RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9329
(102 letters)
>3aj7_A Oligo-1,6-glucosidase; (beta/alpha)8-barrel, hydrolase; 1.30A
{Saccharomyces cerevisiae} PDB: 3a4a_A* 3a47_A 3axi_A*
3axh_A*
Length = 589
Score = 144 bits (365), Expect = 3e-42
Identities = 40/95 (42%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVN--GKRQPPNNWLSCFGG 57
MK + D V NH S+EH WF +S K +P D++ W+ K + GK PPNNW S FGG
Sbjct: 102 MKFITDLVINHCSSEHEWFKESRSSKTNPKRDWFFWRPPKGYDAEGKPIPPNNWKSYFGG 161
Query: 58 SAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
SAW +++K Q++Y F QPDLN+ + +
Sbjct: 162 SAWTFDEKTQEFYLRLFCSTQPDLNWENEDCRKAI 196
>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family,
(beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila}
PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A*
3gbe_A* 3gbd_A*
Length = 557
Score = 143 bits (362), Expect = 5e-42
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NH+S++H WF S K +PY DYY W+D K PNN+ S FGGSA
Sbjct: 94 MRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGK----DGHEPNNYPSFFGGSA 149
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
WE + QYY H F QQPDLN+ + +E+
Sbjct: 150 WEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELY 183
>1m53_A Isomaltulose synthase; klebsiella SP. LX3, sucrose isomerization,
isomerase; 2.20A {Klebsiella SP} SCOP: b.71.1.1 c.1.8.1
Length = 570
Score = 143 bits (362), Expect = 6e-42
Identities = 50/94 (53%), Positives = 65/94 (69%), Gaps = 5/94 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
M+L++D V NHTS++HPWFI+S DK +PY DYY W+D K QPPNN+ S FGGSA
Sbjct: 107 MRLMIDVVINHTSDQHPWFIQSKSDKNNPYRDYYFWRDGK----DNQPPNNYPSFFGGSA 162
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
W+ + K QYY H FA QQPDLN+ V +++
Sbjct: 163 WQKDAKSGQYYLHYFARQQPDLNWDNPKVREDLY 196
>2ze0_A Alpha-glucosidase; TIM barrel, glucoside hydrolase, extremophIle,
hydrolase; 2.00A {Geobacillus SP}
Length = 555
Score = 142 bits (361), Expect = 7e-42
Identities = 44/94 (46%), Positives = 63/94 (67%), Gaps = 5/94 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
+K++LD V NHTS+EHPWFI+S + +P D+YIW+D K + PNNW S FGGSA
Sbjct: 93 LKVILDLVINHTSDEHPWFIESRSSRDNPKRDWYIWRDGK----DGREPNNWESIFGGSA 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
W+++++ QYY H F ++QPDLN+ V +
Sbjct: 149 WQYDERTGQYYLHIFDVKQPDLNWENSEVRQALY 182
>1uok_A Oligo-1,6-glucosidase; sugar degradation, hydrolase, TIM-barrel
glycosidase; 2.00A {Bacillus cereus} SCOP: b.71.1.1
c.1.8.1
Length = 558
Score = 141 bits (357), Expect = 3e-41
Identities = 42/94 (44%), Positives = 62/94 (65%), Gaps = 5/94 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
MKL++D V NHTS+EH WFI+S K + Y DYYIW+ K + + PNNW + F GSA
Sbjct: 93 MKLMMDLVVNHTSDEHNWFIESRKSKDNKYRDYYIWRPGK----EGKEPNNWGAAFSGSA 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
W++++ +YY H F+ +QPDLN+ + V ++
Sbjct: 149 WQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVY 182
>1wza_A Alpha-amylase A; hydrolase, halophilic, thermophilic; 1.60A
{Halothermothrix orenii} SCOP: b.71.1.1 c.1.8.1
Length = 488
Score = 136 bits (346), Expect = 5e-40
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
+K+++D NHTS HPWF+K+ DK Y DYY+W GG
Sbjct: 96 IKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPD-------TDTKETKLDGGRV 148
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
W ++ YY F PDLNY V +++
Sbjct: 149 WHYS--PTGMYYGYFWSGMPDLNYNNPEVQEKVI 180
>1lwj_A 4-alpha-glucanotransferase; alpha-amylase family, acarbose,
(beta/alpha)8 barrel; HET: ACG; 2.50A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1lwh_A*
Length = 441
Score = 135 bits (343), Expect = 7e-40
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
+K+VLD +HT H WF K++ Y DYY+W + + W G W
