Query psy933
Match_columns 330
No_of_seqs 363 out of 1832
Neff 6.9
Searched_HMMs 46136
Date Sat Aug 17 00:34:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0609|consensus 100.0 9.4E-84 2E-88 630.3 20.2 294 1-330 245-542 (542)
2 COG0194 Gmk Guanylate kinase [ 100.0 9.9E-47 2.1E-51 330.1 18.2 172 92-267 3-183 (191)
3 PF00625 Guanylate_kin: Guanyl 100.0 5.6E-46 1.2E-50 329.0 18.1 175 93-267 2-183 (183)
4 PRK14737 gmk guanylate kinase; 100.0 2.1E-44 4.6E-49 320.7 19.4 171 92-265 3-183 (186)
5 smart00072 GuKc Guanylate kina 100.0 1.7E-43 3.6E-48 313.7 19.7 174 93-267 2-183 (184)
6 PLN02772 guanylate kinase 100.0 2.6E-42 5.6E-47 334.7 19.5 189 80-268 118-320 (398)
7 KOG0708|consensus 100.0 3E-38 6.5E-43 300.0 12.9 253 1-277 95-359 (359)
8 PRK14738 gmk guanylate kinase; 100.0 9.5E-34 2.1E-38 255.9 19.5 175 90-267 10-195 (206)
9 cd00071 GMPK Guanosine monopho 100.0 5.1E-33 1.1E-37 235.9 15.7 136 95-260 1-136 (137)
10 KOG0707|consensus 100.0 7.5E-34 1.6E-38 256.0 10.0 176 92-267 36-222 (231)
11 TIGR03263 guanyl_kin guanylate 100.0 3.2E-30 7E-35 226.4 19.5 170 93-265 1-179 (180)
12 PRK00300 gmk guanylate kinase; 100.0 1.7E-29 3.8E-34 226.3 19.0 174 92-268 4-186 (205)
13 PRK10078 ribose 1,5-bisphospho 99.8 4.2E-20 9.1E-25 163.9 13.2 169 92-271 1-181 (186)
14 TIGR02322 phosphon_PhnN phosph 99.8 3.8E-19 8.3E-24 156.1 16.2 163 94-266 2-178 (179)
15 PRK08356 hypothetical protein; 99.8 1.9E-19 4.2E-24 160.9 7.7 169 94-268 6-194 (195)
16 COG3709 Uncharacterized compon 99.7 2.8E-16 6.1E-21 135.0 14.8 168 91-267 3-183 (192)
17 KOG3580|consensus 99.7 8.3E-17 1.8E-21 159.9 12.1 233 11-280 541-792 (1027)
18 KOG3812|consensus 99.5 5.5E-14 1.2E-18 132.2 10.1 244 2-269 90-356 (475)
19 PRK00091 miaA tRNA delta(2)-is 99.4 6.4E-14 1.4E-18 133.9 5.0 90 92-191 3-100 (307)
20 cd00227 CPT Chloramphenicol (C 99.2 2.2E-11 4.7E-16 106.9 6.9 156 93-264 2-174 (175)
21 KOG0609|consensus 99.1 3.8E-11 8.3E-16 119.4 4.7 129 135-280 410-542 (542)
22 TIGR00174 miaA tRNA isopenteny 99.1 4.6E-11 1E-15 113.1 4.9 97 95-201 1-106 (287)
23 PRK04040 adenylate kinase; Pro 99.0 5E-09 1.1E-13 93.5 11.6 148 93-264 2-187 (188)
24 PLN02840 tRNA dimethylallyltra 98.9 6.5E-10 1.4E-14 110.0 4.2 90 93-192 21-118 (421)
25 PRK00698 tmk thymidylate kinas 98.9 9.3E-09 2E-13 91.5 9.9 162 93-267 3-203 (205)
26 PRK06762 hypothetical protein; 98.8 1.1E-07 2.4E-12 82.2 12.5 143 92-265 1-163 (166)
27 PRK00098 GTPase RsgA; Reviewed 98.7 1.1E-08 2.4E-13 97.6 3.4 94 92-186 163-277 (298)
28 PRK14729 miaA tRNA delta(2)-is 98.7 1.4E-08 2.9E-13 96.9 3.6 98 93-200 4-109 (300)
29 PRK05057 aroK shikimate kinase 98.6 4.4E-07 9.6E-12 79.7 12.0 25 93-117 4-28 (172)
30 PRK00131 aroK shikimate kinase 98.6 3.8E-07 8.2E-12 78.7 11.3 145 93-267 4-172 (175)
31 PLN02748 tRNA dimethylallyltra 98.6 2.7E-08 6E-13 100.0 3.8 92 92-193 21-120 (468)
32 COG0703 AroK Shikimate kinase 98.6 3.8E-07 8.2E-12 80.1 10.3 142 93-267 2-169 (172)
33 PRK13946 shikimate kinase; Pro 98.5 9.6E-07 2.1E-11 78.2 11.4 144 92-268 9-178 (184)
34 PLN02165 adenylate isopentenyl 98.5 8.2E-08 1.8E-12 92.6 3.3 94 90-193 40-142 (334)
35 PRK13947 shikimate kinase; Pro 98.4 2.1E-06 4.6E-11 74.4 10.8 24 95-118 3-26 (171)
36 COG0324 MiaA tRNA delta(2)-iso 98.4 1.6E-07 3.5E-12 89.5 3.8 91 93-193 3-101 (308)
37 PRK13948 shikimate kinase; Pro 98.4 3.9E-06 8.3E-11 74.7 12.0 140 93-266 10-175 (182)
38 PRK04182 cytidylate kinase; Pr 98.4 2E-06 4.4E-11 74.6 9.7 27 242-268 147-175 (180)
39 TIGR03574 selen_PSTK L-seryl-t 98.4 2E-06 4.4E-11 79.6 10.0 149 95-266 1-169 (249)
40 PRK00889 adenylylsulfate kinas 98.3 1.7E-06 3.8E-11 75.5 8.1 152 92-266 3-170 (175)
41 PRK01184 hypothetical protein; 98.3 7.1E-06 1.5E-10 72.2 11.7 85 184-268 80-180 (184)
42 cd01672 TMPK Thymidine monopho 98.3 2.3E-06 4.9E-11 75.2 8.2 86 94-190 1-92 (200)
43 PF13671 AAA_33: AAA domain; P 98.3 8.4E-07 1.8E-11 74.2 5.0 97 95-214 1-107 (143)
44 PRK14530 adenylate kinase; Pro 98.3 2.4E-05 5.3E-10 70.8 14.7 166 93-266 3-213 (215)
45 PRK08233 hypothetical protein; 98.3 1.2E-05 2.7E-10 69.9 12.2 25 94-118 4-28 (182)
46 TIGR01313 therm_gnt_kin carboh 98.3 5E-06 1.1E-10 71.6 9.4 23 96-118 1-23 (163)
47 PHA02530 pseT polynucleotide k 98.3 4.4E-06 9.4E-11 79.1 9.6 104 93-219 2-116 (300)
48 PRK05541 adenylylsulfate kinas 98.3 6.9E-06 1.5E-10 71.8 9.9 27 92-118 6-32 (176)
49 KOG1384|consensus 98.2 1.4E-06 3E-11 83.1 5.5 101 92-202 6-115 (348)
50 PRK13949 shikimate kinase; Pro 98.2 1.6E-05 3.5E-10 69.7 10.7 24 94-117 2-25 (169)
51 TIGR00235 udk uridine kinase. 98.2 8.2E-06 1.8E-10 73.5 9.0 28 91-118 4-31 (207)
52 PRK03731 aroL shikimate kinase 98.2 1.2E-05 2.5E-10 69.9 9.3 24 94-117 3-26 (171)
53 TIGR02173 cyt_kin_arch cytidyl 98.1 1.7E-05 3.7E-10 68.3 9.8 23 95-117 2-24 (171)
54 COG1102 Cmk Cytidylate kinase 98.1 2E-05 4.3E-10 68.5 9.7 148 95-269 2-175 (179)
55 PRK03846 adenylylsulfate kinas 98.1 5E-05 1.1E-09 67.9 12.6 161 82-266 14-192 (198)
56 TIGR01360 aden_kin_iso1 adenyl 98.1 1.4E-05 3E-10 70.0 8.8 25 93-117 3-27 (188)
57 PRK05480 uridine/cytidine kina 98.1 3.4E-05 7.4E-10 69.3 11.6 27 92-118 5-31 (209)
58 PRK00081 coaE dephospho-CoA ki 98.1 2.8E-06 6E-11 76.0 4.2 165 94-266 3-193 (194)
59 TIGR00455 apsK adenylylsulfate 98.1 2.3E-05 5E-10 69.0 9.8 150 92-263 17-183 (184)
60 cd00464 SK Shikimate kinase (S 98.1 1.3E-05 2.9E-10 67.8 7.8 24 95-118 1-24 (154)
61 PRK08154 anaerobic benzoate ca 98.1 4.9E-05 1.1E-09 72.9 12.2 147 91-269 131-304 (309)
62 PRK14021 bifunctional shikimat 98.0 3.4E-05 7.4E-10 79.5 10.5 147 90-266 3-176 (542)
63 PRK14532 adenylate kinase; Pro 98.0 9.1E-05 2E-09 65.3 11.9 24 95-118 2-25 (188)
64 PRK03839 putative kinase; Prov 98.0 0.00016 3.4E-09 63.4 13.0 23 95-117 2-24 (180)
65 PRK06696 uridine kinase; Valid 98.0 1.1E-05 2.4E-10 73.6 5.9 27 92-118 21-47 (223)
66 PLN02200 adenylate kinase fami 98.0 0.00014 3E-09 67.2 12.9 41 78-118 27-68 (234)
67 PRK12339 2-phosphoglycerate ki 98.0 0.00011 2.3E-09 66.2 12.0 25 93-117 3-27 (197)
68 cd02023 UMPK Uridine monophosp 97.9 3.6E-05 7.7E-10 68.6 8.3 24 95-118 1-24 (198)
69 PF03193 DUF258: Protein of un 97.9 7.8E-06 1.7E-10 71.3 3.9 93 92-186 34-148 (161)
70 PRK14531 adenylate kinase; Pro 97.9 0.00013 2.8E-09 64.5 11.1 26 92-117 1-26 (183)
71 cd01895 EngA2 EngA2 subfamily. 97.9 0.00035 7.6E-09 59.0 13.4 57 94-151 3-61 (174)
72 PRK00625 shikimate kinase; Pro 97.9 9.2E-05 2E-09 65.3 9.9 23 95-117 2-24 (173)
73 PRK05416 glmZ(sRNA)-inactivati 97.9 0.00024 5.3E-09 67.6 13.4 22 93-114 6-27 (288)
74 TIGR00041 DTMP_kinase thymidyl 97.9 6.8E-05 1.5E-09 66.3 8.9 26 93-118 3-28 (195)
75 PF07931 CPT: Chloramphenicol 97.9 6.7E-05 1.4E-09 66.3 8.3 150 93-264 1-173 (174)
76 PRK05537 bifunctional sulfate 97.9 7.5E-05 1.6E-09 77.4 10.0 150 92-266 391-562 (568)
77 PLN02924 thymidylate kinase 97.8 0.00019 4.1E-09 65.7 11.4 162 91-267 14-204 (220)
78 COG1132 MdlB ABC-type multidru 97.8 2.3E-05 4.9E-10 81.0 5.1 79 92-183 354-441 (567)
79 PRK13975 thymidylate kinase; P 97.8 0.00027 5.9E-09 62.5 11.3 27 92-118 1-27 (196)
80 PLN02199 shikimate kinase 97.8 0.00024 5.1E-09 67.7 11.3 26 92-117 101-126 (303)
81 PRK12298 obgE GTPase CgtA; Rev 97.8 0.00051 1.1E-08 68.1 14.0 53 95-149 161-216 (390)
82 PRK14731 coaE dephospho-CoA ki 97.8 1.2E-05 2.6E-10 72.8 2.2 27 242-268 177-204 (208)
83 cd02021 GntK Gluconate kinase 97.8 0.00014 3E-09 61.6 8.6 23 95-117 1-23 (150)
84 COG1116 TauB ABC-type nitrate/ 97.8 0.00044 9.6E-09 64.1 12.2 151 90-258 26-196 (248)
85 TIGR02868 CydC thiol reductant 97.7 2.4E-05 5.3E-10 80.0 4.2 77 92-182 360-445 (529)
86 TIGR01359 UMP_CMP_kin_fam UMP- 97.7 0.00031 6.8E-09 61.4 10.7 24 95-118 1-24 (183)
87 PRK13976 thymidylate kinase; P 97.7 0.00028 6.1E-09 64.1 10.3 39 95-133 2-40 (209)
88 TIGR00436 era GTP-binding prot 97.7 0.0005 1.1E-08 64.5 12.0 38 95-133 2-39 (270)
89 PRK14730 coaE dephospho-CoA ki 97.7 0.00016 3.4E-09 64.9 8.1 23 94-116 2-24 (195)
90 PRK05506 bifunctional sulfate 97.7 0.00013 2.8E-09 76.6 8.7 152 92-266 459-628 (632)
91 PRK14527 adenylate kinase; Pro 97.7 0.0002 4.4E-09 63.5 8.6 27 92-118 5-31 (191)
92 PTZ00265 multidrug resistance 97.7 5.1E-05 1.1E-09 86.4 5.6 91 92-182 1193-1333(1466)
93 COG1162 Predicted GTPases [Gen 97.7 2.6E-05 5.7E-10 74.1 2.7 90 92-187 163-278 (301)
94 cd01896 DRG The developmentall 97.6 0.001 2.2E-08 61.3 13.1 52 95-148 2-55 (233)
95 PRK11174 cysteine/glutathione 97.6 4.6E-05 1E-09 78.9 4.5 79 92-182 375-460 (588)
96 PRK14732 coaE dephospho-CoA ki 97.6 0.00011 2.4E-09 66.0 6.3 62 205-268 122-192 (196)
97 PRK07261 topology modulation p 97.6 0.00018 4E-09 63.0 7.6 23 95-117 2-24 (171)
98 KOG0058|consensus 97.6 3E-05 6.5E-10 80.7 2.8 78 92-182 493-576 (716)
99 COG4619 ABC-type uncharacteriz 97.6 7.4E-05 1.6E-09 65.7 4.6 51 92-155 28-80 (223)
100 PF06414 Zeta_toxin: Zeta toxi 97.6 0.00035 7.6E-09 62.5 9.0 103 92-214 14-130 (199)
101 PRK04220 2-phosphoglycerate ki 97.6 0.00095 2.1E-08 63.8 12.3 25 94-118 93-117 (301)
102 PF01926 MMR_HSR1: 50S ribosom 97.6 7.4E-05 1.6E-09 60.5 4.0 53 96-149 2-56 (116)
103 PRK14733 coaE dephospho-CoA ki 97.6 0.00038 8.1E-09 63.1 8.9 29 240-268 170-200 (204)
104 TIGR03797 NHPM_micro_ABC2 NHPM 97.6 7.1E-05 1.5E-09 79.1 4.6 78 92-182 478-563 (686)
105 PF08433 KTI12: Chromatin asso 97.5 0.00024 5.1E-09 67.1 7.5 151 94-265 2-170 (270)
106 PRK08099 bifunctional DNA-bind 97.5 0.0027 5.8E-08 63.2 15.2 156 90-268 216-394 (399)
107 COG3842 PotA ABC-type spermidi 97.5 0.00014 3.1E-09 70.9 6.0 25 92-116 30-54 (352)
108 PRK11176 lipid transporter ATP 97.5 9.9E-05 2.1E-09 76.3 5.2 78 92-182 368-455 (582)
109 PRK00279 adk adenylate kinase; 97.5 0.00085 1.8E-08 60.7 10.3 24 95-118 2-25 (215)
110 PTZ00451 dephospho-CoA kinase; 97.5 0.00036 7.9E-09 64.9 8.0 86 185-274 118-216 (244)
111 COG1160 Predicted GTPases [Gen 97.5 0.0017 3.6E-08 64.8 12.9 91 93-193 178-270 (444)
112 COG0563 Adk Adenylate kinase a 97.5 0.0017 3.8E-08 57.5 11.9 24 95-118 2-25 (178)
113 PRK06761 hypothetical protein; 97.5 0.00019 4.2E-09 68.0 6.1 63 93-158 3-67 (282)
114 COG4639 Predicted kinase [Gene 97.5 0.0012 2.6E-08 57.1 10.4 133 93-254 2-152 (168)
115 cd01898 Obg Obg subfamily. Th 97.5 0.0024 5.1E-08 54.4 12.3 52 96-149 3-57 (170)
116 KOG3354|consensus 97.5 0.00067 1.4E-08 58.8 8.5 80 94-193 13-93 (191)
117 PF13207 AAA_17: AAA domain; P 97.5 0.0001 2.2E-09 59.9 3.5 23 95-117 1-23 (121)
118 TIGR00958 3a01208 Conjugate Tr 97.5 0.0001 2.2E-09 78.4 4.4 78 92-182 506-592 (711)
119 COG0486 ThdF Predicted GTPase 97.5 0.00038 8.1E-09 69.6 8.0 88 93-193 217-306 (454)
120 PLN02422 dephospho-CoA kinase 97.5 0.00034 7.4E-09 64.6 7.2 33 241-273 168-201 (232)
121 PRK00089 era GTPase Era; Revie 97.5 0.0017 3.7E-08 61.3 12.2 54 94-148 6-61 (292)
122 TIGR00157 ribosome small subun 97.5 8.6E-05 1.9E-09 69.0 3.3 92 92-186 119-232 (245)
123 PRK06217 hypothetical protein; 97.4 0.00039 8.5E-09 61.3 7.3 23 95-117 3-25 (183)
124 KOG1191|consensus 97.4 0.00026 5.6E-09 71.0 6.4 89 93-193 268-358 (531)
125 cd02027 APSK Adenosine 5'-phos 97.4 0.00064 1.4E-08 58.2 7.9 23 95-117 1-23 (149)
126 TIGR00017 cmk cytidylate kinas 97.4 0.0014 3.1E-08 59.8 10.6 26 93-118 2-27 (217)
127 TIGR01351 adk adenylate kinase 97.4 0.001 2.2E-08 59.9 9.5 22 96-117 2-23 (210)
128 TIGR00152 dephospho-CoA kinase 97.4 0.00036 7.9E-09 61.7 6.3 23 95-117 1-23 (188)
129 COG4988 CydD ABC-type transpor 97.4 0.00019 4.1E-09 73.3 4.9 79 92-183 346-433 (559)
130 TIGR01526 nadR_NMN_Atrans nico 97.4 0.0016 3.6E-08 62.9 11.2 26 93-118 162-187 (325)
131 PRK13973 thymidylate kinase; P 97.4 0.0015 3.2E-08 59.2 10.2 39 93-133 3-41 (213)
132 PRK12338 hypothetical protein; 97.4 0.0013 2.8E-08 63.5 10.2 25 94-118 5-29 (319)
133 TIGR01193 bacteriocin_ABC ABC- 97.3 0.00013 2.9E-09 77.3 3.5 67 92-171 499-571 (708)
134 cd02019 NK Nucleoside/nucleoti 97.3 0.00084 1.8E-08 49.9 6.7 23 95-117 1-23 (69)
135 PRK13657 cyclic beta-1,2-gluca 97.3 0.00022 4.7E-09 74.1 4.6 67 92-171 360-432 (588)
136 cd01852 AIG1 AIG1 (avrRpt2-ind 97.3 0.0049 1.1E-07 54.7 12.7 54 95-150 2-59 (196)
137 TIGR03796 NHPM_micro_ABC1 NHPM 97.3 0.00016 3.6E-09 76.6 3.7 78 92-182 504-590 (710)
138 COG2274 SunT ABC-type bacterio 97.3 0.00011 2.4E-09 77.9 2.3 77 92-181 498-580 (709)
139 PRK03003 GTP-binding protein D 97.3 0.0032 7E-08 63.9 12.8 57 93-150 211-269 (472)
140 TIGR03375 type_I_sec_LssB type 97.3 0.0002 4.2E-09 75.9 3.9 77 92-181 490-575 (694)
141 COG1936 Predicted nucleotide k 97.3 0.0041 9E-08 54.8 11.4 20 95-114 2-21 (180)
142 PRK13808 adenylate kinase; Pro 97.3 0.0042 9.1E-08 60.3 12.7 23 96-118 3-25 (333)
143 PRK14734 coaE dephospho-CoA ki 97.3 0.00053 1.2E-08 61.7 6.1 29 241-269 168-197 (200)
144 PRK11160 cysteine/glutathione 97.3 0.00025 5.5E-09 73.5 4.5 78 92-182 365-451 (574)
145 COG0572 Udk Uridine kinase [Nu 97.3 0.00056 1.2E-08 62.4 6.2 27 94-120 9-35 (218)
146 cd01894 EngA1 EngA1 subfamily. 97.3 0.0036 7.9E-08 52.1 10.8 51 97-148 1-53 (157)
147 PRK10790 putative multidrug tr 97.3 0.00024 5.2E-09 73.7 4.3 78 92-182 366-451 (592)
148 PRK12288 GTPase RsgA; Reviewed 97.3 0.00011 2.4E-09 71.7 1.6 44 93-137 205-255 (347)
149 TIGR02857 CydD thiol reductant 97.2 0.00028 6E-09 72.2 4.4 64 92-168 347-415 (529)
150 TIGR01663 PNK-3'Pase polynucle 97.2 0.0014 3.1E-08 67.3 9.5 84 91-214 367-457 (526)
151 cd02022 DPCK Dephospho-coenzym 97.2 0.00025 5.4E-09 62.4 3.4 21 95-115 1-21 (179)
152 PRK13477 bifunctional pantoate 97.2 0.0063 1.4E-07 62.4 13.9 27 92-118 283-309 (512)
153 COG1618 Predicted nucleotide k 97.2 0.0024 5.2E-08 55.7 9.3 27 94-120 6-32 (179)
154 cd04163 Era Era subfamily. Er 97.2 0.0098 2.1E-07 49.4 13.0 23 94-116 4-26 (168)
155 KOG0057|consensus 97.2 0.00014 3.1E-09 73.7 2.0 84 92-187 377-464 (591)
156 PRK02496 adk adenylate kinase; 97.2 0.0021 4.6E-08 56.4 9.2 24 95-118 3-26 (184)
157 cd04171 SelB SelB subfamily. 97.2 0.005 1.1E-07 51.7 11.1 23 95-117 2-24 (164)
158 TIGR02203 MsbA_lipidA lipid A 97.2 0.00034 7.4E-09 72.1 4.6 78 92-182 357-444 (571)
159 cd01855 YqeH YqeH. YqeH is an 97.2 0.0004 8.8E-09 61.3 4.3 53 93-146 127-186 (190)
160 PRK00023 cmk cytidylate kinase 97.2 0.0014 3E-08 60.1 7.8 25 94-118 5-29 (225)
161 PRK09825 idnK D-gluconate kina 97.2 0.0065 1.4E-07 53.5 11.7 26 93-118 3-28 (176)
162 TIGR02204 MsbA_rel ABC transpo 97.2 0.0004 8.8E-09 71.7 4.5 77 92-181 365-450 (576)
163 COG1159 Era GTPase [General fu 97.2 0.0051 1.1E-07 58.4 11.4 168 95-286 8-190 (298)
164 TIGR03594 GTPase_EngA ribosome 97.1 0.0073 1.6E-07 60.0 13.3 157 95-267 174-346 (429)
165 COG3172 NadR Predicted ATPase/ 97.1 0.011 2.3E-07 51.7 12.2 157 90-270 5-184 (187)
166 cd04160 Arfrp1 Arfrp1 subfamil 97.1 0.0066 1.4E-07 51.5 11.0 23 96-118 2-24 (167)
167 KOG0056|consensus 97.1 0.00025 5.4E-09 71.3 2.5 84 92-186 563-650 (790)
168 COG1160 Predicted GTPases [Gen 97.1 0.00093 2E-08 66.6 6.3 57 94-151 4-62 (444)
169 COG0218 Predicted GTPase [Gene 97.1 0.00058 1.2E-08 61.4 4.4 54 86-139 17-70 (200)
170 COG2019 AdkA Archaeal adenylat 97.1 0.0017 3.7E-08 57.0 7.2 25 93-117 4-28 (189)
171 cd01897 NOG NOG1 is a nucleola 97.1 0.00064 1.4E-08 57.9 4.6 54 94-149 1-56 (168)
172 KOG0055|consensus 97.1 0.00023 5.1E-09 78.2 2.3 77 92-181 1015-1097(1228)
173 PRK07933 thymidylate kinase; V 97.1 0.013 2.9E-07 53.1 13.4 37 95-133 2-38 (213)
174 PRK10789 putative multidrug tr 97.1 0.00053 1.1E-08 71.0 4.7 64 92-168 340-408 (569)
175 PF00004 AAA: ATPase family as 97.1 0.0013 2.8E-08 53.5 6.1 22 96-117 1-22 (132)
176 COG1163 DRG Predicted GTPase [ 97.1 0.0062 1.3E-07 58.6 11.3 55 94-150 64-120 (365)
177 PRK05291 trmE tRNA modificatio 97.1 0.0056 1.2E-07 61.9 11.7 54 94-148 216-271 (449)
178 cd04139 RalA_RalB RalA/RalB su 97.1 0.021 4.6E-07 47.9 13.6 22 95-116 2-23 (164)
179 PRK14526 adenylate kinase; Pro 97.1 0.011 2.5E-07 53.7 12.6 23 96-118 3-25 (211)
180 COG1136 SalX ABC-type antimicr 97.1 0.00069 1.5E-08 62.2 4.6 26 91-116 29-54 (226)
181 PRK00093 GTP-binding protein D 97.0 0.009 2E-07 59.6 12.9 56 94-150 174-231 (435)
182 PRK12297 obgE GTPase CgtA; Rev 97.0 0.0092 2E-07 59.9 12.8 51 95-147 160-213 (424)
183 COG1120 FepC ABC-type cobalami 97.0 0.00047 1E-08 64.5 3.4 27 92-118 27-53 (258)
184 cd01881 Obg_like The Obg-like 97.0 0.0015 3.2E-08 55.8 6.2 50 98-149 1-53 (176)
185 PRK12337 2-phosphoglycerate ki 97.0 0.0034 7.5E-08 63.3 9.5 27 92-118 254-280 (475)
186 PRK13974 thymidylate kinase; P 97.0 0.01 2.3E-07 53.6 11.9 27 93-119 3-29 (212)
187 cd01863 Rab18 Rab18 subfamily. 97.0 0.014 3E-07 49.2 12.0 22 95-116 2-23 (161)
188 TIGR02729 Obg_CgtA Obg family 97.0 0.0086 1.9E-07 58.1 12.0 41 95-137 159-199 (329)
189 PRK12296 obgE GTPase CgtA; Rev 97.0 0.0064 1.4E-07 62.1 11.5 53 95-149 161-215 (500)
190 PF04548 AIG1: AIG1 family; I 97.0 0.022 4.7E-07 51.5 13.8 54 95-150 2-59 (212)
191 COG3839 MalK ABC-type sugar tr 97.0 0.00075 1.6E-08 65.5 4.4 26 92-117 28-53 (338)
192 cd01858 NGP_1 NGP-1. Autoanti 97.0 0.00069 1.5E-08 58.1 3.8 39 93-132 102-140 (157)
193 PF13238 AAA_18: AAA domain; P 97.0 0.0006 1.3E-08 55.3 3.2 22 96-117 1-22 (129)
194 COG1703 ArgK Putative periplas 97.0 0.0073 1.6E-07 57.6 10.7 176 81-276 37-230 (323)
195 PRK15494 era GTPase Era; Provi 97.0 0.015 3.1E-07 56.7 13.2 52 95-147 54-107 (339)
196 PLN02318 phosphoribulokinase/u 97.0 0.0022 4.8E-08 66.5 7.7 27 93-119 65-91 (656)
197 TIGR01846 type_I_sec_HlyB type 97.0 0.0008 1.7E-08 71.3 4.7 64 92-168 482-550 (694)
198 cd01849 YlqF_related_GTPase Yl 96.9 0.001 2.2E-08 57.0 4.4 43 93-136 100-142 (155)
199 PRK08118 topology modulation p 96.9 0.00074 1.6E-08 59.0 3.4 24 95-118 3-26 (167)
200 PLN03232 ABC transporter C fam 96.9 0.00087 1.9E-08 76.8 4.9 78 92-182 1261-1346(1495)
201 PF08477 Miro: Miro-like prote 96.9 0.0043 9.3E-08 49.8 7.6 23 96-118 2-24 (119)
202 PRK13951 bifunctional shikimat 96.9 0.0058 1.2E-07 62.4 10.2 23 95-117 2-24 (488)
203 COG0529 CysC Adenylylsulfate k 96.9 0.0077 1.7E-07 53.4 9.5 154 90-267 20-192 (197)
204 TIGR03598 GTPase_YsxC ribosome 96.9 0.0012 2.7E-08 57.5 4.6 29 88-116 13-41 (179)
205 COG1126 GlnQ ABC-type polar am 96.9 0.00082 1.8E-08 61.3 3.4 26 92-117 27-52 (240)
206 smart00382 AAA ATPases associa 96.9 0.0011 2.4E-08 53.2 3.9 27 93-119 2-28 (148)
207 cd01130 VirB11-like_ATPase Typ 96.9 0.0066 1.4E-07 53.7 9.2 28 92-119 24-51 (186)
208 PRK00454 engB GTP-binding prot 96.9 0.0012 2.6E-08 57.9 4.4 32 85-116 16-47 (196)
209 COG3840 ThiQ ABC-type thiamine 96.9 0.0012 2.5E-08 59.0 4.2 24 92-115 24-47 (231)
210 PRK09087 hypothetical protein; 96.9 0.00078 1.7E-08 61.8 3.3 113 82-218 33-157 (226)
211 PLN02674 adenylate kinase 96.9 0.011 2.3E-07 55.1 10.8 25 94-118 32-56 (244)
212 TIGR01842 type_I_sec_PrtD type 96.9 0.0011 2.3E-08 68.3 4.6 64 92-168 343-411 (544)
213 cd01854 YjeQ_engC YjeQ/EngC. 96.9 0.00076 1.6E-08 64.1 3.3 41 93-134 161-208 (287)
214 COG0125 Tmk Thymidylate kinase 96.9 0.0069 1.5E-07 55.1 9.2 42 92-135 2-43 (208)
215 PRK12289 GTPase RsgA; Reviewed 96.8 0.00097 2.1E-08 65.3 3.9 44 93-137 172-222 (352)
216 cd00009 AAA The AAA+ (ATPases 96.8 0.0024 5.2E-08 51.8 5.7 27 92-118 18-44 (151)
217 PRK10522 multidrug transporter 96.8 0.00085 1.9E-08 69.1 3.6 27 92-118 348-374 (547)
218 PRK12299 obgE GTPase CgtA; Rev 96.8 0.023 5E-07 55.3 13.3 40 95-136 160-199 (335)
219 TIGR01192 chvA glucan exporter 96.8 0.0011 2.4E-08 68.9 4.5 64 92-168 360-428 (585)
220 KOG0055|consensus 96.8 0.00057 1.2E-08 75.3 2.3 77 92-181 378-463 (1228)
221 PLN03130 ABC transporter C fam 96.8 0.0012 2.6E-08 76.2 4.9 79 92-183 1264-1350(1622)
222 smart00072 GuKc Guanylate kina 96.8 0.0011 2.4E-08 58.5 3.6 35 282-317 149-183 (184)
223 COG1084 Predicted GTPase [Gene 96.8 0.013 2.7E-07 56.5 10.8 42 92-135 167-208 (346)
224 PF00018 SH3_1: SH3 domain; I 96.8 0.00073 1.6E-08 46.6 1.8 28 1-29 21-48 (48)
225 cd04105 SR_beta Signal recogni 96.8 0.018 3.8E-07 51.7 11.3 23 94-116 1-23 (203)
226 KOG1489|consensus 96.8 0.019 4.2E-07 55.1 11.8 143 95-270 198-342 (366)
227 COG1125 OpuBA ABC-type proline 96.8 0.0015 3.2E-08 61.1 4.2 146 92-258 26-201 (309)
228 KOG0708|consensus 96.8 0.0014 3.1E-08 63.6 4.1 51 277-327 309-359 (359)
229 cd04155 Arl3 Arl3 subfamily. 96.7 0.0068 1.5E-07 51.8 8.1 24 93-116 14-37 (173)
230 smart00175 RAB Rab subfamily o 96.7 0.026 5.6E-07 47.4 11.5 21 96-116 3-23 (164)
231 TIGR01194 cyc_pep_trnsptr cycl 96.7 0.0013 2.9E-08 67.9 4.2 28 91-118 366-393 (555)
232 PF00625 Guanylate_kin: Guanyl 96.7 0.0012 2.6E-08 58.2 3.3 121 169-316 51-182 (183)
233 COG1127 Ttg2A ABC-type transpo 96.7 0.0018 4E-08 59.9 4.5 50 90-152 31-82 (263)
234 cd01893 Miro1 Miro1 subfamily. 96.7 0.079 1.7E-06 45.2 14.5 22 95-116 2-23 (166)
235 PF03308 ArgK: ArgK protein; 96.7 0.011 2.4E-07 55.4 9.4 163 93-275 29-205 (266)
236 cd04164 trmE TrmE (MnmE, ThdF, 96.7 0.0021 4.5E-08 53.5 4.3 36 95-131 3-38 (157)
237 TIGR00957 MRP_assoc_pro multi 96.7 0.0019 4.1E-08 74.3 5.3 79 92-183 1311-1397(1522)
238 PRK09435 membrane ATPase/prote 96.7 0.024 5.3E-07 55.1 12.2 26 93-118 56-81 (332)
239 PRK09518 bifunctional cytidyla 96.7 0.013 2.8E-07 62.5 11.2 57 93-150 450-508 (712)
240 COG3638 ABC-type phosphate/pho 96.6 0.0025 5.5E-08 58.8 4.7 26 92-117 29-54 (258)
241 cd00881 GTP_translation_factor 96.6 0.066 1.4E-06 45.9 13.6 23 96-118 2-24 (189)
242 cd00880 Era_like Era (E. coli 96.6 0.0083 1.8E-07 49.1 7.5 21 98-118 1-21 (163)
243 cd00820 PEPCK_HprK Phosphoenol 96.6 0.0016 3.5E-08 53.0 3.1 23 92-114 14-36 (107)
244 PRK00093 GTP-binding protein D 96.6 0.0058 1.2E-07 61.0 7.6 56 94-150 2-59 (435)
245 cd01876 YihA_EngB The YihA (En 96.6 0.0019 4.1E-08 54.0 3.6 20 96-115 2-21 (170)
246 PF00485 PRK: Phosphoribulokin 96.6 0.0015 3.3E-08 58.0 3.0 25 95-119 1-25 (194)
247 TIGR02881 spore_V_K stage V sp 96.6 0.0049 1.1E-07 57.5 6.4 25 93-117 42-66 (261)
248 PRK06547 hypothetical protein; 96.6 0.0017 3.6E-08 57.2 3.1 28 90-117 12-39 (172)
249 COG1117 PstB ABC-type phosphat 96.6 0.002 4.4E-08 58.7 3.7 27 91-117 31-57 (253)
250 PF07728 AAA_5: AAA domain (dy 96.6 0.0021 4.5E-08 53.7 3.4 24 95-118 1-24 (139)
251 PF01583 APS_kinase: Adenylyls 96.6 0.002 4.3E-08 56.0 3.3 101 93-214 2-109 (156)
