BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy933
(330 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of
Human Cask
Length = 180
Score = 272 bits (696), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 125/176 (71%), Positives = 152/176 (86%)
Query: 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE 149
S RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+PHTTR P+ DEENG+ YYF+SHD+
Sbjct: 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61
Query: 150 MMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVV 209
MM DI+ N+YLEYG+HEDAMYGTKLETIR+IH++G IAILDVEPQALK+LRT EF+PFVV
Sbjct: 62 MMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVV 121
Query: 210 FIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE 265
FIAAP + + D SL++L KESDIL+ Y H+FDLT++NN+I+ETI LE+A+E
Sbjct: 122 FIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVE 177
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 142/182 (78%), Gaps = 3/182 (1%)
Query: 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS 152
RKTLVL+GA GVGR HIKN L+++ P+K+ YPVP+TTR PR EE+G+ Y+FIS +EM
Sbjct: 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTR 78
Query: 153 DIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIA 212
+I+AN++LE+G+++ M+GTK ET+ +IH++ KIAILD+EPQ LKI+RT E SPF+VFIA
Sbjct: 79 NISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIA 138
Query: 213 APQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQ 272
++ +L++L K+S+ ++S Y H+FDL++VNN ++ET+ L++A ++ ++PQ
Sbjct: 139 PTDQGTQTE---ALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQ 195
Query: 273 WI 274
W+
Sbjct: 196 WV 197
>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of
Psd-95
pdb|1JXO|A Chain A, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
pdb|1JXO|B Chain B, Crystal Structure Of The Sh3-Hook-Gk Fragment Of Psd-95
Length = 301
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 38/288 (13%)
Query: 1 MFQIISKDDHNWWQARK---DNVAGSAGLIPSP---ELQEWRTACSTIDKTKHEQVNCSI 54
+ +I D WWQAR+ D+ G IPS E +EW K K +
Sbjct: 36 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRL-----KAKDWGSSSGS 90
Query: 55 FGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI 114
GR + +++YE V ++ + +++LG + + L+
Sbjct: 91 QGR------------------EDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLL 129
Query: 115 NKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTK 173
++FPDK+ VPHTTR R E +GR Y+F+S E M DI A++++E G + +YGT
Sbjct: 130 SEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 189
Query: 174 LETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EK 228
++++R + ++GK ILDV A++ L+ P +FI L+N+ + + + K
Sbjct: 190 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 249
Query: 229 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPV 276
+ L+ + F V + EE +++ IE+L W+P
Sbjct: 250 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPA 297
>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95
Length = 295
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 38/288 (13%)
Query: 1 MFQIISKDDHNWWQARK---DNVAGSAGLIPSP---ELQEWRTACSTIDKTKHEQVNCSI 54
+ +I D WWQAR+ D+ G IPS E +EW K K +
Sbjct: 30 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRL-----KAKDWGSSSGS 84
Query: 55 FGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI 114
GR + +++YE V ++ + +++LG + + L+
Sbjct: 85 QGR------------------EDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLL 123
Query: 115 NKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTK 173
++FPDK+ VPHTTR R E +GR Y+F+S E M DI A++++E G + +YGT
Sbjct: 124 SEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTS 183
Query: 174 LETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EK 228
++++R + ++GK ILDV A++ L+ P +FI L+N+ + + + K
Sbjct: 184 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 243
Query: 229 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPV 276
+ L+ + F V + EE +++ IE+L W+P
Sbjct: 244 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPA 291
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 133/288 (46%), Gaps = 38/288 (13%)
Query: 1 MFQIISKDDHNWWQARK---DNVAGSAGLIPSP---ELQEWRTACSTIDKTKHEQVNCSI 54
+ +I D WWQAR+ D+ G IPS E +EW K K +