Sbjct: 84 IKVVLDLPIHHTGFLHTWFQKALKGDPHYRDYYVWANKE---TDLDERREW---DGEKIW 137
Query: 61 EWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
+ ++Y F PDLNY V DEMK
Sbjct: 138 HP-LEDGRFYRGLFGPFSPDLNYDNPQVFDEMK 169
>2zic_A Dextran glucosidase; TIM barrel, (beta/alpha)8-barrel, hydrolase;
2.20A {Streptococcus mutans} PDB: 2zid_A*
Length = 543
Score = 136 bits (346), Expect = 1e-39
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 10/94 (10%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSA 59
+K+++D V NHTS+EH WFI++ DYYIW D PN+ S FGGSA
Sbjct: 93 IKIIMDLVVNHTSDEHAWFIEAREHPDSSERDYYIWCD---------QPNDLESIFGGSA 143
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
W+++DK QYY H F+ +QPDLN+ + ++
Sbjct: 144 WQYDDKSDQYYLHFFSKKQPDLNWENANLRQKIY 177
>3k8k_A Alpha-amylase, SUSG; alpha8/BETA8 barrel, CBM, beta-sandwich,
membrane protein; 2.20A {Bacteroides thetaiotaomicron}
PDB: 3k8m_A* 3k8l_A*
Length = 669
Score = 107 bits (270), Expect = 4e-29
Identities = 21/120 (17%), Positives = 35/120 (29%), Gaps = 27/120 (22%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGK--RQPPNNWLSCFGG 57
+K+ LD+V NHT HPWF ++ PY +YY + + + + G
Sbjct: 121 IKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGY 180
Query: 58 SAWEWNDKRQQYYY------------------------HAFAIQQPDLNYRFQAVVDEMK 93
+A EW + PD + +
Sbjct: 181 NAAEWFQVSDETAAVKGLLKFTLDWSNAPSPILVVSTGTKADEDNPDTGTDNAKYLYYGE 240
Score = 92.5 bits (230), Expect = 1e-23
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 18/107 (16%)
Query: 1 MKLVLDFVPNH-----TSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSC 54
+L +DF TSN W + + KD K+ N
Sbjct: 254 YELTVDFESTWGLLIRTSNASFWPSGTKYGASSSSEKLALNKDFKLTNA----------- 302
Query: 55 FGGSAWEWNDKRQQYYYHAF-AIQQPDLNYRFQAVVDEMKVRALKYD 100
+ ++ ++ Y++ F DLNY E D
Sbjct: 303 GNPANIMFDSQQITYFHSHFCTDWFADLNYGPVDQAGESPAYQAIAD 349
>3czg_A Sucrose hydrolase; (alpha/beta)8-barrel; HET: GLC; 1.80A
{Xanthomonas axonopodis PV} PDB: 3cze_A* 3czl_A* 3czk_A*
2wpg_A
Length = 644
Score = 101 bits (254), Expect = 6e-27
Identities = 27/99 (27%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGG--- 57
+ L DFV NHT+++H W + Y DYY R P+ + + G
Sbjct: 170 ISLCADFVLNHTADDHAWAQAARAGDARYLDYYHHFA------DRTVPDRYEATLGQVFP 223
Query: 58 ----SAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
+ W D Q+ + F Q DLN+ AV +M
Sbjct: 224 HTAPGNFTWVDDTAQWMWTTFYPYQWDLNWSNPAVFGDM 262
>3hje_A 704AA long hypothetical glycosyltransferase; trehalose
biosynthesis, maltooligoside trehalose synthase (M
family 13 glycoside hydrolases; 1.90A {Sulfolobus
tokodaii str}
Length = 704
Score = 98.2 bits (245), Expect = 1e-25
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV----DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFG 56
+ ++ D VPNH + H + + Y +Y+ + + + K + P
Sbjct: 78 LGIIQDIVPNHMAVHHTNWRLMDVLKKGRHSRYYNYFDFYEEE---EKIRIPILG-DRNF 133
Query: 57 GSAWEWNDKRQQYYYHAFAIQQPDLNYR 84
+ ++ YY + F I NY
Sbjct: 134 KITYVNDEPYLDYYGNLFPINDEGRNYL 161
>3ucq_A Amylosucrase; thermostability, amylose synthesis, sucrose
isomerization, beta/alpha-barrel, carbohydrate binding,
transferase; 1.97A {Deinococcus geothermalis} PDB:
3uer_A*
Length = 655
Score = 94.2 bits (234), Expect = 3e-24
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYI-WKDAKIVNGKRQPPNNWLSCFGGSA 59
+ LVLD V NH + EH W K+ Y Y+ + D + + F
Sbjct: 175 ISLVLDLVLNHVAREHAWAQKARAGDPKYRAYFHLFPDRRGPDAFEATLPEIFPDFAPGN 234
Query: 60 WEWNDKRQQ----YYYHAFAIQQPDLNYRFQAVVDEM 92
+ W+++ + + + F Q DLN+ V E
Sbjct: 235 FSWDEEIGEGEGGWVWTTFNSYQWDLNWANPDVFLEF 271
>1g5a_A Amylosucrase; glycosyltransferase, glycoside hydrolase,
(beta-alpha)8 barrel; HET: EPE; 1.40A {Neisseria
polysaccharea} SCOP: b.71.1.1 c.1.8.1 PDB: 1jg9_A*
1mw1_A* 1mw2_A* 1mw3_A* 3ueq_A* 1jgi_A* 1mvy_A* 1mw0_A*
1s46_A* 1zs2_A*
Length = 628