252 PTZ00301 uridine kinase; Provi 96.5 0.002 4.4E-08 58.5 3.5 24 94-117 4-27 (210)
253 PTZ00243 ABC transporter; Prov 96.5 0.0026 5.6E-08 73.3 5.0 79 92-183 1335-1421(1560)
254 smart00178 SAR Sar1p-like memb 96.5 0.016 3.6E-07 50.7 9.1 24 93-116 17-40 (184)
255 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0043 9.4E-08 54.9 5.3 27 92-118 24-50 (177)
256 cd00879 Sar1 Sar1 subfamily. 96.5 0.0048 1E-07 53.9 5.5 24 94-117 20-43 (190)
257 KOG3079|consensus 96.5 0.02 4.4E-07 50.9 9.3 27 92-118 7-33 (195)
258 TIGR03594 GTPase_EngA ribosome 96.5 0.016 3.4E-07 57.7 9.8 53 96-149 2-56 (429)
259 cd01131 PilT Pilus retraction 96.5 0.017 3.8E-07 51.7 9.2 25 95-119 3-27 (198)
260 PRK04213 GTP-binding protein; 96.5 0.004 8.6E-08 55.1 5.0 24 93-116 9-32 (201)
261 cd04114 Rab30 Rab30 subfamily. 96.5 0.055 1.2E-06 45.9 11.9 22 94-115 8-29 (169)
262 COG3265 GntK Gluconate kinase 96.5 0.011 2.5E-07 50.8 7.3 141 99-266 1-159 (161)
263 cd03115 SRP The signal recogni 96.5 0.014 3.1E-07 50.5 8.2 23 95-117 2-24 (173)
264 PRK14529 adenylate kinase; Pro 96.4 0.0094 2E-07 54.8 7.1 24 95-118 2-25 (223)
265 PRK03333 coaE dephospho-CoA ki 96.4 0.0056 1.2E-07 60.8 6.0 74 241-317 166-282 (395)
266 cd03273 ABC_SMC2_euk Eukaryoti 96.4 0.0031 6.7E-08 58.4 4.0 38 80-117 12-49 (251)
267 TIGR00450 mnmE_trmE_thdF tRNA 96.4 0.0034 7.4E-08 63.3 4.4 57 93-150 203-261 (442)
268 COG4987 CydC ABC-type transpor 96.4 0.0019 4E-08 65.7 2.4 65 92-169 363-432 (573)
269 PRK10751 molybdopterin-guanine 96.4 0.0032 7E-08 55.6 3.6 27 92-118 5-31 (173)
270 cd02030 NDUO42 NADH:Ubiquinone 96.4 0.032 6.8E-07 50.7 10.1 24 95-118 1-24 (219)
271 PF00005 ABC_tran: ABC transpo 96.3 0.0026 5.6E-08 52.7 2.7 27 92-118 10-36 (137)
272 cd03238 ABC_UvrA The excision 96.3 0.0034 7.3E-08 55.5 3.6 23 92-114 20-42 (176)
273 PF13173 AAA_14: AAA domain 96.3 0.0037 8.1E-08 51.8 3.6 26 93-118 2-27 (128)
274 COG4608 AppF ABC-type oligopep 96.3 0.0039 8.4E-08 58.6 4.1 44 92-148 38-83 (268)
275 PLN03110 Rab GTPase; Provision 96.3 0.092 2E-06 47.4 13.0 23 94-116 13-35 (216)
276 PF00437 T2SE: Type II/IV secr 96.3 0.014 3E-07 54.5 7.9 95 93-193 127-231 (270)
277 PF13555 AAA_29: P-loop contai 96.3 0.0041 8.8E-08 45.7 3.3 22 94-115 24-45 (62)
278 smart00763 AAA_PrkA PrkA AAA d 96.3 0.0031 6.8E-08 61.7 3.5 27 92-118 77-103 (361)
279 PRK10865 protein disaggregatio 96.3 0.027 5.8E-07 61.4 11.0 27 93-119 199-225 (857)
280 PF02492 cobW: CobW/HypB/UreG, 96.3 0.018 3.9E-07 50.6 7.9 22 94-115 1-22 (178)
281 cd04166 CysN_ATPS CysN_ATPS su 96.3 0.1 2.2E-06 46.9 13.0 22 96-117 2-23 (208)
282 PF04665 Pox_A32: Poxvirus A32 96.3 0.003 6.5E-08 58.6 3.0 35 95-129 15-49 (241)
283 PF00448 SRP54: SRP54-type pro 96.3 0.0026 5.7E-08 57.1 2.6 25 94-118 2-26 (196)
284 cd01853 Toc34_like Toc34-like 96.3 0.004 8.7E-08 58.1 3.9 56 94-150 32-89 (249)
285 cd01878 HflX HflX subfamily. 96.3 0.0054 1.2E-07 54.4 4.6 24 94-117 42-65 (204)
286 cd01428 ADK Adenylate kinase ( 96.3 0.0033 7.2E-08 55.2 3.2 22 96-117 2-23 (194)
287 COG1100 GTPase SAR1 and relate 96.3 0.01 2.2E-07 53.0 6.3 25 94-118 6-30 (219)
288 cd01129 PulE-GspE PulE/GspE Th 96.3 0.048 1E-06 51.3 11.0 28 92-119 79-106 (264)
289 PRK06620 hypothetical protein; 96.3 0.021 4.7E-07 51.9 8.4 23 94-116 45-67 (214)
290 PRK14737 gmk guanylate kinase; 96.3 0.0038 8.2E-08 55.6 3.4 122 168-315 51-183 (186)
291 cd02020 CMPK Cytidine monophos 96.2 0.0034 7.3E-08 52.3 2.9 23 95-117 1-23 (147)
292 cd04161 Arl2l1_Arl13_like Arl2 96.2 0.0056 1.2E-07 52.7 4.3 24 95-118 1-24 (167)
293 cd00154 Rab Rab family. Rab G 96.2 0.0058 1.3E-07 50.5 4.2 23 95-117 2-24 (159)
294 PF02421 FeoB_N: Ferrous iron 96.2 0.0029 6.3E-08 55.0 2.4 52 95-148 2-55 (156)
295 COG0237 CoaE Dephospho-CoA kin 96.2 0.0034 7.4E-08 56.8 2.9 29 241-269 166-195 (201)
296 PRK07994 DNA polymerase III su 96.2 0.027 5.9E-07 59.3 10.0 24 95-118 40-63 (647)
297 CHL00181 cbbX CbbX; Provisiona 96.2 0.0094 2E-07 56.7 6.0 25 93-117 59-83 (287)
298 PF13401 AAA_22: AAA domain; P 96.2 0.0042 9E-08 50.8 3.1 26 93-118 4-29 (131)
299 cd01879 FeoB Ferrous iron tran 96.2 0.018 3.8E-07 48.1 7.0 50 98-149 1-52 (158)
300 cd02025 PanK Pantothenate kina 96.2 0.0032 6.9E-08 57.5 2.6 23 95-117 1-23 (220)
301 PLN00020 ribulose bisphosphate 96.2 0.013 2.8E-07 57.7 6.9 26 92-117 147-172 (413)
302 PLN02842 nucleotide kinase 96.2 0.085 1.8E-06 54.0 13.0 22 97-118 1-22 (505)
303 PF10662 PduV-EutP: Ethanolami 96.2 0.0041 9E-08 53.2 3.1 24 94-117 2-25 (143)
304 PF01745 IPT: Isopentenyl tran 96.2 0.0071 1.5E-07 55.2 4.7 114 94-217 2-129 (233)
305 TIGR00960 3a0501s02 Type II (G 96.2 0.0047 1E-07 55.6 3.6 27 92-118 28-54 (216)
306 TIGR01186 proV glycine betaine 96.2 0.0055 1.2E-07 60.3 4.3 27 92-118 18-44 (363)
307 TIGR00993 3a0901s04IAP86 chlor 96.2 0.0047 1E-07 64.7 4.0 56 94-151 119-177 (763)
308 PRK09270 nucleoside triphospha 96.2 0.0046 1E-07 56.5 3.5 28 92-119 32-59 (229)
309 PF03668 ATP_bind_2: P-loop AT 96.1 0.093 2E-06 49.8 12.3 70 194-266 71-152 (284)
310 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.1 0.0048 1E-07 55.5 3.6 27 92-118 29-55 (218)
311 cd04154 Arl2 Arl2 subfamily. 96.1 0.008 1.7E-07 51.8 4.8 23 94-116 15-37 (173)
312 cd03225 ABC_cobalt_CbiO_domain 96.1 0.0049 1.1E-07 55.2 3.6 27 92-118 26-52 (211)
313 cd01888 eIF2_gamma eIF2-gamma 96.1 0.21 4.6E-06 44.6 14.2 22 95-116 2-23 (203)
314 PF05729 NACHT: NACHT domain 96.1 0.0049 1.1E-07 52.0 3.4 25 94-118 1-25 (166)
315 PTZ00088 adenylate kinase 1; P 96.1 0.0041 8.8E-08 57.3 3.1 22 96-117 9-30 (229)
316 cd03261 ABC_Org_Solvent_Resist 96.1 0.0049 1.1E-07 56.3 3.6 27 92-118 25-51 (235)
317 TIGR01166 cbiO cobalt transpor 96.1 0.005 1.1E-07 54.3 3.6 27 92-118 17-43 (190)
318 cd04159 Arl10_like Arl10-like 96.1 0.0039 8.5E-08 51.6 2.7 21 96-116 2-22 (159)
319 TIGR02880 cbbX_cfxQ probable R 96.1 0.013 2.8E-07 55.6 6.6 25 93-117 58-82 (284)
320 cd03292 ABC_FtsE_transporter F 96.1 0.0051 1.1E-07 55.1 3.6 27 92-118 26-52 (214)
321 PLN02772 guanylate kinase 96.1 0.024 5.1E-07 56.2 8.4 33 284-316 285-318 (398)
322 cd00876 Ras Ras family. The R 96.1 0.0052 1.1E-07 51.3 3.4 21 96-116 2-22 (160)
323 cd03258 ABC_MetN_methionine_tr 96.1 0.0052 1.1E-07 55.9 3.6 27 92-118 30-56 (233)
324 PF01202 SKI: Shikimate kinase 96.1 0.019 4E-07 49.4 6.9 129 102-264 1-157 (158)
325 cd01889 SelB_euk SelB subfamil 96.1 0.14 3E-06 45.1 12.6 21 95-115 2-22 (192)
326 TIGR03346 chaperone_ClpB ATP-d 96.1 0.035 7.6E-07 60.5 10.5 28 92-119 193-220 (852)
327 cd04178 Nucleostemin_like Nucl 96.1 0.0065 1.4E-07 53.5 4.0 39 94-133 118-156 (172)
328 cd03263 ABC_subfamily_A The AB 96.1 0.0054 1.2E-07 55.3 3.6 27 92-118 27-53 (220)
329 COG2884 FtsE Predicted ATPase 96.1 0.0074 1.6E-07 54.2 4.3 26 92-117 27-52 (223)
330 cd03224 ABC_TM1139_LivF_branch 96.1 0.005 1.1E-07 55.5 3.3 27 92-118 25-51 (222)
331 TIGR02315 ABC_phnC phosphonate 96.1 0.0054 1.2E-07 56.1 3.6 27 92-118 27-53 (243)
332 cd03262 ABC_HisP_GlnQ_permease 96.1 0.0057 1.2E-07 54.8 3.6 27 92-118 25-51 (213)
333 cd04119 RJL RJL (RabJ-Like) su 96.0 0.0073 1.6E-07 50.8 4.0 22 95-116 2-23 (168)
334 TIGR02211 LolD_lipo_ex lipopro 96.0 0.0059 1.3E-07 55.1 3.6 27 92-118 30-56 (221)
335 cd01860 Rab5_related Rab5-rela 96.0 0.0072 1.6E-07 51.0 3.9 23 95-117 3-25 (163)
336 PRK15177 Vi polysaccharide exp 96.0 0.0057 1.2E-07 55.3 3.5 27 92-118 12-38 (213)
337 TIGR02673 FtsE cell division A 96.0 0.006 1.3E-07 54.7 3.6 27 92-118 27-53 (214)
338 TIGR02528 EutP ethanolamine ut 96.0 0.0051 1.1E-07 51.0 2.9 22 95-116 2-23 (142)
339 TIGR01271 CFTR_protein cystic 96.0 0.0057 1.2E-07 70.3 4.2 80 92-183 1244-1329(1490)
340 KOG0734|consensus 96.0 0.012 2.6E-07 60.0 6.0 40 93-153 337-376 (752)
341 cd03269 ABC_putative_ATPase Th 96.0 0.0061 1.3E-07 54.6 3.6 27 92-118 25-51 (210)
342 cd03226 ABC_cobalt_CbiO_domain 96.0 0.0061 1.3E-07 54.4 3.6 27 92-118 25-51 (205)
343 cd03256 ABC_PhnC_transporter A 96.0 0.006 1.3E-07 55.7 3.6 27 92-118 26-52 (241)
344 cd04138 H_N_K_Ras_like H-Ras/N 96.0 0.0055 1.2E-07 51.3 3.1 22 95-116 3-24 (162)
345 PRK14528 adenylate kinase; Pro 96.0 0.0058 1.3E-07 54.2 3.3 24 94-117 2-25 (186)
346 cd04125 RabA_like RabA-like su 96.0 0.18 3.9E-06 43.9 12.8 22 95-116 2-23 (188)
347 TIGR03873 F420-0_ABC_ATP propo 96.0 0.0077 1.7E-07 55.8 4.2 27 92-118 26-52 (256)
348 cd03257 ABC_NikE_OppD_transpor 96.0 0.0063 1.4E-07 55.0 3.6 27 92-118 30-56 (228)
349 cd03259 ABC_Carb_Solutes_like 96.0 0.0064 1.4E-07 54.6 3.6 27 92-118 25-51 (213)
350 TIGR00231 small_GTP small GTP- 96.0 0.0097 2.1E-07 48.7 4.4 23 95-117 3-25 (161)
351 COG0536 Obg Predicted GTPase [ 96.0 0.12 2.7E-06 50.2 12.3 39 96-136 162-200 (369)
352 cd03235 ABC_Metallic_Cations A 96.0 0.0061 1.3E-07 54.7 3.4 27 92-118 24-50 (213)
353 PRK14958 DNA polymerase III su 96.0 0.048 1E-06 56.0 10.3 24 94-117 39-62 (509)
354 TIGR03156 GTP_HflX GTP-binding 96.0 0.0069 1.5E-07 59.3 3.9 54 94-149 190-246 (351)
355 cd01867 Rab8_Rab10_Rab13_like 96.0 0.0081 1.8E-07 51.4 4.0 23 94-116 4-26 (167)
356 cd01861 Rab6 Rab6 subfamily. 96.0 0.0087 1.9E-07 50.4 4.1 22 95-116 2-23 (161)
357 PF13191 AAA_16: AAA ATPase do 95.9 0.006 1.3E-07 52.7 3.1 27 92-118 23-49 (185)
358 cd01887 IF2_eIF5B IF2/eIF5B (i 95.9 0.011 2.4E-07 50.0 4.7 23 94-116 1-23 (168)
359 cd03237 ABC_RNaseL_inhibitor_d 95.9 0.0086 1.9E-07 55.5 4.3 27 92-118 24-50 (246)
360 cd03219 ABC_Mj1267_LivG_branch 95.9 0.0062 1.3E-07 55.5 3.3 27 92-118 25-51 (236)
361 cd04169 RF3 RF3 subfamily. Pe 95.9 0.056 1.2E-06 50.8 9.9 24 93-116 2-25 (267)
362 TIGR03575 selen_PSTK_euk L-ser 95.9 0.11 2.4E-06 50.7 12.1 22 96-117 2-23 (340)
363 PLN02459 probable adenylate ki 95.9 0.016 3.4E-07 54.5 6.0 24 95-118 31-54 (261)
364 PRK14960 DNA polymerase III su 95.9 0.044 9.5E-07 57.8 9.8 24 94-117 38-61 (702)
365 KOG3347|consensus 95.9 0.031 6.7E-07 48.4 7.2 25 93-117 7-31 (176)
366 cd03293 ABC_NrtD_SsuB_transpor 95.9 0.0071 1.5E-07 54.6 3.6 27 92-118 29-55 (220)
367 cd03229 ABC_Class3 This class 95.9 0.0075 1.6E-07 52.8 3.6 27 92-118 25-51 (178)
368 cd03260 ABC_PstB_phosphate_tra 95.9 0.0077 1.7E-07 54.6 3.8 26 92-117 25-50 (227)
369 COG4525 TauB ABC-type taurine 95.9 0.007 1.5E-07 54.7 3.4 24 92-115 30-53 (259)
370 cd03265 ABC_DrrA DrrA is the A 95.9 0.0074 1.6E-07 54.5 3.6 27 92-118 25-51 (220)
371 PRK13635 cbiO cobalt transport 95.9 0.009 2E-07 56.3 4.3 27 92-118 32-58 (279)
372 TIGR03608 L_ocin_972_ABC putat 95.9 0.0076 1.6E-07 53.7 3.6 27 92-118 23-49 (206)
373 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.9 0.032 7E-07 48.2 7.5 24 93-116 15-38 (174)
374 COG1124 DppF ABC-type dipeptid 95.9 0.0072 1.6E-07 56.0 3.4 29 91-119 31-59 (252)
375 PTZ00258 GTP-binding protein; 95.9 0.014 3E-07 57.9 5.7 41 94-136 22-62 (390)
376 TIGR02314 ABC_MetN D-methionin 95.9 0.01 2.2E-07 57.9 4.7 27 92-118 30-56 (343)
377 PRK03003 GTP-binding protein D 95.9 0.032 6.8E-07 56.7 8.4 55 94-149 39-95 (472)
378 PRK15453 phosphoribulokinase; 95.9 0.0085 1.9E-07 56.9 4.0 26 93-118 5-30 (290)
379 KOG3877|consensus 95.9 0.019 4.1E-07 54.3 6.1 116 93-220 71-233 (393)
380 PF13521 AAA_28: AAA domain; P 95.9 0.0062 1.3E-07 52.4 2.8 21 96-116 2-22 (163)
381 cd03301 ABC_MalK_N The N-termi 95.9 0.0079 1.7E-07 53.9 3.6 27 92-118 25-51 (213)
382 PRK09518 bifunctional cytidyla 95.9 0.092 2E-06 56.1 12.2 56 93-149 275-332 (712)
383 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.0081 1.7E-07 51.0 3.4 27 92-118 25-51 (144)
384 cd03230 ABC_DR_subfamily_A Thi 95.8 0.0082 1.8E-07 52.3 3.6 27 92-118 25-51 (173)
385 PRK11248 tauB taurine transpor 95.8 0.0078 1.7E-07 56.0 3.6 27 92-118 26-52 (255)
386 cd02024 NRK1 Nicotinamide ribo 95.8 0.0069 1.5E-07 54.1 3.1 24 95-118 1-24 (187)
387 TIGR03864 PQQ_ABC_ATP ABC tran 95.8 0.008 1.7E-07 55.0 3.6 27 92-118 26-52 (236)
388 cd03216 ABC_Carb_Monos_I This 95.8 0.0085 1.8E-07 51.8 3.6 27 92-118 25-51 (163)
389 smart00173 RAS Ras subfamily o 95.8 0.0071 1.5E-07 51.2 3.0 22 95-116 2-23 (164)
390 PRK10584 putative ABC transpor 95.8 0.0083 1.8E-07 54.4 3.7 27 92-118 35-61 (228)
391 cd03264 ABC_drug_resistance_li 95.8 0.0072 1.6E-07 54.2 3.2 25 93-118 26-50 (211)
392 cd03296 ABC_CysA_sulfate_impor 95.8 0.0081 1.7E-07 55.0 3.6 27 92-118 27-53 (239)
393 PRK13796 GTPase YqeH; Provisio 95.8 0.0077 1.7E-07 59.2 3.6 43 93-135 160-206 (365)
394 PRK11629 lolD lipoprotein tran 95.8 0.0082 1.8E-07 54.8 3.6 27 92-118 34-60 (233)
395 cd03246 ABCC_Protease_Secretio 95.8 0.0093 2E-07 52.0 3.8 27 92-118 27-53 (173)
396 TIGR03265 PhnT2 putative 2-ami 95.8 0.0099 2.1E-07 58.2 4.4 27 92-118 29-55 (353)
397 cd01857 HSR1_MMR1 HSR1/MMR1. 95.8 0.01 2.3E-07 49.9 4.0 22 95-116 85-106 (141)
398 cd03234 ABCG_White The White s 95.8 0.0077 1.7E-07 54.7 3.4 27 92-118 32-58 (226)
399 PRK10908 cell division protein 95.8 0.0084 1.8E-07 54.2 3.6 27 92-118 27-53 (222)
400 cd03272 ABC_SMC3_euk Eukaryoti 95.8 0.0087 1.9E-07 54.8 3.7 24 92-115 22-45 (243)
401 TIGR03410 urea_trans_UrtE urea 95.8 0.0082 1.8E-07 54.5 3.5 27 92-118 25-51 (230)
402 cd03254 ABCC_Glucan_exporter_l 95.8 0.0086 1.9E-07 54.3 3.6 27 92-118 28-54 (229)
403 PRK13539 cytochrome c biogenes 95.8 0.0089 1.9E-07 53.6 3.6 27 92-118 27-53 (207)
404 PF09439 SRPRB: Signal recogni 95.8 0.0086 1.9E-07 53.3 3.5 25 92-116 2-26 (181)
405 PRK13637 cbiO cobalt transport 95.8 0.011 2.4E-07 56.0 4.4 27 92-118 32-58 (287)
406 cd03295 ABC_OpuCA_Osmoprotecti 95.8 0.0087 1.9E-07 54.9 3.6 27 92-118 26-52 (242)
407 cd01870 RhoA_like RhoA-like su 95.8 0.0082 1.8E-07 51.4 3.3 23 94-116 2-24 (175)
408 cd00882 Ras_like_GTPase Ras-li 95.8 0.077 1.7E-06 42.4 8.9 21 98-118 1-21 (157)
409 cd03266 ABC_NatA_sodium_export 95.8 0.0086 1.9E-07 53.9 3.5 27 92-118 30-56 (218)
410 cd03298 ABC_ThiQ_thiamine_tran 95.8 0.0093 2E-07 53.4 3.7 27 92-118 23-49 (211)
411 cd03218 ABC_YhbG The ABC trans 95.8 0.0086 1.9E-07 54.4 3.6 27 92-118 25-51 (232)
412 cd04158 ARD1 ARD1 subfamily. 95.8 0.011 2.3E-07 50.9 4.0 21 96-116 2-22 (169)
413 PRK14722 flhF flagellar biosyn 95.8 0.0067 1.5E-07 59.8 3.0 26 92-117 136-161 (374)
414 cd04140 ARHI_like ARHI subfami 95.8 0.0095 2.1E-07 50.8 3.6 22 95-116 3-24 (165)
415 COG1419 FlhF Flagellar GTP-bin 95.8 0.0075 1.6E-07 59.7 3.3 27 92-118 202-228 (407)
416 cd03268 ABC_BcrA_bacitracin_re 95.8 0.0089 1.9E-07 53.4 3.6 27 92-118 25-51 (208)
417 TIGR01189 ccmA heme ABC export 95.8 0.0091 2E-07 53.1 3.6 27 92-118 25-51 (198)
418 PRK13541 cytochrome c biogenes 95.8 0.0093 2E-07 52.9 3.6 27 92-118 25-51 (195)
419 PRK13540 cytochrome c biogenes 95.8 0.0098 2.1E-07 53.0 3.8 27 92-118 26-52 (200)
420 TIGR03015 pepcterm_ATPase puta 95.8 0.0099 2.1E-07 55.0 3.9 26 93-118 43-68 (269)
421 cd03223 ABCD_peroxisomal_ALDP 95.8 0.0098 2.1E-07 51.6 3.6 27 92-118 26-52 (166)
422 COG1123 ATPase components of v 95.8 0.015 3.2E-07 59.7 5.4 27 92-118 316-342 (539)
423 COG1219 ClpX ATP-dependent pro 95.7 0.0068 1.5E-07 58.3 2.8 95 93-198 97-194 (408)
424 COG4088 Predicted nucleotide k 95.7 0.0057 1.2E-07 55.6 2.1 32 94-125 2-33 (261)
425 cd03214 ABC_Iron-Siderophores_ 95.7 0.0098 2.1E-07 52.2 3.6 27 92-118 24-50 (180)
426 PRK11124 artP arginine transpo 95.7 0.0093 2E-07 54.6 3.6 27 92-118 27-53 (242)
427 cd04149 Arf6 Arf6 subfamily. 95.7 0.032 7E-07 48.1 6.8 21 95-115 11-31 (168)
428 PRK14951 DNA polymerase III su 95.7 0.067 1.4E-06 56.2 10.3 24 94-117 39-62 (618)
429 PRK15079 oligopeptide ABC tran 95.7 0.012 2.6E-07 57.1 4.5 27 92-118 46-72 (331)
430 PRK12323 DNA polymerase III su 95.7 0.062 1.4E-06 56.6 10.0 24 94-117 39-62 (700)
431 PRK10070 glycine betaine trans 95.7 0.011 2.4E-07 58.9 4.4 27 92-118 53-79 (400)
432 PRK13538 cytochrome c biogenes 95.7 0.0096 2.1E-07 53.2 3.6 27 92-118 26-52 (204)
433 PRK10247 putative ABC transpor 95.7 0.0097 2.1E-07 54.1 3.6 27 92-118 32-58 (225)
434 cd04136 Rap_like Rap-like subf 95.7 0.0098 2.1E-07 50.1 3.4 22 95-116 3-24 (163)
435 PF12775 AAA_7: P-loop contain 95.7 0.0092 2E-07 56.4 3.6 28 92-119 32-59 (272)
436 COG4181 Predicted ABC-type tra 95.7 0.018 3.8E-07 51.2 5.0 27 91-117 34-60 (228)
437 PRK14949 DNA polymerase III su 95.7 0.063 1.4E-06 58.3 10.2 25 94-118 39-63 (944)
438 cd03215 ABC_Carb_Monos_II This 95.7 0.0098 2.1E-07 52.3 3.5 27 92-118 25-51 (182)
439 cd03247 ABCC_cytochrome_bd The 95.7 0.01 2.3E-07 51.8 3.7 27 92-118 27-53 (178)
440 TIGR03597 GTPase_YqeH ribosome 95.7 0.01 2.3E-07 58.2 4.1 45 93-137 154-202 (360)
441 PRK10895 lipopolysaccharide AB 95.7 0.0096 2.1E-07 54.5 3.6 27 92-118 28-54 (241)
442 PF07724 AAA_2: AAA domain (Cd 95.7 0.0089 1.9E-07 52.5 3.2 24 95-118 5-28 (171)
443 cd03232 ABC_PDR_domain2 The pl 95.7 0.0094 2E-07 52.9 3.4 25 92-116 32-56 (192)
444 cd01862 Rab7 Rab7 subfamily. 95.7 0.0082 1.8E-07 51.0 2.9 22 95-116 2-23 (172)
445 TIGR01184 ntrCD nitrate transp 95.7 0.01 2.2E-07 54.2 3.6 27 92-118 10-36 (230)
446 cd02028 UMPK_like Uridine mono 95.7 0.0084 1.8E-07 52.9 3.0 24 95-118 1-24 (179)
447 cd03245 ABCC_bacteriocin_expor 95.7 0.01 2.2E-07 53.5 3.6 27 92-118 29-55 (220)
448 PRK13634 cbiO cobalt transport 95.7 0.012 2.7E-07 55.7 4.3 27 92-118 32-58 (290)
449 PRK07667 uridine kinase; Provi 95.7 0.0094 2E-07 53.1 3.3 26 93-118 17-42 (193)
450 PF13189 Cytidylate_kin2: Cyti 95.7 0.052 1.1E-06 47.8 8.0 24 95-118 1-24 (179)
451 PRK11247 ssuB aliphatic sulfon 95.7 0.01 2.2E-07 55.5 3.6 27 92-118 37-63 (257)
452 COG0466 Lon ATP-dependent Lon 95.7 0.013 2.9E-07 61.5 4.8 46 79-124 335-381 (782)
453 TIGR02770 nickel_nikD nickel i 95.7 0.01 2.2E-07 54.1 3.6 27 92-118 11-37 (230)
454 PRK11264 putative amino-acid A 95.7 0.01 2.2E-07 54.6 3.6 27 92-118 28-54 (250)
455 PRK09536 btuD corrinoid ABC tr 95.7 0.0093 2E-07 59.5 3.6 27 92-118 28-54 (402)
456 PRK14250 phosphate ABC transpo 95.7 0.01 2.2E-07 54.5 3.6 27 92-118 28-54 (241)
457 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 95.7 0.013 2.7E-07 49.9 3.9 22 95-116 4-25 (166)
458 PF00406 ADK: Adenylate kinase 95.7 0.0066 1.4E-07 51.6 2.2 20 98-117 1-20 (151)
459 PRK13645 cbiO cobalt transport 95.7 0.01 2.2E-07 56.2 3.6 27 92-118 36-62 (289)
460 TIGR02323 CP_lyasePhnK phospho 95.7 0.01 2.2E-07 54.8 3.6 27 92-118 28-54 (253)
461 PRK13536 nodulation factor exp 95.7 0.013 2.8E-07 57.1 4.4 28 91-118 65-92 (340)
462 TIGR01978 sufC FeS assembly AT 95.6 0.01 2.2E-07 54.3 3.5 25 92-116 25-49 (243)
463 CHL00195 ycf46 Ycf46; Provisio 95.6 0.019 4.1E-07 58.7 5.7 26 92-117 258-283 (489)
464 COG4161 ArtP ABC-type arginine 95.6 0.011 2.4E-07 51.9 3.5 25 90-114 25-49 (242)
465 PF03205 MobB: Molybdopterin g 95.6 0.011 2.4E-07 50.2 3.5 25 94-118 1-25 (140)
466 PRK14267 phosphate ABC transpo 95.6 0.011 2.3E-07 54.6 3.6 27 92-118 29-55 (253)
467 cd03233 ABC_PDR_domain1 The pl 95.6 0.0098 2.1E-07 53.3 3.3 27 92-118 32-58 (202)
468 cd04141 Rit_Rin_Ric Rit/Rin/Ri 95.6 0.36 7.8E-06 41.7 13.1 22 95-116 4-25 (172)
469 PRK11300 livG leucine/isoleuci 95.6 0.0097 2.1E-07 54.9 3.3 27 92-118 30-56 (255)
470 PRK14242 phosphate transporter 95.6 0.011 2.3E-07 54.7 3.5 26 92-117 31-56 (253)
471 TIGR01277 thiQ thiamine ABC tr 95.6 0.011 2.4E-07 53.1 3.6 27 92-118 23-49 (213)
472 cd04113 Rab4 Rab4 subfamily. 95.6 0.0097 2.1E-07 50.2 3.0 22 95-116 2-23 (161)
473 PRK10771 thiQ thiamine transpo 95.6 0.011 2.4E-07 53.9 3.5 27 92-118 24-50 (232)
474 PRK10575 iron-hydroxamate tran 95.6 0.01 2.2E-07 55.3 3.4 27 92-118 36-62 (265)
475 cd03294 ABC_Pro_Gly_Bertaine T 95.6 0.011 2.4E-07 55.3 3.7 27 92-118 49-75 (269)
476 PRK09493 glnQ glutamine ABC tr 95.6 0.011 2.4E-07 54.0 3.6 27 92-118 26-52 (240)
477 TIGR00972 3a0107s01c2 phosphat 95.6 0.012 2.5E-07 54.3 3.7 27 92-118 26-52 (247)
478 TIGR03499 FlhF flagellar biosy 95.6 0.0095 2.1E-07 56.5 3.2 26 92-117 193-218 (282)
479 TIGR02324 CP_lyasePhnL phospho 95.6 0.012 2.5E-07 53.3 3.6 27 92-118 33-59 (224)
480 PRK14273 phosphate ABC transpo 95.6 0.012 2.5E-07 54.5 3.6 27 92-118 32-58 (254)
481 PRK15056 manganese/iron transp 95.6 0.011 2.4E-07 55.3 3.6 27 92-118 32-58 (272)
482 TIGR02788 VirB11 P-type DNA tr 95.6 0.021 4.6E-07 54.7 5.5 28 92-119 143-170 (308)
483 COG4185 Uncharacterized protei 95.6 0.03 6.5E-07 48.9 5.8 101 92-217 1-108 (187)
484 TIGR03771 anch_rpt_ABC anchore 95.6 0.012 2.6E-07 53.5 3.6 27 92-118 5-31 (223)
485 TIGR03005 ectoine_ehuA ectoine 95.6 0.012 2.5E-07 54.4 3.6 27 92-118 25-51 (252)
486 PRK14247 phosphate ABC transpo 95.5 0.012 2.6E-07 54.2 3.6 27 92-118 28-54 (250)
487 TIGR00150 HI0065_YjeE ATPase, 95.5 0.015 3.4E-07 49.1 4.0 26 93-118 22-47 (133)
488 PRK13543 cytochrome c biogenes 95.5 0.013 2.7E-07 52.9 3.7 27 92-118 36-62 (214)
489 cd03236 ABC_RNaseL_inhibitor_d 95.5 0.012 2.6E-07 54.9 3.6 27 92-118 25-51 (255)
490 TIGR03740 galliderm_ABC gallid 95.5 0.021 4.5E-07 51.7 5.1 27 92-118 25-51 (223)
491 cd02029 PRK_like Phosphoribulo 95.5 0.008 1.7E-07 56.7 2.4 24 95-118 1-24 (277)
492 PRK13547 hmuV hemin importer A 95.5 0.012 2.6E-07 55.4 3.6 27 92-118 26-52 (272)
493 cd03252 ABCC_Hemolysin The ABC 95.5 0.012 2.7E-07 53.6 3.6 27 92-118 27-53 (237)
494 PRK13638 cbiO cobalt transport 95.5 0.011 2.5E-07 55.2 3.4 27 92-118 26-52 (271)
495 cd01918 HprK_C HprK/P, the bif 95.5 0.011 2.4E-07 51.0 3.0 24 93-116 14-37 (149)
496 cd01868 Rab11_like Rab11-like. 95.5 0.015 3.3E-07 49.2 3.9 22 95-116 5-26 (165)
497 PRK13537 nodulation ABC transp 95.5 0.015 3.2E-07 55.7 4.3 27 92-118 32-58 (306)
498 PF00910 RNA_helicase: RNA hel 95.5 0.01 2.2E-07 47.8 2.6 23 96-118 1-23 (107)
499 PRK12377 putative replication 95.5 0.3 6.6E-06 45.5 12.9 25 94-118 102-126 (248)
500 PRK14274 phosphate ABC transpo 95.5 0.013 2.9E-07 54.3 3.8 26 92-117 37-62 (259)
No 1
>KOG0609|consensus
Probab=100.00 E-value=9.4e-84 Score=630.30 Aligned_cols=294 Identities=52% Similarity=0.903 Sum_probs=262.3
Q ss_pred CcEEEeCCCCCceeEEeCC--CCCCceeeCChhHHHHHHhhccccccccc-cccccccccccccccchhhhccccccCCc
Q psy933 1 MFQIISKDDHNWWQARKDN--VAGSAGLIPSPELQEWRTACSTIDKTKHE-QVNCSIFGRKKKLYKDKYLAKHNAVFDQL 77 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~--~~~~~GlIPS~~~~e~r~~~~~~~~~~~~-~~~~~~~~rk~k~~~~~~~~~~~~~~~~~ 77 (330)
||||+||+|+|||||++.+ .++.||||||+.+||||.++...+.++.. ...|.+++||+|.++.+|+.++++.++..