Sbjct: 456 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRL-----KAKDWGSSSGS 510
Query: 55 FGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI 114
GR + +++YE V ++ + +++LG + + L+
Sbjct: 511 QGR------------------EDSVLSYETVTQMEVHYARPIIILGPT---KDRANDDLL 549
Query: 115 NKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTK 173
++FPDK+ VPHTTR R E +GR Y+F+S E M DI A++++E G + +YGT
Sbjct: 550 SEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTS 609
Query: 174 LETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EK 228
++++R + ++GK ILDV A++ L+ P +FI L+N+ + + + K
Sbjct: 610 VQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARK 669
Query: 229 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPV 276
+ L+ + F V + EE +++ IE+L W+P
Sbjct: 670 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPA 717
>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex
With Gmp And Adp
Length = 198
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 97/183 (53%), Gaps = 10/183 (5%)
Query: 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
+ +VL G G G+ + L + + + V HTTR+PR EE+G+ YYF++ + M D
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAA 213
IAA ++E+ +YGT E +R + +I +LDV+ Q ++ ++ + P +F+
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 214 PQLQNL--------SDYDGSLEK--LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKA 263
P L L ++ + SL K A +D+ S FDL ++N+D+++ L++A
Sbjct: 125 PSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQA 184
Query: 264 IEE 266
+ E
Sbjct: 185 LSE 187
>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold
Proteins As Specific Phospho-Protein Binding Modules
Length = 296
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 135/285 (47%), Gaps = 41/285 (14%)
Query: 1 MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGR 57
+ +I+ D WWQAR+ D + G+IPS ++K + ++ F
Sbjct: 40 ILHVINASDDEWWQARQVTPDGESDEVGVIPSKR---------RVEKKERARLKTVKFNS 90
Query: 58 XXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF 117
+++YE V + + +++LG + + + LI++F
Sbjct: 91 K--------------------VLSYEPVNQQEVNYTRPVIILGPM---KDRVNDDLISEF 127
Query: 118 PDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAANQYLEYGTHEDAMYGTKLET 176
PDK+ VPHTTR R E +GR Y+F+ S ++M DI ++++E G + + +YGT +++
Sbjct: 128 PDKFGSCVPHTTRPKRDYEVDGRDYHFVTSREQMEKDIQEHKFIEAGQYNNHLYGTSVQS 187
Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EKLAK 231
+R + ++GK ILDV A+K L+ + P +FI ++N+ + + L K +
Sbjct: 188 VRAVAEKGKHCILDVSGNAIKRLQIAQLYPISIFIKPKSMENIMEMNKRLTDEQARKTFE 247
Query: 232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPV 276
+ L+ + F V + +E+ +++ IEE W+P
Sbjct: 248 RAVRLEQEFTEHFTAIVQGDTLEDIYNQVKQIIEEQSGPYIWVPA 292
>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins
Length = 292
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 130/284 (45%), Gaps = 41/284 (14%)
Query: 1 MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGR 57
+ + + D WWQAR+ DN G++PS + W D++ + N
Sbjct: 34 ILHVTNASDDEWWQARRVLGDNEDEQIGIVPSK--RRWERKMRARDRSVKSEEN------ 85
Query: 58 XXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF 117
+++YE V +L + +++LG + I + LI+++
Sbjct: 86 ---------------------VLSYEAVQRLSINYTRPVIILGPL---KDRINDDLISEY 121
Query: 118 PDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTKLET 176
PDK+ VPHTTR R E +GR Y+F+S E M DI + ++E G + D +YGT + +
Sbjct: 122 PDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVAS 181
Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSL-----EKLAK 231
+R + ++GK ILDV A+K L+ + P VFI + ++ + + + +K +
Sbjct: 182 VREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYE 241
Query: 232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIP 275
+ ++ + +F V + IEE ++ I W+P
Sbjct: 242 RAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVP 285
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
+ +V+ G G G+ + L ++PD + + VP TTR+PR+ E NG+ Y F+S DE S
Sbjct: 18 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVPSTTRTPRAGEVNGKDYNFVSVDEFKSM 77
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRT-GEFSPFVVFIA 212
I N+++E+ YG+ + +++++ + GK ILD++ Q +K ++ E + +FIA