Score = 93.0 bits (231), Expect = 8e-24
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGG-- 57
+ V+DF+ NHTSNEH W + YYI+ D ++ + Q F
Sbjct: 177 ISAVVDFIFNHTSNEHEWAQRCAAGDPLFDNFYYIFPDRRMPD---QYDRTLREIFPDQH 233
Query: 58 -SAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
+ + ++ + F Q DLNY V M
Sbjct: 234 PGGFSQ-LEDGRWVWTTFNSFQWDLNYSNPWVFRAM 268
>1iv8_A Maltooligosyl trehalose synthase; beta alpha barrel, intramolecular
transglucosylation, isomerase; HET: MLZ MLY; 1.90A
{Sulfolobus acidocaldarius} SCOP: b.71.1.1 c.1.8.1
Length = 720
Score = 83.4 bits (206), Expect = 2e-20
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFI-KSVDKIHPYTDYYIWKDAKIVNGKRQPP---NNWLSCFG 56
+ ++ D VPNH + + V + + YY + D + K + P + +
Sbjct: 80 LGIIQDIVPNHMAVNSLNWRLMDVLXMGXXSXYYTYFDFFPEDDKIRLPILGEDLDTVIS 139
Query: 57 GSAWEWNDKRQQYYYHAFAIQQPDLN--YRFQAVVDEMKVRALKYDNA 102
+ +Y+ F + P + + + + N
Sbjct: 140 KGLLKIVKDGDEYFLEYFKWKLPLTEVGNDIYDTLQKQNYTLMSWKNP 187
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 71.3 bits (175), Expect = 3e-16
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV--DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGS 58
+K+VLD +HT+ + F+K++ + PY + + + ++ L G
Sbjct: 326 IKIVLDITMHHTNPCNELFVKALREGENSPYWEMFSFLS----PPPKEIVELMLKYIDGE 381
Query: 59 AWEWND-------KRQQYYYHAFA--IQQPDLNYRFQAVVDEMK 93
+ + + +Y AF N+ VD
Sbjct: 382 ECRSRELYKLDYFRNNKPFYEAFFNIWLMAKFNHDNPRTVDYFI 425
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 71.0 bits (174), Expect = 4e-16
Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 19/104 (18%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIH--PYTDYYIWKDAKIVNG----------KRQPP 48
+++D + NH S E F + K Y ++ + NG + +P
Sbjct: 78 HNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPG 137
Query: 49 NNWLSCFGGSAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
+ + + + +F QQ D++ + +
Sbjct: 138 LPFT-------HYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYL 174
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 68.6 bits (168), Expect = 2e-15
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHP--YTDYYIWKDAKIVNGKRQPPNNWLSCFGGS 58
++++LD PN+ E+ WF VD + W A V+G + + + S
Sbjct: 96 IRVILDLTPNYRG-ENSWFSTQVDTVATKVKDALEFWLQAG-VDGFQ--VRDIENLKDAS 151
Query: 59 AW--EWNDKRQQYYYHAFAI 76
++ EW + + + I
Sbjct: 152 SFLAEWQNITKGFSEDRLLI 171
>2z1k_A (NEO)pullulanase; hydrolase, structural genomics, NPPSFA, national
project on structural and functional analyses; HET: GLC;
2.30A {Thermus thermophilus}
Length = 475
Score = 64.3 bits (157), Expect = 8e-14
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 22/95 (23%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV--DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGS 58
++++LD V NHT F + + PY D+Y K F
Sbjct: 111 VRVILDGVFNHTGRGFFAFQHLMENGEQSPYRDWYHVKG-----------------FPLK 153
Query: 59 AWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
A+ + Y + P L AV + +
Sbjct: 154 AYTAHP---NYEAWWGNPELPKLKVETPAVREYLL 185
>3edf_A FSPCMD, cyclomaltodextrinase; alpha-cyclodextrin complex,
glycosidase, hydrolase; HET: CE6 ACX; 1.65A
{Flavobacterium SP} PDB: 3edj_A* 3edk_A* 3ede_A 3edd_A*
1h3g_A
Length = 601
Score = 58.3 bits (141), Expect = 1e-11
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
M L+ D V +H H W K P D+ + + P +
Sbjct: 213 MGLIQDVVLSHIGKHHWWM-----KDLPTPDWINYGG-------KFVPTQHHRVAVQDPY 260
Query: 61 EWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
+ + F PDLN V + +
Sbjct: 261 AAQADSENFTKGWFVEGMPDLNQTNPLVANYLI 293
>3bh4_A Alpha-amylase; calcium, carbohydrate metabolism, glycosidase,
hydrolase, metal-binding, secreted; 1.40A {Bacillus
amyloliquefaciens} PDB: 1e43_A 1e3z_A* 1e40_A* 1e3x_A
1vjs_A 1ob0_A 1bli_A 1bpl_B 1bpl_A
Length = 483
Score = 58.3 bits (141), Expect = 1e-11