T Consensus 245 ILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~~~c~~l~kkkk~~~~~y~~~~~~~~d~~ 324 (542)
T KOG0609|consen 245 ILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEKTRCQRLSKKKKKKKSKYLGKHSAVFDQP 324 (542)
T ss_pred eeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcCchhcccchhhhhhhhhhhhhcchhhhcc
Confidence 8999999999999999977 57999999999999999999877655332 34788888888877788999999999999
Q ss_pred cccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc
Q psy933 78 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN 157 (330)
Q Consensus 78 ~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~ 157 (330)
+.++||||++|+++++|++||+||.|||...|.++|+..+|++|+.+||||||+||++|++|++|||||+++|++++.+|
T Consensus 325 ~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~ 404 (542)
T KOG0609|consen 325 ELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAG 404 (542)
T ss_pred ccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHH
Q psy933 158 QYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILK 237 (330)
Q Consensus 158 ~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie 237 (330)
+|+|||+|.+|+|||++++|+.++++||+||||+.|++++.||+++|+||||||+||+++.++.. .+. .
T Consensus 405 ~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~-------r~~-~--- 473 (542)
T KOG0609|consen 405 KFLEYGEYEGNLYGTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRAL-------RKV-A--- 473 (542)
T ss_pred CceecCcchhccccchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHH-------hhh-c---
Confidence 99999999999999999999999999999999999999999999999999999999998765321 111 1
Q ss_pred hhccccceEEEecC-CHHHHHHHHHHHHHHhcCCCccccccccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHH
Q psy933 238 SAYEHFFDLTVVNN-DIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEE 316 (330)
Q Consensus 238 ~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~~~~~WvP~sw~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~ 316 (330)
+...+++- .-+ .+|++ |+++|++||++||||||++|||+|||.||++|+++|++
T Consensus 474 ------~~~~~~~~~~~d---~~Lq~----------------i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iek 528 (542)
T KOG0609|consen 474 ------VMSTIVAKQFTD---EDLQE----------------IIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEK 528 (542)
T ss_pred ------cccccccccCCH---HHHHH----------------HHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHH
Confidence 11113332 112 12222 35679999999999999999999999999999999999
Q ss_pred hcCCCceeecccCC
Q psy933 317 LHTTPQWIPVSWVY 330 (330)
Q Consensus 317 ~~~~~qWvp~~w~~ 330 (330)
|++||||||+||||
T Consensus 529 l~tepqWVPvsWv~ 542 (542)
T KOG0609|consen 529 LRTEPQWVPVSWVY 542 (542)
T ss_pred hccCCceeeeeccC
Confidence 99999999999996
No 2
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.9e-47 Score=330.10 Aligned_cols=172 Identities=28% Similarity=0.492 Sum_probs=160.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
++.++||+||||||||||.++|.+.+ .|..+|++|||+||+||++|+||||||+++|++++++|+||||++|.||+||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 56899999999999999999999998 7999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhccc
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYEH 242 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~~ 242 (330)
|+...|+.++++|+.+|||++.+|++++|+.....+.|||.|||+++|+ ++++.+ +||.++..+|. +..
T Consensus 81 T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~--~~~ 158 (191)
T COG0194 81 TSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEIS--HAD 158 (191)
T ss_pred CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHH--HHH
Confidence 9999999999999999999999999999999999999999999999986 345555 57888888875 356
Q ss_pred cceEEEecCCHHHHHHHHHHHHHHh
Q psy933 243 FFDLTVVNNDIEETIGILEKAIEEL 267 (330)
Q Consensus 243 ~fD~vI~N~dle~a~~~L~~~i~~~ 267 (330)
.||++|+|||++.|+++|+.+|...
T Consensus 159 ~fdyvivNdd~e~a~~~l~~ii~ae 183 (191)
T COG0194 159 EFDYVIVNDDLEKALEELKSIILAE 183 (191)
T ss_pred hCCEEEECccHHHHHHHHHHHHHHH
Confidence 6999999999999999999998754
No 3
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=100.00 E-value=5.6e-46 Score=328.97 Aligned_cols=175 Identities=38% Similarity=0.703 Sum_probs=155.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT 172 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt 172 (330)
+|||||+|||||||+||+++|++.+|++|..+++||||+||+||++|++|||||+++|+++++.|+|+||++|+|++|||
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt 81 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT 81 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC-----chHHHHHHHHHHHHHHhhcccc--ce
Q psy933 173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD-----YDGSLEKLAKESDILKSAYEHF--FD 245 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~-----~~e~~~rl~~~~~~ie~~~~~~--fD 245 (330)
+.++|+.++++|++|||+++++|++.|++.+++|++|||+|||.+.|++ ..+..+.+.+...+++..+.++ ||
T Consensus 82 ~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~~fd 161 (183)
T PF00625_consen 82 SKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYNEFD 161 (183)
T ss_dssp EHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGGGSS
T ss_pred ccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhhcCC
Confidence 9999999999999999999999999999999999999999999888752 1223344555555555566666 99
Q ss_pred EEEecCCHHHHHHHHHHHHHHh
Q psy933 246 LTVVNNDIEETIGILEKAIEEL 267 (330)
Q Consensus 246 ~vI~N~dle~a~~~L~~~i~~~ 267 (330)
++|+|+++++|+++|.++|++.
T Consensus 162 ~vi~n~~le~~~~~l~~ii~~~ 183 (183)
T PF00625_consen 162 YVIVNDDLEEAVKELKEIIEQE 183 (183)
T ss_dssp EEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHhC
Confidence 9999999999999999999863
No 4
>PRK14737 gmk guanylate kinase; Provisional
Probab=100.00 E-value=2.1e-44 Score=320.70 Aligned_cols=171 Identities=29% Similarity=0.555 Sum_probs=153.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
.+++|||+|||||||+||+++|++.+|+ +..+++||||+||+||++|+||||||+++|++++++|.|+||++|+||+||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~-~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD-FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc-cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 3579999999999999999999999986 678899999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCC-EEEEEccCcccccc--------CchHHHHH-HHHHHHHHHhhcc
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP-FVVFIAAPQLQNLS--------DYDGSLEK-LAKESDILKSAYE 241 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p-~vIfI~pps~~~l~--------~~~e~~~r-l~~~~~~ie~~~~ 241 (330)
|+.++|+.++++|++||+|++++|++.|+.....+ ++|||.|||.+.++ ..++++++ |..+. .+..+.
T Consensus 82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~--~e~~~~ 159 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGI--IELDEA 159 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHH--HHHhhh
Confidence 99999999999999999999999999999976665 89999999988764 23455654 44432 455678
Q ss_pred ccceEEEecCCHHHHHHHHHHHHH
Q psy933 242 HFFDLTVVNNDIEETIGILEKAIE 265 (330)
Q Consensus 242 ~~fD~vI~N~dle~a~~~L~~~i~ 265 (330)
+.||++|+|+|+++++++|..+|.
T Consensus 160 ~~~D~vI~N~dle~a~~ql~~ii~ 183 (186)
T PRK14737 160 NEFDYKIINDDLEDAIADLEAIIC 183 (186)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHh
Confidence 999999999999999999999885
No 5
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=100.00 E-value=1.7e-43 Score=313.72 Aligned_cols=174 Identities=37% Similarity=0.670 Sum_probs=158.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT 172 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt 172 (330)
+|+|||+|||||||+||+++|++.+|+.|..+++||||+||+||.+|+||+|+|+++|+++++.|.|+||+++.||+|||
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 58999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHHHHHHHHHHHHHhhccccc
Q psy933 173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSLEKLAKESDILKSAYEHFF 244 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~~rl~~~~~~ie~~~~~~f 244 (330)
++++|++++++|++||||++++|+++|++..++|++|||.|||.+.|+ +.++.+++....+++....+ ++|
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~~-~~f 160 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQEY-HLF 160 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhh-ccC
Confidence 999999999999999999999999999999999999999999988775 23455644333445444455 889
Q ss_pred eEEEecCCHHHHHHHHHHHHHHh
Q psy933 245 DLTVVNNDIEETIGILEKAIEEL 267 (330)
Q Consensus 245 D~vI~N~dle~a~~~L~~~i~~~ 267 (330)
|++|+|+|+++|+++|+++|+..
T Consensus 161 d~~I~n~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 161 DYVIVNDDLEDAYEELKEILEAE 183 (184)
T ss_pred CEEEECcCHHHHHHHHHHHHHhc
Confidence 99999999999999999999864
No 6
>PLN02772 guanylate kinase
Probab=100.00 E-value=2.6e-42 Score=334.70 Aligned_cols=189 Identities=27% Similarity=0.519 Sum_probs=170.9
Q ss_pred cCceeeecccC----CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh
Q psy933 80 VTYEEVVKLPS----FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155 (330)
Q Consensus 80 ~~Ye~V~~~~~----~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~ 155 (330)
+.-|||+++++ ..+++|||+|||||||+||+++|++.+|..|.++++||||+||++|++|++|||+++++|+++++
T Consensus 118 ~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~ 197 (398)
T PLN02772 118 LLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIK 197 (398)
T ss_pred cccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCHHHHHHHHH
Confidence 34688998862 36789999999999999999999999998899999999999999999999999999999999999
Q ss_pred ccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-
Q psy933 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL- 226 (330)
Q Consensus 156 ~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~- 226 (330)
+|.|+||++++||+|||++++|+.++++|++|||++|++|++.|++..+.+++|||.||++++|+ +.++++
T Consensus 198 ~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~ 277 (398)
T PLN02772 198 DGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQ 277 (398)
T ss_pred hCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999998875 234555
Q ss_pred HHHHHHHHHHHh-hccccceEEEecCCHHHHHHHHHHHHHHhc
Q psy933 227 EKLAKESDILKS-AYEHFFDLTVVNNDIEETIGILEKAIEELH 268 (330)
Q Consensus 227 ~rl~~~~~~ie~-~~~~~fD~vI~N~dle~a~~~L~~~i~~~~ 268 (330)
+||..+..+|+. .+.++||++|+|+|+++|+++|+++|....
T Consensus 278 kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~A~~~L~~iL~~~~ 320 (398)
T PLN02772 278 KRLRNAEAELEQGKSSGIFDHILYNDNLEECYKNLKKLLGLDG 320 (398)
T ss_pred HHHHHHHHHHhhccccCCCCEEEECCCHHHHHHHHHHHHhhcC
Confidence 567666566763 467899999999999999999999997554
No 7
>KOG0708|consensus
Probab=100.00 E-value=3e-38 Score=300.01 Aligned_cols=253 Identities=26% Similarity=0.506 Sum_probs=211.8
Q ss_pred CcEEEeCCCCCceeEEeC---CCCCCceeeCChhHHHHHHhhccccccccccccccccccccccccchhh----hccccc
Q psy933 1 MFQIISKDDHNWWQARKD---NVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYL----AKHNAV 73 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~---~~~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~----~~~~~~ 73 (330)
|+|+++..|..|||||+. +.....|+|||+...++|...... .. .+ .++|+++..+.+.. ...+..
T Consensus 95 i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k----~~--~f-~~~~~~~~~~s~d~~~~~~~~~~~ 167 (359)
T KOG0708|consen 95 ILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLK----RD--SF-NSGRDFPFLLSKDGLDMSSDENEL 167 (359)
T ss_pred hhhccccccHHHHHhhccCCCcccccccccccccccccccccccc----cc--cc-cccCCcccccCccccccccccccc
Confidence 689999999999999993 456779999999877765432111 00 00 01122221111110 122233
Q ss_pred cCCccccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhH
Q psy933 74 FDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153 (330)
Q Consensus 74 ~~~~~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~ 153 (330)
.+...+++||.|.++.....|||+|+||. |.-|...|+.++|++|..|++||||+. +++|+++
T Consensus 168 ~~e~~~lsY~~V~~~~~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~ 230 (359)
T KOG0708|consen 168 GKELSLLSYELVERLDSNYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERD 230 (359)
T ss_pred ccccccccchhhhhhhccccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhh
Confidence 34456889999999998889999999999 999999999999999999999999985 6789999
Q ss_pred HhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC-----chHHHHH
Q psy933 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD-----YDGSLEK 228 (330)
Q Consensus 154 i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~-----~~e~~~r 228 (330)
++.+.||+++++.|++|||+..+|+++.++|+|||||++..|+++|+...++||+|||+|.|.+.+++ +.+..++
T Consensus 231 ~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake 310 (359)
T KOG0708|consen 231 SKEETFIDAGQRSNGLYGTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERNLKITGEQAKE 310 (359)
T ss_pred cccCceeeecccCCCcceehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHhcccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988764 3456678
Q ss_pred HHHHHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy933 229 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS 277 (330)
Q Consensus 229 l~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~s 277 (330)
+++++.++|++|..+|..+|.-++++++|.+++.+|+.+|....|||+.
T Consensus 311 ~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWVp~~ 359 (359)
T KOG0708|consen 311 LLERARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWVPAK 359 (359)
T ss_pred HHHHHHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEeeeCC
Confidence 9999999999999999999999999999999999999999999999974
No 8
>PRK14738 gmk guanylate kinase; Provisional
Probab=100.00 E-value=9.5e-34 Score=255.86 Aligned_cols=175 Identities=24% Similarity=0.377 Sum_probs=151.6
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcc
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM 169 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~ 169 (330)
++.+++|||+||||||||||++.|.+..+ .|.++++||||+||++|.+|++|||||+++|++++.+|.|+||+++.||+
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~ 88 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY 88 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence 45678999999999999999999987765 69999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhc
Q psy933 170 YGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAY 240 (330)
Q Consensus 170 YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~ 240 (330)
|||+.++|+.++++|++||++++.+|+..|+...+.+++||+.||+.+.|. +..+++ +|+.....++..
T Consensus 89 YGt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~-- 166 (206)
T PRK14738 89 YGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQ-- 166 (206)
T ss_pred ecCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc--
Confidence 999999999999999999999999999999988878899999999976543 122344 455555444432
Q ss_pred cccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933 241 EHFFDLTVVNN--DIEETIGILEKAIEEL 267 (330)
Q Consensus 241 ~~~fD~vI~N~--dle~a~~~L~~~i~~~ 267 (330)
...||++++|. ++++++++|.++|...
T Consensus 167 ~~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 167 LPEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred ccCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 24479998884 8999999999999764
No 9
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=100.00 E-value=5.1e-33 Score=235.87 Aligned_cols=136 Identities=32% Similarity=0.599 Sum_probs=132.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccccH
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKL 174 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~ 174 (330)
+|+|+||||+|||||++.|++.++..|..+++||||+|+++|.+|++|+|++.++|.+++.++.|++++++.||+||++.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 58999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhccccceEEEecCCHH
Q psy933 175 ETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIE 254 (330)
Q Consensus 175 ~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle 254 (330)
++|++++++|++||++++++|+++|+..+++|++|||.|| |++|+|++++
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~------------------------------~~~~~~~~~~ 130 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP------------------------------DYVIVNDDLE 130 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC------------------------------CeEEeCCCHH
Confidence 9999999999999999999999999999999999999997 9999999999
Q ss_pred HHHHHH
Q psy933 255 ETIGIL 260 (330)
Q Consensus 255 ~a~~~L 260 (330)
+++++|
T Consensus 131 ~~~~~~ 136 (137)
T cd00071 131 KAYEEL 136 (137)
T ss_pred HHHHhh
Confidence 999887
No 10
>KOG0707|consensus
Probab=100.00 E-value=7.5e-34 Score=255.97 Aligned_cols=176 Identities=30% Similarity=0.560 Sum_probs=155.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
..++|||.||+|+||+||.++|++.+|..|+++++||||.||.+|++|.+|||+++++|+.|+..+.|+||.++.||+||
T Consensus 36 ~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yG 115 (231)
T KOG0707|consen 36 DFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYG 115 (231)
T ss_pred CCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCC
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHh-hcc
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKS-AYE 241 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~-~~~ 241 (330)
|++++++++...|+.|++|++.+|++.++...++++.||+.||+...+. +.++++ +|+..+.++++. .-.
T Consensus 116 tsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~~~~ 195 (231)
T KOG0707|consen 116 TSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEILENS 195 (231)
T ss_pred chHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccccCC
Confidence 9999999999999999999999999999999999999999999987664 234444 556533333321 123
Q ss_pred ccceEEEec-CCHHHHHHHHHHHHHHh
Q psy933 242 HFFDLTVVN-NDIEETIGILEKAIEEL 267 (330)
Q Consensus 242 ~~fD~vI~N-~dle~a~~~L~~~i~~~ 267 (330)
..||++|+| +++++|+++|..++...
T Consensus 196 g~~d~~~~ns~~lee~~kel~~~~~~~ 222 (231)
T KOG0707|consen 196 GSFDLVIVNSDRLEEAYKELEIFISSD 222 (231)
T ss_pred ccccceecCCCchhhhhhhhhhhhhHH
Confidence 569999999 89999999999887543
No 11
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.97 E-value=3.2e-30 Score=226.35 Aligned_cols=170 Identities=28% Similarity=0.506 Sum_probs=150.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT 172 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt 172 (330)
+++|+|+||+|||||||++.|++.++. +...+++|||+|+.||.+|.+|+|++.++|.+++..+.|++++++.+++||+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT 79 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence 468999999999999999999998885 7788999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhcccc
Q psy933 173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAYEHF 243 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~~~~ 243 (330)
+.+.|+.++++|++||+|+++.+++.++.....|+.||+.||+.+.+++ .++.+ +++......+ .+.+.
T Consensus 80 ~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~--~~~~~ 157 (180)
T TIGR03263 80 PKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEI--AHADE 157 (180)
T ss_pred cHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--hcccc
Confidence 9999999999999999999999999999998889999999998776641 33445 3454443333 46788
Q ss_pred ceEEEecCCHHHHHHHHHHHHH
Q psy933 244 FDLTVVNNDIEETIGILEKAIE 265 (330)
Q Consensus 244 fD~vI~N~dle~a~~~L~~~i~ 265 (330)
||++|+|+|+++++++|++++.
T Consensus 158 ~d~~i~n~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 158 FDYVIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred CcEEEECCCHHHHHHHHHHHHh
Confidence 9999999999999999999874
No 12
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.97 E-value=1.7e-29 Score=226.32 Aligned_cols=174 Identities=25% Similarity=0.463 Sum_probs=154.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
+++.|+|+||||||||||++.|+..+| .|...++||||+|+.||++|.+|+|++.++|.+++.++.|++++++.++.||
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 82 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYG 82 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCcccc
Confidence 357999999999999999999999988 7899999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHHH-HHHHHHHHHHhhccc
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSLE-KLAKESDILKSAYEH 242 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~~-rl~~~~~~ie~~~~~ 242 (330)
++..+|+.++++|++||+|+++++...+++....+++||+.||+.+.+++ .++.++ |+......+ .+.+
T Consensus 83 ~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~--~~~~ 160 (205)
T PRK00300 83 TPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEI--AHAS 160 (205)
T ss_pred CcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HhHH
Confidence 99999999999999999999999999999988889999999998766641 334443 444433333 3567
Q ss_pred cceEEEecCCHHHHHHHHHHHHHHhc
Q psy933 243 FFDLTVVNNDIEETIGILEKAIEELH 268 (330)
Q Consensus 243 ~fD~vI~N~dle~a~~~L~~~i~~~~ 268 (330)
.||++|+|+++++++.+|..+++...
T Consensus 161 ~~d~vi~n~~~e~~~~~l~~il~~~~ 186 (205)
T PRK00300 161 EYDYVIVNDDLDTALEELKAIIRAER 186 (205)
T ss_pred hCCEEEECCCHHHHHHHHHHHHHHHH
Confidence 79999999999999999999998873
No 13
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.83 E-value=4.2e-20 Score=163.93 Aligned_cols=169 Identities=15% Similarity=0.193 Sum_probs=126.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
++..|+|+||||||||||++.|....+..|......+||+++.+ +.+|+|++.++|.+++..+.|.++..+.||+||
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 35789999999999999999998876545777778889987654 567999999999999999999988899999999
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCC-EEEEEccCccccccC--------chHHHH-HHHHHHHHHHhhcc
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSP-FVVFIAAPQLQNLSD--------YDGSLE-KLAKESDILKSAYE 241 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p-~vIfI~pps~~~l~~--------~~e~~~-rl~~~~~~ie~~~~ 241 (330)
|+. +++..++.|+.+|++........++.....+ .+||+.+| .+.+.+ ..++++ |+..+ ..|
T Consensus 78 ~~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s-~e~l~~RL~~R~~~~~~~i~~rl~r~-----~~~- 149 (186)
T PRK10078 78 VGI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVS-PEILRQRLENRGRENASEINARLARA-----ARY- 149 (186)
T ss_pred CcH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHHhCCCCHHHHHHHHHHh-----hhh-
Confidence 999 5999999999999887776666777664444 46677654 444421 122232 23111 112
Q ss_pred ccceEE-EecC-CHHHHHHHHHHHHHHhcCCC
Q psy933 242 HFFDLT-VVNN-DIEETIGILEKAIEELHTTP 271 (330)
Q Consensus 242 ~~fD~v-I~N~-dle~a~~~L~~~i~~~~~~~ 271 (330)
..+|++ |.|+ ++++++++|..++..-+.+.
T Consensus 150 ~~ad~~vi~~~~s~ee~~~~i~~~l~~~~~~~ 181 (186)
T PRK10078 150 QPQDCHTLNNDGSLRQSVDTLLTLLHLSQKEK 181 (186)
T ss_pred ccCCEEEEeCCCCHHHHHHHHHHHHhhcCccc
Confidence 246854 4444 69999999999998766543
No 14
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.82 E-value=3.8e-19 Score=156.13 Aligned_cols=163 Identities=17% Similarity=0.232 Sum_probs=126.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCC--CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPD--KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~--~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
+.++|+||||||||||++.|....+. .+.+..++|||+++ .+|.+|+|++.++|..++..+.|.++.++.+++||
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 57999999999999999999887653 24566889999864 46899999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhcc-
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAYE- 241 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~~- 241 (330)
++. .+...+++|+.+|++.+......++......++||+.+| .+.+.+ ..+.+ +++... ..|.
T Consensus 79 ~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~~~-~~~~~~Rl~~R~~~~~~~~~~rl~~~-----~~~~~ 151 (179)
T TIGR02322 79 IPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNITAS-PDVLAQRLAARGRESREEIEERLARS-----ARFAA 151 (179)
T ss_pred ChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHHH-----hhccc
Confidence 997 588888999999999998888888776556789999865 344321 12223 233211 1222
Q ss_pred ccceEE-EecC-CHHHHHHHHHHHHHH
Q psy933 242 HFFDLT-VVNN-DIEETIGILEKAIEE 266 (330)
Q Consensus 242 ~~fD~v-I~N~-dle~a~~~L~~~i~~ 266 (330)
..+|++ |.|+ ++++++++|.+++.+
T Consensus 152 ~~~~~~vi~~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 152 APADVTTIDNSGSLEVAGETLLRLLRK 178 (179)
T ss_pred ccCCEEEEeCCCCHHHHHHHHHHHHcc
Confidence 456777 6665 899999999988754
No 15
>PRK08356 hypothetical protein; Provisional
Probab=99.79 E-value=1.9e-19 Score=160.94 Aligned_cols=169 Identities=14% Similarity=0.196 Sum_probs=119.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTK 173 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts 173 (330)
..|+|+||+||||||+++.|. .+ .|. .+++|+|.++..+.+|.+|+|++...|..++..+.|+++|++.++.||++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~--g~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~ 81 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EK--GFC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGED 81 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HC--CCc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcH
Confidence 578999999999999999994 43 566 89999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHHhCCeEEEEeCHHHHHHHHh----cCCCCEEEEEccCcccc---cc----C------chHHHHHHHHHHHHH
Q psy933 174 LETIRRIHQEGKIAILDVEPQALKILRT----GEFSPFVVFIAAPQLQN---LS----D------YDGSLEKLAKESDIL 236 (330)
Q Consensus 174 ~~~i~~v~~~gk~~vldv~~~~v~~L~~----~~~~p~vIfI~pps~~~---l~----~------~~e~~~rl~~~~~~i 236 (330)
. -++.+++..+.+. .+..+|++.+.+ ......+|||.+|.... |. + ..+++.++..+...+
T Consensus 82 ~-~~~~~~~~~~~~~-~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~~~~~l 159 (195)
T PRK08356 82 I-LIRLAVDKKRNCK-NIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFEDFLKFDEWEEKL 159 (195)
T ss_pred H-HHHHHHHHhccCC-eEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHh
Confidence 4 2222332222111 122234443332 12235889998875321 21 1 223345554433322
Q ss_pred --HhhccccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933 237 --KSAYEHFFDLTVVNN-DIEETIGILEKAIEELH 268 (330)
Q Consensus 237 --e~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~ 268 (330)
...+...+|++|+|+ +++++.++|..++..+.
T Consensus 160 ~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~~~~ 194 (195)
T PRK08356 160 YHTTKLKDKADFVIVNEGTLEELRKKVEEILRELS 194 (195)
T ss_pred hhhhhHHHhCcEEEECCCCHHHHHHHHHHHHHHhc
Confidence 122347899999995 99999999999998764
No 16
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2.8e-16 Score=135.03 Aligned_cols=168 Identities=16% Similarity=0.212 Sum_probs=137.9
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCCCC--ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCc
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDK--YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDA 168 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~--f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~ 168 (330)
++++.|+++||||+||+||+..+...++.. |.++-.+.|||...| |.|+.-+|..+|.++-.+|.|--..+.+|.
T Consensus 3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag---~EdH~avs~~eF~~~a~~g~FAlsWqAhGL 79 (192)
T COG3709 3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAG---GEDHDALSEAEFNTRAGQGAFALSWQAHGL 79 (192)
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCC---cccccccCHHHHHHHhhcCceeEEehhcCc
Confidence 367999999999999999999988887775 888888999987666 567889999999999999999999999999
Q ss_pred cccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhh
Q psy933 169 MYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSA 239 (330)
Q Consensus 169 ~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~ 239 (330)
+||++. +|..-++.|.++|.+.+...+..++..+..-.+|.|..+ ++.|. |+.|++ .||.+++...
T Consensus 80 ~Ygip~-eId~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~-p~VLaqRL~~RGREs~eeI~aRL~R~a~~~--- 154 (192)
T COG3709 80 SYGIPA-EIDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITAS-PEVLAQRLAERGRESREEILARLARAARYT--- 154 (192)
T ss_pred cccCch-hHHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecC-HHHHHHHHHHhccCCHHHHHHHHHhhcccc---
Confidence 999986 588899999999999999999999998877777777653 44553 455555 5677664422
Q ss_pred ccccceE-EEecC-CHHHHHHHHHHHHHHh
Q psy933 240 YEHFFDL-TVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 240 ~~~~fD~-vI~N~-dle~a~~~L~~~i~~~ 267 (330)
..-.|. +|.|+ .++.|.++|...+.+.