Sbjct: 78 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 137
Query: 213 APQLQNL 219
P +++L
Sbjct: 138 PPSVEDL 144
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
+ +V+ G G G+ + L ++PD + + V TTR+PR+ E NG+ Y F+S DE S
Sbjct: 3 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 62
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRT-GEFSPFVVFIA 212
I N+++E+ YG+ + +++++ + GK ILD++ Q +K ++ E + +FIA
Sbjct: 63 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 122
Query: 213 APQLQNL 219
P +++L
Sbjct: 123 PPSVEDL 129
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
+ +V+ G G G+ + L ++PD + + V TTR+PR+ E NG+ Y F+S DE S
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRT-GEFSPFVVFIA 212
I N+++E+ YG+ + +++++ + GK ILD++ Q +K ++ E + +FIA
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 213 APQLQNL 219
P +++L
Sbjct: 122 PPSVEDL 128
>pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|B Chain B, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|C Chain C, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
pdb|2J41|D Chain D, Crystal Structure Of Staphylococcus Aureus Guanylate
Monophosphate Kinase
Length = 207
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 7/190 (3%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
+VL G GVG+ ++ + Y Y + TTR R E +G Y+F + D + I
Sbjct: 9 IVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIK 68
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215
+Q++EY + YGT ++ ++ EG L++E + K +R +F+A P
Sbjct: 69 DDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS 128
Query: 216 LQNLSDY-----DGSLEKLAKESDILKSAYE--HFFDLTVVNNDIEETIGILEKAIEELH 268
L++L + S EK+ + + E + +D VVN+++E ++ +E H
Sbjct: 129 LEHLRERLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIVEAEH 188
Query: 269 TTPQWIPVSW 278
+ + +
Sbjct: 189 LKRERVEAKY 198
>pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase
Length = 204
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
LV+ G GVG+ + ++++FP ++ + + TTR+ R E NG YYF+ D+ +
Sbjct: 15 LVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK 74
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEF--SPFVVFIAA 213
Q+LE+ + + YGT EGKI + + +K L+ + +F+
Sbjct: 75 EGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEXNINGVKQLKESKHIQDGIYIFVKP 134
Query: 214 P-------QLQNLS-----DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILE 261
P +L+N + + + ++L +E D A + F+ +VN+D+ T L
Sbjct: 135 PSIDILLGRLKNRNTEKPEEINKRXQELTREXD---EADKVGFNYFIVNDDLARTYAELR 191
Query: 262 KAIEELHTTPQW 273
+ + L + PQ
Sbjct: 192 EYL--LGSYPQL 201
>pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium
Falciparum
Length = 218
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 11/172 (6%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
LV+ G GVG+ + L+N+FP+ + + V TTR R E+ G YYFI +
Sbjct: 26 LVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEF--SPFVVFIAA 213
+LEY + + YGT + ++ KI + ++ +K L+ + +FI
Sbjct: 86 NEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKP 145
Query: 214 PQ--------LQNLSDYDGSLEKLAKESDI-LKSAYEHFFDLTVVNNDIEET 256
P L ++ ++K ++ +I L A F+L+++N+D+ T
Sbjct: 146 PSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLT 197
>pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
pdb|3TAU|B Chain B, Crystal Structure Of A Putative Guanylate Monophosphaste
Kinase From Listeria Monocytogenes Egd-E
Length = 208
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
+VL G GVG+ ++ + + Y + TTR PR E++G YYF S + I
Sbjct: 11 IVLSGPSGVGKGTVREAVFKDPETSFDYSISXTTRLPREGEQDGVDYYFRSREVFEQAIK 70
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215
+ LEY + YGT LE + G L++E Q +R +F+ P
Sbjct: 71 DGKXLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAXQVRKAXPEGIFIFLTPPD 130
Query: 216 LQNLSD 221
L L +
Sbjct: 131 LSELKN 136
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 95 TLVLLGA-HGVGRRHIKNTLINKFP-DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS 152
TL ++ A G G+ + L+ P V HTTR PR E +G Y+F++HDE
Sbjct: 17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 76
Query: 153 DIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIA 212
I+ + +LE+ YGT E I ++ G LD++ Q + +R +FI
