrk~iiDsl~~W~~ 486 (898)
T TIGR02103 466 TATEHRMMAKLIVDSLVVWAK 486 (898)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999985
No 23
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.67 E-value=6.3e-08 Score=77.20 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=21.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHHc
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
.+||++||+||++|++++++|++
T Consensus 372 ~~~n~~~~~v~~~l~~~~~~W~~ 394 (726)
T PRK05402 372 LIFNYGRNEVRNFLVANALYWLE 394 (726)
T ss_pred ccccCCCHHHHHHHHHHHHHHHH
Confidence 36899999999999999999996
No 24
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=98.66 E-value=7.2e-08 Score=75.46 Aligned_cols=23 Identities=9% Similarity=-0.050 Sum_probs=21.5
Q ss_pred cccCCCCHHHHHHHHHHHHHHHc
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
.++|++||+||++|++++++|++
T Consensus 287 ~~~~~~~~~v~~~i~~~~~~W~~ 309 (605)
T TIGR02104 287 NDTASEREMMRKFIVDSVLYWVK 309 (605)
T ss_pred CCcccCCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999986
No 25
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=98.61 E-value=9.7e-08 Score=79.66 Aligned_cols=73 Identities=15% Similarity=0.155 Sum_probs=42.8
Q ss_pred CEEEEeecccccCCCCHHHHHhhhCCCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCcc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQPD 80 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~pd 80 (102)
|+||||+|+|||+.++.+.............||...... +.++. .|. + ...+
T Consensus 261 I~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~--------~~~y~------~~~-----G-------~gn~-- 312 (1221)
T PRK14510 261 IAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGN--------PKEYE------NWW-----G-------CGNL-- 312 (1221)
T ss_pred CEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCC--------CCccc------CCC-----C-------CCCc--
Confidence 899999999999999876521111111122345432111 00110 010 0 1233
Q ss_pred cCCCCHHHHHHHHHHHHHHHc
Q psy9329 81 LNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 81 LN~~np~v~~~~~~v~~~w~~ 101 (102)
+|+++|.|+++|++++++|++
T Consensus 313 ~n~~~p~v~~~i~d~lr~Wv~ 333 (1221)
T PRK14510 313 PNLERPFILRLPMDVLRSWAK 333 (1221)
T ss_pred cccCCHHHHHHHHHHHHHHHH
Confidence 466699999999999999985
No 26
>PLN02877 alpha-amylase/limit dextrinase
Probab=98.60 E-value=1.2e-07 Score=77.17 Aligned_cols=69 Identities=25% Similarity=0.329 Sum_probs=47.5
Q ss_pred CEEEEeecccccCCCCHHHHHh-hhCCCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQP 79 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a-~~~~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~p 79 (102)
|+||||+|+|||+..+||+.++ +.+.. .+||.+.+.. |. . .+ ..+.-
T Consensus 480 I~VImDVVyNHt~~~g~~~~~s~ld~~v--P~YY~r~~~~---G~--~-~n------------------------s~c~n 527 (970)
T PLN02877 480 LRVVLDVVYNHLHSSGPFDENSVLDKIV--PGYYLRRNSD---GF--I-EN------------------------STCVN 527 (970)
T ss_pred CEEEEEECCccccCCCCcchhhcccCCC--CCceEEECCC---CC--c-cc------------------------CCccC
Confidence 7999999999999999998644 33322 2567755432 11 0 00 01223
Q ss_pred ccCCCCHHHHHHHHHHHHHHHc
Q psy9329 80 DLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~~ 101 (102)
+.+.+++.||++|++.+++|+.
T Consensus 528 ~~Ase~~mvrklIlDsl~yW~~ 549 (970)
T PLN02877 528 NTASEHYMVDRLIVDDLLNWAV 549 (970)
T ss_pred CCccCCHHHHHHHHHHHHHHHH
Confidence 4577899999999999999986
No 27
>PLN02960 alpha-amylase
Probab=98.58 E-value=1.4e-07 Score=76.05 Aligned_cols=24 Identities=8% Similarity=-0.024 Sum_probs=22.0
Q ss_pred cccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
+.||+.+|+||++|++++++|+++
T Consensus 524 ~~fNy~~~eVr~fLlsna~yWl~E 547 (897)
T PLN02960 524 RMFKYGDHEVLHFLLSNLNWWVTE 547 (897)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHH
Confidence 569999999999999999999963
No 28
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=98.57 E-value=1.6e-07 Score=77.61 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=44.4
Q ss_pred CEEEEeecccccCCCCHHHHHhhhCCCCCCceEEeeCCcccCCCcCCCCCccccCCCCcceecCCCCcEEEEeeCCCCcc
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQPD 80 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a~~~~~~~~d~f~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~f~~~~pd 80 (102)
|+||||+|+|||+..|+ |+. ...+||.+.+... . +.+ ..+..+
T Consensus 569 I~VILDVVyNHt~~~~~-f~~------~~p~Yy~~~~~~G---~--~~~-------------------------~~~g~~ 611 (1111)
T TIGR02102 569 MGVILDVVYNHTAKVYI-FED------LEPNYYHFMDADG---T--PRT-------------------------SFGGGR 611 (1111)
T ss_pred CEEEEeccccccccccc-ccc------cCCCceEeeCCCC---C--ccc-------------------------ccCCCC
Confidence 89999999999999875 432 1224666543321 0 000 012347
Q ss_pred cCCCCHHHHHHHHHHHHHHHc
Q psy9329 81 LNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 81 LN~~np~v~~~~~~v~~~w~~ 101 (102)
||.++|.||++|++.+++|++
T Consensus 612 l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 612 LGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred CCcCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999986
No 29
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=98.53 E-value=7.7e-08 Score=81.75 Aligned_cols=38 Identities=26% Similarity=0.608 Sum_probs=33.6
Q ss_pred CEEEEeecccccC---CCCHHHHHhhh-C-CCCCCceEEeeCC
Q psy9329 1 MKLVLDFVPNHTS---NEHPWFIKSVD-K-IHPYTDYYIWKDA 38 (102)
Q Consensus 1 ikvilD~v~NHtS---~~h~wF~~a~~-~-~~~~~d~f~~~~~ 38 (102)
|+||||+|+||+| .+|+||+++++ + +|+|++||.+...