T Consensus 155 -~~~~dv~~idNsG~l~~ag~~ll~~l~~~ 183 (192)
T COG3709 155 -AGPGDVTTIDNSGELEDAGERLLALLHQD 183 (192)
T ss_pred -cCCCCeEEEcCCCcHHHHHHHHHHHHHhh
Confidence 134665 57777 9999999999988754
No 17
>KOG3580|consensus
Probab=99.70 E-value=8.3e-17 Score=159.87 Aligned_cols=233 Identities=24% Similarity=0.337 Sum_probs=164.1
Q ss_pred CceeEEeCCC---CCCceeeCChhHHHHHHhhcccccccccccc-----cccccc-ccc-cccchhhhccccccCCcccc
Q psy933 11 NWWQARKDNV---AGSAGLIPSPELQEWRTACSTIDKTKHEQVN-----CSIFGR-KKK-LYKDKYLAKHNAVFDQLDLV 80 (330)
Q Consensus 11 ~WWQA~~~~~---~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~-----~~~~~r-k~k-~~~~~~~~~~~~~~~~~~~~ 80 (330)
+-|-|-+.|. ....|+||.+.+.|+-.+.+...++.....+ .+-+++ .|| ..|+. ...+...-+...+
T Consensus 541 G~WLAvRiG~dlrE~ErGiIPNksRAEQlASvq~aqr~~agGdRAdFWR~RGlRsg~KknlrkSR--EDLsA~~vqtkfP 618 (1027)
T KOG3580|consen 541 GNWLAVRIGNDLRELERGIIPNKSRAEQLASVQNAQRDNAGGDRADFWRMRGLRSGVKKNLRKSR--EDLSAVVVQTKFP 618 (1027)
T ss_pred cceEEEeecccHHHHhcccCCCccHHHHHHHHHhhccccccchHHHHHHHhhhhhhhhhhhhhhh--hhhhhceecccCC
Confidence 3466666554 5678999999999986655443222211000 000111 111 11111 1112222344578
Q ss_pred CceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcccee
Q psy933 81 TYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYL 160 (330)
Q Consensus 81 ~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fl 160 (330)
.||.|+.-.....|||||+||- -+--+.+|..+.||.|..+-+. ||.. |-+ ....+
T Consensus 619 aYERVvLREAgFkRPVvifGPi---ADiAmeKLa~E~PD~fqiAkte----prda---g~~-------------~stg~- 674 (1027)
T KOG3580|consen 619 AYERVVLREAGFKRPVVIFGPI---ADIAMEKLANELPDWFQIAKTE----PRDA---GSE-------------KSTGV- 674 (1027)
T ss_pred chhhhhhhhhcccCceEEeccH---HHHHHHHHhhhCcchhhhhccc----cccC---Ccc-------------cccce-
Confidence 9999998877667999999998 6778889999999988766321 1111 100 00011
Q ss_pred eEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHHHHHHHH
Q psy933 161 EYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSLEKLAKE 232 (330)
Q Consensus 161 e~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~~rl~~~ 232 (330)
+.+..|+.++++.||++|||.|.|+.+|.....+|||||+.|.|..-++ .+....++|+..
T Consensus 675 -----------irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL~P~Sr~SsRkLy~~ 743 (1027)
T KOG3580|consen 675 -----------IRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLAPTSRKSSRKLYDQ 743 (1027)
T ss_pred -----------EEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHhCcccchhHHHHHHH
Confidence 3467899999999999999999999999999999999999999876554 234456789999
Q ss_pred HHHHHhhccccceEEEec-CCHHHHHHHHHHHHHHhcCCCccccccccc
Q psy933 233 SDILKSAYEHFFDLTVVN-NDIEETIGILEKAIEELHTTPQWIPVSWLA 280 (330)
Q Consensus 233 ~~~ie~~~~~~fD~vI~N-~dle~a~~~L~~~i~~~~~~~~WvP~sw~~ 280 (330)
+.++.....|+|.++|.- ..-+..|..|+++|++.|+++.||-..-+.
T Consensus 744 a~KL~K~~~HLFTaTInLNs~nD~Wyg~LK~~iq~QQ~~~vWvsEgk~d 792 (1027)
T KOG3580|consen 744 ANKLKKTCAHLFTATINLNSANDSWYGSLKDTIQHQQGEAVWVSEGKMD 792 (1027)
T ss_pred HHHHhhhchhheEeeeccCCCChhHHHHHHHHHHHhcCceeEeeccccc
Confidence 999998899999999964 477889999999999999999999876553
No 18
>KOG3812|consensus
Probab=99.51 E-value=5.5e-14 Score=132.19 Aligned_cols=244 Identities=19% Similarity=0.259 Sum_probs=142.7
Q ss_pred cEEEeCCCCCceeEEeCCCCCCceeeCChhHHHHHHhhcccccccccc--ccccccccccccccchhhhccccccCCccc
Q psy933 2 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQ--VNCSIFGRKKKLYKDKYLAKHNAVFDQLDL 79 (330)
Q Consensus 2 L~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~e~r~~~~~~~~~~~~~--~~~~~~~rk~k~~~~~~~~~~~~~~~~~~~ 79 (330)
|||..+-+..||-+|.+.+++..|+|||+.+.|.-...... .++... .+..-.+.++.+..+ .+++-.....+.+
T Consensus 90 lHIkeKynnDWWIGRlVkeg~e~gFiPsp~rLen~r~~~e~-~~~~~~n~ssl~~vg~r~stpp~--ta~~kd~~~~E~~ 166 (475)
T KOG3812|consen 90 LHIKEKYNNDWWIGRLVKEGCEIGFIPSPVRLENIRLQQEQ-SSKSSGNSSSLGDVGSRRSTPPS--TADQKDKSITEHV 166 (475)
T ss_pred eeehhhcccchhHHHHhhcCCccccccchHHHHHHHhhhhh-hcccCCCccccCCcccCCCCCCC--hhhhhhhhhcccC
Confidence 89999999999999998888999999999876642211111 111111 111111111111100 1111111123456
Q ss_pred cCceeeecccCCCCCEEEEEcCCCcc--HHHH-HHHHHhhCCCCcccccccc--ccCC----CCcccCCeeEEEecccch
Q psy933 80 VTYEEVVKLPSFKRKTLVLLGAHGVG--RRHI-KNTLINKFPDKYAYPVPHT--TRSP----RSDEENGRAYYFISHDEM 150 (330)
Q Consensus 80 ~~Ye~V~~~~~~~~r~ivLvGpsGvG--KstL-~~~L~~~~p~~f~~~v~~T--TR~p----r~~E~~G~dy~fvs~~~f 150 (330)
++|.-|-.| |||||+|||--| -|-+ -+.|......+|.+-++.| |... |.+-.++-..
T Consensus 167 pPYdVVPSm-----RPvVLvGPsLkgyevTdmmqkAlfd~lkhrF~grisitrVtaDIslakrS~lnnp~k~-------- 233 (475)
T KOG3812|consen 167 PPYDVVPSM-----RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISITRVTADISLAKRSVLNNPSKR-------- 233 (475)
T ss_pred CccccCCCC-----CceEEecCccccccHHHHHHHHHHHHHHHhcCCceeEEEEeechhhhhhhhccCccce--------
Confidence 777765544 899999999655 4443 3556666666788666544 2211 1111122111
Q ss_pred hhHHhccceeeEEeecCccccccHHHHHHHH---HhCCeEEEEeCH-HHHHHHHhcCCCCEEEEEccCccccccCc----
Q psy933 151 MSDIAANQYLEYGTHEDAMYGTKLETIRRIH---QEGKIAILDVEP-QALKILRTGEFSPFVVFIAAPQLQNLSDY---- 222 (330)
Q Consensus 151 ~~~i~~~~fle~~~~~g~~YGts~~~i~~v~---~~gk~~vldv~~-~~v~~L~~~~~~p~vIfI~pps~~~l~~~---- 222 (330)
..+|-..-. +...---..|+.++ .+-..+|||.+. .--.+|.+..+.||+|||+..|.+.|...
T Consensus 234 -------~~~eRsn~R-sslaevqsEiErIfelarsLqLvvlDadtInhPaql~ktsLaPI~v~ikvSspKvLqrLirsr 305 (475)
T KOG3812|consen 234 -------AIIERSNTR-SSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLAKTSLAPIIVYIKVSSPKVLQRLIRSR 305 (475)
T ss_pred -------eeeeeccch-hhHHHHHHHHHHHHHHHhhceEEEecCCcCCCHHHhccCCCcceEEEEEeCCHHHHHHHHHhc
Confidence 112211000 00111123344444 455667788774 44567888899999999999888877521
Q ss_pred ----hHHHHHHHHHHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcC
Q psy933 223 ----DGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHT 269 (330)
Q Consensus 223 ----~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~ 269 (330)
-..+.--..++++++|.....||.+|..+.|++||+.|.+.++....
T Consensus 306 Gksq~K~lnvq~va~~klaQc~~e~FdvildENqLedAcehla~yLEaYw~ 356 (475)
T KOG3812|consen 306 GKSQSKHLNVQMVAADKLAQCPPEGFDVILDENQLEDACEHLAEYLEAYWR 356 (475)
T ss_pred CchhhhhchHhhhhcchhhhCChhhhheeeccccHHHHHHHHHHHHHHHHh
Confidence 11122223456778888889999999999999999999999998643
No 19
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.44 E-value=6.4e-14 Score=133.92 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=81.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 163 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~ 163 (330)
++++|+|+||+|||||+|+..|++.+... +...+++||++|+++|.+|++|||++..++.+.+..+.|++++
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 45789999999999999999999987643 5666899999999999999999999999999999999999886
Q ss_pred eecCccccccHHHHHHHHHhCCeEEEEe
Q psy933 164 THEDAMYGTKLETIRRIHQEGKIAILDV 191 (330)
Q Consensus 164 ~~~g~~YGts~~~i~~v~~~gk~~vldv 191 (330)
...|++++++|+++|++-
T Consensus 83 ----------~~~i~~i~~~gk~pIlvG 100 (307)
T PRK00091 83 ----------LAAIADILARGKLPILVG 100 (307)
T ss_pred ----------HHHHHHHHhCCCCEEEEC
Confidence 788999999999999983
No 20
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.21 E-value=2.2e-11 Score=106.92 Aligned_cols=156 Identities=13% Similarity=0.105 Sum_probs=91.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhh---HHh-ccceeeEEe-ec
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMS---DIA-ANQYLEYGT-HE 166 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~---~i~-~~~fle~~~-~~ 166 (330)
++.|+|+|||||||||+++.|.+..+..|... |+|+++. ....+.. .+. .+.+.++.+ ..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~--------------~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHF--------------GVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEF 67 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcccc--------------CccHHHHhcChhhcccccccccCccCCcccchHH
Confidence 57999999999999999999998876433211 3332222 1111110 011 111222222 34
Q ss_pred CccccccHHHHHHHHHhCCeEEEEeCHHH---HH-HHHh-cCCCCEEEEEccCccccccCc----hHHHHHHHHHHHHHH
Q psy933 167 DAMYGTKLETIRRIHQEGKIAILDVEPQA---LK-ILRT-GEFSPFVVFIAAPQLQNLSDY----DGSLEKLAKESDILK 237 (330)
Q Consensus 167 g~~YGts~~~i~~v~~~gk~~vldv~~~~---v~-~L~~-~~~~p~vIfI~pps~~~l~~~----~e~~~rl~~~~~~ie 237 (330)
++.|++....+...+++|..||+|....+ .+ .++. .....+.||+.+|. +.+.+. .+...++........
T Consensus 68 ~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~-~~l~~R~~~R~~~~~~~~~~~~~~~ 146 (175)
T cd00227 68 RLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPG-EVAEGRETARGDRVPGQARKQARVV 146 (175)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCH-HHHHHHHHhcCCccchHHHHHHHHh
Confidence 57899999999999999999999975432 22 2222 22345678888874 444321 111122322211111
Q ss_pred hhccccceEEEecC--CHHHHHHHHHHHH
Q psy933 238 SAYEHFFDLTVVNN--DIEETIGILEKAI 264 (330)
Q Consensus 238 ~~~~~~fD~vI~N~--dle~a~~~L~~~i 264 (330)
.-...+|++|.++ ++++++++|.+.|
T Consensus 147 -~~~~~~dl~iDts~~s~~e~a~~i~~~l 174 (175)
T cd00227 147 -HAGVEYDLEVDTTHKTPIECARAIAARV 174 (175)
T ss_pred -cCCCcceEEEECCCCCHHHHHHHHHHhc
Confidence 1135689999887 7899988887654
No 21
>KOG0609|consensus
Probab=99.13 E-value=3.8e-11 Score=119.39 Aligned_cols=129 Identities=31% Similarity=0.501 Sum_probs=90.9
Q ss_pred cccCCeeEEEecccchhhHHhccceeeEEeecCccccccHHHHHHHH-HhCCeEEEEeCHH---HHHHHHhcCCCCEEEE
Q psy933 135 DEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIH-QEGKIAILDVEPQ---ALKILRTGEFSPFVVF 210 (330)
Q Consensus 135 ~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~~~i~~v~-~~gk~~vldv~~~---~v~~L~~~~~~p~vIf 210 (330)
||-.| ++|-.+.+....-+..|+..--. ....+++.+- ..=+..|+.+-|- .+++++.....-.
T Consensus 410 GEy~~-nlYGTs~dsVr~v~~~gKicvLd--------v~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~--- 477 (542)
T KOG0609|consen 410 GEYEG-NLYGTSLDSVRNVIASGKICVLD--------VEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMST--- 477 (542)
T ss_pred Ccchh-ccccchHHHHHHHHHhCCEEEEe--------cCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccc---
Confidence 34443 46667788888888888754332 2233443322 2234556666554 4455554322111
Q ss_pred EccCccccccCchHHHHHHHHHHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCccccccccc
Q psy933 211 IAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLA 280 (330)
Q Consensus 211 I~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~ 280 (330)
+. .....++++++|+++++.|++.|+||||++|+|+|+++|+++|+.+|++++++|||||++|++
T Consensus 478 ~~-----~~~~~d~~Lq~i~~eS~~ie~~yghyfD~iIvN~dld~t~~eL~~~iekl~tepqWVPvsWv~ 542 (542)
T KOG0609|consen 478 IV-----AKQFTDEDLQEIIDESARIEQQYGHYFDLIIVNSDLDKTFRELKTAIEKLRTEPQWVPVSWVY 542 (542)
T ss_pred cc-----cccCCHHHHHHHHHHHHHHHHHhhhheeEEEEcCcHHHHHHHHHHHHHHhccCCceeeeeccC
Confidence 11 122357889999999999999999999999999999999999999999999999999999985
No 22
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=99.12 E-value=4.6e-11 Score=113.12 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=76.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeec
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHE 166 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~ 166 (330)
+|+|+||+|||||+|+.+|.+.++.. +...+++||++|+++|.+|++|||++.-++..... -
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~----------v 70 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYS----------A 70 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEc----------H
Confidence 48999999999999999999987632 44457999999999999999999999665543221 1
Q ss_pred CccccccHHHHHHHHHhCCeEEEEeCHHH-HHHHHh
Q psy933 167 DAMYGTKLETIRRIHQEGKIAILDVEPQA-LKILRT 201 (330)
Q Consensus 167 g~~YGts~~~i~~v~~~gk~~vldv~~~~-v~~L~~ 201 (330)
+++|+.....|+++.++|+++|+.-...- ++.|-.
T Consensus 71 ~~f~~~a~~~i~~~~~~g~~pi~vGGTg~Yi~all~ 106 (287)
T TIGR00174 71 ADFQTLALNAIADITARGKIPLLVGGTGLYLKALLE 106 (287)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHc
Confidence 56788999999999999999988654422 455544
No 23
>PRK04040 adenylate kinase; Provisional
Probab=98.98 E-value=5e-09 Score=93.53 Aligned_cols=148 Identities=18% Similarity=0.242 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchh-hHHhccceeeE-------Ee
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEY-------GT 164 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~-~~i~~~~fle~-------~~ 164 (330)
.+.|+|+|++||||||+++.|.+.++..+. +++..++. .......+... ..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~---------------------~~~~g~~~~~~a~~~g~~~~~d~~r~l~~ 60 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYK---------------------IVNFGDVMLEVAKEEGLVEHRDEMRKLPP 60 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCe---------------------EEecchHHHHHHHHcCCCCCHHHHhhCCh
Confidence 368999999999999999999998752121 12111111 11111111000 00
Q ss_pred ecCccccccHHHHHHHH--HhCCeEEEEeCHH-----H------HHHHHhcCCCCEEEEEccCcccccc-----------
Q psy933 165 HEDAMYGTKLETIRRIH--QEGKIAILDVEPQ-----A------LKILRTGEFSPFVVFIAAPQLQNLS----------- 220 (330)
Q Consensus 165 ~~g~~YGts~~~i~~v~--~~gk~~vldv~~~-----~------v~~L~~~~~~p~vIfI~pps~~~l~----------- 220 (330)
.....++. .+.+.+. ..++.+|+|-+.- | ...++...+..+++|..||+ +.++
T Consensus 61 ~~~~~~~~--~a~~~i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~-~i~~Rrl~d~~R~R~ 137 (188)
T PRK04040 61 EEQKELQR--EAAERIAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPD-EILMRRLRDETRRRD 137 (188)
T ss_pred hhhHHHHH--HHHHHHHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHH-HHHHHHhcccccCCC
Confidence 00001111 1222222 3456677776431 1 33445445555666666665 3332
Q ss_pred -CchHHHHHHHHHHHHHHh---hccccceEEEecCC--HHHHHHHHHHHH
Q psy933 221 -DYDGSLEKLAKESDILKS---AYEHFFDLTVVNND--IEETIGILEKAI 264 (330)
Q Consensus 221 -~~~e~~~rl~~~~~~ie~---~~~~~fD~vI~N~d--le~a~~~L~~~i 264 (330)
++.+.+++..+....... .+.+.|+++|+|++ +++|+++|.++|
T Consensus 138 ~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 138 VETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 123445443332222212 23466999999999 999999999887
No 24
>PLN02840 tRNA dimethylallyltransferase
Probab=98.93 E-value=6.5e-10 Score=110.01 Aligned_cols=90 Identities=14% Similarity=0.239 Sum_probs=74.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT 164 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~ 164 (330)
+++|+|+||+|||||||+..|.+.+... +...++++|++|...|.+|+.||+++.-+..+....+.|.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~---- 96 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF---- 96 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH----
Confidence 3589999999999999999999987632 3445789999999999999999999988877655555554
Q ss_pred ecCccccccHHHHHHHHHhCCeEEEEeC
Q psy933 165 HEDAMYGTKLETIRRIHQEGKIAILDVE 192 (330)
Q Consensus 165 ~~g~~YGts~~~i~~v~~~gk~~vldv~ 192 (330)
......|+++.++|+++|+.-.
T Consensus 97 ------~~A~~~I~~i~~rgkiPIvVGG 118 (421)
T PLN02840 97 ------DDARRATQDILNRGRVPIVAGG 118 (421)
T ss_pred ------HHHHHHHHHHHhcCCCEEEEcC
Confidence 4458899999999999988654
No 25
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.89 E-value=9.3e-09 Score=91.52 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=90.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhc--cceeeEEe---ecC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAA--NQYLEYGT---HED 167 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~--~~fle~~~---~~g 167 (330)
++.|+|.||+||||||+++.|.+.+.. .+ ...++|+.|+ ++..| +.|...+.. +.+..+.. +..
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~-~~-~~~~~~~~p~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQ-QG-RDVVFTREPG-GTPLG--------EKLRELLLDPNEEMDDKTELLLFYA 71 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-cC-CceeEeeCCC-CChHH--------HHHHHHHhccccCCCHHHHHHHHHH
Confidence 578999999999999999999987642 22 3456777776 33332 344444431 22222221 224
Q ss_pred ccccccHHHHHHHHHhCCeEEEEe---------------CHHHHHHHHhc---CC-CCEEEEEccCccc---cccCch--
Q psy933 168 AMYGTKLETIRRIHQEGKIAILDV---------------EPQALKILRTG---EF-SPFVVFIAAPQLQ---NLSDYD-- 223 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vldv---------------~~~~v~~L~~~---~~-~p~vIfI~pps~~---~l~~~~-- 223 (330)
+.|+.....+...+++|+++|+|= +..-+..+... .+ .-++||+..|.-. .+....
T Consensus 72 ~r~~~~~~~i~~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~Rl~~R~~~ 151 (205)
T PRK00698 72 ARAQHLEEVIKPALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLARIRARGEL 151 (205)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 557777777777788899999982 12222233321 12 2367888776422 121110
Q ss_pred H--------HHHHHHHHHHHHHhhccccceEE-EecC-CHHHHHHHHHHHHHHh
Q psy933 224 G--------SLEKLAKESDILKSAYEHFFDLT-VVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 224 e--------~~~rl~~~~~~ie~~~~~~fD~v-I~N~-dle~a~~~L~~~i~~~ 267 (330)
+ -.+++.+....+...+ .++.+ |.++ ++++..+++..+|.++
T Consensus 152 ~~~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~Id~~~~~e~v~~~i~~~i~~~ 203 (205)
T PRK00698 152 DRIEQEGLDFFERVREGYLELAEKE--PERIVVIDASQSLEEVHEDILAVIKAW 203 (205)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHhC--CCeEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 1 1123333233332211 13444 4444 8999999999988764
No 26
>PRK06762 hypothetical protein; Provisional
Probab=98.77 E-value=1.1e-07 Score=82.24 Aligned_cols=143 Identities=13% Similarity=0.157 Sum_probs=79.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCc-cc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDA-MY 170 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~-~Y 170 (330)
|++.|+|+|++||||||+++.|.+.++. .+.+++.+.+...+..+ .. ..+. .+
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~---------------------~~~~i~~D~~r~~l~~~----~~-~~~~~~~ 54 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGR---------------------GTLLVSQDVVRRDMLRV----KD-GPGNLSI 54 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEecHHHHHHHhccc----cC-CCCCcCH
Confidence 4578999999999999999999987642 13344555554433211 00 0011 11
Q ss_pred cccHHHHHHHHHhCCeEEEEeCH--H----HHHHHHhcCC-CCEEEEEccCcccccc---C-------chHHHHHHHHHH
Q psy933 171 GTKLETIRRIHQEGKIAILDVEP--Q----ALKILRTGEF-SPFVVFIAAPQLQNLS---D-------YDGSLEKLAKES 233 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~~--~----~v~~L~~~~~-~p~vIfI~pps~~~l~---~-------~~e~~~rl~~~~ 233 (330)
-.-...++..++.|..+|+|-.. . -++.|..... ...+||+.+|--..++ . .++.++++.++.
T Consensus 55 ~~~~~~~~~~~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~ 134 (166)
T PRK06762 55 DLIEQLVRYGLGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPH 134 (166)
T ss_pred HHHHHHHHHHHhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhc
Confidence 11123344456779888887642 1 1445554433 3468899887322221 0 123333333332
Q ss_pred HHHHhhccccceEEEecC--CHHHHHHHHHHHHH
Q psy933 234 DILKSAYEHFFDLTVVNN--DIEETIGILEKAIE 265 (330)
Q Consensus 234 ~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~ 265 (330)
+.+ ..+|.+|+++ ++++.++++...+.
T Consensus 135 ~~~-----~~~~~~~~~~~~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 135 DTL-----GVIGETIFTDNLSLKDIFDAILTDIG 163 (166)
T ss_pred CCc-----CCCCeEEecCCCCHHHHHHHHHHHhc
Confidence 222 3468888666 78888887776653
No 27
>PRK00098 GTPase RsgA; Reviewed
Probab=98.68 E-value=1.1e-08 Score=97.62 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=72.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc-------ccccCCCCcccC------------CeeEEEecccchhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP-------HTTRSPRSDEEN------------GRAYYFISHDEMMS 152 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~-------~TTR~pr~~E~~------------G~dy~fvs~~~f~~ 152 (330)
.+++++|+|+||||||||++.|+..... -...++ ||||.++..+.+ +.+|++++.+++..
T Consensus 163 ~gk~~~~~G~sgvGKStlin~l~~~~~~-~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 241 (298)
T PRK00098 163 AGKVTVLAGQSGVGKSTLLNALAPDLEL-KTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEH 241 (298)
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcCC-CCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHH
Confidence 4679999999999999999999876553 344454 799988776665 45566777777776
Q ss_pred HHhc-cceeeEEeecC-ccccccHHHHHHHHHhCCe
Q psy933 153 DIAA-NQYLEYGTHED-AMYGTKLETIRRIHQEGKI 186 (330)
Q Consensus 153 ~i~~-~~fle~~~~~g-~~YGts~~~i~~v~~~gk~ 186 (330)
.+.. ..|.+...|.+ .+||++.++|++++++|++
T Consensus 242 ~f~~~~~~~~~c~f~~c~h~~ep~c~v~~a~~~g~i 277 (298)
T PRK00098 242 YFPEFRPLSGDCKFRNCTHLHEPGCAVKAAVEEGEI 277 (298)
T ss_pred HHHHHHHHhCCCCCCCCcCCCCCCChHHHHHHcCCC
Confidence 5544 45666666666 5899999999999999973
No 28
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.66 E-value=1.4e-08 Score=96.93 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=76.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC-------CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEee
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD-------KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH 165 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~-------~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~ 165 (330)
+++|+|+||+|||||.|+-.|++.+.+ .+..-++..|.+|...|..|+.||+++--+..+....+.|.+-+
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a-- 81 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGKAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEA-- 81 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHH--
Confidence 358999999999999999999988432 12223778999999999999999999988777666666666544
Q ss_pred cCccccccHHHHHHHHHhCCeEEEEeCHHH-HHHHH
Q psy933 166 EDAMYGTKLETIRRIHQEGKIAILDVEPQA-LKILR 200 (330)
Q Consensus 166 ~g~~YGts~~~i~~v~~~gk~~vldv~~~~-v~~L~ 200 (330)
...|+++.+.|+++|+.-...- ++.|-
T Consensus 82 --------~~~i~~i~~~gk~PilvGGTglYi~all 109 (300)
T PRK14729 82 --------LKIIKELRQQKKIPIFVGGSAFYFKHLK 109 (300)
T ss_pred --------HHHHHHHHHCCCCEEEEeCchHHHHHHH
Confidence 7888999999999988665422 44443
No 29
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.63 E-value=4.4e-07 Score=79.70 Aligned_cols=25 Identities=24% Similarity=0.618 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+.|+|+||+|+|||||++.|....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3579999999999999999998864
No 30
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.63 E-value=3.8e-07 Score=78.68 Aligned_cols=145 Identities=23% Similarity=0.309 Sum_probs=74.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC-c-cc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED-A-MY 170 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g-~-~Y 170 (330)
++.|+|+||+|||||||++.|.+...- .|++.+.+.........-+.....| . +.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~-----------------------~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~ 60 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGY-----------------------DFIDTDHLIEARAGKSIPEIFEEEGEAAFR 60 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCC-----------------------CEEEChHHHHHHcCCCHHHHHHHHCHHHHH
Confidence 468999999999999999999987632 1223222221110000000000001 0 11
Q ss_pred cccHHHHHHHHHhCCeEEEEe------CHHHHHHHHhcCCCCEEEEEccCcccc---ccC-----------chHHHHHHH
Q psy933 171 GTKLETIRRIHQEGKIAILDV------EPQALKILRTGEFSPFVVFIAAPQLQN---LSD-----------YDGSLEKLA 230 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv------~~~~v~~L~~~~~~p~vIfI~pps~~~---l~~-----------~~e~~~rl~ 230 (330)
-.....+.+++.... +|+.. .......|+. ..++|||.+|.... +.. ..+.+.++.
T Consensus 61 ~~~~~~~~~l~~~~~-~vi~~g~~~~~~~~~r~~l~~---~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~ 136 (175)
T PRK00131 61 ELEEEVLAELLARHN-LVISTGGGAVLREENRALLRE---RGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLY 136 (175)
T ss_pred HHHHHHHHHHHhcCC-CEEEeCCCEeecHHHHHHHHh---CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHH
Confidence 111233445554333 34432 2333444432 35788888764221 111 011222233
Q ss_pred HHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933 231 KESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEEL 267 (330)
Q Consensus 231 ~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~ 267 (330)
.... ..|...+|++|..+ +++++.+.|.+.|+.+
T Consensus 137 ~~~~---~~~~~~~dl~idt~~~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 137 EERD---PLYEEVADITVETDGRSPEEVVNEILEKLEAA 172 (175)
T ss_pred HHHH---HHHHhhcCeEEeCCCCCHHHHHHHHHHHHHhh
Confidence 2222 23567799999755 8999999999999765
No 31
>PLN02748 tRNA dimethylallyltransferase
Probab=98.60 E-value=2.7e-08 Score=100.00 Aligned_cols=92 Identities=16% Similarity=0.247 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC--------CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD--------KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 163 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~--------~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~ 163 (330)
.++.|+|+||+|+|||+|+..|+..+.. .+..-++..|.+|...|..|+.||+++.-........+.|...+
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A 100 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHA 100 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHH
Confidence 4568999999999999999999998752 24444789999999999999999999887776666666666544
Q ss_pred eecCccccccHHHHHHHHHhCCeEEEEeCH
Q psy933 164 THEDAMYGTKLETIRRIHQEGKIAILDVEP 193 (330)
Q Consensus 164 ~~~g~~YGts~~~i~~v~~~gk~~vldv~~ 193 (330)
...|+++.+.|+++||.-..
T Consensus 101 ----------~~~I~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 101 ----------VPLIEEILSRNGLPVIVGGT 120 (468)
T ss_pred ----------HHHHHHHHhcCCCeEEEcCh
Confidence 78889999999998886654
No 32
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=98.59 E-value=3.8e-07 Score=80.12 Aligned_cols=142 Identities=23% Similarity=0.407 Sum_probs=83.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc----ceeeEEeecCc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN----QYLEYGTHEDA 168 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~----~fle~~~~~g~ 168 (330)
.+.|+|+|+.|+|||||.+.|++... |.|+|.+..-+....- -|-++|+- .
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~-----------------------~~F~D~D~~Ie~~~g~sI~eIF~~~GE~--~ 56 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALN-----------------------LPFIDTDQEIEKRTGMSIAEIFEEEGEE--G 56 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcC-----------------------CCcccchHHHHHHHCcCHHHHHHHHhHH--H
Confidence 46899999999999999999998763 4566544322211111 12222210 0
Q ss_pred cccccHHHHHHHHHhCCeEEEE------eCHHHHHHHHhcCCCCEEEEEccCcccccc--------------Cc-hHHHH
Q psy933 169 MYGTKLETIRRIHQEGKIAILD------VEPQALKILRTGEFSPFVVFIAAPQLQNLS--------------DY-DGSLE 227 (330)
Q Consensus 169 ~YGts~~~i~~v~~~gk~~vld------v~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------------~~-~e~~~ 227 (330)
+--.-...+++++..+. +|+- ++.+....|+..+ ++||+..| ++.+. .. .+.++
T Consensus 57 FR~~E~~vl~~l~~~~~-~ViaTGGG~v~~~enr~~l~~~g---~vv~L~~~-~e~l~~Rl~~~~~RPll~~~~~~~~l~ 131 (172)
T COG0703 57 FRRLETEVLKELLEEDN-AVIATGGGAVLSEENRNLLKKRG---IVVYLDAP-FETLYERLQRDRKRPLLQTEDPREELE 131 (172)
T ss_pred HHHHHHHHHHHHhhcCC-eEEECCCccccCHHHHHHHHhCC---eEEEEeCC-HHHHHHHhccccCCCcccCCChHHHHH
Confidence 11122345556665553 4432 3455566666654 78888875 33332 01 13456
Q ss_pred HHHHHHHHHHhhccccceEEEecCC-HHHHHHHHHHHHHHh
Q psy933 228 KLAKESDILKSAYEHFFDLTVVNND-IEETIGILEKAIEEL 267 (330)
Q Consensus 228 rl~~~~~~ie~~~~~~fD~vI~N~d-le~a~~~L~~~i~~~ 267 (330)
.+.++..-+ |....|+++..++ .++.++++...+...
T Consensus 132 ~L~~~R~~~---Y~e~a~~~~~~~~~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 132 ELLEERQPL---YREVADFIIDTDDRSEEVVEEILEALEGS 169 (172)
T ss_pred HHHHHHHHH---HHHhCcEEecCCCCcHHHHHHHHHHHHHh
Confidence 666665543 7777899998873 368888888777643
No 33
>PRK13946 shikimate kinase; Provisional
Probab=98.53 E-value=9.6e-07 Score=78.20 Aligned_cols=144 Identities=20% Similarity=0.289 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc---c-eeeEEeecC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN---Q-YLEYGTHED 167 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~---~-fle~~~~~g 167 (330)
..+.|+|+|++||||||+++.|.+.+.- .|++.+........- + |-++++ .
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~-----------------------~~id~D~~~~~~~g~~~~e~~~~~ge--~ 63 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGL-----------------------PFLDADTEIERAARMTIAEIFAAYGE--P 63 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCC-----------------------CeECcCHHHHHHhCCCHHHHHHHHCH--H
Confidence 5578999999999999999999987531 133332211111100 0 001110 0
Q ss_pred ccccccHHHHHHHHHhCCeEEEE------eCHHHHHHHHhcCCCCEEEEEccCcc---ccccCc-----------hHHHH
Q psy933 168 AMYGTKLETIRRIHQEGKIAILD------VEPQALKILRTGEFSPFVVFIAAPQL---QNLSDY-----------DGSLE 227 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vld------v~~~~v~~L~~~~~~p~vIfI~pps~---~~l~~~-----------~e~~~ 227 (330)
.+.-.....+.++++.+. ||+. +.++..+.|+. ..++|||..|.- +.+... .+.++
T Consensus 64 ~~~~~e~~~l~~l~~~~~-~Vi~~ggg~~~~~~~r~~l~~---~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~ 139 (184)
T PRK13946 64 EFRDLERRVIARLLKGGP-LVLATGGGAFMNEETRAAIAE---KGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLA 139 (184)
T ss_pred HHHHHHHHHHHHHHhcCC-eEEECCCCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHH
Confidence 111122445555665554 4443 34455555554 457899987632 122110 12234
Q ss_pred HHHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933 228 KLAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEELH 268 (330)
Q Consensus 228 rl~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~~ 268 (330)
++.+.... .|. .+|++|..+ +++++++.|...|....