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 28/121 (23%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHP---------------------------YTDY- 32
+++ D V NH + + +++P Y+D+
Sbjct: 93 VQVYGDVVLNHKAGADATEDVTAVEVNPANRNQETSEEYQIKAWTDFRFPGRGNTYSDFK 152
Query: 33 YIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
+ W + + + F G W+ + + + D++Y VV E
Sbjct: 153 WHWYHFDGADWDESRKISRIFKFRGEGKAWDWEVSSENGNYDYLMYADVDYDHPDVVAET 212
Query: 93 K 93
K
Sbjct: 213 K 213
>1hvx_A Alpha-amylase; hydrolase, glycosyltransferase, thermostability;
2.00A {Geobacillus stearothermophilus} SCOP: b.71.1.1
c.1.8.1
Length = 515
Score = 58.3 bits (141), Expect = 1e-11
Identities = 19/121 (15%), Positives = 32/121 (26%), Gaps = 28/121 (23%)
Query: 1 MKLVLDFVPNHT--SNEHPWFIKSV-------DKIHPYTDYYIWKDAKI-VNGKRQPPNN 50
M++ D V +H ++ W +I W G
Sbjct: 96 MQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTKFDFPGRGNTYSSFK 155
Query: 51 WLS-CFGGSAWE-----------------WNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
W F G W+ W+ + + + DL+ VV E+
Sbjct: 156 WRWYHFDGVDWDESRKLSRIYKFRGIGKAWDWEVDTENGNYDYLMYADLDMDHPEVVTEL 215
Query: 93 K 93
K
Sbjct: 216 K 216
>3bc9_A AMYB, alpha amylase, catalytic region; acarbose, thermostable,
halophilic, N domain, starch binding, hydrolase; HET:
G6D GLC ACI BGC ACR; 1.35A {Halothermothrix orenii} PDB:
3bcd_A* 3bcf_A
Length = 599
Score = 57.6 bits (139), Expect = 2e-11
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 17/110 (15%)
Query: 1 MKLVLDFVPNHTS--NEHPWFIKS-VDKIHPYTDYYIWKDAKIVNGKRQPPN-NW-LSCF 55
+K+ D V NH + + + P W + N W CF
Sbjct: 223 IKVYFDAVLNHRMGADYAETVLLDENSRDKPGQYIKAWTGFNFPGRNGEYSNFTWNGQCF 282
Query: 56 GGSAW-EWNDKRQQYYYHAFAIQ-----------QPDLNYRFQAVVDEMK 93
G+ W +++ + +Y + + D++Y +AV +++
Sbjct: 283 DGTDWDDYSKESGKYLFDEKSWDWTYNWDEDYLMGADVDYENEAVQNDVI 332
>1gjw_A Maltodextrin glycosyltransferase; alpha-amylase,
maltosyltransferase; HET: MAL GLC; 2.1A {Thermotoga
maritima} SCOP: b.71.1.1 c.1.8.1 PDB: 1gju_A*
Length = 637
Score = 56.8 bits (136), Expect = 5e-11
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 12/84 (14%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
++++LDF+P + + + HP D++ W + PP F
Sbjct: 196 IRVILDFIPRTAARDSDLI-----REHP--DWFYWIKVE-ELADYTPPRAEELPFKVPDE 247
Query: 61 E----WNDKRQQYYYHAFAIQQPD 80
+ +K + P+
Sbjct: 248 DELEIIYNKENVKRHLKKFTLPPN 271
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 55.8 bits (135), Expect = 1e-10
Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 20/95 (21%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV--DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGS 58
+K+VLD V NH+S +F + P+ +++ + + + P N
Sbjct: 117 IKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGEFPAN-------- 168
Query: 59 AWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
Y A P+ N+ V + +
Sbjct: 169 ----------YVGWAGNRALPEFNHDNPEVREYIM 193
>3dhu_A Alpha-amylase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 2.00A {Lactobacillus
plantarum}
Length = 449
Score = 53.9 bits (130), Expect = 4e-10
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 35/99 (35%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
MK++LD V NHTS + + HP +Y D ++ N +W
Sbjct: 98 MKVMLDIVYNHTSPDSVLATE-----HPE-WFYHDADGQLTN----KVGDWSD------- 140
Query: 61 EWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMKVRALKY 99
DL+Y + L Y
Sbjct: 141 -----------------VKDLDYGHHELWQYQI-DTLLY 161
>1wzl_A Alpha-amylase II; pullulan, GH-13, alpha-amylase family, hydrolase;
2.00A {Thermoactinomyces vulgaris} SCOP: b.1.18.2
b.71.1.1 c.1.8.1 PDB: 1ji2_A 1bvz_A 1vfk_A* 3a6o_A*
1wzm_A 1jf6_A 1wzk_A 2d2o_A* 1jib_A* 1jl8_A* 1vb9_A*
1g1y_A* 1vfo_A* 1vfm_A* 1vfu_A* 1jf5_A
Length = 585
Score = 53.9 bits (130), Expect = 4e-10