T Consensus 821 i~vilDiV~NH~~~~~~~n~w~~dvl~~g~~S~y~~~Fdidw~ 863 (1693)
T PRK14507 821 LGQLLDIVPNHMGVGGADNPWWLDVLENGPASPAADAFDIDWE 863 (1693)
T ss_pred CEEEEEecccccCCCccCCHHHHHHHHhCCCCCccCeeeeccC
Confidence 8999999999999 58999999997 4 8999999985543
No 30
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=98.50 E-value=1.2e-07 Score=76.64 Aligned_cols=35 Identities=37% Similarity=0.850 Sum_probs=31.0
Q ss_pred CEEEEeecccccCCC---CHHHHHhhh-C-CCCCCceEEe
Q psy9329 1 MKLVLDFVPNHTSNE---HPWFIKSVD-K-IHPYTDYYIW 35 (102)
Q Consensus 1 ikvilD~v~NHtS~~---h~wF~~a~~-~-~~~~~d~f~~ 35 (102)
|+||||+|+||+|.+ |+||+++++ + +|+|++||-+
T Consensus 83 i~VIlDiV~NH~~~~~~~n~ww~dvl~~g~~S~y~~~Fdi 122 (879)
T PRK14511 83 MGLILDIVPNHMAVGGPDNPWWWDVLEWGRSSPYADFFDI 122 (879)
T ss_pred CEEEEEeccccccCcCccCHHHHHHHHhCCCCCccCceee
Confidence 899999999999985 599999997 4 8999999953
No 31
>PRK14706 glycogen branching enzyme; Provisional
Probab=98.48 E-value=5.5e-07 Score=71.05 Aligned_cols=23 Identities=26% Similarity=0.174 Sum_probs=20.9
Q ss_pred ccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 80 DLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~~~ 102 (102)
.+|+.+|+||++|++++++|+++
T Consensus 275 ~~~~~~~eVr~~l~~~~~~W~~e 297 (639)
T PRK14706 275 IFDYGRNEVVMFLIGSALKWLQD 297 (639)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999963
No 32
>PRK12568 glycogen branching enzyme; Provisional
Probab=98.46 E-value=3.4e-07 Score=72.96 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=21.3
Q ss_pred ccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 80 DLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~~~ 102 (102)
++|+++|+||++|++++++|+++
T Consensus 377 ~~N~~~peVr~~li~~a~~Wl~e 399 (730)
T PRK12568 377 IYNYGRPEVTAYLLGSALEWIEH 399 (730)
T ss_pred ecccCCHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999963
No 33
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=98.42 E-value=5.5e-07 Score=72.01 Aligned_cols=24 Identities=13% Similarity=-0.039 Sum_probs=21.8
Q ss_pred cccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
..+|+.+++||++|++++++|+++
T Consensus 358 ~~~N~~~~eVr~fLl~~~~~Wl~e 381 (758)
T PLN02447 358 RLFNYGNWEVLRFLLSNLRWWLEE 381 (758)
T ss_pred ceecCCCHHHHHHHHHHHHHHHHH
Confidence 369999999999999999999963
No 34
>PRK14705 glycogen branching enzyme; Provisional
Probab=98.32 E-value=1.3e-06 Score=72.78 Aligned_cols=24 Identities=13% Similarity=0.097 Sum_probs=22.0
Q ss_pred cccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
..+|+.+++||++|++++++|+++
T Consensus 872 ~~fn~~~~eVr~fli~~a~~Wl~e 895 (1224)
T PRK14705 872 LIFDFGRTEVRNFLVANALYWLDE 895 (1224)
T ss_pred ceecCCCHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999974
No 35
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=98.21 E-value=2.9e-06 Score=67.44 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=21.7
Q ss_pred cccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
=.||.++|-||+.|++.+++|+++
T Consensus 327 Ntln~~hpmvrk~ivDsLrYWv~e 350 (697)
T COG1523 327 NTLNTEHPMVRKLIVDSLRYWVEE 350 (697)
T ss_pred cccccCChHHHHHHHHHHHHHHHH
Confidence 368999999999999999999863
No 36
>PLN03244 alpha-amylase; Provisional
Probab=98.12 E-value=7.8e-06 Score=65.72 Aligned_cols=24 Identities=8% Similarity=-0.079 Sum_probs=21.6
Q ss_pred cccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
..+|+.+|+|+++|++.+++|+++
T Consensus 499 ~~fnyg~~EVr~FLLsna~yWleE 522 (872)
T PLN03244 499 RMFKYGDLDVLHFLISNLNWWITE 522 (872)
T ss_pred ceecCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999963
No 37
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=97.44 E-value=8.4e-05 Score=62.83 Aligned_cols=22 Identities=36% Similarity=0.758 Sum_probs=20.6
Q ss_pred CEEEEeecccccCCCCHHHHHh
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKS 22 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a 22 (102)
|++|+|+|+||||.+|+||++.