Sbjct: 77 XISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKXPHARSIFIL 136
Query: 213 APQLQNLSDY-----DGSLEKLAKESDILKSAYEHF--FDLTVVNNDIEETIGILEKAI- 264
P L S E +AK + H+ +D +VN+D + + L+ I
Sbjct: 137 PPSKIELDRRLRGRGQDSEEVIAKRXAQAVAEXSHYAEYDYLIVNDDFDTALTDLKTIIR 196
Query: 265 -EELHTTPQ 272
E L + Q
Sbjct: 197 AERLRXSRQ 205
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 11/189 (5%)
Query: 95 TLVLLGA-HGVGRRHIKNTLINKFP-DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS 152
TL ++ A G G+ + L+ P V HTTR PR E +G Y+F++HDE
Sbjct: 5 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 64
Query: 153 DIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIA 212
I+ + +LE+ YGT E I ++ G LD++ Q + +R +FI
Sbjct: 65 MISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFIL 124
Query: 213 APQLQNLSDY-----DGSLEKLAKESDILKSAYEHF--FDLTVVNNDIEETIGILEKAI- 264
P L S E +AK + H+ +D +VN+D + + L+ I
Sbjct: 125 PPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIR 184
Query: 265 -EELHTTPQ 272
E L + Q
Sbjct: 185 AERLRMSRQ 193
>pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
pdb|3LNC|B Chain B, Crystal Structure Of Guanylate Kinase From Anaplasma
Phagocytophilum
Length = 231
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
LVL G G+ + N L+ K + V TTR+ R E+ G+ YYF+ +E + +
Sbjct: 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIAAP 214
+ +E+ YG + + +G +L ++ Q A K + +FI P
Sbjct: 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPP 149
Query: 215 QLQNLSDYDGSLEKLAKESDILK-----SAYE----HFFDLTVVNNDIEET 256
++ L + A +S++++ +A+E +D +VN DIEET
Sbjct: 150 SMEELRRR--LCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEET 198
>pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From
Mycobacterium Tuberculosis (Rv1389)
Length = 228
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 89 PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHD 148
P+ + +VL G VG+ + L + P+ + + V TTR PR E +G Y+FI
Sbjct: 19 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRCPRPGEVDGVDYHFIDPT 77
Query: 149 EMMSDIAANQYLEYGTHEDAMY--GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP 206
I + LE+ ++ GT + +R G +++V+ + ++
Sbjct: 78 RFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA 137
Query: 207 FVVFIAAPQLQNLSDYDGSLEKLAKESDILKS---------AYEHFFDLTVVNNDIEETI 257
VF+A P Q+L + + + +D+++ A + FD VVN +E
Sbjct: 138 VTVFLAPPSWQDLQAR--LIGRGCETADVIQRRLDTARIELAAQGDFDKVVVNRRLESAC 195
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 89 PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHD 148
P+ + +VL G VG+ + L + P+ + + V TTR+PR E +G Y+FI
Sbjct: 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRAPRPGEVDGVDYHFIDPT 74
Query: 149 EMMSDIAANQYLEYGTHEDAMY--GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP 206
I + LE+ ++ GT + +R G +++V+ + ++
Sbjct: 75 RFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA 134
Query: 207 FVVFIAAPQLQNLSDYDGSLEKLAKESDILKS---------AYEHFFDLTVVNNDIE 254
VF+A P Q+L + + + +D+++ A + FD VVN +E
Sbjct: 135 VTVFLAPPSWQDLQAR--LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE 189
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 89 PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHD 148
P+ + +VL G VG+ + L + P+ + + V TTR+PR E +G Y+FI
Sbjct: 19 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSATTRAPRPGEVDGVDYHFIDPT 77
Query: 149 EMMSDIAANQYLEYGTHEDAMY--GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP 206
I + LE+ ++ GT + +R G +++V+ + ++
Sbjct: 78 RFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA 137
Query: 207 FVVFIAAPQLQNLSDYDGSLEKLAKESDILKS---------AYEHFFDLTVVNNDIE 254
VF+A P Q+L + + + +D+++ A + FD VVN +E
Sbjct: 138 VTVFLAPPSWQDLQAR--LIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE 192
>pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii
Length = 205
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM 151
K ++ G G+ + L+ + + HTTR R ++ G Y+FI
Sbjct: 6 KANLFIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFIDETRFQ 64
Query: 152 SDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFI 211
+ + +LE+ T + YGT+ + + R + G+ +L+++ Q + +R +FI
Sbjct: 65 AXVKEGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFI 124