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 22/95 (23%)
Query: 1 MKLVLDFVPNHTSNEHPWF--IKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGS 58
+K++LD V NH ++ F + + Y D++ +D P + S
Sbjct: 234 IKIILDAVFNHAGDQFFAFRDVLQKGEQSRYKDWFFIED---------FPVSKTSRTNYE 284
Query: 59 AWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
+ P L V + +
Sbjct: 285 TFAVQVPA-----------MPKLRTENPEVKEYLF 308
>1ea9_C Cyclomaltodextrinase; hydrolase, glycosidase; 3.2A {Bacillus SP}
SCOP: b.1.18.2 b.71.1.1 c.1.8.1
Length = 583
Score = 53.5 bits (129), Expect = 6e-10
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 22/94 (23%)
Query: 1 MKLVLDFVPNHTSNEHPWF--IKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGS 58
++++LD V NH+ P F + + Y D++ +
Sbjct: 233 IRVLLDAVFNHSGRTFPPFVDVLKNGEKSKYKDWFHIRSLP------------------- 273
Query: 59 AWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
E D Y AF P LN V + +
Sbjct: 274 -LEVVDGIPTYDTFAFEPLMPKLNTEHPDVKEYL 306
>3aie_A Glucosyltransferase-SI; beta-alpha-barrels; HET: MES; 2.10A
{Streptococcus mutans} PDB: 3aic_A* 3aib_A*
Length = 844
Score = 50.9 bits (121), Expect = 5e-09
Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYY----IWKDAKIVNGKRQPPNNWLSCFG 56
+K++ D+VP+ + + ++ Y I +V+GK + + +G
Sbjct: 707 IKVMADWVPDQMYALPEKEVVTATRVDKYGTPVAGSQIKNTLYVVDGKS-SGKDQQAKYG 765
Query: 57 GSAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMKVRALKYDN 101
G + ++ Q Y FA +Q V ++K + KY N
Sbjct: 766 G---AFLEELQAKYPELFARKQISTGVPMDPSV-KIKQWSAKYFN 806
>1j0h_A Neopullulanase; beta-alpha-barrels, hydrolase; 1.90A {Geobacillus
stearothermophilus} SCOP: b.1.18.2 b.71.1.1 c.1.8.1 PDB:
1j0i_A* 1j0j_A* 1j0k_A* 1sma_A 1gvi_A*
Length = 588
Score = 48.9 bits (117), Expect = 2e-08
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 23/94 (24%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV--DKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGS 58
++++LD V NH E F + Y D++ + +
Sbjct: 237 IRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPL------------------ 278
Query: 59 AWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEM 92
+ R Y AF Q P LN V +
Sbjct: 279 ---QTEPRPNYDTFAFVPQMPKLNTANPEVKRYL 309
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 47.5 bits (113), Expect = 8e-08
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
+K+++DF PNHTS ++ Y + + N
Sbjct: 126 IKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFHHNGG--------T 177
Query: 61 EWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
++ Y + F + DLN++ + +K
Sbjct: 178 TFSSLEDGIYRNLFDL--ADLNHQNPVIDRYLK 208
>1wpc_A Glucan 1,4-alpha-maltohexaosidase; maltohexaose-producing amylase,
alpha-amylase, acarbose, HYD; HET: ACI GLC GAL; 1.90A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1wp6_A*
2d3l_A* 2d3n_A* 2die_A 2gjp_A* 2gjr_A 1w9x_A*
Length = 485
Score = 46.4 bits (110), Expect = 2e-07
Identities = 14/122 (11%), Positives = 34/122 (27%), Gaps = 29/122 (23%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNG----------------- 43
+++ D V NH + +++P +
Sbjct: 97 IQVYGDVVMNHKGGADATEMVRAVEVNPNNRNQEVTGEYTIEAWTRFDFPGRGNTHSSFK 156
Query: 44 ------------KRQPPNNWLSCFGGSAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDE 91
+ + NN + F G W+ + + + D++ VV+E
Sbjct: 157 WRWYHFDGVDWDQSRRLNNRIYKFRGHGKAWDWEVDTENGNYDYLMYADIDMDHPEVVNE 216
Query: 92 MK 93
++
Sbjct: 217 LR 218
>1d3c_A Cyclodextrin glycosyltransferase; alpha-amylase, product complex,
oligosaccharide, family 13 glycosyl hydrolase,
transglycosylation; HET: GLC; 1.78A {Bacillus circulans}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1cxf_A*
1cxk_A* 1cdg_A* 1cxe_A* 1cxh_A* 1cxi_A* 2cxg_A* 1cgv_A*
2dij_A* 1cgy_A* 1kck_A* 1cgx_A* 1cxl_A* 1cgw_A* 1tcm_A
1kcl_A* 1eo5_A* 1eo7_A* 1dtu_A* 1ot1_A* ...