T Consensus 199 m~~ilDvV~NHTa~ds~Wl~eH 220 (1464)
T TIGR01531 199 VLSITDIVFNHTANNSPWLLEH 220 (1464)
T ss_pred CEEEEEeeecccccCCHHHHhC
Confidence 7899999999999999999964
No 38
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.00011 Score=58.81 Aligned_cols=37 Identities=27% Similarity=0.664 Sum_probs=32.1
Q ss_pred CEEEEeecccccCCC---CHHHHHhhhC--CCCCCceEEeeC
Q psy9329 1 MKLVLDFVPNHTSNE---HPWFIKSVDK--IHPYTDYYIWKD 37 (102)
Q Consensus 1 ikvilD~v~NHtS~~---h~wF~~a~~~--~~~~~d~f~~~~ 37 (102)
|.+|+|+|+||++.. +||+.+.++. +|+|.+||=+..
T Consensus 82 lGlI~DIVPNHMav~g~~N~ww~DVLe~G~~S~ya~yFDI~W 123 (889)
T COG3280 82 LGLIVDIVPNHMAVGGHENPWWWDVLENGRDSAYANYFDIDW 123 (889)
T ss_pred CceEEEecccchhcccccChHHHHHHHhCcCccchhhccccc
Confidence 679999999999876 8999999994 899999997443
No 39
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.00093 Score=52.91 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.0
Q ss_pred cCCCCHHHHHHHHHHHHHHHcC
Q psy9329 81 LNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 81 LN~~np~v~~~~~~v~~~w~~~ 102 (102)
.|+..++||.+|++.+.+|+++
T Consensus 273 ~~~gr~EVR~Fll~nal~Wl~~ 294 (628)
T COG0296 273 FNYGRNEVRNFLLANALYWLEE 294 (628)
T ss_pred hccCcHHHHHHHHHHHHHHHHH
Confidence 4556899999999999999974
No 40
>smart00642 Aamy Alpha-amylase domain.
Probab=96.86 E-value=0.00066 Score=45.28 Aligned_cols=14 Identities=57% Similarity=0.878 Sum_probs=13.6
Q ss_pred CEEEEeecccccCC
Q psy9329 1 MKLVLDFVPNHTSN 14 (102)
Q Consensus 1 ikvilD~v~NHtS~ 14 (102)
|+||+|+|+||||.
T Consensus 84 i~vilD~V~NH~~~ 97 (166)
T smart00642 84 IKVILDVVINHTSD 97 (166)
T ss_pred CEEEEEECCCCCCC
Confidence 79999999999999
No 41
>KOG0470|consensus
Probab=96.32 E-value=0.0073 Score=48.51 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=21.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
--+|+++|+|+++|++-+++|+.+
T Consensus 370 r~fn~~~~~V~rflL~nLr~WVtE 393 (757)
T KOG0470|consen 370 RLFNYNHPVVLRFLLSNLRWWVTE 393 (757)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHh
Confidence 348999999999999999999853
No 42
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=95.97 E-value=0.0053 Score=46.69 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.7
Q ss_pred CEEEEeecccccCCCCHHHHHh
Q psy9329 1 MKLVLDFVPNHTSNEHPWFIKS 22 (102)
Q Consensus 1 ikvilD~v~NHtS~~h~wF~~a 22 (102)
|..|.|+|+|||+.+++|.++.