Query: 212 AAPQLQNL--------SDYDGSLEK---LAKESDILKSAYEHFFDLTVVNNDIEETI 257
P ++ L D +E+ LA+E + A+ FD VVN++ ++ +
Sbjct: 125 LPPSIEALRERLIKRRQDDTAIIEQRLALARE----EXAHYKEFDYLVVNDNFDQAV 177
>pdb|3LH5|A Chain A, Crystal Structure Of The Sh3-Guanylate Kinase Core Domain
Of Zo-1
Length = 251
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAA 213
IA ++ + GT + + +L TI++I + K A+LDV P A+ L ++ P VVF+
Sbjct: 119 IAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNP 178
Query: 214 PQLQNLS--------DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEET-IGILEKAI 264
Q + + S KL + S L+ H F T+ N + + G L++AI
Sbjct: 179 DSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAI 238
Query: 265 EELHTTPQWI 274
++ W+
Sbjct: 239 QQQQNQLVWV 248
>pdb|3KFV|A Chain A, Crystal Structure Of The Sh3-Kinase Fragment Of Tight
Junction Protein 3 (Tjp3) In Apo-Form
Length = 308
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 9/110 (8%)
Query: 173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFI---AAPQLQNLSDY-----DG 224
KL+T+R I ++ K A+LDV P A++ L ++ P VVF + P L+ L +
Sbjct: 187 KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRR 246
Query: 225 SLEKLAKESDILKSAYEHFFDLTVVNNDIEET-IGILEKAIEELHTTPQW 273
S +L ++ L+ H F T+ N +T L+ I E T P W
Sbjct: 247 STRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIW 296
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAA 213
IA ++ + GT + + +L TI++I + K A+LDV P A+ L ++ P VVF+
Sbjct: 259 IAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNP 318
Query: 214 PQLQNLS--------DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEET-IGILEKAI 264
Q + + S KL + S L+ H F T+ N + + G L++AI
Sbjct: 319 DSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAI 378
Query: 265 EELHTTPQWI 274
++ W+
Sbjct: 379 QQQQNQLVWV 388
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAA 213
IA ++ + GT + + +L TI++I + K A+LDV P A+ L ++ P VVF+
Sbjct: 251 IAKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNP 310
Query: 214 PQLQNLS--------DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEET-IGILEKAI 264
Q + + S KL + S L+ H F T+ N + + G L++AI
Sbjct: 311 DSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAI 370
Query: 265 EELHTTPQWI 274
++ W+
Sbjct: 371 QQQQNQLVWV 380
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFI 145
+ ++G VG+ + N ++NK P+P TTR P DE +GR Y F+
Sbjct: 183 VAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFV 233
>pdb|3QWY|A Chain A, Ced-2
pdb|3QWY|B Chain B, Ced-2
Length = 308
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 33
+I+SK + +WW+AR N G+ GL+P+ +Q
Sbjct: 172 LEILSKTNQDWWEAR--NALGTTGLVPANYVQ 201
>pdb|3QWX|X Chain X, Ced-2 1-174
Length = 174
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 33
+I+SK + +WW+AR N G+ GL+P+ +Q
Sbjct: 143 LEILSKTNQDWWEAR--NALGTTGLVPANYVQ 172
>pdb|2L2P|A Chain A, Folding Intermediate Of The Fyn Sh3 A39vN53PV55L FROM
NMR RELAXATION Dispersion Experiments
pdb|2LP5|A Chain A, Native Structure Of The Fyn Sh3 A39vN53PV55L
Length = 66
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32
FQI++ + +WW+ R G G IPSP L
Sbjct: 32 FQILNSSEGDWWEVRS-LTTGETGYIPSPYL 61
>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii
Length = 304
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 42
+ +I K + WW A ++ G G+IP P ++++R A +++
Sbjct: 158 ILRIRDKPEEQWWNA--EDSEGKRGMIPVPYVEKYRPASASV 197
>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I
Length = 204
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 42
+ +I K + WW A ++ G G+IP P ++++R A +++
Sbjct: 158 ILRIRDKPEEQWWNA--EDSEGKRGMIPVPYVEKYRPASASV 197
>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii
Length = 230
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 42
+ +I K + WW A ++ G G+IP P ++++R A +++
Sbjct: 160 ILRIRDKPEEQWWNA--EDSEGKRGMIPVPYVEKYRPASASV 199
>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase
Length = 78
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 42
+ +I K + WW A ++ G G+IP P ++++R A +++
Sbjct: 38 ILRIRDKPEEQWWNA--EDSEGKRGMIPVPYVEKYRPASASV 77
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFG 56
II K + WW AR N G G+IP P +++ + KH N + +G