Length = 686
Score = 46.0 bits (109), Expect = 2e-07
Identities = 16/93 (17%), Positives = 30/93 (32%), Gaps = 10/93 (10%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
+K+++DF PNHTS + Y + + N+ + F
Sbjct: 130 IKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGG---------YTNDTQNLF-HHNG 179
Query: 61 EWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
+ + + DLN+ V +K
Sbjct: 180 GTDFSTTENGIYKNLYDLADLNHNNSTVDVYLK 212
>1ht6_A AMY1, alpha-amylase isozyme 1; barley, beta-alpha-barrel,
hydrolase; 1.50A {Hordeum vulgare} SCOP: b.71.1.1
c.1.8.1 PDB: 1p6w_A* 1rpk_A* 3bsg_A 2qpu_A* 1rp8_A*
1rp9_A* 2qps_A 3bsh_A* 1ava_A 1amy_A 1bg9_A*
Length = 405
Score = 45.5 bits (108), Expect = 3e-07
Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 15/94 (15%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLS-CFGGSA 59
++ + D V NH ++ Y I++ G +W
Sbjct: 83 VQAIADIVINHRCADYKDSRG---------IYCIFE-----GGTSDGRLDWGPHMICRDD 128
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
+++D A PD+++ V E+K
Sbjct: 129 TKYSDGTANLDTGADFAAAPDIDHLNDRVQRELK 162
>1ji1_A Alpha-amylase I; beta/alpha barrel, hydrolase; 1.60A
{Thermoactinomyces vulgaris} SCOP: b.1.18.2 b.71.1.1
c.1.8.1 PDB: 1uh3_A* 2d0f_A* 1izj_A 1uh4_A* 1uh2_A*
2d0g_A* 2d0h_A* 1izk_A
Length = 637
Score = 44.8 bits (106), Expect = 6e-07
Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 18/84 (21%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
L+LD V NHT + HPWF Y + + P N+ +
Sbjct: 257 GYLILDGVFNHTGDSHPWF----------DKYNNFSSQGAYESQSSPWYNY--------Y 298
Query: 61 EWNDKRQQYYYHAFAIQQPDLNYR 84
+ Y P LNY
Sbjct: 299 TFYTWPDSYASFLGFNSLPKLNYG 322
>1qho_A Alpha-amylase; glycoside hydrolase, starch degradation; HET: MAL
ABD; 1.70A {Geobacillus stearothermophilus} SCOP:
b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 1qhp_A*
Length = 686
Score = 44.8 bits (106), Expect = 8e-07
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 5/94 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQP-PNNWLSCFGGSA 59
+K+++DFVPNH++ + Y + + K N +S +
Sbjct: 122 IKVIVDFVPNHSTPFKANDSTFAEGGALYNNGTYMGNYFDDATKGYFHHNGDISNWDDRY 181
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
+ DL+ + +
Sbjct: 182 EAQWK----NFTDPAGFSLADLSQENGTIAQYLT 211
>1ua7_A Alpha-amylase; beta-alpha-barrels, acarbose, greek-KEY motif,
hydrolase; HET: ACI GLD GLC G6D BGC; 2.21A {Bacillus
subtilis} SCOP: b.71.1.1 c.1.8.1 PDB: 1bag_A* 3dc0_A
Length = 422
Score = 43.3 bits (102), Expect = 2e-06
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 25/93 (26%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
+K+++D V NHT+ ++ V ++ NW + +
Sbjct: 89 IKVIVDAVINHTTFDYAAISNEVK---SIPNWTHGNT---------QIKNWSDRWDVTQN 136
Query: 61 EWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
D N + V +K
Sbjct: 137 SLLG-------------LYDWNTQNTQVQSYLK 156
>3zss_A Putative glucanohydrolase PEP1A; alpha-glucan biosynthesis,
glycoside hydrolase FA; 1.80A {Streptomyces coelicolor}
PDB: 3zst_A* 3zt5_A* 3zt6_A* 3zt7_A*
Length = 695
Score = 43.4 bits (102), Expect = 2e-06
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 33/100 (33%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWK-DAKIVNGKRQPPNNWLSCFGGSA 59
+++ LDF S +HPW K HP +++ + D I + PP +
Sbjct: 335 LEIALDFALQC-SPDHPWVHK-----HP--EWFHHRPDGTIAHA-ENPPKKY-------- 377
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMKVRALKY 99
Q Y PD + E R L++
Sbjct: 378 --------QDIYPIAFDADPD------GLATETV-RILRH 402
>1ud2_A Amylase, alpha-amylase; calcium-free, alkaline, hydrolase; 2.13A
{Bacillus SP} SCOP: b.71.1.1 c.1.8.1 PDB: 1ud4_A 1ud5_A
1ud6_A 1ud8_A 1ud3_A
Length = 480
Score = 42.9 bits (101), Expect = 3e-06
Identities = 17/123 (13%), Positives = 36/123 (29%), Gaps = 34/123 (27%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDY---------------------------- 32
+ + D V NH +++P +
Sbjct: 95 INVYGDVVMNHKMGADFTEAVQAVQVNPTNRWQDISGAYTIDAWTGFDFSGRNNAYSDFK 154
Query: 33 YIWKDAKIVNGKRQPPNNWLSCFGGSAWEWN--DKRQQYYYHAFAIQQPDLNYRFQAVVD 90