T Consensus 140 ~~~~~R~~---~y~-~~dl~i~~~~~~~~~~~~~i~~~i~~~~ 178 (184)
T PRK13946 140 RLMEERYP---VYA-EADLTVASRDVPKEVMADEVIEALAAYL 178 (184)
T ss_pred HHHHHHHH---HHH-hCCEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 44443332 244 378888655 88999999999887654
No 34
>PLN02165 adenylate isopentenyltransferase
Probab=98.48 E-value=8.2e-08 Score=92.58 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=65.9
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCc--------cccccccccCCCCcccCCeeEEEecccchhh-HHhcccee
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKY--------AYPVPHTTRSPRSDEENGRAYYFISHDEMMS-DIAANQYL 160 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f--------~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~-~i~~~~fl 160 (330)
+..+++|+|+||+|||||+|+..|+..++..+ ....+.+|-+|...|..|+.||.++.-.... ....+.|.
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence 34567999999999999999999998865222 2335678889999999999988876433221 12222332
Q ss_pred eEEeecCccccccHHHHHHHHHhCCeEEEEeCH
Q psy933 161 EYGTHEDAMYGTKLETIRRIHQEGKIAILDVEP 193 (330)
Q Consensus 161 e~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~ 193 (330)
......|+++.+.|+.+|+.-..
T Consensus 120 ----------~~a~~~I~~i~~~~~~PI~vGGT 142 (334)
T PLN02165 120 ----------SLASLSISEITSRQKLPIVAGGS 142 (334)
T ss_pred ----------HHHHHHHHHHHHCCCcEEEECCh
Confidence 23366778888889988876543
No 35
>PRK13947 shikimate kinase; Provisional
Probab=98.43 E-value=2.1e-06 Score=74.37 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+|++||||||++++|++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 599999999999999999998764
No 36
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=1.6e-07 Score=89.54 Aligned_cols=91 Identities=20% Similarity=0.254 Sum_probs=75.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCc--------cccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKY--------AYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT 164 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f--------~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~ 164 (330)
.+.|+|+||+|||||.|+-.|++.++... ..-+...|-+|...|..|+.||.++.-+..+.....+|.+-.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a- 81 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA- 81 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH-
Confidence 46899999999999999999999977522 233678899999999999999999988877777777776554
Q ss_pred ecCccccccHHHHHHHHHhCCeEEEEeCH
Q psy933 165 HEDAMYGTKLETIRRIHQEGKIAILDVEP 193 (330)
Q Consensus 165 ~~g~~YGts~~~i~~v~~~gk~~vldv~~ 193 (330)
...|.++.++||++|+.-..
T Consensus 82 ---------~~~i~~i~~rgk~pIlVGGT 101 (308)
T COG0324 82 ---------LAAIDDILARGKLPILVGGT 101 (308)
T ss_pred ---------HHHHHHHHhCCCCcEEEccH
Confidence 78899999999999887654
No 37
>PRK13948 shikimate kinase; Provisional
Probab=98.40 E-value=3.9e-06 Score=74.68 Aligned_cols=140 Identities=18% Similarity=0.230 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccch-hhHHh---ccceeeEEeecCc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEM-MSDIA---ANQYLEYGTHEDA 168 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f-~~~i~---~~~fle~~~~~g~ 168 (330)
++.|+|+|++||||||+.+.|.+... +.|++.+.+ ++..- ..-|-++|+ ..
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg-----------------------~~~iD~D~~ie~~~g~si~~if~~~Ge--~~ 64 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALM-----------------------LHFIDTDRYIERVTGKSIPEIFRHLGE--AY 64 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcC-----------------------CCEEECCHHHHHHHhCCHHHHHHHhCH--HH
Confidence 47899999999999999999988753 224443322 11110 011212211 00
Q ss_pred cccccHHHHHHHHHhCCeEEEE------eCHHHHHHHHhcCCCCEEEEEccCcccccc----C----------chHHHHH
Q psy933 169 MYGTKLETIRRIHQEGKIAILD------VEPQALKILRTGEFSPFVVFIAAPQLQNLS----D----------YDGSLEK 228 (330)
Q Consensus 169 ~YGts~~~i~~v~~~gk~~vld------v~~~~v~~L~~~~~~p~vIfI~pps~~~l~----~----------~~e~~~r 228 (330)
+--.-...+++++..+. +|+. ++++....|+.. ..+|||..|. +.+. . ..+.+.+
T Consensus 65 fR~~E~~~l~~l~~~~~-~VIa~GgG~v~~~~n~~~l~~~---g~vV~L~~~~-e~l~~Rl~~~~RPll~~~~~~~~l~~ 139 (182)
T PRK13948 65 FRRCEAEVVRRLTRLDY-AVISLGGGTFMHEENRRKLLSR---GPVVVLWASP-ETIYERTRPGDRPLLQVEDPLGRIRT 139 (182)
T ss_pred HHHHHHHHHHHHHhcCC-eEEECCCcEEcCHHHHHHHHcC---CeEEEEECCH-HHHHHHhcCCCCCCCCCCChHHHHHH
Confidence 11122333455554433 3333 456666666653 4577777552 3221 0 1124455
Q ss_pred HHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 229 LAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 229 l~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
+.++... -|.. .|++|.++ +.++.+++|.+.+..
T Consensus 140 l~~~R~~---~Y~~-a~~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 140 LLNEREP---VYRQ-ATIHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred HHHHHHH---HHHh-CCEEEECCCCCHHHHHHHHHHHHHH
Confidence 5554443 3643 89999866 788999988888765
No 38
>PRK04182 cytidylate kinase; Provisional
Probab=98.39 E-value=2e-06 Score=74.63 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=23.0
Q ss_pred ccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933 242 HFFDLTVVNN--DIEETIGILEKAIEELH 268 (330)
Q Consensus 242 ~~fD~vI~N~--dle~a~~~L~~~i~~~~ 268 (330)
+.+|.+|.++ +++++++.|.+.+.+..
T Consensus 147 ~~~d~~idt~~~~~~~~~~~I~~~~~~~~ 175 (180)
T PRK04182 147 SIYDLVINTSRWDPEGVFDIILTAIDKLL 175 (180)
T ss_pred ccccEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 6799999876 89999999999887654
No 39
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.38 E-value=2e-06 Score=79.63 Aligned_cols=149 Identities=17% Similarity=0.263 Sum_probs=82.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccccH
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKL 174 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~ 174 (330)
+|+|+|++||||||+++.|.+.+.. .|.+++.++.+.+...... +-+ .+.........
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~------------------~~~~v~~i~~D~lr~~~~~--~~~--~~e~~~~~~~~ 58 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE------------------KNIDVIILGTDLIRESFPV--WKE--KYEEFIRDSTL 58 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH------------------cCCceEEEccHHHHHHhHH--hhH--HhHHHHHHHHH
Confidence 4899999999999999999987532 1334555655544332210 000 01111122334
Q ss_pred HHHHHHHHhCCeEEEEeCH--HHH-HH----HHhcCCCCEEEEEccCccccccC---------chHHHHHHHHHHHHHHh
Q psy933 175 ETIRRIHQEGKIAILDVEP--QAL-KI----LRTGEFSPFVVFIAAPQLQNLSD---------YDGSLEKLAKESDILKS 238 (330)
Q Consensus 175 ~~i~~v~~~gk~~vldv~~--~~v-~~----L~~~~~~p~vIfI~pps~~~l~~---------~~e~~~rl~~~~~~ie~ 238 (330)
..++..+++|..+|+|-.. .+. .. .+..+....+||+.+|. +.+.+ .++.+.++....+....
T Consensus 59 ~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~-e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~ 137 (249)
T TIGR03574 59 YLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPL-DTLLRRNIERGEKIPNEVIKDMYEKFDEPGT 137 (249)
T ss_pred HHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCH-HHHHHHHHhCCCCCCHHHHHHHHHhhCCCCC
Confidence 5677888889988888653 111 12 23344455678998773 33211 12233444433322111
Q ss_pred hc-cccceEEEecC---CHHHHHHHHHHHHHH
Q psy933 239 AY-EHFFDLTVVNN---DIEETIGILEKAIEE 266 (330)
Q Consensus 239 ~~-~~~fD~vI~N~---dle~a~~~L~~~i~~ 266 (330)
.| +...+++|..+ +.++++++|...+..
T Consensus 138 ~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 138 KYSWDLPDLTIDTTKKIDYNEILEEILEISEN 169 (249)
T ss_pred CCCccCceEEecCCCCCCHHHHHHHHHHHhhc
Confidence 22 24477777664 557888888876643
No 40
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.34 E-value=1.7e-06 Score=75.52 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
.+..|+|+|++|+||||+++.|...... .|.+..+++.+.+.+.+..+.-.... -....+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~------------------~g~~v~~id~D~~~~~~~~~~~~~~~-~r~~~~~ 63 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE------------------AGYPVEVLDGDAVRTNLSKGLGFSKE-DRDTNIR 63 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCeEEEEcCccHHHHHhcCCCCChh-hHHHHHH
Confidence 3568999999999999999999876531 12344566655554443322100000 0000111
Q ss_pred ccHHHHHH-HHHhCCeEEEEeC---HHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHH--HHH-------Hh
Q psy933 172 TKLETIRR-IHQEGKIAILDVE---PQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKES--DIL-------KS 238 (330)
Q Consensus 172 ts~~~i~~-v~~~gk~~vldv~---~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--~~i-------e~ 238 (330)
.. ..+.. ....|.+++++.. ....+.++.......+|||..| .+.+..... +-+.+.. +++ ..
T Consensus 64 ~~-~~~a~~~~~~g~~vi~~~~~~~~~~~~~l~~~~~~~~~v~l~~~-~e~~~~R~~--~~l~~~~~~~~i~~~~~~~~~ 139 (175)
T PRK00889 64 RI-GFVANLLTRHGVIVLVSAISPYRETREEVRANIGNFLEVFVDAP-LEVCEQRDV--KGLYAKARAGEIKHFTGIDDP 139 (175)
T ss_pred HH-HHHHHHHHhCCCEEEEecCCCCHHHHHHHHhhcCCeEEEEEcCC-HHHHHHhCc--ccHHHHHHcCCCCCCcccCCC
Confidence 11 11222 3355888777643 2334555554445678999987 333221110 0012111 001 11
Q ss_pred hcc-ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 239 AYE-HFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 239 ~~~-~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
-|. ...|++|..+ +++++++++.+.++.
T Consensus 140 ~~~p~~ad~~i~~~~~~~~~~~~~i~~~l~~ 170 (175)
T PRK00889 140 YEPPLNPEVECRTDLESLEESVDKVLQKLEE 170 (175)
T ss_pred CCCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 132 4567777654 799999999998864
No 41
>PRK01184 hypothetical protein; Provisional
Probab=98.32 E-value=7.1e-06 Score=72.18 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=47.2
Q ss_pred CCeEEEEeC--HHHHHHHHhcCC-CCEEEEEccCcccccc---Cc--------hHHHH-HHHHHHHHHHhhccccceEEE
Q psy933 184 GKIAILDVE--PQALKILRTGEF-SPFVVFIAAPQLQNLS---DY--------DGSLE-KLAKESDILKSAYEHFFDLTV 248 (330)
Q Consensus 184 gk~~vldv~--~~~v~~L~~~~~-~p~vIfI~pps~~~l~---~~--------~e~~~-rl~~~~~~ie~~~~~~fD~vI 248 (330)
+..+|+|.- +.-+..++.... ..++|+|.+|....+. .. .+++. ++..+...-....-...|++|
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~~~~~~~~ad~vI 159 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWGIGEVIALADYMI 159 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccCHHHHHHhcCEEE
Confidence 577788863 333455544322 3478899877433221 10 11221 111110000111235689999
Q ss_pred ecC-CHHHHHHHHHHHHHHhc
Q psy933 249 VNN-DIEETIGILEKAIEELH 268 (330)
Q Consensus 249 ~N~-dle~a~~~L~~~i~~~~ 268 (330)
.|+ +++++.+++..+++.+.
T Consensus 160 ~N~~~~~~l~~~v~~~~~~~~ 180 (184)
T PRK01184 160 VNDSTLEEFRARVRKLLERIL 180 (184)
T ss_pred eCCCCHHHHHHHHHHHHHHHh
Confidence 988 99999999999988754
No 42
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.31 E-value=2.3e-06 Score=75.17 Aligned_cols=86 Identities=21% Similarity=0.259 Sum_probs=48.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc------ceeeEEeecC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN------QYLEYGTHED 167 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~------~fle~~~~~g 167 (330)
+.|+|.||.||||||++++|.+.++. -+..+ ++++.|+.++. | +.+....... .+.++.-+..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~-~g~~v-~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEA-RGYEV-VLTREPGGTPI-G--------EAIRELLLDPEDEKMDPRAELLLFAA 69 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-cCCeE-EEEeCCCCCch-H--------HHHHHHHhccCccCCCHHHHHHHHHH
Confidence 36899999999999999999988742 22223 56666654321 1 1222222211 1111111122
Q ss_pred ccccccHHHHHHHHHhCCeEEEE
Q psy933 168 AMYGTKLETIRRIHQEGKIAILD 190 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vld 190 (330)
+.+....+.+...+..|.++|+|
T Consensus 70 ~r~~~~~~~~~~~~~~~~~vi~D 92 (200)
T cd01672 70 DRAQHVEEVIKPALARGKIVLSD 92 (200)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEC
Confidence 33444445555566788888888
No 43
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.30 E-value=8.4e-07 Score=74.25 Aligned_cols=97 Identities=23% Similarity=0.395 Sum_probs=61.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceee---EEeecCcccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLE---YGTHEDAMYG 171 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle---~~~~~g~~YG 171 (330)
.|+++||+||||||+++.|.+..+ +.+++.+.+...+.....-. +....+..+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----------------------~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----------------------AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQ 57 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----------------------EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----------------------CEEEeHHHHHHHHcccccccchhHHHHHHHHHH
Confidence 489999999999999999987753 45567776665554432221 1111222344
Q ss_pred ccHHHHHHHHHhCCeEEEEeCH---HHH----HHHHhcCCCCEEEEEccC
Q psy933 172 TKLETIRRIHQEGKIAILDVEP---QAL----KILRTGEFSPFVVFIAAP 214 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~---~~v----~~L~~~~~~p~vIfI~pp 214 (330)
.-.+.++..++.|..+|+|-.. ... ..++..+....+|++.+|
T Consensus 58 ~~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~ 107 (143)
T PF13671_consen 58 ILNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAP 107 (143)
T ss_dssp HHHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHH
T ss_pred HHHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECC
Confidence 5556777888999999998432 222 223344556778888875
No 44
>PRK14530 adenylate kinase; Provisional
Probab=98.29 E-value=2.4e-05 Score=70.79 Aligned_cols=166 Identities=20% Similarity=0.304 Sum_probs=81.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCcccc-ccccccCCC------CcccCCee--E----EEecccchhh----HHh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYP-VPHTTRSPR------SDEENGRA--Y----YFISHDEMMS----DIA 155 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~-v~~TTR~pr------~~E~~G~d--y----~fvs~~~f~~----~i~ 155 (330)
++.|+|+||+||||||++++|++.+. +... +..--|.-. .+...|.. | ..+..+.... .+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~--~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~ 80 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFG--VEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALS 80 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC--CeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45799999999999999999998864 2111 000001000 00000000 0 0122222222 111
Q ss_pred -ccceeeEEeecCccccccHHHHHH---HHHhCCeEEEEeCHHHH-HHHHhcCCC-----CEEEEEccCcccccc-----
Q psy933 156 -ANQYLEYGTHEDAMYGTKLETIRR---IHQEGKIAILDVEPQAL-KILRTGEFS-----PFVVFIAAPQLQNLS----- 220 (330)
Q Consensus 156 -~~~fle~~~~~g~~YGts~~~i~~---v~~~gk~~vldv~~~~v-~~L~~~~~~-----p~vIfI~pps~~~l~----- 220 (330)
.+.||-- | |..+.+..+. ...-+.+++|+++.+.+ +++...... .+-+++.||+.+.+.
T Consensus 81 ~~~~~Ild----G--~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 154 (215)
T PRK14530 81 DADGFVLD----G--YPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGG 154 (215)
T ss_pred cCCCEEEc----C--CCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCC
Confidence 2234332 2 3333333332 22345667788887654 566654432 355667777654332
Q ss_pred -------CchHHH-HHHHH---HHHHHHhhccccceE-EEecC-CHHHHHHHHHHHHHH
Q psy933 221 -------DYDGSL-EKLAK---ESDILKSAYEHFFDL-TVVNN-DIEETIGILEKAIEE 266 (330)
Q Consensus 221 -------~~~e~~-~rl~~---~~~~ie~~~~~~fD~-vI~N~-dle~a~~~L~~~i~~ 266 (330)
+.++.+ +||.. ....+...|....-+ .|..+ ++++.++.|..+|.+
T Consensus 155 rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 155 ELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAIDD 213 (215)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 123334 34432 223344455443223 34333 899999999988864
No 45
>PRK08233 hypothetical protein; Provisional
Probab=98.28 E-value=1.2e-05 Score=69.91 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=22.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..|+|.|++|||||||++.|.+.++
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999998875
No 46
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.27 E-value=5e-06 Score=71.64 Aligned_cols=23 Identities=30% Similarity=0.654 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHhhCC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p 118 (330)
|+|+||+||||||+++.|.....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57999999999999999998753
No 47
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.27 E-value=4.4e-06 Score=79.09 Aligned_cols=104 Identities=12% Similarity=0.166 Sum_probs=61.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcccee---eEEeecCc-
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYL---EYGTHEDA- 168 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fl---e~~~~~g~- 168 (330)
++.|+|+||+||||||++++|.+.++ .+.++|.+.+..++....-. .|....+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~----------------------~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~ 59 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP----------------------KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDL 59 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC----------------------CCEEEeccHHHHHhcCCCcccccccChHHHHH
Confidence 46899999999999999999998764 13566666666554322100 00000011
Q ss_pred cccccHHHHHHHHHhCCeEEEEeCH---HHHHH----HHhcCCCCEEEEEccCccccc
Q psy933 169 MYGTKLETIRRIHQEGKIAILDVEP---QALKI----LRTGEFSPFVVFIAAPQLQNL 219 (330)
Q Consensus 169 ~YGts~~~i~~v~~~gk~~vldv~~---~~v~~----L~~~~~~p~vIfI~pps~~~l 219 (330)
.+..-...+.+.+..|..+|+|..+ .-... ++..+....+|++.+| .+.+
T Consensus 60 ~~~~~~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~-~e~~ 116 (300)
T PHA02530 60 VTKAQEAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVP-VEEL 116 (300)
T ss_pred HHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHH
Confidence 1223334456666789999998653 22222 2334455667888875 4444
No 48
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.25 E-value=6.9e-06 Score=71.82 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++..|+|+|++|+||||+++.|...+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 456999999999999999999988764
No 49
>KOG1384|consensus
Probab=98.24 E-value=1.4e-06 Score=83.09 Aligned_cols=101 Identities=23% Similarity=0.357 Sum_probs=80.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 163 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~ 163 (330)
+-+.|||+||+|+|||.|+-.|+..+|.. +......+|.++...|..|+.+|.+..-..+.....++|-.
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~-- 83 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFED-- 83 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHH--
Confidence 34799999999999999999999988753 33347789999999999999999988877776666666644
Q ss_pred eecCccccccHHHHHHHHHhCCeEEEEeCH-HHHHHHHhc
Q psy933 164 THEDAMYGTKLETIRRIHQEGKIAILDVEP-QALKILRTG 202 (330)
Q Consensus 164 ~~~g~~YGts~~~i~~v~~~gk~~vldv~~-~~v~~L~~~ 202 (330)
....+|+++...||++|+.-.. ..++.|-..
T Consensus 84 --------~a~~aie~I~~rgk~PIv~GGs~~yi~al~~~ 115 (348)
T KOG1384|consen 84 --------DASRAIEEIHSRGKLPIVVGGSNSYLQALLSK 115 (348)
T ss_pred --------HHHHHHHHHHhCCCCCEEeCCchhhHHHHhhc
Confidence 4478999999999999987664 445555544
No 50
>PRK13949 shikimate kinase; Provisional
Probab=98.18 E-value=1.6e-05 Score=69.68 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=21.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.|+|+||+|+|||||++.|.+.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999999875
No 51
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.18 E-value=8.2e-06 Score=73.46 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=24.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..|+|+||||||||||++.|...++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998765
No 52
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.16 E-value=1.2e-05 Score=69.88 Aligned_cols=24 Identities=29% Similarity=0.589 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..|+|+|++|+||||+++.|.+.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999875
No 53
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.14 E-value=1.7e-05 Score=68.34 Aligned_cols=23 Identities=22% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|.|++||||||+++.|.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998864
No 54
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.12 E-value=2e-05 Score=68.50 Aligned_cols=148 Identities=18% Similarity=0.315 Sum_probs=78.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecc-cchhhHHhcc-----ceeeEEeecCc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISH-DEMMSDIAAN-----QYLEYGTHEDA 168 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~-~~f~~~i~~~-----~fle~~~~~g~ 168 (330)
.|.|.||+||||||++++|++.+.- -+||- .-|.++.+.- +|-++++-+-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl-----------------------~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~ 58 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL-----------------------KLVSAGTIFREMARERGMSLEEFSRYAEEDPE 58 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC-----------------------ceeeccHHHHHHHHHcCCCHHHHHHHHhcCch
Confidence 5889999999999999999987642 22221 1233322211 12222221111
Q ss_pred cccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc-----C---chHHHHHHHHH--HH--HH
Q psy933 169 MYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS-----D---YDGSLEKLAKE--SD--IL 236 (330)
Q Consensus 169 ~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~-----~---~~e~~~rl~~~--~~--~i 236 (330)
. -.-.+.-+..+++...|||+-...|--. + ....+-||+++|-....+ + .++.+..+.+. ++ .-
T Consensus 59 i-D~~iD~rq~e~a~~~nvVlegrLA~Wi~-k--~~adlkI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY 134 (179)
T COG1102 59 I-DKEIDRRQKELAKEGNVVLEGRLAGWIV-R--EYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRY 134 (179)
T ss_pred h-hHHHHHHHHHHHHcCCeEEhhhhHHHHh-c--cccceEEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0012222223344666777776655322 2 455677999988433222 1 12222222211 11 11
Q ss_pred Hhhcc------ccceEEEecC--CHHHHHHHHHHHHHHhcC
Q psy933 237 KSAYE------HFFDLTVVNN--DIEETIGILEKAIEELHT 269 (330)
Q Consensus 237 e~~~~------~~fD~vI~N~--dle~a~~~L~~~i~~~~~ 269 (330)
..-|+ ..||.||... +.++.+.-|..++..+..
T Consensus 135 ~~~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid~~~~ 175 (179)
T COG1102 135 KKIYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAIDALSI 175 (179)
T ss_pred HHHhCCCCccceeeEEEEecccCCHHHHHHHHHHHHHhhcc
Confidence 12233 4689998766 888888888888877643
No 55
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.11 E-value=5e-05 Score=67.91 Aligned_cols=161 Identities=14% Similarity=0.200 Sum_probs=82.1
Q ss_pred ceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceee
Q psy933 82 YEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLE 161 (330)
Q Consensus 82 Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle 161 (330)
.+...++++ .+..|+|+|++|+|||||++.|....... |....+++.+.+...+..+ +.
T Consensus 14 ~~~~~~~~~-~~~~i~i~G~~GsGKSTla~~l~~~l~~~------------------~~~~~~ld~d~~~~~~~~~--~~ 72 (198)
T PRK03846 14 AQREQLHGH-KGVVLWFTGLSGSGKSTVAGALEEALHEL------------------GVSTYLLDGDNVRHGLCSD--LG 72 (198)
T ss_pred HHHHHhcCC-CCEEEEEECCCCCCHHHHHHHHHHHHHhC------------------CCCEEEEcCEeHHhhhhhc--CC
Confidence 333444433 45799999999999999999998764321 1112233333333222111 11
Q ss_pred EE-eecCccccccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcC-CCC-EEEEEccCccccccCchHHHHHHHHHH--
Q psy933 162 YG-THEDAMYGTKLETIRRIHQEGKIAILDVE---PQALKILRTGE-FSP-FVVFIAAPQLQNLSDYDGSLEKLAKES-- 233 (330)
Q Consensus 162 ~~-~~~g~~YGts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~-~~p-~vIfI~pps~~~l~~~~e~~~rl~~~~-- 233 (330)
|. +-....|-.-.+.....+..|.++|.+.. .+-...++..- -.+ ++||+..|. +.+.+.+. +.+....
T Consensus 73 ~~~~~~~~~~~~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~-e~~~~R~~--r~l~~~~~~ 149 (198)
T PRK03846 73 FSDADRKENIRRVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPL-AICEARDP--KGLYKKARA 149 (198)
T ss_pred cCcccHHHHHHHHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCH-HHHHhcCc--hhHHHHhhc
Confidence 10 00011121111223445567888887664 22233344321 124 479999874 33222111 1122211
Q ss_pred H------HHHhhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 234 D------ILKSAYE--HFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 234 ~------~ie~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
. .....|. ...|++|.++ ++++++++|.+.+..
T Consensus 150 ~~~~~l~~~r~~Y~~p~~ad~~Idt~~~~~~~vv~~Il~~l~~ 192 (198)
T PRK03846 150 GEIRNFTGIDSVYEAPESPEIHLDTGEQLVTNLVEQLLDYLRQ 192 (198)
T ss_pred CCccCcccccccCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 0 1112365 5678888754 789999998888764
No 56
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.11 E-value=1.4e-05 Score=69.98 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+.|+|+||+||||||++++|.+.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999875
No 57
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.11 E-value=3.4e-05 Score=69.34 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..|.|+||||||||||++.|.+.++
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998873
No 58
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.10 E-value=2.8e-06 Score=76.03 Aligned_cols=165 Identities=18% Similarity=0.158 Sum_probs=78.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCcccc----ccccccCCCC------cccCCeeEE----EecccchhhHHhccce
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYP----VPHTTRSPRS------DEENGRAYY----FISHDEMMSDIAANQY 159 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~----v~~TTR~pr~------~E~~G~dy~----fvs~~~f~~~i~~~~f 159 (330)
+.|+|+|++||||||+++.|.+ +. +... +.|.--.|.. -+.-|.++. .+++..+.+.+-.+..
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g--~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 79 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LG--APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPE 79 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cC--CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHH
Confidence 5799999999999999998876 32 2111 1110000000 000111111 2444444443333321
Q ss_pred eeEEeecCccccccHHHHHHHHHhC---CeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc---C----chHHH-HH
Q psy933 160 LEYGTHEDAMYGTKLETIRRIHQEG---KIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS---D----YDGSL-EK 228 (330)
Q Consensus 160 le~~~~~g~~YGts~~~i~~v~~~g---k~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~---~----~~e~~-~r 228 (330)
.-..--+--++... ..+.+.+++. +.+|+++..---..+. ...-.+|+|.+|.-..++ . +++++ +|
T Consensus 80 ~~~~L~~i~hP~v~-~~~~~~~~~~~~~~~vv~e~pll~e~~~~--~~~D~vi~V~a~~e~~~~Rl~~R~~~s~e~~~~r 156 (194)
T PRK00081 80 ARKKLEAILHPLIR-EEILEQLQEAESSPYVVLDIPLLFENGLE--KLVDRVLVVDAPPETQLERLMARDGLSEEEAEAI 156 (194)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHcccCCEEEEEehHhhcCCch--hhCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHH
Confidence 10000000122232 2333434333 5677776542111111 123477888877432221 1 22233 23
Q ss_pred HHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHH
Q psy933 229 LAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEE 266 (330)
Q Consensus 229 l~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~ 266 (330)
+..+.. ........|++|.|+ +++++.+++..++++
T Consensus 157 i~~Q~~--~~~~~~~ad~vI~N~g~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 157 IASQMP--REEKLARADDVIDNNGDLEELRKQVERLLQE 193 (194)
T ss_pred HHHhCC--HHHHHHhCCEEEECCCCHHHHHHHHHHHHHh
Confidence 332211 122345689999998 999999999988865
No 59
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.08 E-value=2.3e-05 Score=69.04 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=77.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
++..|+|+|++|+||||+++.|...++. .|....+++.+.+...+..+......... ..|-
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~------------------~~~~~~~l~~d~~r~~l~~~~~~~~~~~~-~~~~ 77 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES------------------KGYRVYVLDGDNVRHGLNKDLGFSEEDRK-ENIR 77 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH------------------cCCcEEEECChHHHhhhccccCCCHHHHH-HHHH
Confidence 4569999999999999999999877532 11122344444444332221100000000 0111
Q ss_pred ccHHHHHHHHHhCCeEEEEeCH---HHHHHHHhc--CCCCEEEEEccCccccccCchHHHHHHHHHH--------HHHHh
Q psy933 172 TKLETIRRIHQEGKIAILDVEP---QALKILRTG--EFSPFVVFIAAPQLQNLSDYDGSLEKLAKES--------DILKS 238 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~---~~v~~L~~~--~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--------~~ie~ 238 (330)
.-.......+.+|.++|++... .....++.. ....++||+..|- +.+.+.+. +.+.... .....
T Consensus 78 ~~~~~~~~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~-e~~~~R~~--~~l~~~~~~~~~~~l~~~~~ 154 (184)
T TIGR00455 78 RIGEVAKLFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPL-EVCEQRDP--KGLYKKARNGEIKGFTGIDS 154 (184)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCH-HHHHHhCc--hhHHHHHhcCCccCcccccC
Confidence 1112334466789999988752 222333332 1234578888763 33321111 1122211 11223
Q ss_pred hcc--ccceEEEecC--CHHHHHHHHHHH
Q psy933 239 AYE--HFFDLTVVNN--DIEETIGILEKA 263 (330)
Q Consensus 239 ~~~--~~fD~vI~N~--dle~a~~~L~~~ 263 (330)
.|. ...|++|.++ +++++++++.+.
T Consensus 155 ~y~~p~~adl~Idt~~~~~~~~~~~i~~~ 183 (184)
T TIGR00455 155 PYEAPENPEVVLDTDQNDREECVGQIIEK 183 (184)
T ss_pred CCCCCCCCcEEEECCCCCHHHHHHHHHHh
Confidence 343 5788999865 788888887654
No 60
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.08 E-value=1.3e-05 Score=67.81 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+||+|+|||||++.|.+.+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987753
No 61
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.06 E-value=4.9e-05 Score=72.94 Aligned_cols=147 Identities=14% Similarity=0.298 Sum_probs=78.3
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccc-hhhHH--hcccee-eEEeec
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE-MMSDI--AANQYL-EYGTHE 166 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~-f~~~i--~~~~fl-e~~~~~ 166 (330)
.+++.|+|+|++||||||+++.|.+.+.-. |++.+. +++.. .-.++. ++| .
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~-----------------------~id~D~~i~~~~G~~i~ei~~~~G--~ 185 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVP-----------------------FVELNREIEREAGLSVSEIFALYG--Q 185 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----------------------EEeHHHHHHHHhCCCHHHHHHHHC--H
Confidence 355799999999999999999998875321 121111 11000 000000 011 0
Q ss_pred CccccccHHHHHHHHHhCCeEEEEeCH------HHHHHHHhcCCCCEEEEEccCcc---ccccC--------c----hHH
Q psy933 167 DAMYGTKLETIRRIHQEGKIAILDVEP------QALKILRTGEFSPFVVFIAAPQL---QNLSD--------Y----DGS 225 (330)
Q Consensus 167 g~~YGts~~~i~~v~~~gk~~vldv~~------~~v~~L~~~~~~p~vIfI~pps~---~~l~~--------~----~e~ 225 (330)
..+.-.-...+.+++.....+|+.... ...+.+.. ..++|||..|.- +.+.. . .+.
T Consensus 186 ~~fr~~e~~~l~~ll~~~~~~VI~~Ggg~v~~~~~~~~l~~---~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~ 262 (309)
T PRK08154 186 EGYRRLERRALERLIAEHEEMVLATGGGIVSEPATFDLLLS---HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMED 262 (309)
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEECCCchhCCHHHHHHHHh---CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHH
Confidence 112223334455555544445554422 22333333 457899987632 12211 0 133
Q ss_pred HHHHHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHhcC
Q psy933 226 LEKLAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEELHT 269 (330)
Q Consensus 226 ~~rl~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~~~ 269 (330)
++++.+..... | ..+|++|.++ ++++++++|...+...-.