T Consensus 91 ll~~~DvV~NHtA~nS~Wl~eH 112 (423)
T PF14701_consen 91 LLSMTDVVLNHTANNSPWLREH 112 (423)
T ss_pred ceEEEEEeeccCcCCChHHHhC
Confidence 5689999999999999999853
No 43
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=87.67 E-value=6.4 Score=28.40 Aligned_cols=23 Identities=4% Similarity=-0.080 Sum_probs=19.2
Q ss_pred cccCCCCHHHHHHHHHHHHHHHc
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
.-+|+.||++++.+.+.++.+++
T Consensus 125 ~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 125 GIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred ccccCCCHHHHHHHHHHHHHHHH
Confidence 45789999999999998887653
No 44
>KOG2212|consensus
Probab=84.54 E-value=1.7 Score=32.87 Aligned_cols=25 Identities=12% Similarity=-0.090 Sum_probs=22.2
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHc
Q psy9329 77 QQPDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 77 ~~pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
++-|||..|.-||..|.+-|.+.++
T Consensus 182 GL~DL~Q~s~~Vr~Kive~L~hLid 206 (504)
T KOG2212|consen 182 GLLDLAQGSDYVRSKIAEYLNHLID 206 (504)
T ss_pred ecchhhhcchHHHHHHHHHHHHHHH
Confidence 7889999999999999998887764
No 45
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=83.79 E-value=2.5 Score=34.35 Aligned_cols=19 Identities=21% Similarity=0.080 Sum_probs=16.7
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy9329 80 DLNYRFQAVVDEMKVRALK 98 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~ 98 (102)
|||+.||.||.-+++.-|.
T Consensus 358 dlnhq~P~VRAILLEmQRR 376 (811)
T PF14872_consen 358 DLNHQNPVVRAILLEMQRR 376 (811)
T ss_pred cccccChHHHHHHHHHHHh
Confidence 7999999999999987664
No 46
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=74.97 E-value=28 Score=25.21 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=19.4
Q ss_pred CcccCCCCHHHHHHHHHHHHHHH
Q psy9329 78 QPDLNYRFQAVVDEMKVRALKYD 100 (102)
Q Consensus 78 ~pdLN~~np~v~~~~~~v~~~w~ 100 (102)
..-+|+.||++++.+.+.++..+
T Consensus 129 ~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 129 AAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred cceEeCCCHHHHHHHHHHHHHHH
Confidence 34588999999999999888765
No 47
>PF10945 DUF2629: Protein of unknown function (DUF2629); InterPro: IPR024487 Some members in this family of proteins are annotated as YhjR however currently no function is known.
Probab=73.03 E-value=3 Score=21.88 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=21.2
Q ss_pred CCcccCCCCHHHHHHHHHHHHHH
Q psy9329 77 QQPDLNYRFQAVVDEMKVRALKY 99 (102)
Q Consensus 77 ~~pdLN~~np~v~~~~~~v~~~w 99 (102)
++|++||-+-.-++.+..++..|
T Consensus 14 slp~~~Y~DIsr~e~l~~~~~RW 36 (44)
T PF10945_consen 14 SLPDINYIDISREERLNQALQRW 36 (44)
T ss_pred CCCCccHHHHHHHHHHHHHHHHC
Confidence 89999999998899999999888
No 48
>PRK10658 putative alpha-glucosidase; Provisional
Probab=67.30 E-value=56 Score=26.65 Aligned_cols=24 Identities=0% Similarity=-0.134 Sum_probs=19.2
Q ss_pred CcccCCCCHHHHHHHHHHHHHHHc
Q psy9329 78 QPDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 78 ~pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
..-+|+.||++|+...+.++..++
T Consensus 383 ~~~~Dftnp~ar~W~~~~~~~l~d 406 (665)
T PRK10658 383 MAIVDFTNPDACKWYADKLKGLLD 406 (665)
T ss_pred ceeecCCCHHHHHHHHHHHHHHHh
Confidence 345789999999999988877654
No 49
>KOG3625|consensus
Probab=63.45 E-value=3.8 Score=34.91 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=18.0
Q ss_pred EEEeecccccCCCCHHHHHh
Q psy9329 3 LVLDFVPNHTSNEHPWFIKS 22 (102)
Q Consensus 3 vilD~v~NHtS~~h~wF~~a 22 (102)
-|-|+|+|||..+++|.++.
T Consensus 213 si~DvV~NHtAnns~WlleH 232 (1521)
T KOG3625|consen 213 SITDVVYNHTANNSKWLLEH 232 (1521)
T ss_pred eeehhhhhccccCCchhHhC
Confidence 47899999999999999865
No 50
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=63.06 E-value=9.2 Score=29.05 Aligned_cols=25 Identities=16% Similarity=-0.122 Sum_probs=19.5
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHH
Q psy9329 76 IQQPDLNYRFQAVVDEMKVRALKYD 100 (102)
Q Consensus 76 ~~~pdLN~~np~v~~~~~~v~~~w~ 100 (102)
..+--||+.+|+|++++.+++...+
T Consensus 155 r~~~vLD~~~pev~~~l~~~i~~ll 179 (394)
T PF02065_consen 155 RNQYVLDLSNPEVRDYLFEVIDRLL 179 (394)
T ss_dssp TTBEEB-TTSHHHHHHHHHHHHHHH
T ss_pred ccceEEcCCCHHHHHHHHHHHHHHH
Confidence 4555699999999999999877654
No 51
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=61.60 E-value=60 Score=23.63 Aligned_cols=20 Identities=5% Similarity=-0.243 Sum_probs=15.6
Q ss_pred cccCCCCHHHHHHHHHHHHH
Q psy9329 79 PDLNYRFQAVVDEMKVRALK 98 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~ 98 (102)
.-+|+.||++++...+.++.