+ W V+ ++ N + F + W W ++ Y Y ++++ V D
Sbjct: 155 WRWFHFNGVDWDQRYQENHIFRFANTNWNWRVDEENGNYDYLLG----SNIDFSHPEVQD 210
Query: 91 EMK 93
E+K
Sbjct: 211 ELK 213
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 42.9 bits (101), Expect = 3e-06
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
+K+++DF PNHTS + Y + + N + +GG+
Sbjct: 131 IKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTN------DTNGYFHHYGGT-- 182
Query: 61 EWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
+++ Y + F + DLN + + +K
Sbjct: 183 DFSSYEDGIYRNLFDL--ADLNQQNSTIDSYLK 213
>2guy_A Alpha-amylase A; (beta-alpha) 8 barrel, hydrolase; HET: NAG BMA;
1.59A {Aspergillus oryzae} SCOP: b.71.1.1 c.1.8.1 PDB:
2gvy_A* 3kwx_A* 6taa_A 7taa_A* 2taa_A
Length = 478
Score = 42.7 bits (101), Expect = 4e-06
Identities = 14/94 (14%), Positives = 28/94 (29%), Gaps = 18/94 (19%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGG-SA 59
M L++D V NH + P++ ++ F
Sbjct: 112 MYLMVDVVANHMGYDGAGSSVDYSVFKPFSS-----------------QDYFHPFCFIQN 154
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
+E + + + + PDL+ V +E
Sbjct: 155 YEDQTQVEDCWLGDNTVSLPDLDTTKDVVKNEWY 188
>2aaa_A Alpha-amylase; glycosidase; 2.10A {Aspergillus niger} SCOP:
b.71.1.1 c.1.8.1
Length = 484
Score = 37.4 bits (87), Expect = 2e-04
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 18/94 (19%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGG-SA 59
M L++D VP+H P+ +++ + +
Sbjct: 112 MYLMVDVVPDHMGYAGNGNDVDYSVFDPFDS-----------------SSYFHPYCLITD 154
Query: 60 WEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
W+ + + + PDL+ AV
Sbjct: 155 WDNLTMVEDCWEGDTIVSLPDLDTTETAVRTIWY 188
>1mxg_A Alpha amylase; hyperthermostable, family 13 glycosyl hydrola
(beta/alpha)8-barrel, hydrolase; HET: ACR ETE; 1.60A
{Pyrococcus woesei} SCOP: b.71.1.1 c.1.8.1 PDB: 1mwo_A*
1mxd_A* 3qgv_A*
Length = 435
Score = 36.0 bits (83), Expect = 7e-04
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 20/95 (21%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
+K++ D V NH + + +P+ Y W D V + N +
Sbjct: 101 IKVIADVVINHRAGGDLEW-------NPFVGDYTWTDFSKVASGKYTANYLD-------F 146
Query: 61 EWNDKRQQ--YYYHAFAIQQPDLNYRFQAVVDEMK 93
N+ + F PD+ + + +
Sbjct: 147 HPNELHCCDEGTFGGF----PDICHHKEWDQYWLW 177
>1gcy_A Glucan 1,4-alpha-maltotetrahydrolase; beta-alpha-barrel, beta
sheet; 1.60A {Pseudomonas stutzeri} SCOP: b.71.1.1
c.1.8.1 PDB: 1jdc_A* 1jda_A* 1jdd_A* 1qi5_A* 1qi3_A*
1qi4_A* 2amg_A 1qpk_A*
Length = 527
Score = 35.1 bits (80), Expect = 0.002
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 24/93 (25%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
+K++ D VPNH + +P +I+ W++ C +
Sbjct: 107 VKVLYDVVPNHMNRGYPDK-----EINLPAGQGFWRN---------------DCADPGNY 146
Query: 61 EWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
+ + DLN V +
Sbjct: 147 PNDCDDGDRFIGGD----ADLNTGHPQVYGMFR 175
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 29.9 bits (68), Expect = 0.13
Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 39 KIVNGKRQ--PPNNWLSCFGGSAWEW--NDKRQ--QYYYHAFAIQQPDLNYRFQAVVDEM 92
KI++G Q P+ WL+ G+ WE N+ + +Y + + +
Sbjct: 199 KIIDG-YQVETPDYWLN--SGNPWEIERNEVQIPVTFYGYVDRPEGGKTTLSASQWIGGE 255
Query: 93 KVRALKYD 100
+V A+ YD
Sbjct: 256 RVLAVAYD 263
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.29
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 24/73 (32%)
Query: 38 AKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYY-----YHAFAIQQPD---------LNY 83
IV+ P + + D QY+ +H I+ P+ L++
Sbjct: 447 RSIVD-HYNIPKTF--DSDDLIPPYLD---QYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 84 RFQAVVDEMKVRA 96
RF E K+R
Sbjct: 501 RFL----EQKIRH 509
>1hx0_A Alpha amylase (PPA); inhibitor, carbohydrate, pancreas, hydrolase;
HET: GLC AC1 BGC MAL; 1.38A {Sus scrofa} SCOP: b.71.1.1
c.1.8.1 PDB: 1wo2_A* 1ua3_A* 1kxq_A 1kxt_A 1kxv_A
1jfh_A* 1vah_A* 1ppi_A* 3l2m_A* 3l2l_A* 1dhk_A* 1ose_A*
1pig_A* 1pif_A* 1bvn_P 3oli_A* 3old_A* 3olg_A* 3ole_A*
3ij8_A* ...