Sbjct: 152 IIEKPEEQWWSAR--NKDGRVGMIPVPYVEKL---VRSSPHGKHGNRNSNSYG 199
>pdb|3LAZ|A Chain A, The Crystal Structure Of The N-Terminal Domain Of D-
Galactarate Dehydratase From Escherichia Coli Cft073
pdb|3LAZ|B Chain B, The Crystal Structure Of The N-Terminal Domain Of D-
Galactarate Dehydratase From Escherichia Coli Cft073
Length = 99
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 136 EENGRAYYFISHD-EMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ 194
+E A+Y HD + ++ I + L+ GT + LE I I Q K+A+LD+ P
Sbjct: 11 QETPTAFYIKVHDTDNVAIIVNDNGLKAGTR----FPDGLELIEHIPQGHKVALLDI-PA 65
Query: 195 ALKILRTGEFSPFVV 209
+I+R GE + V
Sbjct: 66 NGEIIRYGEVIGYAV 80
>pdb|2LQW|A Chain A, Solution Structure Of Phosphorylated Crkl
Length = 303
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFG 56
II K + WW AR N G G+IP P +++ + KH N + +G
Sbjct: 152 IIEKPEEQWWSAR--NKDGRVGMIPVPYVEKL---VRSSPHGKHGNRNSNSYG 199
>pdb|4AG2|C Chain C, Human Chymase - Fynomer Complex
pdb|4AG2|D Chain D, Human Chymase - Fynomer Complex
Length = 84
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI+ D +WW+AR G G IPS
Sbjct: 31 FQILDGDSGDWWEARS-LTTGETGYIPS 57
>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi
Sarcoma Viral (V-Yes) Oncogene Homolog 1
Length = 109
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQII+ + +WW+AR G +G IPS
Sbjct: 52 FQIINNTEGDWWEARSI-ATGKSGYIPS 78
>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain
Length = 295
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ +++KDD +WWQ + G GL PS
Sbjct: 42 LINVMNKDDPDWWQG---EINGVTGLFPS 67
>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain
Length = 79
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 30 FQILNSSEGDWWEARS-LTTGETGYIPS 56
>pdb|2HDA|A Chain A, Yes Sh3 Domain
Length = 64
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQII+ + +WW+AR G G IPS
Sbjct: 30 FQIINNTEGDWWEARSI-ATGKNGYIPS 56
>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Kinase Complexed With The Synthetic
Peptide P2l Corresponding To Residues 91-104 Of The P85
Subunit Of Pi3-Kinase, Minimized Average (Probmap)
Structure
pdb|1NYF|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Minimized Average (Probmap) Structure
pdb|1NYG|A Chain A, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase, Family Of 20 Structures
Length = 67
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 28 FQILNSSEGDWWEARS-LTTGETGYIPS 54
>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I
pdb|3H0I|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
pdb|3H0I|B Chain B, Human Fyn Sh3 Domain R96i Mutant, Crystal Form Ii
Length = 73
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 40 FQILNSSEGDWWEARS-LTTGETGYIPS 66
>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene
Tyrosine Kinase Complexed With The Synthetic Peptide
P2l Corresponding To Residues 91-104 Of The P85 Subunit
Of Pi3- Kinase, Family Of 25 Structures
Length = 69
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 30 FQILNSSEGDWWEARS-LTTGETGYIPS 56
>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain
Length = 57
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 25 FQILNSSEGDWWEARS-LTTGETGYIPS 51
>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA6|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain
pdb|3UA7|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|B Chain B, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|C Chain C, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
pdb|3UA7|D Chain D, Crystal Structure Of The Human Fyn Sh3 Domain In Complex
With A Peptide From The Hepatitis C Virus Ns5a-protein
Length = 64
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 30 FQILNSSEGDWWEARS-LTTGETGYIPS 56
>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX
Length = 61
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 26 FQILNSSEGDWWEARS-LTTGETGYIPS 52
>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1SHF|B Chain B, Crystal Structure Of The Sh3 Domain In Human Fyn;
Comparison Of The Three-Dimensional Structures Of Sh3
Domains In Tyrosine Kinases And Spectrin
pdb|1ZBJ|A Chain A, Inferential Structure Determination Of The Fyn Sh3