T Consensus 124 ~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 124 RFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred cccCCCCHHHHHHHHHHHHH
Confidence 45889999999988766553
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=58.95 E-value=11 Score=27.47 Aligned_cols=25 Identities=16% Similarity=-0.166 Sum_probs=19.9
Q ss_pred CCcccCCCCHHHHHHHHHHHHHHHc
Q psy9329 77 QQPDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 77 ~~pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
...=||=.+|+||++|.++++--++
T Consensus 127 ~~~~lnP~~PeVr~~i~~~v~Eiv~ 151 (311)
T PF02638_consen 127 GYYWLNPGHPEVRDYIIDIVKEIVK 151 (311)
T ss_pred CceEECCCCHHHHHHHHHHHHHHHh
Confidence 3345899999999999998876554
No 53
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=50.32 E-value=97 Score=22.55 Aligned_cols=19 Identities=5% Similarity=-0.125 Sum_probs=15.6
Q ss_pred ccCCCCHHHHHHHHHHHHH
Q psy9329 80 DLNYRFQAVVDEMKVRALK 98 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~ 98 (102)
-+|+.||++++...+.++.
T Consensus 134 ~~Dftnp~a~~ww~~~~~~ 152 (317)
T cd06599 134 FVDFTNPEGREWWKEGVKE 152 (317)
T ss_pred eecCCChHHHHHHHHHHHH
Confidence 3788999999999887743
No 54
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=45.80 E-value=28 Score=21.88 Aligned_cols=18 Identities=0% Similarity=-0.103 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHHcC
Q psy9329 85 FQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 85 np~v~~~~~~v~~~w~~~ 102 (102)
+++=++|+.+|+..||++
T Consensus 94 t~~eq~yiv~vi~~Wi~r 111 (111)
T PF13811_consen 94 TEEEQAYIVDVIMRWIER 111 (111)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 577789999999999975
No 55
>PF04362 Iron_traffic: Bacterial Fe(2+) trafficking; InterPro: IPR007457 The protein represented by this entry, YggX, serves to protect Fe-S clusters from oxidative damage []. The effect is two-fold: proteins that rely on Fe-S clusters do not become inactivated, and the release of free iron and hydrogen peroxide--a DNA damaging agent--is prevented. These observations are consistent with the hypothesis that YggX chelates free iron, and recent experiments show that YggX can indeed bind Fe(II) in vitro and in vivo []. Furthermore, YggX has a positive effect on the action of at least one Fe(II)-responsive protein. The combined actions of YggX is reminiscent of iron trafficking proteins [], and YggX is therefore proposed to play a role in Fe(II) trafficking []. In Escherichia coli, YggX was shown to be under the transcriptional control of the redox-sensing SoxRS system []. ; GO: 0005506 iron ion binding; PDB: 1YHD_A 1T07_A 1XS8_A.
Probab=39.47 E-value=39 Score=20.36 Aligned_cols=21 Identities=14% Similarity=0.003 Sum_probs=16.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHH
Q psy9329 80 DLNYRFQAVVDEMKVRALKYD 100 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~ 100 (102)
.||.-+|+.|+++.+-++.++
T Consensus 54 rLn~~dp~~R~~L~~qM~~Fl 74 (88)
T PF04362_consen 54 RLNMMDPEARKFLEEQMEKFL 74 (88)
T ss_dssp T--TTSHHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHh
Confidence 489999999999999888765
No 56
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=37.21 E-value=2.5e+02 Score=23.54 Aligned_cols=25 Identities=0% Similarity=-0.139 Sum_probs=18.6
Q ss_pred CCcccCCCCHHHHHHHH-HHHHHHHc
Q psy9329 77 QQPDLNYRFQAVVDEMK-VRALKYDN 101 (102)
Q Consensus 77 ~~pdLN~~np~v~~~~~-~v~~~w~~ 101 (102)
...=+||.||++|+... .+.+.+++
T Consensus 378 ~~a~~DFtnp~~r~Ww~~~~~~~l~d 403 (772)
T COG1501 378 NSAFPDFTNPDAREWWASDKKKNLLD 403 (772)
T ss_pred cccccCCCCHHHHHHHHHHHHhHHHh
Confidence 45558999999999998 45555543
No 57
>KOG4134|consensus
Probab=36.46 E-value=15 Score=26.13 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=23.3