Length = 496
Score = 26.7 bits (58), Expect = 1.5
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 5/94 (5%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAW 60
+++ +D V NH ++ V N+
Sbjct: 91 VRIYVDAVINHMCGSGAA--AGTGTTCGSYCNPGNREFPAVPYSAWDFNDGKCKTASGGI 148
Query: 61 E-WNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
E +ND Q + DL V +
Sbjct: 149 ESYNDPYQVRDCQLVGL--LDLALEKDYVRSMIA 180
>1wth_A Protein GP5, tail-associated lysozyme; triple-stranded beta-helix,
OB fold, pseudohexamer, T4 tail HUB, GP5-GP27; 2.80A
{Enterobacteria phage T4} PDB: 2z6b_A 1k28_A 1pdl_A
Length = 584
Score = 25.9 bits (55), Expect = 3.3
Identities = 9/54 (16%), Positives = 16/54 (29%)
Query: 19 FIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWLSCFGGSAWEWNDKRQQYYYH 72
D P ++K+ P + + G E++D Q Y
Sbjct: 360 SSDPADPPIPNDSRILFKEPVSSYKGEYPYVHTMETESGHIQEFDDTPGQERYR 413
>1g94_A Alpha-amylase; beta-alpha-8-barrel, 3 domain structure, hydrolase;
HET: DAF GLC; 1.74A {Pseudoalteromonas haloplanktis}
SCOP: b.71.1.1 c.1.8.1 PDB: 1g9h_A* 1l0p_A 1aqm_A*
1aqh_A* 1b0i_A 1jd7_A 1jd9_A 1kxh_A*
Length = 448
Score = 25.4 bits (55), Expect = 4.7
Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 22/97 (22%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSVDKIHPYTDYYIWKDAKIVNGKRQPPNNWL----SCFG 56
+ + +D + NH + K P + SC
Sbjct: 79 VDIYVDTLINHMAAGSGT----------------GTAGNSFGNKSFPIYSPQDFHESCTI 122
Query: 57 GSAWEWNDKRQQYYYHAFAIQQPDLNYRFQAVVDEMK 93
++ ND+ + + DL+ V + +
Sbjct: 123 NNSDYGNDRYRVQNCELVGL--ADLDTASNYVQNTIA 157
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 24.5 bits (53), Expect = 5.4
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 27 HPYTDYYIWKDAKIVNGKRQPPNNWLS 53
H Y YY +K + + +S
Sbjct: 61 HQYNAYYEFKKQFFLQKEGGDSMQAVS 87
>3ap1_A Protein-tyrosine sulfotransferase 2; sulfotransferase fold,
transferase; HET: A3P; 1.90A {Homo sapiens} PDB: 3ap2_A*
3ap3_A*
Length = 337
Score = 24.8 bits (54), Expect = 6.9
Identities = 5/44 (11%), Positives = 10/44 (22%), Gaps = 6/44 (13%)
Query: 37 DAKIVNGKRQPPNNWLSCF------GGSAWEWNDKRQQYYYHAF 74
++K + R + S G + A
Sbjct: 153 NSKFLLMVRDGRASVHSMITRKVTIAGFDLSSYRDCLTKWNKAI 196
>2fhf_A Pullulanase; multiple domain, beta-alpha-barrel,
alpha-amylase-family, complex with maltotetraose,
hydrolase; HET: GLC; 1.65A {Klebsiella aerogenes} SCOP:
b.1.18.2 b.1.18.2 b.3.1.3 b.71.1.1 c.1.8.1 PDB: 2fh6_A*
2fh8_A* 2fhb_A* 2fhc_A* 2fgz_A*
Length = 1083
Score = 24.6 bits (53), Expect = 7.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 1 MKLVLDFVPNHTSNEHPWFIKSV-DKIHPYTDYY 33
M +++D V NHT+ P SV DKI P+ YY
Sbjct: 597 MNVIMDVVYNHTNAAGPTDRTSVLDKIVPW--YY 628
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: a.217.1.1
Length = 64
Score = 23.5 bits (51), Expect = 8.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 27 HPYTDYYIWKDAKIVNGKRQPP 48
PY YY K ++ GK Q P
Sbjct: 42 DPYHAYYRHKVSEFKEGKAQEP 63
>4aio_A Limit dextrinase; hydrolase, pullulanase, glycoside hydrolase
family 13; 1.90A {Hordeum vulgare} PDB: 2x4c_A* 2y4s_A*
2y5e_A* 2x4b_A
Length = 884
Score = 24.4 bits (53), Expect = 8.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 4 VLDFVPNHTSNEHPWFIKSV-DKIHPYTDYYIWKDA 38
V+D V NH + P I SV DKI P YY+ +D
Sbjct: 396 VMDVVYNHLDSSGPCGISSVLDKIVP--GYYVRRDT 429
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.465
Gapped
Lambda K H
0.267 0.0675 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,753,591
Number of extensions: 90918
Number of successful extensions: 348
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 69
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.5 bits)