T Consensus 263 i~~~~~~R~~~---y-~~ad~~I~t~~~s~ee~~~~I~~~l~~~~~ 304 (309)
T PRK08154 263 LRRILASREPL---Y-ARADAVVDTSGLTVAQSLARLRELVRPALG 304 (309)
T ss_pred HHHHHHHHHHH---H-HhCCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 44444433322 3 4589999887 789999999998876643
No 62
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.00 E-value=3.4e-05 Score=79.54 Aligned_cols=147 Identities=17% Similarity=0.285 Sum_probs=81.5
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccc-hhhHHh--ccc-eeeEEee
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE-MMSDIA--ANQ-YLEYGTH 165 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~-f~~~i~--~~~-fle~~~~ 165 (330)
|.+...|+|+|++||||||+.+.|.+... +-|+|.+. +++..- -.+ |-++|+
T Consensus 3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~-----------------------~~fiD~D~~ie~~~g~si~eif~~~Ge- 58 (542)
T PRK14021 3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMR-----------------------LPFADADVEIEREIGMSIPSYFEEYGE- 58 (542)
T ss_pred CCCCccEEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEEchHHHHHHHCcCHHHHHHHHHH-
Confidence 44567899999999999999999998753 23444433 222110 011 222221
Q ss_pred cCccccccHHHHHHHHHhCCeEEEEe------CHHHHHHHHhc-CCCCEEEEEccCcccccc-------------C-chH
Q psy933 166 EDAMYGTKLETIRRIHQEGKIAILDV------EPQALKILRTG-EFSPFVVFIAAPQLQNLS-------------D-YDG 224 (330)
Q Consensus 166 ~g~~YGts~~~i~~v~~~gk~~vldv------~~~~v~~L~~~-~~~p~vIfI~pps~~~l~-------------~-~~e 224 (330)
..+.-.-.+.+++++.. ..+|+.+ +++..+.|+.. .-.-++|||..|- +.+. . ..+
T Consensus 59 -~~FR~~E~~~l~~~~~~-~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~-~~l~~Rl~~~~~RPll~~~~~~ 135 (542)
T PRK14021 59 -PAFREVEADVVADMLED-FDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADP-KEAMERANRGGGRPMLNGDANK 135 (542)
T ss_pred -HHHHHHHHHHHHHHHhc-CCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCH-HHHHHHHhCCCCCCCCCCCcHH
Confidence 01112223344444433 2344433 44555554321 1123778887652 2221 1 123
Q ss_pred HHHHHHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 225 SLEKLAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 225 ~~~rl~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
.++++++++.. .|....|++|.++ +.++++++|.+.+..
T Consensus 136 ~~~~l~~~R~~---~Y~~~Ad~~i~~~~~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 136 RWKKLFKQRDP---VFRQVANVHVHTRGLTPQAAAKKLIDMVAE 176 (542)
T ss_pred HHHHHHHHHHH---HHHhhCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 45566655443 4778899999865 799999999988865
No 63
>PRK14532 adenylate kinase; Provisional
Probab=98.00 E-value=9.1e-05 Score=65.31 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+||+||||||++++|++.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 64
>PRK03839 putative kinase; Provisional
Probab=97.98 E-value=0.00016 Score=63.44 Aligned_cols=23 Identities=26% Similarity=0.590 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|++||||||++++|.+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999875
No 65
>PRK06696 uridine kinase; Validated
Probab=97.98 E-value=1.1e-05 Score=73.60 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..|+|.|+||||||||++.|.+.++
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 446899999999999999999998875
No 66
>PLN02200 adenylate kinase family protein
Probab=97.97 E-value=0.00014 Score=67.22 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=30.2
Q ss_pred cccCceeeecccCC-CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 78 DLVTYEEVVKLPSF-KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 78 ~~~~Ye~V~~~~~~-~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++++.|++-.-+.- .+..|+|+||+||||||++++|++.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 27 EIITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred cccccccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45666665544432 235789999999999999999998763
No 67
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.97 E-value=0.00011 Score=66.20 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++.|+|.|+|||||||++.+|....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999875
No 68
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.94 E-value=3.6e-05 Score=68.56 Aligned_cols=24 Identities=17% Similarity=0.486 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|.|+||+|||||||++.|...++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 69
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.94 E-value=7.8e-06 Score=71.31 Aligned_cols=93 Identities=25% Similarity=0.283 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccc-------cccccCCCCcccCCeeEEEecccchhh--------HHhc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV-------PHTTRSPRSDEENGRAYYFISHDEMMS--------DIAA 156 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v-------~~TTR~pr~~E~~G~dy~fvs~~~f~~--------~i~~ 156 (330)
.+++++|+|+||||||||+|.|....-.. ...| .||||..+.-+.++ .-+.+|..-|.. .--.
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~-t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~~~l~~~~~~~l~ 111 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAKQK-TGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRSFGLWHIDPEELA 111 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS-----S--------------SEEEEEETT-SEEEECSHHHHT--GCCS-HHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcchh-hhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCccccccCCHHHHH
Confidence 34899999999999999999998763211 1222 38888766655522 234444433332 2223
Q ss_pred cceeeEEeecCc-------cccccHHHHHHHHHhCCe
Q psy933 157 NQYLEYGTHEDA-------MYGTKLETIRRIHQEGKI 186 (330)
Q Consensus 157 ~~fle~~~~~g~-------~YGts~~~i~~v~~~gk~ 186 (330)
..|.|...+.+. +-.-+-.+|++++++|.+
T Consensus 112 ~~F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~i 148 (161)
T PF03193_consen 112 QYFPEFRPLAGQCKFRDCTHIHEPGCAVKAAVENGEI 148 (161)
T ss_dssp HCSGGGHHHTTHSSSTTTTSSSSTT-HHHHHHHTTSS
T ss_pred HHHHHhccccCCCCccCCCCCCCCCChHHHHHHCCCC
Confidence 346665554432 345778899999999975
No 70
>PRK14531 adenylate kinase; Provisional
Probab=97.90 E-value=0.00013 Score=64.46 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
|++.|+|+||+||||||++++|.+.+
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34579999999999999999999876
No 71
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.90 E-value=0.00035 Score=59.04 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=40.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMM 151 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~ 151 (330)
..|+|+|++|+|||||+++|..... ......+.||+..... +.+|.+|.+++...+.
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEER-VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIR 61 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccc-eeccCCCCCccCceeeEEEECCeeEEEEECCCCc
Confidence 4689999999999999999987532 2334566777766443 3467777777766554
No 72
>PRK00625 shikimate kinase; Provisional
Probab=97.89 E-value=9.2e-05 Score=65.30 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|++||||||+++.|.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 73
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.89 E-value=0.00024 Score=67.62 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=20.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHH
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLI 114 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~ 114 (330)
.+.|+|+|++||||||+++.|.
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 4689999999999999999885
No 74
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.88 E-value=6.8e-05 Score=66.29 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++.|+|.|+.||||||++++|.+.+.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998765
No 75
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.85 E-value=6.7e-05 Score=66.32 Aligned_cols=150 Identities=18% Similarity=0.259 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh-----ccceeeEE----
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA-----ANQYLEYG---- 163 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~-----~~~fle~~---- 163 (330)
+++|+|-|||.||||||++.|.+.++. .|..++.+.|..++. .+.-++++
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~---------------------p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~ 59 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPE---------------------PWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRP 59 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS----------------------EEEEEHHHHHHHS-GGGGTSTTSEEEETTSE
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcC---------------------CeEEEecChHHhhcCcccccCCccccccccCC
Confidence 368999999999999999999998874 245556666666433 22334433
Q ss_pred ---eecCccccccHHHHHHHHHhCCeEEEEe---CHHH-HHHHHh--cCCCCEEEEEccCccccccCchHHH-HHH-HHH
Q psy933 164 ---THEDAMYGTKLETIRRIHQEGKIAILDV---EPQA-LKILRT--GEFSPFVVFIAAPQLQNLSDYDGSL-EKL-AKE 232 (330)
Q Consensus 164 ---~~~g~~YGts~~~i~~v~~~gk~~vldv---~~~~-v~~L~~--~~~~p~vIfI~pps~~~l~~~~e~~-~rl-~~~ 232 (330)
......|..-..+|....+.|..+|+|- ++.. ...++. .+....+|=|.+| .+++...+..- .|. -.+
T Consensus 60 ~~~~~~~~~~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cp-leil~~RE~~RgDR~~G~a 138 (174)
T PF07931_consen 60 DGGPLFRRLYAAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCP-LEILERRERARGDRPIGLA 138 (174)
T ss_dssp EE-HHHHHHHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE---HHHHHHHHHHHTSSSTTHH
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECC-HHHHHHHHHhcCCcchHHH
Confidence 1222346666778888889999999882 3332 344533 2455566777776 44443111000 010 001
Q ss_pred HHHHHhh-ccccceEEEecC--CHHHHHHHHHHHH
Q psy933 233 SDILKSA-YEHFFDLTVVNN--DIEETIGILEKAI 264 (330)
Q Consensus 233 ~~~ie~~-~~~~fD~vI~N~--dle~a~~~L~~~i 264 (330)
....+.- -...||+.|... +.+++.++|.+.+
T Consensus 139 ~~q~~~Vh~~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 139 AWQAEHVHEGGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp HHHTTGGGTT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred HHHHhhcccCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 1111111 235699999876 7888888887654
No 76
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.85 E-value=7.5e-05 Score=77.40 Aligned_cols=150 Identities=20% Similarity=0.265 Sum_probs=82.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEee-cCccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH-EDAMY 170 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~-~g~~Y 170 (330)
.+..|+|+|++|+|||||++.|.+..-. ..|.+..|++.+.+...+..+. .|... ....|
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~-----------------~~g~~~~~lD~D~vr~~l~ge~--~f~~~er~~~~ 451 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLME-----------------MRGRPVTLLDGDVVRKHLSSEL--GFSKEDRDLNI 451 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhh-----------------ccCceEEEeCCcHHHHhccCCC--CCCHHHHHHHH
Confidence 3458999999999999999999886531 1233445666665544332211 11100 00112
Q ss_pred cccHHHHHHHHHhCCeEEEEeC-H------HHHHHHHhcCCCCEEEEEccCccccccCch----------HHHHHHHHHH
Q psy933 171 GTKLETIRRIHQEGKIAILDVE-P------QALKILRTGEFSPFVVFIAAPQLQNLSDYD----------GSLEKLAKES 233 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~-~------~~v~~L~~~~~~p~vIfI~pps~~~l~~~~----------e~~~rl~~~~ 233 (330)
..-......+++.|..+|++.. + .....++..+ ..++||+..| .+.+.+.. +.++.+....
T Consensus 452 ~~l~~~a~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p-~e~l~~R~rr~Ll~~~~~~~i~~l~~~R 529 (568)
T PRK05537 452 LRIGFVASEITKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATP-LEVCEQRDRKGLYAKAREGKIKGFTGIS 529 (568)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCC-HHHHHHhccccccccchhchhhcccccc
Confidence 2111123457788999988842 1 2233343332 2368999976 33332110 1112221111
Q ss_pred HHHHhhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 234 DILKSAYE--HFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 234 ~~ie~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
..|. ...|++|.++ ++++++++|...+..
T Consensus 530 ----~~yy~p~~Adl~IDt~~~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 530 ----DPYEPPANPELVIDTTNVTPDECAHKILLYLEE 562 (568)
T ss_pred ----ccccCCCCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 1222 4578888876 789999999888764
No 77
>PLN02924 thymidylate kinase
Probab=97.84 E-value=0.00019 Score=65.69 Aligned_cols=162 Identities=14% Similarity=0.116 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc----eeeEEeec
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ----YLEYGTHE 166 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~----fle~~~~~ 166 (330)
.+++.|+|-|+.||||||+++.|.+.+... +..+ .+||.|..+...|. ...+.+..+. ..+.--|.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~-g~~v-~~~~ep~~~~~~g~--------~ir~~l~~~~~~~~~~~~llf~ 83 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGL-GVAA-ELWRFPDRTTSVGQ--------MISAYLSNKSQLDDRAIHLLFS 83 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCc-eeeeCCCCCChHHH--------HHHHHHhCCCCCCHHHHHHHHH
Confidence 356799999999999999999999887642 2333 45666653221111 1111111110 00000001
Q ss_pred CccccccHHHHHHHHHhCCeEEEEeCHHH--------------HHHHHhcCCCC-EEEEEccCcccccc---C------c
Q psy933 167 DAMYGTKLETIRRIHQEGKIAILDVEPQA--------------LKILRTGEFSP-FVVFIAAPQLQNLS---D------Y 222 (330)
Q Consensus 167 g~~YGts~~~i~~v~~~gk~~vldv~~~~--------------v~~L~~~~~~p-~vIfI~pps~~~l~---~------~ 222 (330)
.+.+- ....|...+++|+++|+|=-..+ +..+....+.| ++||+..|.-..++ . .
T Consensus 84 adR~~-~~~~I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~~~~~~~~E~ 162 (220)
T PLN02924 84 ANRWE-KRSLMERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERGGYGGERYEK 162 (220)
T ss_pred HHHHH-HHHHHHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCcccccc
Confidence 11111 13457777888999888754431 22233333456 67888865322111 0 0
Q ss_pred hHHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 223 DGSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 223 ~e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
.+-++++.+....+.. .. -.+|.++ ++++..++|.++|...
T Consensus 163 ~~~~~rv~~~Y~~la~---~~-~~vIDa~~sieeV~~~I~~~I~~~ 204 (220)
T PLN02924 163 LEFQKKVAKRFQTLRD---SS-WKIIDASQSIEEVEKKIREVVLDT 204 (220)
T ss_pred HHHHHHHHHHHHHHhh---cC-EEEECCCCCHHHHHHHHHHHHHHH
Confidence 1112333333333321 11 1344444 8999999998888653
No 78
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.80 E-value=2.3e-05 Score=80.97 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=60.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHHh---ccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDIA---ANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i~---~~~fle~~~~~ 166 (330)
++..++|+||||+|||||++.|.+.++ |..|++ ||.|..-++.+...+.+. ++.++..++..
T Consensus 354 ~Ge~vaiVG~sGsGKSTl~~LL~r~~~-------------~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~ 420 (567)
T COG1132 354 PGEKVAIVGPSGSGKSTLIKLLLRLYD-------------PTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420 (567)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC-------------CCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHH
Confidence 457899999999999999999887765 334443 899988888888777655 88889889988
Q ss_pred Cc-ccccc---HHHHHHHHHh
Q psy933 167 DA-MYGTK---LETIRRIHQE 183 (330)
Q Consensus 167 g~-~YGts---~~~i~~v~~~ 183 (330)
.| .||.+ .+.|.++++.
T Consensus 421 ~NI~~g~~~at~eei~~a~k~ 441 (567)
T COG1132 421 ENIALGRPDATDEEIEEALKL 441 (567)
T ss_pred HHHhcCCCCCCHHHHHHHHHH
Confidence 88 68854 4556655543
No 79
>PRK13975 thymidylate kinase; Provisional
Probab=97.79 E-value=0.00027 Score=62.48 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
|++.|+|.|+.||||||+++.|.+.+.
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999998875
No 80
>PLN02199 shikimate kinase
Probab=97.78 E-value=0.00024 Score=67.75 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+++.|+|+|++|+||||+.+.|.+..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~L 126 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVL 126 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999998764
No 81
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.77 E-value=0.00051 Score=68.11 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=40.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC---CeeEEEecccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN---GRAYYFISHDE 149 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~---G~dy~fvs~~~ 149 (330)
-|+|+|.++||||||++.|....| .....|.|||.|-.|-+. +..+.|++..-
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPG 216 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPG 216 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCC
Confidence 489999999999999999997765 356678999999877442 23355555443
No 82
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.77 E-value=1.2e-05 Score=72.79 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.4
Q ss_pred ccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933 242 HFFDLTVVNN-DIEETIGILEKAIEELH 268 (330)
Q Consensus 242 ~~fD~vI~N~-dle~a~~~L~~~i~~~~ 268 (330)
..+|++|.|+ ++++..+++..+++.+.
T Consensus 177 ~~ad~vI~N~g~~e~l~~~i~~~~~~~~ 204 (208)
T PRK14731 177 ERADYVIYNNGTLDELKAQTEQLYQVLL 204 (208)
T ss_pred HhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 4689999998 99999999999987763
No 83
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.76 E-value=0.00014 Score=61.65 Aligned_cols=23 Identities=22% Similarity=0.628 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+|+|+||+||||||+++.|.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998763
No 84
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00044 Score=64.06 Aligned_cols=151 Identities=21% Similarity=0.239 Sum_probs=78.9
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCc-
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDA- 168 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~- 168 (330)
...+-.|.|+||||||||||.+.++-... -..+.|....++. .+-..++-|.| ++...+-|-+..+|
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G~V~~~g~~v-~~p~~~~~~vF----------Q~~~LlPW~Tv~~NV 93 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSGEVLLDGRPV-TGPGPDIGYVF----------QEDALLPWLTVLDNV 93 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCceEEECCccc-CCCCCCEEEEe----------ccCcccchhhHHhhh
Confidence 34678999999999999999998876543 2444454444443 22223344555 34445556555555
Q ss_pred cccccH---------HHHHHHHHh-CCeEEEEeCH---HH-H----HHHHhcCCCCEEEEEccCccccccCchHHH-HHH
Q psy933 169 MYGTKL---------ETIRRIHQE-GKIAILDVEP---QA-L----KILRTGEFSPFVVFIAAPQLQNLSDYDGSL-EKL 229 (330)
Q Consensus 169 ~YGts~---------~~i~~v~~~-gk~~vldv~~---~~-v----~~L~~~~~~p~vIfI~pps~~~l~~~~e~~-~rl 229 (330)
..|... +.+.+.++. |-.-.-+--| .| . --.|..-..|-++.+.-|- ..| |... ..|
T Consensus 94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF-gAL---DalTR~~l 169 (248)
T COG1116 94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF-GAL---DALTREEL 169 (248)
T ss_pred eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc-chh---hHHHHHHH
Confidence 233322 123333332 1111111111 11 1 1123334578888887662 111 2111 234
Q ss_pred HHHHHHHHhhccccceEEEecCCHHHHHH
Q psy933 230 AKESDILKSAYEHFFDLTVVNNDIEETIG 258 (330)
Q Consensus 230 ~~~~~~ie~~~~~~fD~vI~N~dle~a~~ 258 (330)
.+....+-++ +-+..+++..|+++|+-
T Consensus 170 q~~l~~lw~~--~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 170 QDELLRLWEE--TRKTVLLVTHDVDEAVY 196 (248)
T ss_pred HHHHHHHHHh--hCCEEEEEeCCHHHHHh
Confidence 4444444322 44899999999999873
No 85
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.74 E-value=2.4e-05 Score=79.98 Aligned_cols=77 Identities=21% Similarity=0.258 Sum_probs=55.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
++..++|+||||+|||||++.|...++ |..|+ +||.|..-+ .+++.+. +.++.|+..++..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~ 425 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD-------------PLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVR 425 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHH
Confidence 568999999999999999999987664 44554 478776655 5555543 4588888888888
Q ss_pred Cc-cccc---cHHHHHHHHH
Q psy933 167 DA-MYGT---KLETIRRIHQ 182 (330)
Q Consensus 167 g~-~YGt---s~~~i~~v~~ 182 (330)
+| .||. +.+.+.++++
T Consensus 426 eNI~~g~~~~~~e~i~~al~ 445 (529)
T TIGR02868 426 DNLRLGRPDATDEELWAALE 445 (529)
T ss_pred HHHhccCCCCCHHHHHHHHH
Confidence 88 5764 3455555554
No 86
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.74 E-value=0.00031 Score=61.37 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+||+||||||++++|++.+.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998764
No 87
>PRK13976 thymidylate kinase; Provisional
Probab=97.71 E-value=0.00028 Score=64.07 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=30.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr 133 (330)
.|+|-|.-||||||+++.|.+.+....+..-.++||.|.
T Consensus 2 fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~ 40 (209)
T PRK13976 2 FITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPG 40 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC
Confidence 689999999999999999998876432222346778775
No 88
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.69 E-value=0.0005 Score=64.45 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=30.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr 133 (330)
.|+|+|++|||||||.++|..... ......|.|||.+-
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i 39 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKI-SITSPKAQTTRNRI 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcE-eecCCCCCcccCcE
Confidence 488999999999999999997642 23466788999753
No 89
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.68 E-value=0.00016 Score=64.90 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
+.|+|+|+.||||||+++.|.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~ 24 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQ 24 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999999876
No 90
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.68 E-value=0.00013 Score=76.56 Aligned_cols=152 Identities=18% Similarity=0.241 Sum_probs=85.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE-eecCccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG-THEDAMY 170 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~-~~~g~~Y 170 (330)
+++.|++.|.+|+||||+++.|.+.... .|..+.+++.+.+...+..+. .|. +-....|
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~------------------~~~~~~~l~~D~~r~~l~~~~--~~~~~~r~~~~ 518 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHA------------------LGRHTYLLDGDNVRHGLNRDL--GFSDADRVENI 518 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHH------------------cCCCEEEEcChhhhhccCCCC--CCCHHHHHHHH
Confidence 4679999999999999999999876421 234567777777776554321 010 0000112
Q ss_pred cccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcC--CCCEEEEEccCccccccCchHHHHHHHHHH--H------HHH
Q psy933 171 GTKLETIRRIHQEGKIAILDVE---PQALKILRTGE--FSPFVVFIAAPQLQNLSDYDGSLEKLAKES--D------ILK 237 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~--~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--~------~ie 237 (330)
..-.......+++|..++++.. ..-...++... ...++||+.+| .+.+.+.+. +.++... . ...
T Consensus 519 ~~l~~~a~~~~~~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~-~e~~~~R~~--r~L~~~~~~~~l~~l~~~r 595 (632)
T PRK05506 519 RRVAEVARLMADAGLIVLVSFISPFREERELARALHGEGEFVEVFVDTP-LEVCEARDP--KGLYAKARAGEIKNFTGID 595 (632)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCC-HHHHHhhCC--cchhhhccccccccccccc
Confidence 2222223334577988888764 22233333321 23478898886 344432210 1122111 0 111
Q ss_pred hhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 238 SAYE--HFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 238 ~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
..|. ...|++|.++ +++++++++.+.+..
T Consensus 596 ~~y~~P~~a~~~Id~~~~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 596 SPYEAPENPELRLDTTGRSPEELAEQVLELLRR 628 (632)
T ss_pred cCCCCCCCCeEEEeCCCCCHHHHHHHHHHHHHH
Confidence 2344 4578888874 799999999888764
No 91
>PRK14527 adenylate kinase; Provisional
Probab=97.67 E-value=0.0002 Score=63.51 Aligned_cols=27 Identities=26% Similarity=0.519 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++..|+|+||+|+||||+++.|.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988763
No 92
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.66 E-value=5.1e-05 Score=86.44 Aligned_cols=91 Identities=15% Similarity=0.186 Sum_probs=66.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCC-----------------------------------------cccccccccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDK-----------------------------------------YAYPVPHTTR 130 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~-----------------------------------------f~~~v~~TTR 130 (330)
.+..++|+||||||||||++.|...++-. -...-+.+|+
T Consensus 1193 ~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1272 (1466)
T PTZ00265 1193 SKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTV 1272 (1466)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 56899999999999999999998876521 0112335677
Q ss_pred CCCCccc--CCeeEEEecccchhhHH---hccceeeEEeecCc-cccc---cHHHHHHHHH
Q psy933 131 SPRSDEE--NGRAYYFISHDEMMSDI---AANQYLEYGTHEDA-MYGT---KLETIRRIHQ 182 (330)
Q Consensus 131 ~pr~~E~--~G~dy~fvs~~~f~~~i---~~~~fle~~~~~g~-~YGt---s~~~i~~v~~ 182 (330)
.|..|++ ||+|..-++...+.+.+ .+..||..++...| .||. +.+.|.++++
T Consensus 1273 ~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k 1333 (1466)
T PTZ00265 1273 FKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACK 1333 (1466)
T ss_pred CCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHH
Confidence 7888876 99998888877776644 58889999988888 5883 4445555443
No 93
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.65 E-value=2.6e-05 Score=74.12 Aligned_cols=90 Identities=21% Similarity=0.296 Sum_probs=57.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc-------ccccCCCCcccC-C-----------eeEEEecccchhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP-------HTTRSPRSDEEN-G-----------RAYYFISHDEMMS 152 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~-------~TTR~pr~~E~~-G-----------~dy~fvs~~~f~~ 152 (330)
.+++.||+|+||||||||.|+|..... .-...|+ ||||..+.-..+ | .+++.++.+++
T Consensus 163 ~~~~svl~GqSGVGKSSLiN~L~p~~~-~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l-- 239 (301)
T COG1162 163 AGKITVLLGQSGVGKSTLINALLPELN-QKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDL-- 239 (301)
T ss_pred cCCeEEEECCCCCcHHHHHHhhCchhh-hhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHH--
Confidence 568999999999999999999986543 2344444 899976655542 1 12333444433
Q ss_pred HHhccceeeEEeecCc-------cccccHHHHHHHHHhCCeE
Q psy933 153 DIAANQYLEYGTHEDA-------MYGTKLETIRRIHQEGKIA 187 (330)
Q Consensus 153 ~i~~~~fle~~~~~g~-------~YGts~~~i~~v~~~gk~~ 187 (330)
...|.|+.++.+. +-+-+-++|+++++.|.+.
T Consensus 240 ---~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~i~ 278 (301)
T COG1162 240 ---VQAFPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGEIA 278 (301)
T ss_pred ---HHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCCCC
Confidence 3334444444332 2356778888888888653
No 94
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.65 E-value=0.001 Score=61.30 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=39.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEeccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHD 148 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~ 148 (330)
.|+|+|++|||||||.++|....+ .....++||..|.+|. .+|..+.+++..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~~~~~i~l~Dtp 55 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEYKGAKIQLLDLP 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEECCeEEEEEECC
Confidence 478999999999999999987654 3445678888877764 466666666543
No 95
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.64 E-value=4.6e-05 Score=78.94 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHH---hccceeeEEeecCc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDI---AANQYLEYGTHEDA 168 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~g~ 168 (330)
++..++|+||||+|||||++.|...+|. .+.| -.+|.+..-++.+.+.+.+ .++.|+..++..+|
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~p~--~G~I----------~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eN 442 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFLPY--QGSL----------KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDN 442 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC--CcEE----------EECCEecccCCHHHHHhheEEecCCCcCCCcCHHHH
Confidence 5689999999999999999999877642 2222 2488888777777766644 58889988988888
Q ss_pred -cccc---cHHHHHHHHH
Q psy933 169 -MYGT---KLETIRRIHQ 182 (330)
Q Consensus 169 -~YGt---s~~~i~~v~~ 182 (330)
.||. +.+.+.++++
T Consensus 443 I~~g~~~~~~eei~~al~ 460 (588)
T PRK11174 443 VLLGNPDASDEQLQQALE 460 (588)
T ss_pred hhcCCCCCCHHHHHHHHH
Confidence 5773 3455555543
No 96
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.63 E-value=0.00011 Score=66.03 Aligned_cols=62 Identities=11% Similarity=0.014 Sum_probs=38.8
Q ss_pred CCEEEEEccCcccccc---C----chHHH-HHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933 205 SPFVVFIAAPQLQNLS---D----YDGSL-EKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEELH 268 (330)
Q Consensus 205 ~p~vIfI~pps~~~l~---~----~~e~~-~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~ 268 (330)
.-.+|||.+|.-..++ . +.+++ .|+..+. .........|++|.|+ ++++...++..+++++.
T Consensus 122 ~D~vi~V~a~~e~r~~RL~~R~g~s~e~a~~ri~~Q~--~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~~~~~ 192 (196)
T PRK14732 122 CDATVTVDSDPEESILRTISRDGMKKEDVLARIASQL--PITEKLKRADYIVRNDGNREGLKEECKILYSTLL 192 (196)
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcC--CHHHHHHhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 4678888877543332 1 22222 2332221 1123456799999998 99999999999887764
No 97
>PRK07261 topology modulation protein; Provisional
Probab=97.63 E-value=0.00018 Score=62.99 Aligned_cols=23 Identities=17% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|+||+|||||++.|.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 98
>KOG0058|consensus
Probab=97.62 E-value=3e-05 Score=80.73 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=56.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
++..++|+||||+||||+++.|.+.|. |..|. .||+|..-++..-..+. +.+..-|.-+...
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~-------------PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYD-------------PTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 457999999999999999998876653 55564 48887666666555543 3466677777888
Q ss_pred Cc-cccccHHHHHHHHH
Q psy933 167 DA-MYGTKLETIRRIHQ 182 (330)
Q Consensus 167 g~-~YGts~~~i~~v~~ 182 (330)
+| .||....+-+++.+
T Consensus 560 eNI~YG~~~~t~e~i~~ 576 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEA 576 (716)
T ss_pred HHHhcCCCCCCHHHHHH
Confidence 78 79977655555543
No 99
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.60 E-value=7.4e-05 Score=65.72 Aligned_cols=51 Identities=12% Similarity=0.285 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHHh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDIA 155 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i~ 155 (330)
.+-.++|+||||||||||.+.++...+ |..|++ .|.+|.-.+.+.|.+.+.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lis-------------p~~G~l~f~Ge~vs~~~pea~Rq~Vs 80 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLIS-------------PTSGTLLFEGEDVSTLKPEAYRQQVS 80 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccC-------------CCCceEEEcCccccccChHHHHHHHH
Confidence 456899999999999999999987765 556665 788888889999887654
No 100
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.59 E-value=0.00035 Score=62.51 Aligned_cols=103 Identities=15% Similarity=0.212 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc-ce-----eeEEee
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN-QY-----LEYGTH 165 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~-~f-----le~~~~ 165 (330)
.+..++|.|++|||||++++.+...+. +.++..++.++|...+..- .+ .+....
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--------------------~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~ 73 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG--------------------GGGIVVIDADEFRQFHPDYDELLKADPDEASEL 73 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT---------------------TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc--------------------CCCeEEEehHHHHHhccchhhhhhhhhhhhHHH
Confidence 456788889999999999999988751 1134456666665443110 00 000000
Q ss_pred cCc-cccccHHHHHHHHHhCCeEEEEeCH---HH----HHHHHhcCCCCEEEEEccC
Q psy933 166 EDA-MYGTKLETIRRIHQEGKIAILDVEP---QA----LKILRTGEFSPFVVFIAAP 214 (330)
Q Consensus 166 ~g~-~YGts~~~i~~v~~~gk~~vldv~~---~~----v~~L~~~~~~p~vIfI~pp 214 (330)
... ..-.....++.+++++..++++-.. +. ++.++..+++..++||..|
T Consensus 74 ~~~~a~~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~ 130 (199)
T PF06414_consen 74 TQKEASRLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVP 130 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECC
Confidence 000 0112334567778889999998643 22 3466677888888888865
No 101
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.59 E-value=0.00095 Score=63.83 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
-.|+|.|||||||||++.+|+..+.
T Consensus 93 ~iIlI~G~sgsGKStlA~~La~~l~ 117 (301)
T PRK04220 93 IIILIGGASGVGTSTIAFELASRLG 117 (301)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688899999999999999998874
No 102
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.57 E-value=7.4e-05 Score=60.52 Aligned_cols=53 Identities=25% Similarity=0.411 Sum_probs=38.4
Q ss_pred EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE 149 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~ 149 (330)
|+|+|++|+|||||.+.|..... .-....+.||+.+..+ +.++..+.|+|..-
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG 56 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKL-AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPG 56 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTS-SEESSSTTSSSSEEEEEEEETTEEEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHhcccc-ccccccccceeeeeeeeeeeceeeEEEEeCCC
Confidence 78999999999999999997432 2345567888887443 35666666766554
No 103
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.57 E-value=0.00038 Score=63.09 Aligned_cols=29 Identities=24% Similarity=0.244 Sum_probs=24.0
Q ss_pred ccccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933 240 YEHFFDLTVVNN--DIEETIGILEKAIEELH 268 (330)
Q Consensus 240 ~~~~fD~vI~N~--dle~a~~~L~~~i~~~~ 268 (330)
.....|+||.|+ +++++-.++..+++.+.
T Consensus 170 k~~~aD~VI~N~g~~~~~l~~~~~~~~~~~~ 200 (204)
T PRK14733 170 REKIADFVIDNTELTDQELESKLITTINEIT 200 (204)
T ss_pred HHHhCCEEEECcCCCHHHHHHHHHHHHHHHH
Confidence 346789999997 68999999999988764
No 104
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.55 E-value=7.1e-05 Score=79.07 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=57.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
++..++|+||||+|||||++.|...++ |..|+ .||++..-++.+.+.+.+ .++.++..++..