Q ss_pred EEeecccccCCCC------HHHHHhhhCCCCCCceEEe
Q psy9329 4 VLDFVPNHTSNEH------PWFIKSVDKIHPYTDYYIW 35 (102)
Q Consensus 4 ilD~v~NHtS~~h------~wF~~a~~~~~~~~d~f~~ 35 (102)
||.+++||+|+.| --|..++...+--.||=.+
T Consensus 110 ~LeG~Vn~vS~sHIglLIhg~FNASIpk~nip~dw~fI 147 (253)
T KOG4134|consen 110 ILEGVVNHVSRSHIGLLIHGVFNASIPKTNIPADWEFI 147 (253)
T ss_pred eeeeeeeecchhhhceeehhhhhccCCCCCCccceeee
Confidence 6889999999998 4577777764444566543
No 58
>PRK13990 cell division topological specificity factor MinE; Provisional
Probab=34.39 E-value=38 Score=20.46 Aligned_cols=16 Identities=25% Similarity=0.221 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHc
Q psy9329 86 QAVVDEMKVRALKYDN 101 (102)
Q Consensus 86 p~v~~~~~~v~~~w~~ 101 (102)
|.++++|++|++++++
T Consensus 46 ~~lk~eIl~VI~KYv~ 61 (90)
T PRK13990 46 AELKDEIIEVVKKYVA 61 (90)
T ss_pred HHHHHHHHHHHHHhee
Confidence 6889999999998873
No 59
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=34.17 E-value=46 Score=18.17 Aligned_cols=16 Identities=0% Similarity=-0.184 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHH
Q psy9329 83 YRFQAVVDEMKVRALK 98 (102)
Q Consensus 83 ~~np~v~~~~~~v~~~ 98 (102)
-.||+||+.+.+++.-
T Consensus 27 ~~np~lR~~l~~~~~~ 42 (64)
T PF07875_consen 27 CANPELRQILQQILNE 42 (64)
T ss_pred HCCHHHHHHHHHHHHH
Confidence 4689999999987653
No 60
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=33.74 E-value=60 Score=16.92 Aligned_cols=19 Identities=11% Similarity=-0.039 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHHHc
Q psy9329 83 YRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 83 ~~np~v~~~~~~v~~~w~~ 101 (102)
-.||++++.-.++++.|.+
T Consensus 32 ~~~~~i~~~A~~Li~~Wk~ 50 (53)
T PF08711_consen 32 SENPEIRKLAKELIKKWKR 50 (53)
T ss_dssp TS-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhH
Confidence 4789999999999999964
No 61
>COG0851 MinE Septum formation topological specificity factor [Cell division and chromosome partitioning]
Probab=32.59 E-value=52 Score=19.83 Aligned_cols=16 Identities=19% Similarity=0.164 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHc
Q psy9329 86 QAVVDEMKVRALKYDN 101 (102)
Q Consensus 86 p~v~~~~~~v~~~w~~ 101 (102)
|.+|++|++|+.++++
T Consensus 40 ~~Lr~eIl~VI~KYV~ 55 (88)
T COG0851 40 EQLRKEILEVISKYVQ 55 (88)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 7899999999998864
No 62
>KOG4760|consensus
Probab=31.38 E-value=49 Score=24.70 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=20.5
Q ss_pred ccCCCCHHHHHHHHHHHHHHHc
Q psy9329 80 DLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 80 dLN~~np~v~~~~~~v~~~w~~ 101 (102)
.+||+|..|+.....++.||.+
T Consensus 299 ~f~f~~k~v~aky~~~~~fW~n 320 (365)
T KOG4760|consen 299 IFAFKEKEVRAKYQHYMAFWMN 320 (365)
T ss_pred eecccHHHHHHHHHHHHHHHhc
Confidence 4799999999999999999987
No 63
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=27.90 E-value=62 Score=21.13 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=16.5
Q ss_pred CCCHHHHHHHHHHHHHHHc
Q psy9329 83 YRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 83 ~~np~v~~~~~~v~~~w~~ 101 (102)
|.+|+|=+.|+.|+..|.+
T Consensus 93 F~~p~vN~~lK~ILn~W~~ 111 (141)
T PF12588_consen 93 FLDPDVNAQLKKILNEWGE 111 (141)
T ss_pred HcCHHHHHHHHHHHHHHHH
Confidence 4689999999999999963
No 64
>PF08124 Lyase_8_N: Polysaccharide lyase family 8, N terminal alpha-helical domain; InterPro: IPR012970 This family consists of a group of secreted bacterial lyase enzymes (4.2.2.1 from EC) capable of acting on hyaluronan and chondroitin in the extracellular matrix of host tissues, contributing to the invasive capacity of the pathogen.; PDB: 2WCO_A 2X03_B 2WDA_A 1N7N_A 1W3Y_A 1LXK_A 1LOH_A 1OJO_A 1C82_A 1EGU_A ....