Domain Using Noesy Data From A 15n,H2 Enriched Protein
Length = 59
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 26 FQILNSSEGDWWEARS-LTTGETGYIPS 52
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1FYN|A Chain A, Phosphotransferase
Length = 62
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 29 FQILNSSEGDWWEARS-LTTGETGYIPS 55
>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of
Intersectin 2 (Kiaa1256)
Length = 98
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ +++KDD +WWQ + G GL PS
Sbjct: 58 LINVMNKDDPDWWQGE---INGVTGLFPS 83
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 165 REVVALMGAHALGKTHLKNS 184
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant
Length = 73
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 40 FQILNSSEGDWWEARS-LTTGETGYIPS 66
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn
Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn)
From Mus Musculus At 1.98 A Resolution
Length = 164
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 29 FQILNSSEGDWWEARS-LTTGETGYIPS 55
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2
pdb|1G83|B Chain B, Crystal Structure Of Fyn Sh3-Sh2
Length = 165
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 28 FQILNSSEGDWWEARS-LTTGETGYIPS 54
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 169 REVVALMGAHALGKTHLKNS 188
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 164 REVVALMGAHALGKTHLKNS 183
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 169 REVVALMGAHALGKTHLKNS 188
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
pdb|1EFN|C Chain C, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3
Domain
Length = 59
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 25 FQILNSSEGDWWEARS-LTTGETGYIPS 51
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 169 REVVALMGAHALGKTHLKNS 188
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 168 REVVALMGAHALGKTHLKNS 187
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 164 REVVALMGAHALGKTHLKNS 183
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 166 REVVALMGAHALGKTHLKNS 185
>pdb|4D8D|A Chain A, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
pdb|4D8D|C Chain C, Crystal Structure Of Hiv-1 Nef Fyn-sh3 R96w Variant
Length = 58
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 26 FQILNSSEGDWWEARS-LTTGETGYIPS 52
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 169 REVVALMGAHALGKTHLKNS 188
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 93 RKTLVLLGAHGVGRRHIKNT 112
R+ + L+GAH +G+ H+KN+
Sbjct: 163 REVVALMGAHALGKTHLKNS 182
>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
pdb|3JV3|B Chain B, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l
Length = 283
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ +++K+D +WW K V+G GL PS
Sbjct: 26 IINVLNKEDPDWW---KGEVSGQVGLFPS 51
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ I+ K+D +WW+AR + GS G IPS
Sbjct: 27 YIILEKNDLHWWRAR--DKYGSEGYIPS 52
>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|3SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
pdb|2SEM|B Chain B, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor
Length = 60
Score = 27.7 bits (60), Expect = 9.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+I+KDD NWW+ + +N G+ PS
Sbjct: 29 LINKDDPNWWEGQLNN---RRGIFPS 51
>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
pdb|1SEM|B Chain B, Structural Determinants Of Peptide-Binding Orientation
And Of Sequence Specificity In Sh3 Domains
Length = 58
Score = 27.7 bits (60), Expect = 9.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+I+KDD NWW+ + +N G+ PS
Sbjct: 29 LINKDDPNWWEGQLNN---RRGIFPS 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,132,752
Number of Sequences: 62578
Number of extensions: 407907
Number of successful extensions: 1194
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 125
length of query: 330
length of database: 14,973,337
effective HSP length: 99
effective length of query: 231
effective length of database: 8,778,115
effective search space: 2027744565
effective search space used: 2027744565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)