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 544 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFET-------------PESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF 544 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHH
Confidence 568999999999999999999987764 45554 488888878877776644 477788777777
Q ss_pred Ccc-cc--ccHHHHHHHHH
Q psy933 167 DAM-YG--TKLETIRRIHQ 182 (330)
Q Consensus 167 g~~-YG--ts~~~i~~v~~ 182 (330)
+|. +| .+.+.+.++++
T Consensus 545 eNi~~~~~~~~e~i~~al~ 563 (686)
T TIGR03797 545 ENIAGGAPLTLDEAWEAAR 563 (686)
T ss_pred HHHhcCCCCCHHHHHHHHH
Confidence 773 55 34444444443
No 105
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.54 E-value=0.00024 Score=67.08 Aligned_cols=151 Identities=18% Similarity=0.232 Sum_probs=76.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTK 173 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts 173 (330)
+.|+|+|.+||||||+++.|.+.+.+ .|.+.+.++.+.+. +..+.|.. .......-|.-
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~------------------~~~~v~~i~~~~~~--~~~~~y~~-~~~Ek~~R~~l 60 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE------------------KGKEVVIISDDSLG--IDRNDYAD-SKKEKEARGSL 60 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH------------------TT--EEEE-THHHH---TTSSS---GGGHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh------------------cCCEEEEEcccccc--cchhhhhc-hhhhHHHHHHH
Confidence 47999999999999999999987653 34556677766554 33433321 11122344666
Q ss_pred HHHHHHHHHhCCeEEEEeCH--HHHH----HH-HhcCCCCEEEEEccCcccccc-----C-----chHHHHHHHHHHHHH
Q psy933 174 LETIRRIHQEGKIAILDVEP--QALK----IL-RTGEFSPFVVFIAAPQLQNLS-----D-----YDGSLEKLAKESDIL 236 (330)
Q Consensus 174 ~~~i~~v~~~gk~~vldv~~--~~v~----~L-~~~~~~p~vIfI~pps~~~l~-----~-----~~e~~~rl~~~~~~i 236 (330)
+.+|+..+.++.++|+|=.- .|.+ .+ |..+..-.+||+..|--..+. . .++.+.+|....+.-
T Consensus 61 ~s~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P 140 (270)
T PF08433_consen 61 KSAVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEP 140 (270)
T ss_dssp HHHHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---T
T ss_pred HHHHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCC
Confidence 77888888888777776442 4432 12 223444557999987332222 1 245567777766554
Q ss_pred Hhh-ccccceEEEecCCHHHHHHHHHHHHH
Q psy933 237 KSA-YEHFFDLTVVNNDIEETIGILEKAIE 265 (330)
Q Consensus 237 e~~-~~~~fD~vI~N~dle~a~~~L~~~i~ 265 (330)
... -+....++|.+++-+..+++|..+|.
T Consensus 141 ~~~nrWD~plf~i~~~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 141 DPKNRWDSPLFTIDSSDEELPLEEIWNALF 170 (270)
T ss_dssp TSS-GGGS-SEEEE-TTS---HHHHHHHHH
T ss_pred CCCCCccCCeEEEecCCCCCCHHHHHHHHH
Confidence 322 13445566664544455566666553
No 106
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.54 E-value=0.0027 Score=63.20 Aligned_cols=156 Identities=12% Similarity=0.161 Sum_probs=79.0
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh-ccceeeEEeecCc
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA-ANQYLEYGTHEDA 168 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~-~~~fle~~~~~g~ 168 (330)
++..+.|+|+|++|+|||||++.|++.+.-. +++- +.++-..+... .+.-+.+..+...
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~---~v~E-----------------~~R~~~~~~~~~~~~~l~~~D~~~i 275 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT---SAWE-----------------YGREYVFSHLGGDEMALQYSDYDKI 275 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC---eeee-----------------ccHHHHHHhhcCCccCCChhhhHHH
Confidence 3445789999999999999999999875311 1111 11111111110 1112222223333
Q ss_pred cccccHHHHHHHHHhCCeEEEEeCHHHHHH-HHhc--------------CCCCEEEEEccCcc----ccccCc-hHHHH-
Q psy933 169 MYGTKLETIRRIHQEGKIAILDVEPQALKI-LRTG--------------EFSPFVVFIAAPQL----QNLSDY-DGSLE- 227 (330)
Q Consensus 169 ~YGts~~~i~~v~~~gk~~vldv~~~~v~~-L~~~--------------~~~p~vIfI~pps~----~~l~~~-~e~~~- 227 (330)
.+|.....-..+....+.+++|.+.-.... ++.. .-+.. +|+.+|+. +-++.. +++.+
T Consensus 276 a~~~~~~~~~~~~~a~~~~f~Dt~~~~t~~y~~~y~g~~~p~l~~~~~~~ryDl-vlll~pd~Pwv~DGlR~~~D~e~R~ 354 (399)
T PRK08099 276 ALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALIDEYRFDL-TILLENNTPWVADGLRSLGSSVDRK 354 (399)
T ss_pred HhhhHHHHHHHHHhcCCeEEEeCChHHHHHHHHHhCCCCCHHHHHHHHhCCCCE-EEEcCCCCCcccCCcccCCCHHHHH
Confidence 455555444445556788888887543222 2211 11223 44443332 223322 22222
Q ss_pred HHHHHHHHHHhhccccceEEEec-CCHHHHHHHHHHHHHHhc
Q psy933 228 KLAKESDILKSAYEHFFDLTVVN-NDIEETIGILEKAIEELH 268 (330)
Q Consensus 228 rl~~~~~~ie~~~~~~fD~vI~N-~dle~a~~~L~~~i~~~~ 268 (330)
.+......+-.. .-+.+++++ .+.++=+.+-.++|+.+-
T Consensus 355 ~f~~~l~~~l~~--~g~~~v~l~~g~~~eR~~~a~~~i~~~l 394 (399)
T PRK08099 355 RFQNLLKEMLKE--NNIEYVHVESPDYDKRYLRCVELVDQML 394 (399)
T ss_pred HHHHHHHHHHHH--cCCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence 233222222122 346688885 689888888888887764
No 107
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00014 Score=70.86 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..+.|+||||||||||.+.|+-.
T Consensus 30 ~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 30 KGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999988743
No 108
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.53 E-value=9.9e-05 Score=76.34 Aligned_cols=78 Identities=22% Similarity=0.277 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
++..++|+||||+|||||++.|...++ |..|+ .+|.++.-++.+.+.+. +.++.|+..++..
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~-------------p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYD-------------IDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence 567899999999999999999988765 34454 38887776666666553 3577888888887
Q ss_pred Cc-cccc----cHHHHHHHHH
Q psy933 167 DA-MYGT----KLETIRRIHQ 182 (330)
Q Consensus 167 g~-~YGt----s~~~i~~v~~ 182 (330)
.| .||. +.+.+.++++
T Consensus 435 ~Ni~~~~~~~~~~~~i~~al~ 455 (582)
T PRK11176 435 NNIAYARTEQYSREQIEEAAR 455 (582)
T ss_pred HHHhcCCCCCCCHHHHHHHHH
Confidence 77 4653 3445555544
No 109
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.50 E-value=0.00085 Score=60.70 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+||+||||||+++.|.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 110
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.50 E-value=0.00036 Score=64.88 Aligned_cols=86 Identities=12% Similarity=0.215 Sum_probs=50.2
Q ss_pred CeEEEEeCHHHHHH-HHhcCCCCEEEEEccCcccccc---C----chHHH-HHHHHHHHHHHhhccccceEEEecC---C
Q psy933 185 KIAILDVEPQALKI-LRTGEFSPFVVFIAAPQLQNLS---D----YDGSL-EKLAKESDILKSAYEHFFDLTVVNN---D 252 (330)
Q Consensus 185 k~~vldv~~~~v~~-L~~~~~~p~vIfI~pps~~~l~---~----~~e~~-~rl~~~~~~ie~~~~~~fD~vI~N~---d 252 (330)
..||+|+-.- .+. + ...+.-.+|+|.+|....++ . +.+++ +|+..+.. .......+|+||.|+ |
T Consensus 118 ~~vv~evPLL-~E~~~-~~~~~D~iv~V~a~~e~ri~RL~~R~g~s~eea~~Ri~~Q~~--~~ek~~~aD~VI~N~~~g~ 193 (244)
T PTZ00451 118 LIVVLDAPTL-FETKT-FTYFVSASVVVSCSEERQIERLRKRNGFSKEEALQRIGSQMP--LEEKRRLADYIIENDSADD 193 (244)
T ss_pred CEEEEEechh-hccCc-hhhcCCeEEEEECCHHHHHHHHHHcCCCCHHHHHHHHHhCCC--HHHHHHhCCEEEECCCCCC
Confidence 3778777542 111 1 11234678888877433222 1 22333 33332211 123457799999998 8
Q ss_pred HHHHHHHHHHHHHHhc-CCCccc
Q psy933 253 IEETIGILEKAIEELH-TTPQWI 274 (330)
Q Consensus 253 le~a~~~L~~~i~~~~-~~~~Wv 274 (330)
+++...++..++..+. ..|.|+
T Consensus 194 ~~~L~~~v~~~~~~~~~~~~~~~ 216 (244)
T PTZ00451 194 LDELRGSVCDCVAWMSRQSNKRL 216 (244)
T ss_pred HHHHHHHHHHHHHHHHhhCChHH
Confidence 9999999999998764 345554
No 111
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.49 E-value=0.0017 Score=64.84 Aligned_cols=91 Identities=16% Similarity=0.267 Sum_probs=69.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY 170 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y 170 (330)
+--|+|+|-+.||||||.|+|+.+.. .....++-|||.+=.. |.+|..|.+++..-+.+...-.+=+|+.
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR-~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~------- 249 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEER-VIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKY------- 249 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCce-EEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEE-------
Confidence 45799999999999999999998865 5888899999998665 4579999999999888765544445552
Q ss_pred cccHHHHHHHHHhCCeEEEEeCH
Q psy933 171 GTKLETIRRIHQEGKIAILDVEP 193 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~~ 193 (330)
.. ..+ ..+++...+|+|.+|.
T Consensus 250 Sv-~rt-~~aI~~a~vvllviDa 270 (444)
T COG1160 250 SV-ART-LKAIERADVVLLVIDA 270 (444)
T ss_pred ee-hhh-HhHHhhcCEEEEEEEC
Confidence 22 222 4456677888888764
No 112
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.0017 Score=57.46 Aligned_cols=24 Identities=25% Similarity=0.603 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+|||||||||++++|.+.++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998754
No 113
>PRK06761 hypothetical protein; Provisional
Probab=97.49 E-value=0.00019 Score=68.04 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCcccccccccc--CCCCcccCCeeEEEecccchhhHHhccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTR--SPRSDEENGRAYYFISHDEMMSDIAANQ 158 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR--~pr~~E~~G~dy~fvs~~~f~~~i~~~~ 158 (330)
.+.|+|.||+|+|||||++.|.+..... +..+..++. .+++.+..|..+ ++.++|...+....
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~-g~~v~~~~~~~~~~p~d~~~~~~--~~~eer~~~l~~~~ 67 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQN-GIEVELYLEGNLDHPADYDGVAC--FTKEEFDRLLSNYP 67 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcC-ceEEEEEecCCCCCchhhccccC--CCHHHHHHHHHhhh
Confidence 4689999999999999999999887643 223333322 346667766544 47788887776554
No 114
>COG4639 Predicted kinase [General function prediction only]
Probab=97.49 E-value=0.0012 Score=57.14 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCc---c
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDA---M 169 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~---~ 169 (330)
+..|+|+|+|||||||+++.....++ .+|.+.|...+-.....|- ..+| .
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~~~~-------------------------~lsld~~r~~lg~~~~~e~--sqk~~~~~ 54 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFLQNY-------------------------VLSLDDLRLLLGVSASKEN--SQKNDELV 54 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCCCcc-------------------------eecHHHHHHHhhhchhhhh--ccccHHHH
Confidence 56899999999999999986654322 2333444432210000000 0010 1
Q ss_pred ccccHHHHHHHHHhCCeEEEEeCH---HHHHHHHh----cCCCCEEEEEccCcccccc-----C---chHHHHHHHHHHH
Q psy933 170 YGTKLETIRRIHQEGKIAILDVEP---QALKILRT----GEFSPFVVFIAAPQLQNLS-----D---YDGSLEKLAKESD 234 (330)
Q Consensus 170 YGts~~~i~~v~~~gk~~vldv~~---~~v~~L~~----~~~~p~vIfI~pps~~~l~-----~---~~e~~~rl~~~~~ 234 (330)
.-.-....+.-+++|++.|+|... +-.+.+.. .+..+++|.+..|-..-+. + ..+-+.++.+...
T Consensus 55 ~~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rqv~~~VI~r~~r~~~ 134 (168)
T COG4639 55 WDILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRERQVPEEVIPRMLRETI 134 (168)
T ss_pred HHHHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccchhCCHHHHHHHHHHHH
Confidence 123344556677899999998865 55444442 4677888888776322221 1 1334455555422
Q ss_pred HHHhhccccceEEEecCCHH
Q psy933 235 ILKSAYEHFFDLTVVNNDIE 254 (330)
Q Consensus 235 ~ie~~~~~~fD~vI~N~dle 254 (330)
.++ -+.-|-++..+...+
T Consensus 135 ~~l--~~e~~~~~~~~~s~e 152 (168)
T COG4639 135 DLL--EKEPFRYVWTLSSPE 152 (168)
T ss_pred hhc--cCCCeEEEEecCCHH
Confidence 222 234456666665444
No 115
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=97.47 E-value=0.0024 Score=54.37 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=34.3
Q ss_pred EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCe-eEEEecccc
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGR-AYYFISHDE 149 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~-dy~fvs~~~ 149 (330)
|+|+|++|||||||.++|....+ -....++||+.|..+- .++. .+.+++...
T Consensus 3 v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG 57 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPG 57 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCc
Confidence 78999999999999999986543 1223456777775553 2332 445555443
No 116
>KOG3354|consensus
Probab=97.47 E-value=0.00067 Score=58.79 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=48.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhhHHhccceeeEEeecCccccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAANQYLEYGTHEDAMYGT 172 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~~i~~~~fle~~~~~g~~YGt 172 (330)
-.|+++|++|+||||+.+.|.+.+.-.| .+|-|||-- .++.|.+.+.-++ ...-+.+--.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F---------------~dgDd~Hp~~NveKM~~GipLnD----~DR~pWL~~i 73 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKF---------------IDGDDLHPPANVEKMTQGIPLND----DDRWPWLKKI 73 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcc---------------cccccCCCHHHHHHHhcCCCCCc----ccccHHHHHH
Confidence 3899999999999999999999876444 567777753 3455554333222 1111111111
Q ss_pred cHHHHHHHHHhCCeEEEEeCH
Q psy933 173 KLETIRRIHQEGKIAILDVEP 193 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~~ 193 (330)
-.+....++.|+-+||-++.
T Consensus 74 -~~~~~~~l~~~q~vVlACSa 93 (191)
T KOG3354|consen 74 -AVELRKALASGQGVVLACSA 93 (191)
T ss_pred -HHHHHHHhhcCCeEEEEhHH
Confidence 12233344578999988863
No 117
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.46 E-value=0.0001 Score=59.89 Aligned_cols=23 Identities=17% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|||||||||+++.|++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999875
No 118
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.46 E-value=0.0001 Score=78.35 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=55.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
++..++|+||||+|||||++.|...++ |..|+ +||.+..-++...+.+.+ .++.++..++..
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr 572 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQ-------------PTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence 568999999999999999999988765 44454 488777666666655543 477788788887
Q ss_pred Cc-ccccc---HHHHHHHHH
Q psy933 167 DA-MYGTK---LETIRRIHQ 182 (330)
Q Consensus 167 g~-~YGts---~~~i~~v~~ 182 (330)
+| .||.+ .+.+.++++
T Consensus 573 eNI~~g~~~~~~e~i~~al~ 592 (711)
T TIGR00958 573 ENIAYGLTDTPDEEIMAAAK 592 (711)
T ss_pred HHHhcCCCCCCHHHHHHHHH
Confidence 77 46743 344444443
No 119
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=97.46 E-value=0.00038 Score=69.55 Aligned_cols=88 Identities=16% Similarity=0.303 Sum_probs=62.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY 170 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y 170 (330)
+-.+||+|+|.||||+|.|.|+.+.. -..+.+|-|||.-=+. .++|...+.++..-.+ .....+|- -
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~d~-AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiR---et~d~VE~-------i 285 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGRDR-AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIR---ETDDVVER-------I 285 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcCCc-eEecCCCCCccceEEEEEEECCEEEEEEecCCcc---cCccHHHH-------H
Confidence 35799999999999999999999876 4888899999987555 4589988888876654 23333332 2
Q ss_pred cccHHHHHHHHHhCCeEEEEeCH
Q psy933 171 GTKLETIRRIHQEGKIAILDVEP 193 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~~ 193 (330)
|.-++ .+.+++...+++-+|.
T Consensus 286 GIeRs--~~~i~~ADlvL~v~D~ 306 (454)
T COG0486 286 GIERA--KKAIEEADLVLFVLDA 306 (454)
T ss_pred HHHHH--HHHHHhCCEEEEEEeC
Confidence 33332 4455666666665553
No 120
>PLN02422 dephospho-CoA kinase
Probab=97.46 E-value=0.00034 Score=64.59 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=27.4
Q ss_pred cccceEEEecC-CHHHHHHHHHHHHHHhcCCCcc
Q psy933 241 EHFFDLTVVNN-DIEETIGILEKAIEELHTTPQW 273 (330)
Q Consensus 241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~~~~~~W 273 (330)
....|++|.|+ ++++...++..+++.+...-.|
T Consensus 168 ~~~AD~VI~N~gs~e~L~~qv~~ll~~l~~~~~~ 201 (232)
T PLN02422 168 RSKADIVIDNSGSLEDLKQQFQKVLEKIRAPLTW 201 (232)
T ss_pred HhhCCEEEECCCCHHHHHHHHHHHHHHHhcchHH
Confidence 46689999999 9999999999999998744444
No 121
>PRK00089 era GTPase Era; Reviewed
Probab=97.46 E-value=0.0017 Score=61.28 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=36.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEeccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHD 148 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~ 148 (330)
-.|+|+|++|||||||.+.|+.... ......+.|||..-.+-. ++..+.|++..
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTP 61 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTP 61 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCce-eecCCCCCcccccEEEEEEcCCceEEEEECC
Confidence 4799999999999999999986532 234556788886533311 23455565543
No 122
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.45 E-value=8.6e-05 Score=68.96 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccc-------cccccCCCCcccCCeeEEEecccchhh--------HHhc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV-------PHTTRSPRSDEENGRAYYFISHDEMMS--------DIAA 156 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v-------~~TTR~pr~~E~~G~dy~fvs~~~f~~--------~i~~ 156 (330)
..+.++|+|+||||||||+|.|+...-.. ...+ .||||....-..+| .+.+|..-|.. .--.
T Consensus 119 ~~~~~~~~G~sgvGKStLiN~L~~~~~~~-t~~i~~~~~~G~hTT~~~~l~~l~~--~~liDtPG~~~~~l~~~~~~~~~ 195 (245)
T TIGR00157 119 QNRISVFAGQSGVGKSSLINALDPSVKQQ-VNDISSKLGLGKHTTTHVELFHFHG--GLIADTPGFNEFGLWHLEPEQLT 195 (245)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhhhhhcc-ccceeccCCCCCCcCCceEEEEcCC--cEEEeCCCccccCCCCCCHHHHH
Confidence 34799999999999999999999754321 2223 37998765554433 24444332221 1123
Q ss_pred cceeeEEeecCc-------cccccHHHHHHHHHhCCe
Q psy933 157 NQYLEYGTHEDA-------MYGTKLETIRRIHQEGKI 186 (330)
Q Consensus 157 ~~fle~~~~~g~-------~YGts~~~i~~v~~~gk~ 186 (330)
..|.|+.++.+. +-+-+-.+|++++++|++
T Consensus 196 ~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~i 232 (245)
T TIGR00157 196 QGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGEI 232 (245)
T ss_pred HhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCCC
Confidence 344444433221 335678889999988873
No 123
>PRK06217 hypothetical protein; Validated
Probab=97.45 E-value=0.00039 Score=61.28 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|+||||||||+++|.+.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999876
No 124
>KOG1191|consensus
Probab=97.43 E-value=0.00026 Score=70.98 Aligned_cols=89 Identities=22% Similarity=0.334 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY 170 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y 170 (330)
+--|+|+||++||||+|.|.|.++.- -+.+++|-|||..=+- +++|+....+|..-..+ ..++-+|. -
T Consensus 268 gl~iaIvGrPNvGKSSLlNaL~~~dr-sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe--~~~~~iE~-------~ 337 (531)
T KOG1191|consen 268 GLQIAIVGRPNVGKSSLLNALSREDR-SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE--ESNDGIEA-------L 337 (531)
T ss_pred CCeEEEEcCCCCCHHHHHHHHhcCCc-eEeCCCCCcchhhheeEeecCCeEEEEEecccccc--ccCChhHH-------H
Confidence 45799999999999999999998765 6899999999987554 46999988888876654 23332322 2
Q ss_pred cccHHHHHHHHHhCCeEEEEeCH
Q psy933 171 GTKLETIRRIHQEGKIAILDVEP 193 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~~ 193 (330)
| ..--++.+....+|++.+++
T Consensus 338 g--I~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 338 G--IERARKRIERADVILLVVDA 358 (531)
T ss_pred h--HHHHHHHHhhcCEEEEEecc
Confidence 2 33335566677788888877
No 125
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.41 E-value=0.00064 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|++|+|||||++.|....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998875
No 126
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.41 E-value=0.0014 Score=59.82 Aligned_cols=26 Identities=15% Similarity=0.397 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
...|.|.||+|+||||+++.|.+.+.
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 127
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.40 E-value=0.001 Score=59.92 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHHhhC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~ 117 (330)
|+|+||+||||||++++|.+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999876
No 128
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.39 E-value=0.00036 Score=61.72 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|..|+||||+++.|.+..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~ 23 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY 23 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 37899999999999999998764
No 129
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00019 Score=73.32 Aligned_cols=79 Identities=24% Similarity=0.339 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
.++.++|+||||+|||||.+.|+...+ |..|| +||.+-.-++.+.+.+. +.++.++..++.+
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~-------------~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTir 412 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLA-------------PTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIR 412 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCC-------------CCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHH
Confidence 568999999999999999999987665 33454 48888777888777764 4588999999998
Q ss_pred Ccc-cc---ccHHHHHHHHHh
Q psy933 167 DAM-YG---TKLETIRRIHQE 183 (330)
Q Consensus 167 g~~-YG---ts~~~i~~v~~~ 183 (330)
+|. .| .+.+.|.+++++
T Consensus 413 eNi~l~~~~~s~e~i~~al~~ 433 (559)
T COG4988 413 ENILLARPDASDEEIIAALDQ 433 (559)
T ss_pred HHhhccCCcCCHHHHHHHHHH
Confidence 883 33 345666666653
No 130
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.38 E-value=0.0016 Score=62.94 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+.|+|+|++|+|||||++.|...+.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~ 187 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFN 187 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 56899999999999999999998753
No 131
>PRK13973 thymidylate kinase; Provisional
Probab=97.37 E-value=0.0015 Score=59.20 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr 133 (330)
++.|||-|+.||||||++++|.+.+.. -+..+ ++|+.|.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~-~g~~~-~~~~~p~ 41 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRA-AGYDV-LVTREPG 41 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeE-EEEECCC
Confidence 578999999999999999999988643 12222 5566664
No 132
>PRK12338 hypothetical protein; Provisional
Probab=97.37 E-value=0.0013 Score=63.46 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..|+|.|+||+||||++..|++..+
T Consensus 5 ~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 5 YVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
Confidence 5788899999999999999998864
No 133
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.34 E-value=0.00013 Score=77.32 Aligned_cols=67 Identities=21% Similarity=0.353 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
++..|+|+||||+|||||++.|...++ |..|+ +||.+..-++.+.+.+. +.++.++..++..
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 565 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQ-------------ARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL 565 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC-------------CCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHH
Confidence 568999999999999999999987764 44554 48877766676666654 3477788777777
Q ss_pred Cc-ccc
Q psy933 167 DA-MYG 171 (330)
Q Consensus 167 g~-~YG 171 (330)
+| .||
T Consensus 566 eNi~l~ 571 (708)
T TIGR01193 566 ENLLLG 571 (708)
T ss_pred HHHhcc
Confidence 77 355
No 134
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.33 E-value=0.00084 Score=49.90 Aligned_cols=23 Identities=17% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|++|+||||+++.|.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 135
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.32 E-value=0.00022 Score=74.06 Aligned_cols=67 Identities=22% Similarity=0.352 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
++..++|+||||+|||||++.|...++ |..|+ .+|.+..-++.+.+.+.+ .++.++..++..
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 426 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFD-------------PQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIE 426 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC-------------CCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHH
Confidence 568999999999999999999987765 34444 478777766666655543 366677777777
Q ss_pred Cc-ccc
Q psy933 167 DA-MYG 171 (330)
Q Consensus 167 g~-~YG 171 (330)
+| .||
T Consensus 427 ~Ni~~~ 432 (588)
T PRK13657 427 DNIRVG 432 (588)
T ss_pred HHHhcC
Confidence 76 355
No 136
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.31 E-value=0.0049 Score=54.72 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=36.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCcccc--ccccccCCCC--cccCCeeEEEecccch
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYP--VPHTTRSPRS--DEENGRAYYFISHDEM 150 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~--v~~TTR~pr~--~E~~G~dy~fvs~~~f 150 (330)
.|+|+|.+|||||||.|.|+... .|... .+.+|+.... .+.+|....+||..-|
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~--~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~ 59 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGRE--VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGL 59 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCC--ccccccCCCCcccccceeeEEECCeEEEEEECcCC
Confidence 58999999999999999998763 24332 2234554332 3557777777766544
No 137
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.31 E-value=0.00016 Score=76.59 Aligned_cols=78 Identities=19% Similarity=0.292 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
.+..|+|+||||+|||||++.|+..++ |..|+ .||.|..-++.+++.+.+ .++.++..++..
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQ-------------PWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence 568999999999999999999988765 44454 478776666666655544 367778777777
Q ss_pred Ccc-ccc---cHHHHHHHHH
Q psy933 167 DAM-YGT---KLETIRRIHQ 182 (330)
Q Consensus 167 g~~-YGt---s~~~i~~v~~ 182 (330)
+|. +|. +.+.+.++++
T Consensus 571 eNi~l~~~~~~~~~i~~al~ 590 (710)
T TIGR03796 571 DNLTLWDPTIPDADLVRACK 590 (710)
T ss_pred HHhhCCCCCCCHHHHHHHHH
Confidence 774 553 3444444443
No 138
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.30 E-value=0.00011 Score=77.90 Aligned_cols=77 Identities=16% Similarity=0.310 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
.+..|+|+|+||||||||++.|...+. |-.|+ .||.|-.-++...+.+. +.++.|+..|...
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~-------------p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~ 564 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYK-------------PQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIR 564 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHH
Confidence 457899999999999999998887654 44554 49999888888888874 4689999999988
Q ss_pred Ccc-ccccHHHHHHHH
Q psy933 167 DAM-YGTKLETIRRIH 181 (330)
Q Consensus 167 g~~-YGts~~~i~~v~ 181 (330)
+|. .|-+..+.++++
T Consensus 565 eNi~l~~p~~~~e~i~ 580 (709)
T COG2274 565 ENIALGNPEATDEEII 580 (709)
T ss_pred HHHhcCCCCCCHHHHH
Confidence 874 444433333333
No 139
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.30 E-value=0.0032 Score=63.86 Aligned_cols=57 Identities=23% Similarity=0.382 Sum_probs=43.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
...|+|+|++|||||||+++|+.... .+....+.|||.+-.. +.+|..|.+++..-+
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~ 269 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGL 269 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCc
Confidence 36799999999999999999997542 2456688899877543 457777888776654
No 140
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.29 E-value=0.0002 Score=75.88 Aligned_cols=77 Identities=22% Similarity=0.390 Sum_probs=52.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
++..|+|+||||+|||||++.|...++ |..|+ .||.+..-++...+.+.+ .++.++..++..
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~-------------p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQ-------------PTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 568999999999999999999987765 34454 478776666666655433 466777777777
Q ss_pred Ccc-ccc---cHHHHHHHH
Q psy933 167 DAM-YGT---KLETIRRIH 181 (330)
Q Consensus 167 g~~-YGt---s~~~i~~v~ 181 (330)
+|. +|. +.+.+.+++
T Consensus 557 eNi~~~~~~~~~~~i~~a~ 575 (694)
T TIGR03375 557 DNIALGAPYADDEEILRAA 575 (694)
T ss_pred HHHhCCCCCCCHHHHHHHH
Confidence 763 552 344444444
No 141
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.0041 Score=54.75 Aligned_cols=20 Identities=25% Similarity=0.491 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q psy933 95 TLVLLGAHGVGRRHIKNTLI 114 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~ 114 (330)
.|+|.|.+|+||||++++|.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 142
>PRK13808 adenylate kinase; Provisional
Probab=97.28 E-value=0.0042 Score=60.29 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=21.0
Q ss_pred EEEEcCCCccHHHHHHHHHhhCC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p 118 (330)
|+|+||+||||+|++.+|.+.+.
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88899999999999999998763
No 143
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.28 E-value=0.00053 Score=61.70 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=24.4
Q ss_pred cccceEEEecC-CHHHHHHHHHHHHHHhcC
Q psy933 241 EHFFDLTVVNN-DIEETIGILEKAIEELHT 269 (330)
Q Consensus 241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~~~ 269 (330)
....|++|.|+ ++++..+++..+++++..
T Consensus 168 ~~~ad~vI~N~g~~e~l~~~v~~~~~~~~~ 197 (200)
T PRK14734 168 LKAADIVVDNNGTREQLLAQVDGLIAEILS 197 (200)
T ss_pred HHhCCEEEECcCCHHHHHHHHHHHHHHHHh
Confidence 35688999998 999999999999887754
No 144
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.27 E-value=0.00025 Score=73.50 Aligned_cols=78 Identities=21% Similarity=0.294 Sum_probs=51.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
.+..++|+||||+|||||.+.|...++ |..|+ .+|++..-++.+.+.+. +.+..++..++..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~-------------p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 431 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWD-------------PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLR 431 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHH
Confidence 567999999999999999999987764 33444 37777666666555543 3456666666666
Q ss_pred Ccc-ccc---cHHHHHHHHH
Q psy933 167 DAM-YGT---KLETIRRIHQ 182 (330)
Q Consensus 167 g~~-YGt---s~~~i~~v~~ 182 (330)
+|. ||- +.+.+.++++
T Consensus 432 ~Ni~~~~~~~~~~~i~~al~ 451 (574)
T PRK11160 432 DNLLLAAPNASDEALIEVLQ 451 (574)
T ss_pred HHhhcCCCccCHHHHHHHHH
Confidence 663 542 3334444443
No 145
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00056 Score=62.41 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=24.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDK 120 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~ 120 (330)
..|.|.|+|||||||++++|.+.++..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 588999999999999999999998854
No 146
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.27 E-value=0.0036 Score=52.10 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=33.8
Q ss_pred EEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEeccc
Q psy933 97 VLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHD 148 (330)
Q Consensus 97 vLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~ 148 (330)
+|+|.+|||||||.++|..... .+....+.||+..... +.+|..+.+++..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dtp 53 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTG 53 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECC
Confidence 5899999999999999987642 2444566677654433 2345555555544
No 147
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.27 E-value=0.00024 Score=73.72 Aligned_cols=78 Identities=19% Similarity=0.324 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
++..|+|+|+||+|||||++.|...++ |..|+ .||.+..-++.+.+.+.+ .++.++..++..
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~-------------p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~ 432 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYP-------------LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFL 432 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC-------------CCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHH
Confidence 567999999999999999999987765 33444 488887777766666544 477777777777
Q ss_pred Cc-cccc--cHHHHHHHHH
Q psy933 167 DA-MYGT--KLETIRRIHQ 182 (330)
Q Consensus 167 g~-~YGt--s~~~i~~v~~ 182 (330)
+| .||- +.+.+.++++
T Consensus 433 ~NI~~~~~~~d~~i~~a~~ 451 (592)
T PRK10790 433 ANVTLGRDISEEQVWQALE 451 (592)
T ss_pred HHHHhCCCCCHHHHHHHHH
Confidence 66 3443 3344444443
No 148
>PRK12288 GTPase RsgA; Reviewed
Probab=97.25 E-value=0.00011 Score=71.66 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=31.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc-------ccccCCCCccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP-------HTTRSPRSDEE 137 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~-------~TTR~pr~~E~ 137 (330)
.++++|+|+||||||||+|.|+....- -...++ |||+....-..
T Consensus 205 ~ki~~~vG~sgVGKSTLiN~Ll~~~~~-~t~~is~~~~rGrHTT~~~~l~~l 255 (347)
T PRK12288 205 GRISIFVGQSGVGKSSLINALLPEAEI-LVGDVSDNSGLGQHTTTAARLYHF 255 (347)
T ss_pred hCCEEEECCCCCCHHHHHHHhccccce-eeccccCcCCCCcCceeeEEEEEe
Confidence 468999999999999999999865432 233444 78887554433
No 149
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.25 E-value=0.00028 Score=72.25 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
++..++|+||||+|||||.+.|...++ |..|++ +|.+..-++.+++.+.+ .+..++.-++..