Probab=27.81 E-value=66 Score=23.61 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=16.6
Q ss_pred CCCHHHHHHHHHHHHHHHc
Q psy9329 83 YRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 83 ~~np~v~~~~~~v~~~w~~ 101 (102)
+.||+|.+.|++.|++|.+
T Consensus 80 Y~n~~l~~~I~~aL~~~~~ 98 (324)
T PF08124_consen 80 YQNPALLNAILKALDWWYD 98 (324)
T ss_dssp TT-HHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999975
No 65
>PRK13991 cell division topological specificity factor MinE; Provisional
Probab=27.64 E-value=72 Score=19.09 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHc
Q psy9329 86 QAVVDEMKVRALKYDN 101 (102)
Q Consensus 86 p~v~~~~~~v~~~w~~ 101 (102)
|.++++|++|+..+++
T Consensus 40 ~~lk~eil~VIsKYv~ 55 (87)
T PRK13991 40 EQMKADLAEVIKRYVP 55 (87)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5778888889998874
No 66
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.35 E-value=1.1e+02 Score=18.36 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=18.5
Q ss_pred CcccCCCCHHHHHHHHHHHHHHH
Q psy9329 78 QPDLNYRFQAVVDEMKVRALKYD 100 (102)
Q Consensus 78 ~pdLN~~np~v~~~~~~v~~~w~ 100 (102)
--.||..|++-|+++.+-+...+
T Consensus 52 E~rLnm~n~e~Rk~Leqem~~fl 74 (90)
T COG2924 52 EKRLNMMNAEHRKLLEQEMVNFL 74 (90)
T ss_pred hhhcCcCCHHHHHHHHHHHHHHh
Confidence 34699999999999998776554
No 67
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=26.20 E-value=77 Score=26.10 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=18.9
Q ss_pred CCCcccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 76 IQQPDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 76 ~~~pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
+.+.-++-..|+.++++++-|+.|+++
T Consensus 172 eh~ipfDvr~p~t~~~~~~~L~~wl~~ 198 (716)
T PF09508_consen 172 EHQIPFDVRQPKTREYVLEWLRKWLEE 198 (716)
T ss_dssp -------TTSHHHHHHHHHHHHHHHHT
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 455578999999999999999999974
No 68
>PRK05408 oxidative damage protection protein; Provisional
Probab=26.04 E-value=1.1e+02 Score=18.56 Aligned_cols=22 Identities=14% Similarity=-0.007 Sum_probs=18.4
Q ss_pred cccCCCCHHHHHHHHHHHHHHH
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYD 100 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~ 100 (102)
-.||.-+|+-|++|.+-|+..+
T Consensus 53 ~rLn~~dp~ar~~L~~qMekF~ 74 (90)
T PRK05408 53 KRLNMMDPEARKFLEEQMEKFL 74 (90)
T ss_pred ccCCCCCHHHHHHHHHHHHHHh
Confidence 3589999999999998877654
No 69
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=25.23 E-value=87 Score=23.73 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=20.6
Q ss_pred CCCCcccCCCCHHHHHHHHHHHHHHHcC
Q psy9329 75 AIQQPDLNYRFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 75 ~~~~pdLN~~np~v~~~~~~v~~~w~~~ 102 (102)
.+.=|-+++.|+++...+++.++.++++
T Consensus 67 iprGPv~d~~d~ell~~f~~~Lk~~akk 94 (406)
T PF02388_consen 67 IPRGPVMDYSDEELLEFFLEELKKYAKK 94 (406)
T ss_dssp ETT--EC-TT-HHHHHHHHHHHHHHHCT
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3677899999999999999999988764
No 70
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.12 E-value=85 Score=23.18 Aligned_cols=23 Identities=4% Similarity=-0.111 Sum_probs=19.3
Q ss_pred cccCCCCHHHHHHHHHHHHHHHc
Q psy9329 79 PDLNYRFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~w~~ 101 (102)
.-+|+.||++++...+.++.+++
T Consensus 152 ~~~Dftnp~a~~Ww~~~~~~~~~ 174 (340)
T cd06597 152 LMLDFTNPEAAQWWMEKRRYLVD 174 (340)
T ss_pred eeecCCCHHHHHHHHHHHHHHHH
Confidence 34899999999999998887763
No 71
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=23.64 E-value=23 Score=19.70 Aligned_cols=11 Identities=36% Similarity=1.129 Sum_probs=7.4
Q ss_pred CCCCHHHHHhh
Q psy9329 13 SNEHPWFIKSV 23 (102)
Q Consensus 13 S~~h~wF~~a~ 23 (102)
..+||||+.+.
T Consensus 4 ~IqhPw~rR~~ 14 (59)
T PF00525_consen 4 AIQHPWFRRPL 14 (59)
T ss_dssp EE-HHHHHGGG
T ss_pred cccCccccccc
Confidence 34679999765
No 72
>PRK13989 cell division topological specificity factor MinE; Provisional
Probab=23.60 E-value=78 Score=18.75 Aligned_cols=16 Identities=25% Similarity=0.248 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHc
Q psy9329 86 QAVVDEMKVRALKYDN 101 (102)
Q Consensus 86 p~v~~~~~~v~~~w~~ 101 (102)
|.++++|++|+.++++
T Consensus 41 ~~lk~dil~VIsKYv~ 56 (84)
T PRK13989 41 PALQKELVAVISKYVK 56 (84)
T ss_pred HHHHHHHHHHHHHhee
Confidence 6788899999988864
No 73
>PF04818 CTD_bind: RNA polymerase II-binding domain.; InterPro: IPR006903 This entry represents a conserved region found in a number of uncharacterised eukaryotic proteins.; PDB: 2L0I_A 2KM4_A 3D9I_B 3D9N_B 3D9O_A 3D9P_B 3D9K_A 3D9M_A 3D9J_A 3D9L_A ....
Probab=23.34 E-value=1.2e+02 Score=16.38 Aligned_cols=19 Identities=5% Similarity=-0.066 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHcC
Q psy9329 84 RFQAVVDEMKVRALKYDNA 102 (102)
Q Consensus 84 ~np~v~~~~~~v~~~w~~~ 102 (102)
.++++++.+.+++.-|-++
T Consensus 42 ~~~~~~~kv~rll~iW~~r 60 (64)
T PF04818_consen 42 VDPEVRKKVQRLLNIWEER 60 (64)
T ss_dssp S-HHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCC
Confidence 3899999999999999764
No 74
>PHA02818 hypothetical protein; Provisional
Probab=22.82 E-value=7.8 Score=23.37 Aligned_cols=15 Identities=0% Similarity=0.228 Sum_probs=13.2
Q ss_pred EEeecccccCCCCHH
Q psy9329 4 VLDFVPNHTSNEHPW 18 (102)
Q Consensus 4 ilD~v~NHtS~~h~w 18 (102)
++|.+++|++.+++|
T Consensus 22 flDcII~eie~~~~~ 36 (92)
T PHA02818 22 FIECIIQEIEKQQYF 36 (92)
T ss_pred HHHHHHHHHHccCch
Confidence 478999999999988
No 75
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=20.95 E-value=1.4e+02 Score=16.83 Aligned_cols=20 Identities=5% Similarity=0.057 Sum_probs=16.6
Q ss_pred cccCCCCHHHHHHHHHHHHH
Q psy9329 79 PDLNYRFQAVVDEMKVRALK 98 (102)
Q Consensus 79 pdLN~~np~v~~~~~~v~~~ 98 (102)
...|+++++-..++.++|+.
T Consensus 23 ~~~~~~~~e~~~~f~~~L~~ 42 (69)
T TIGR03595 23 AKTPFNNDENLRRFARKLKK 42 (69)
T ss_pred HHcCCCCHHHHHHHHHHHHH
Confidence 44788999999999988875
No 76
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=20.92 E-value=1.1e+02 Score=18.39 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHHHHc
Q psy9329 84 RFQAVVDEMKVRALKYDN 101 (102)
Q Consensus 84 ~np~v~~~~~~v~~~w~~ 101 (102)
.++.||+.+++++.-|.+
T Consensus 98 ~~~~Vr~k~~~l~~~w~~ 115 (115)
T cd00197 98 VSTNVREKAIELVQLWAS 115 (115)
T ss_pred CChHHHHHHHHHHHHHhC
Confidence 378999999999999974
No 77
>PF14195 DUF4316: Domain of unknown function (DUF4316)
Probab=20.79 E-value=35 Score=19.67 Aligned_cols=8 Identities=25% Similarity=0.393 Sum_probs=6.6
Q ss_pred EEeecccc
Q psy9329 4 VLDFVPNH 11 (102)
Q Consensus 4 ilD~v~NH 11 (102)
|+|+|+|-
T Consensus 18 MIDGiiNN 25 (70)
T PF14195_consen 18 MIDGIINN 25 (70)
T ss_pred cccccccC
Confidence 68888887
No 78
>PF03776 MinE: Septum formation topological specificity factor MinE; InterPro: IPR005527 Cytokinesis needs to be regulated spatially in order to ensure that it occurs between the daughter genomes. In prokaryotes such as Escherichia coli, cytokinesis is initiated by FtsZ, a tubulin-like protein that assembles into a ring structure at the cell centre called the Z ring. A fundamental problem in prokaryotic cell biology is to understand how the midcell division site is identified. Two major negative regulatory systems are known to be involved in preventing Z-ring assembly at all sites except the midcell. One of these systems, called nucleoid occlusion, blocks Z-ring assembly in the area occupied by an unsegregated nucleoid until a critical stage in chromosome replication or segregation is reached. The other system consists of three proteins, MinC, MinD and MinE, which prevent assembly of Z rings in regions of the cell not covered by the nucleoid, such as the cell poles. MinC is an inhibitor of FtsZ polymerisation, resulting in the inhibition of Z ring assembly in the cell; MinD greatly enhances the inhibitory effects of MinC in vivo; and MinE antagonizes the effects of MinC and MinD []. MinE is a small bifunctional protein. The amino terminus of MinE is required to interact with MinD, while the carboxyl terminus is required for `topological specificity' - that is, the ability of MinE to antagonise MinCD inhibition of Z rings at the midcell position but not at the poles.; GO: 0032955 regulation of barrier septum formation, 0051301 cell division; PDB: 2KXO_A 3MCD_B 3KU7_A 3R9J_C 3R9I_E 1EV0_B.
Probab=20.60 E-value=1e+02 Score=17.38 Aligned_cols=16 Identities=19% Similarity=0.175 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHc
Q psy9329 86 QAVVDEMKVRALKYDN 101 (102)
Q Consensus 86 p~v~~~~~~v~~~w~~ 101 (102)
+.++++|.+|+..+++
T Consensus 28 ~~lk~eil~viskYv~ 43 (70)
T PF03776_consen 28 EQLKKEILEVISKYVE 43 (70)
T ss_dssp HHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhhee
Confidence 7789999999988864
Done!