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~ 413 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVD-------------PTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIA 413 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHH
Confidence 567999999999999999999987664 445554 77777666666555433 355666666666
Q ss_pred Cc
Q psy933 167 DA 168 (330)
Q Consensus 167 g~ 168 (330)
+|
T Consensus 414 ~N 415 (529)
T TIGR02857 414 EN 415 (529)
T ss_pred HH
Confidence 66
No 150
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.25 E-value=0.0014 Score=67.29 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=56.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY 170 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y 170 (330)
.+...|+++|++||||||++++++.... |..|+.+.+.. |
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g-----------------------~~~vn~D~lg~-----------------~ 406 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAG-----------------------YKHVNADTLGS-----------------T 406 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcC-----------------------CeEECcHHHHH-----------------H
Confidence 4567999999999999999999987531 44555555421 1
Q ss_pred cccHHHHHHHHHhCCeEEEEeC---HHH----HHHHHhcCCCCEEEEEccC
Q psy933 171 GTKLETIRRIHQEGKIAILDVE---PQA----LKILRTGEFSPFVVFIAAP 214 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~---~~~----v~~L~~~~~~p~vIfI~pp 214 (330)
-.-...+++.+++|+.+|+|-. ... +...+..+....+||+..|
T Consensus 407 ~~~~~~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p 457 (526)
T TIGR01663 407 QNCLTACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAP 457 (526)
T ss_pred HHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC
Confidence 1224567888999999999875 222 2223344555667777776
No 151
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.23 E-value=0.00025 Score=62.43 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHh
Q psy933 95 TLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~ 115 (330)
.|+|+|++||||||+++.|.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 152
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.23 E-value=0.0063 Score=62.37 Aligned_cols=27 Identities=15% Similarity=0.443 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..|+|.|||||||||+++.|.+.+.
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~ 309 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLG 309 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999998763
No 153
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.23 E-value=0.0024 Score=55.73 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=22.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDK 120 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~ 120 (330)
--|.|.||+|||||||+.++++...+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 468899999999999999998765543
No 154
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.22 E-value=0.0098 Score=49.43 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..|+|+|++|+|||||.++|...
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 155
>KOG0057|consensus
Probab=97.22 E-value=0.00014 Score=73.67 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=63.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh---ccceeeEEeecCc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA---ANQYLEYGTHEDA 168 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~---~~~fle~~~~~g~ 168 (330)
++.-|+|+|++||||||+.+.|++.+. +.+.|- +||.|..-++.+.+.+.|. ++.-|...+.--|
T Consensus 377 kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~----------IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~N 444 (591)
T KOG0057|consen 377 KGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSIL----------IDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYN 444 (591)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEE----------ECCeeHhhhChHHhhhheeEeCCcccccchhHHHH
Confidence 467899999999999999999998875 444432 6999999999999988764 6666666655445
Q ss_pred -cccccHHHHHHHHHhCCeE
Q psy933 169 -MYGTKLETIRRIHQEGKIA 187 (330)
Q Consensus 169 -~YGts~~~i~~v~~~gk~~ 187 (330)
.||.+..+-+++.+..|.+
T Consensus 445 I~YGn~sas~eeV~e~~k~a 464 (591)
T KOG0057|consen 445 IKYGNPSASDEEVVEACKRA 464 (591)
T ss_pred hhcCCCCcCHHHHHHHHHHc
Confidence 7998777777776654443
No 156
>PRK02496 adk adenylate kinase; Provisional
Probab=97.22 E-value=0.0021 Score=56.44 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+||+||||||+++.|.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 388999999999999999998763
No 157
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.21 E-value=0.005 Score=51.74 Aligned_cols=23 Identities=13% Similarity=0.101 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|++|||||||.++|....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~ 24 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE 24 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc
Confidence 58999999999999999998543
No 158
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.20 E-value=0.00034 Score=72.07 Aligned_cols=78 Identities=19% Similarity=0.277 Sum_probs=54.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhh---HHhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMS---DIAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~---~i~~~~fle~~~~~ 166 (330)
.+..|+|+|+||+|||||++.|...++ |..|+ .+|+++.-++.+++.+ .+.++.++..++..
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~-------------~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYE-------------PDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 568999999999999999999987764 33443 3777766666666554 33477788888877
Q ss_pred Cc-cccc----cHHHHHHHHH
Q psy933 167 DA-MYGT----KLETIRRIHQ 182 (330)
Q Consensus 167 g~-~YGt----s~~~i~~v~~ 182 (330)
+| .||. +.+.+.++++
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~ 444 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALA 444 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHH
Confidence 77 3553 3445555443
No 159
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.19 E-value=0.0004 Score=61.34 Aligned_cols=53 Identities=21% Similarity=0.204 Sum_probs=38.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC-------CCccccccccccCCCCcccCCeeEEEec
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP-------DKYAYPVPHTTRSPRSDEENGRAYYFIS 146 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p-------~~f~~~v~~TTR~pr~~E~~G~dy~fvs 146 (330)
+..++|+|.+|||||||+|.|....- ..-....|.|||.+.....+. .+.++|
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~D 186 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYD 186 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEe
Confidence 46799999999999999999987532 113456788999887665532 344544
No 160
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.17 E-value=0.0014 Score=60.09 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..|+|.||+||||||+++.|++.+.
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~ 29 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLG 29 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999998764
No 161
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.16 E-value=0.0065 Score=53.55 Aligned_cols=26 Identities=23% Similarity=0.537 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..++|+||||+|||||++.|.....
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987653
No 162
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.15 E-value=0.0004 Score=71.66 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=51.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
++..++|+||||+|||||++.|+..++ |..|+ .||.+..-++...+.+. +.++.++.-++..
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~-------------p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~ 431 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYD-------------PQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVM 431 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC-------------CCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHH
Confidence 568999999999999999999988765 33454 47776655555554443 2366677777776
Q ss_pred Cc-cccc---cHHHHHHHH
Q psy933 167 DA-MYGT---KLETIRRIH 181 (330)
Q Consensus 167 g~-~YGt---s~~~i~~v~ 181 (330)
+| .||. +.+.+.+++
T Consensus 432 ~Ni~~~~~~~~~~~~~~~l 450 (576)
T TIGR02204 432 ENIRYGRPDATDEEVEAAA 450 (576)
T ss_pred HHHhcCCCCCCHHHHHHHH
Confidence 66 3543 234444444
No 163
>COG1159 Era GTPase [General function prediction only]
Probab=97.15 E-value=0.0051 Score=58.43 Aligned_cols=168 Identities=17% Similarity=0.214 Sum_probs=89.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC--CeeEEEecccchhhH-HhccceeeEEeecCcccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN--GRAYYFISHDEMMSD-IAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~--G~dy~fvs~~~f~~~-i~~~~fle~~~~~g~~YG 171 (330)
.|+|+|.+.||||||.|.|+..-- -..+..|-|||..=.|-.. .....|||..-|... -.-|++
T Consensus 8 fVaIiGrPNvGKSTLlN~l~G~Ki-sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~------------ 74 (298)
T COG1159 8 FVAIIGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGEL------------ 74 (298)
T ss_pred EEEEEcCCCCcHHHHHHHHhcCce-EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHH------------
Confidence 699999999999999999997643 3677788899977555332 223456666544321 111111
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHH---------HHHHHhcCCCCEEEEEc-cCccccccCchHHHHHHHHHHHHHHhhcc
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQA---------LKILRTGEFSPFVVFIA-APQLQNLSDYDGSLEKLAKESDILKSAYE 241 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~---------v~~L~~~~~~p~vIfI~-pps~~~l~~~~e~~~rl~~~~~~ie~~~~ 241 (330)
-..++.+.+..-..+++.++..- +..|+. -..|.++-|. .. .+. .+..+..+.+... ..
T Consensus 75 -m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~-~~~pvil~iNKID---~~~-~~~~l~~~~~~~~-----~~ 143 (298)
T COG1159 75 -MNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK-TKTPVILVVNKID---KVK-PKTVLLKLIAFLK-----KL 143 (298)
T ss_pred -HHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh-cCCCeEEEEEccc---cCC-cHHHHHHHHHHHH-----hh
Confidence 13444555555666666665432 556666 2235444332 21 111 1111222222211 12
Q ss_pred ccceEEEecC-CHHHHHHHHHHHH-HHhcCCCccccccccccchhhh
Q psy933 242 HFFDLTVVNN-DIEETIGILEKAI-EELHTTPQWIPVSWLAKESDIL 286 (330)
Q Consensus 242 ~~fD~vI~N~-dle~a~~~L~~~i-~~~~~~~~WvP~sw~~~~~~~~ 286 (330)
+-|..++.-+ ---..+..|.+.+ ..+...|.-.|...+-+.+++.
T Consensus 144 ~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf 190 (298)
T COG1159 144 LPFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERF 190 (298)
T ss_pred CCcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHH
Confidence 3455554332 1112233344433 4556677788888887766654
No 164
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.14 E-value=0.0073 Score=60.04 Aligned_cols=157 Identities=18% Similarity=0.304 Sum_probs=81.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT 172 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt 172 (330)
.|+++|.+|+|||||+++|+.... .+....+.||+.+... +.+|..|.+++..-+.+......-+| .|..
T Consensus 174 ~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e-------~~~~ 245 (429)
T TIGR03594 174 KIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVE-------KYSV 245 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHH-------HHHH
Confidence 589999999999999999987542 3456678888876433 34666777776554432111111111 1211
Q ss_pred cHHHHHHHHHhCCeEEEEeCH------HHHHHHHh--cCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhcc--c
Q psy933 173 KLETIRRIHQEGKIAILDVEP------QALKILRT--GEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYE--H 242 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~~------~~v~~L~~--~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~--~ 242 (330)
..+ ...+.....||+.+|. +-.+.++. ....|++|.+.--+ +.+..+..+.+.+... ..+. .
T Consensus 246 -~~~-~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~D---l~~~~~~~~~~~~~~~---~~~~~~~ 317 (429)
T TIGR03594 246 -LRT-LKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWD---LVKDEKTREEFKKELR---RKLPFLD 317 (429)
T ss_pred -HHH-HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcc---cCCCHHHHHHHHHHHH---HhcccCC
Confidence 111 2244556666666542 11222221 23467777765432 2122222333322222 1111 1
Q ss_pred cceEE----EecCCHHHHHHHHHHHHHHh
Q psy933 243 FFDLT----VVNNDIEETIGILEKAIEEL 267 (330)
Q Consensus 243 ~fD~v----I~N~dle~a~~~L~~~i~~~ 267 (330)
.+.++ ..+.++++.++.+..+.+..
T Consensus 318 ~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 318 FAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 12222 23458999888888877654
No 165
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.12 E-value=0.011 Score=51.69 Aligned_cols=157 Identities=19% Similarity=0.279 Sum_probs=80.1
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcc
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM 169 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~ 169 (330)
|+--|+|+|+||-.+|||||+++|+..+...+ ...-|++|.| +-.-.++=+.|..|..--
T Consensus 5 p~F~K~VailG~ESsGKStLv~kLA~~fnt~~-------------~wEY~Re~v~-------~~l~gdeal~y~Dy~~ia 64 (187)
T COG3172 5 PFFVKTVAILGGESSGKSTLVNKLANIFNTTS-------------AWEYGREYVF-------EHLGGDEALQYSDYAKIA 64 (187)
T ss_pred hhhheeeeeecCcccChHHHHHHHHHHhCCCc-------------hhHHHHHHHH-------HHhCCchhhhhccHHHHH
Confidence 33447999999999999999999998764211 1222333322 111222123333332212
Q ss_pred ccccHHHHHH-HHHhCCeEEEEeCHHHHHHHHhc--C-------------CCCEEEEEccCcc----ccccCchH--HHH
Q psy933 170 YGTKLETIRR-IHQEGKIAILDVEPQALKILRTG--E-------------FSPFVVFIAAPQL----QNLSDYDG--SLE 227 (330)
Q Consensus 170 YGts~~~i~~-v~~~gk~~vldv~~~~v~~L~~~--~-------------~~p~vIfI~pps~----~~l~~~~e--~~~ 227 (330)
-|- .+.++. +-...+++++|.|+-+-+...+. + .+-.+|.+ +|+. +-++.... +-+
T Consensus 65 ~Gq-~~~~d~av~~a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~r~DL~lLl-~p~t~wvaDG~R~~~~~~~R~ 142 (187)
T COG3172 65 LGQ-AAYEDAAVRYANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEYRFDLTLLL-EPNTPWVADGLRSLGSSVQRQ 142 (187)
T ss_pred hhh-HHHHHHHHhCCCceEEEeccHHHHHHHHHHHcccCCchHHHHHhhcccceEEEc-CCCCceeCCCccccccHhHHH
Confidence 222 122222 33457888888886543332221 1 12223444 4432 22332222 112
Q ss_pred HHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHhcCC
Q psy933 228 KLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEELHTT 270 (330)
Q Consensus 228 rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~~~ 270 (330)
...+..+++-..+ .--+|++.+ +..+=+.+..++++++-++
T Consensus 143 ~F~~~l~~~L~~~--~~~~v~i~~~~y~eR~~~~~~aV~ell~~ 184 (187)
T COG3172 143 EFQNLLEQMLEEN--NIPFVVIEGEDYLERYLQAVEAVEELLGE 184 (187)
T ss_pred HHHHHHHHHHHHh--CCcEEEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 2223333332233 345666666 9999999999999887543
No 166
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.12 E-value=0.0066 Score=51.53 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHhhCC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p 118 (330)
|+|+|++|||||||.++|...+.
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~~ 24 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLFS 24 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhcc
Confidence 78999999999999999986543
No 167
>KOG0056|consensus
Probab=97.12 E-value=0.00025 Score=71.31 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHH---hccceeeEEeecCc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDI---AANQYLEYGTHEDA 168 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~g~ 168 (330)
.+++|+|+||||+|||||++.|.+.+. .-.++| ++||.|..-|+.......| .++.-+.-.+.--|
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffd-v~sGsI----------~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yN 631 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFD-VNSGSI----------TIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYN 631 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhh-ccCceE----------EEcCchHHHHHHHHHHHhcCcccCcceeecceeeeh
Confidence 568999999999999999999998764 333333 5788888877777776644 35555544444444
Q ss_pred -cccccHHHHHHHHHhCCe
Q psy933 169 -MYGTKLETIRRIHQEGKI 186 (330)
Q Consensus 169 -~YGts~~~i~~v~~~gk~ 186 (330)
.||-+-++-+++.+..|.
T Consensus 632 Iryak~~AsneevyaAAkA 650 (790)
T KOG0056|consen 632 IRYAKPSASNEEVYAAAKA 650 (790)
T ss_pred eeecCCCCChHHHHHHHHH
Confidence 687666665665554443
No 168
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.11 E-value=0.00093 Score=66.61 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=45.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMM 151 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~ 151 (330)
+.|+|+|-+.||||||.|||...- .-...-.|-|||.+..+ |..|..+..|+.--++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~ 62 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLD 62 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-eeEeecCCCCccCCccceeEEcCceEEEEECCCCC
Confidence 579999999999999999999763 24666789999998765 6688888877764443
No 169
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.11 E-value=0.00058 Score=61.38 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=36.8
Q ss_pred ecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCC
Q psy933 86 VKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENG 139 (330)
Q Consensus 86 ~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G 139 (330)
..+|+....=|+++|-|.||||||+|.|...-.--..+-.|-.||.+---++++
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~ 70 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD 70 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC
Confidence 345666667899999999999999999987542223344556666554444443
No 170
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.0017 Score=56.97 Aligned_cols=25 Identities=28% Similarity=0.611 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++.+|++|-+||||||+.+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 3789999999999999999887764
No 171
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.10 E-value=0.00064 Score=57.90 Aligned_cols=54 Identities=28% Similarity=0.338 Sum_probs=37.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDE 149 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~ 149 (330)
|.|+|+|++|||||||+++|...... ....+.||+.+..+. .++..+.++|..-
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G 56 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE--VAPYPFTTKSLFVGHFDYKYLRWQVIDTPG 56 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc--cCCCCCcccceeEEEEccCceEEEEEECCC
Confidence 47899999999999999999876431 233566777665443 2445666666543
No 172
>KOG0055|consensus
Probab=97.10 E-value=0.00023 Score=78.21 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=52.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhh---HHhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMS---DIAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~---~i~~~~fle~~~~~ 166 (330)
.++.++|+|||||||||++..|.+. .| |-.|. +||.|..-++..-.++ .+.+..-|.-++..
T Consensus 1015 ~GqTvALVG~SGsGKSTvI~LLeRf-Yd------------p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIr 1081 (1228)
T KOG0055|consen 1015 AGQTVALVGPSGSGKSTVISLLERF-YD------------PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIR 1081 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh-cC------------CCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHH
Confidence 5689999999999999999966544 33 33343 4787777666666555 34566777777888
Q ss_pred Cc-cccccHHHHHHHH
Q psy933 167 DA-MYGTKLETIRRIH 181 (330)
Q Consensus 167 g~-~YGts~~~i~~v~ 181 (330)
.| .||....+.++++
T Consensus 1082 ENI~YG~~~vs~~eIi 1097 (1228)
T KOG0055|consen 1082 ENIAYGSEEVSEEEII 1097 (1228)
T ss_pred HHHhccCCCCCHHHHH
Confidence 88 7993222334444
No 173
>PRK07933 thymidylate kinase; Validated
Probab=97.10 E-value=0.013 Score=53.12 Aligned_cols=37 Identities=24% Similarity=0.452 Sum_probs=27.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr 133 (330)
.|+|-|+.||||||++++|.+.+... +..| ++|+.|.
T Consensus 2 ~IviEG~dGsGKST~~~~L~~~L~~~-g~~v-~~~~~P~ 38 (213)
T PRK07933 2 LIAIEGVDGAGKRTLTEALRAALEAR-GRSV-ATLAFPR 38 (213)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC-CCeE-EEEecCC
Confidence 69999999999999999999887532 2233 3455553
No 174
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.09 E-value=0.00053 Score=71.01 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=42.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
++..++|+||||+|||||.+.|...++ |..|++ +|.+..-++...+.+. +.++.++..++..
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~-------------p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFD-------------VSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC-------------CCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 568999999999999999999987654 344543 6665544444444332 2355566566665
Q ss_pred Cc
Q psy933 167 DA 168 (330)
Q Consensus 167 g~ 168 (330)
+|
T Consensus 407 ~N 408 (569)
T PRK10789 407 NN 408 (569)
T ss_pred HH
Confidence 55
No 175
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.08 E-value=0.0013 Score=53.54 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHhhC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~ 117 (330)
|+|.||+|+|||++++.|++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999999875
No 176
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.08 E-value=0.0062 Score=58.58 Aligned_cols=55 Identities=25% Similarity=0.362 Sum_probs=44.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
-.++|+|++.||||||+++|....++ ...-++||..|-+| |-+|....+++..-+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~se--va~y~FTTl~~VPG~l~Y~ga~IQild~Pgi 120 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSE--VADYPFTTLEPVPGMLEYKGAQIQLLDLPGI 120 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCcc--ccccCceecccccceEeecCceEEEEcCccc
Confidence 37999999999999999999988775 45567899999888 557777777765543
No 177
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.07 E-value=0.0056 Score=61.86 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=38.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEeccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHD 148 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~ 148 (330)
-.|+|+|++|||||||.++|..... .+....+.|||..-.. ..+|..+.++|..
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~ 271 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTA 271 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCC
Confidence 4799999999999999999987532 2456678888865433 3356555555544
No 178
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.07 E-value=0.021 Score=47.86 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+++|++|||||||.++|...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999853
No 179
>PRK14526 adenylate kinase; Provisional
Probab=97.07 E-value=0.011 Score=53.67 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=20.7
Q ss_pred EEEEcCCCccHHHHHHHHHhhCC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p 118 (330)
|+|+||+||||||+++.|.+.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999987754
No 180
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.06 E-value=0.00069 Score=62.24 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..+..|+|+||||||||||.+.|.-.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 35689999999999999999977543
No 181
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.05 E-value=0.009 Score=59.61 Aligned_cols=56 Identities=21% Similarity=0.394 Sum_probs=40.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
-.|+|+|.+|+|||||+++|+.... .+....+-|||..... +.+|.+|.+++..-+
T Consensus 174 ~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~ 231 (435)
T PRK00093 174 IKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGI 231 (435)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCC
Confidence 4799999999999999999987643 3456677788865432 246667777765443
No 182
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.04 E-value=0.0092 Score=59.86 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=37.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--C-CeeEEEecc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--N-GRAYYFISH 147 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~-G~dy~fvs~ 147 (330)
-|+|+|.++||||||+++|....|. . ..-|.||+.|-.+-+ + +..+.+++.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-I-a~ypfTTl~PnlG~v~~~~~~~~~laD~ 213 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-I-ANYHFTTLVPNLGVVETDDGRSFVMADI 213 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-c-ccCCcceeceEEEEEEEeCCceEEEEEC
Confidence 5899999999999999999987763 3 346789998866633 2 334444443
No 183
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.04 E-value=0.00047 Score=64.51 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||.|||||||.+.|....+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 468999999999999999999987654
No 184
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.03 E-value=0.0015 Score=55.80 Aligned_cols=50 Identities=26% Similarity=0.292 Sum_probs=34.2
Q ss_pred EEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cC-CeeEEEecccc
Q psy933 98 LLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--EN-GRAYYFISHDE 149 (330)
Q Consensus 98 LvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~-G~dy~fvs~~~ 149 (330)
|+|++|||||||.++|..... .....+.||+.|..+. .+ |..+.+++..-
T Consensus 1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG 53 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPG 53 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccc
Confidence 589999999999999987643 3345567887775542 33 55555555443
No 185
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.02 E-value=0.0034 Score=63.30 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..|+++|++|+||||++..|+....
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLG 280 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 357889999999999999999998764
No 186
>PRK13974 thymidylate kinase; Provisional
Probab=97.02 E-value=0.01 Score=53.60 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
+..|+|.|+.||||||+++.|.+.++.
T Consensus 3 g~~i~~eG~dGsGKsT~~~~l~~~l~~ 29 (212)
T PRK13974 3 GKFIVLEGIDGCGKTTQIDHLSKWLPS 29 (212)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 468999999999999999999988764
No 187
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=97.02 E-value=0.014 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.578 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+++|++|||||||+++|...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~ 23 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999854
No 188
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.01 E-value=0.0086 Score=58.09 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=32.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE 137 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~ 137 (330)
-|+|+|.++||||||.++|....|. ....|.||+.|..+.+
T Consensus 159 dV~lvG~pnaGKSTLl~~lt~~~~~--va~y~fTT~~p~ig~v 199 (329)
T TIGR02729 159 DVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLVPNLGVV 199 (329)
T ss_pred cEEEEcCCCCCHHHHHHHHhcCCcc--ccCCCCCccCCEEEEE
Confidence 5899999999999999999876552 3445789998877643
No 189
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.01 E-value=0.0064 Score=62.14 Aligned_cols=53 Identities=17% Similarity=0.198 Sum_probs=39.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDE 149 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~ 149 (330)
-|+|+|.++||||||+++|....|. ....|.||+.|-.+-+ .+..|.+++..-
T Consensus 161 dV~LVG~PNAGKSTLln~Ls~akpk--IadypfTTl~P~lGvv~~~~~~f~laDtPG 215 (500)
T PRK12296 161 DVGLVGFPSAGKSSLISALSAAKPK--IADYPFTTLVPNLGVVQAGDTRFTVADVPG 215 (500)
T ss_pred eEEEEEcCCCCHHHHHHHHhcCCcc--ccccCcccccceEEEEEECCeEEEEEECCC
Confidence 5899999999999999999887663 2456889999877744 344455555443
No 190
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=96.99 E-value=0.022 Score=51.54 Aligned_cols=54 Identities=24% Similarity=0.383 Sum_probs=33.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCcccc---ccccccC-CCCcccCCeeEEEecccch
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYP---VPHTTRS-PRSDEENGRAYYFISHDEM 150 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~---v~~TTR~-pr~~E~~G~dy~fvs~~~f 150 (330)
.|+|+|++|+|||++.|.|+... .|... -+.|+.. ...++.+|....+|+...|
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~--~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl 59 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKE--VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGL 59 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS---SS--TTTSS--SS-EEEEEEETTEEEEEEE--SS
T ss_pred EEEEECCCCCCHHHHHHHHhccc--ceeeccccCCcccccceeeeeecceEEEEEeCCCC
Confidence 48999999999999999998654 24333 1233222 1234678888888876654
No 191
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.99 E-value=0.00075 Score=65.53 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||||||||||.+.++-..
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999999887554
No 192
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.99 E-value=0.00069 Score=58.06 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP 132 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p 132 (330)
+..|+++|+||||||||.|.|..... .-...+|-|||..
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~-~~~~~~~g~T~~~ 140 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV-CKVAPIPGETKVW 140 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc-eeeCCCCCeeEeE
Confidence 34678999999999999999986532 2455677777753
No 193
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.99 E-value=0.0006 Score=55.33 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHHhhC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~ 117 (330)
|+|.|++|||||||++.|.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999885
No 194
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0073 Score=57.57 Aligned_cols=176 Identities=15% Similarity=0.182 Sum_probs=100.2
Q ss_pred CceeeecccCC--CCCEEEEEcCCCccHHHHHHHHHhhCCCC-c-ccccccc-ccCCCCcccCCeeEEEecccchhhHH-
Q psy933 81 TYEEVVKLPSF--KRKTLVLLGAHGVGRRHIKNTLINKFPDK-Y-AYPVPHT-TRSPRSDEENGRAYYFISHDEMMSDI- 154 (330)
Q Consensus 81 ~Ye~V~~~~~~--~~r~ivLvGpsGvGKstL~~~L~~~~p~~-f-~~~v~~T-TR~pr~~E~~G~dy~fvs~~~f~~~i- 154 (330)
.++-+..+.|. +...|.|.|++|+|||||...|..++-+. . ..++... |.|..-|-+= =++--|.+..
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL------GDRiRM~~~~~ 110 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL------GDRIRMQRLAV 110 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc------ccHhhHHhhcc
Confidence 34444444333 33478999999999999999999876431 1 1111111 1111122211 1455566655
Q ss_pred hccceeeEEeecCccccccHHHHHHHH---HhCCeEEEEeCHHHHHHH--HhcCCCCEEEEEccCccccccCchHHHHHH
Q psy933 155 AANQYLEYGTHEDAMYGTKLETIRRIH---QEGKIAILDVEPQALKIL--RTGEFSPFVVFIAAPQLQNLSDYDGSLEKL 229 (330)
Q Consensus 155 ~~~~fle~~~~~g~~YGts~~~i~~v~---~~gk~~vldv~~~~v~~L--~~~~~~p~vIfI~pps~~~l~~~~e~~~rl 229 (330)
..|-|+-.---.|.+=|.|..+-+-+. +.|...| .++.-|+-+- --...--.++++..|.. -++++-+
T Consensus 111 ~~~vFiRs~~srG~lGGlS~at~~~i~~ldAaG~DvI-IVETVGvGQsev~I~~~aDt~~~v~~pg~------GD~~Q~i 183 (323)
T COG1703 111 DPGVFIRSSPSRGTLGGLSRATREAIKLLDAAGYDVI-IVETVGVGQSEVDIANMADTFLVVMIPGA------GDDLQGI 183 (323)
T ss_pred CCCeEEeecCCCccchhhhHHHHHHHHHHHhcCCCEE-EEEecCCCcchhHHhhhcceEEEEecCCC------CcHHHHH
Confidence 678888887777888888876544322 3465544 3444343221 11233456677777743 1233322
Q ss_pred HHHHHHHHhhccccceEEEecC----CHHHHHHHHHHHHHHh---cCCCccccc
Q psy933 230 AKESDILKSAYEHFFDLTVVNN----DIEETIGILEKAIEEL---HTTPQWIPV 276 (330)
Q Consensus 230 ~~~~~~ie~~~~~~fD~vI~N~----dle~a~~~L~~~i~~~---~~~~~WvP~ 276 (330)
. .-.| ..-|.+++|. +-+.|+..|..+++.. ..++-|-|-
T Consensus 184 K--~Gim-----EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~pp 230 (323)
T COG1703 184 K--AGIM-----EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPP 230 (323)
T ss_pred H--hhhh-----hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCc
Confidence 2 1222 3468888885 4556688888888777 567888873
No 195
>PRK15494 era GTPase Era; Provisional
Probab=96.97 E-value=0.015 Score=56.67 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=33.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH 147 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~ 147 (330)
.|+|+|.+|||||||+++|+...- ....+-+.|||..-.+ ..+|....|+|.
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DT 107 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDT 107 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEEC
Confidence 789999999999999999986421 1123456788754333 223444444443
No 196
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.96 E-value=0.0022 Score=66.47 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
+.+|.|.||||||||||++.|+...|.
T Consensus 65 riIIGIaGpSGSGKTTLAk~LaglLp~ 91 (656)
T PLN02318 65 IILVGVAGPSGAGKTVFTEKVLNFMPS 91 (656)
T ss_pred eEEEEEECCCCCcHHHHHHHHHhhCCC
Confidence 458899999999999999999988763
No 197
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.96 E-value=0.0008 Score=71.28 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
.+..++|+||||+|||||++.|...++ |..|+ .||.+..-++.+.+.+.+ .++.++..++..
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~-------------p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYT-------------PQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC-------------CCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 567999999999999999999987764 34454 488877777766665543 356666666666
Q ss_pred Cc
Q psy933 167 DA 168 (330)
Q Consensus 167 g~ 168 (330)
+|
T Consensus 549 eN 550 (694)
T TIGR01846 549 DN 550 (694)
T ss_pred HH
Confidence 66
No 198
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=96.95 E-value=0.001 Score=56.99 Aligned_cols=43 Identities=33% Similarity=0.394 Sum_probs=33.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE 136 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E 136 (330)
...++|+|.+|+|||||.+.|....... ....++|||.+....
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~-~~~~~~~t~~~~~~~ 142 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLK-VGNVPGTTTSQQEVK 142 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHcccccc-ccCCCCcccceEEEE
Confidence 4679999999999999999999765321 345689999875543
No 199
>PRK08118 topology modulation protein; Reviewed
Probab=96.93 E-value=0.00074 Score=59.02 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
-|+|+||+|||||||+++|.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998753
No 200
>PLN03232 ABC transporter C family member; Provisional
Probab=96.92 E-value=0.00087 Score=76.85 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
.+..|+|+||||+|||||++.|.+.++ |..|++ ||+|..-++.+.+.+.+ .++.++..|+..
T Consensus 1261 ~GekvaIVG~SGSGKSTL~~lL~rl~~-------------p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr 1327 (1495)
T PLN03232 1261 PSEKVGVVGRTGAGKSSMLNALFRIVE-------------LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVR 1327 (1495)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-------------CCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHH
Confidence 567999999999999999999987654 455654 99998888877776644 588899888888
Q ss_pred Ccc-cc--ccHHHHHHHHH
Q psy933 167 DAM-YG--TKLETIRRIHQ 182 (330)
Q Consensus 167 g~~-YG--ts~~~i~~v~~ 182 (330)
.|. +| .+.+.|.++++
T Consensus 1328 ~NL~~~~~~sdeei~~al~ 1346 (1495)
T PLN03232 1328 FNIDPFSEHNDADLWEALE 1346 (1495)
T ss_pred HHcCCCCCCCHHHHHHHHH
Confidence 774 43 24455555554
No 201
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.91 E-value=0.0043 Score=49.84 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEcCCCccHHHHHHHHHhhCC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p 118 (330)
|+++|++|||||||+++|+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999997653
No 202
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=96.91 E-value=0.0058 Score=62.42 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|++|+||||+++.|.+..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~l 24 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVL 24 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 203
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.0077 Score=53.37 Aligned_cols=154 Identities=18% Similarity=0.282 Sum_probs=79.2
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc-eeeEEeecCc
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ-YLEYGTHEDA 168 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~-fle~~~~~g~ 168 (330)
..++.+|=|.|.||+|||||++.|.+..-. .|..-+.++-+.....+..+. |-+-... .|
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~------------------~G~~~y~LDGDnvR~gL~~dLgFs~edR~-en 80 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFA------------------KGYHVYLLDGDNVRHGLNRDLGFSREDRI-EN 80 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHH------------------cCCeEEEecChhHhhcccCCCCCChHHHH-HH
Confidence 444568899999999999999999876532 233334444444433322221 1100000 00
Q ss_pred cccccHHHHHHHH-HhCCeEEE-EeCHHH-HH-HHHhcCC--CCEEEEEccCccccccCchHHHHHHHHHHHH--H----
Q psy933 169 MYGTKLETIRRIH-QEGKIAIL-DVEPQA-LK-ILRTGEF--SPFVVFIAAPQLQNLSDYDGSLEKLAKESDI--L---- 236 (330)
Q Consensus 169 ~YGts~~~i~~v~-~~gk~~vl-dv~~~~-v~-~L~~~~~--~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~--i---- 236 (330)
. .....|-+.+ ++|-++|+ -++|-. .+ +.|..-. .-+=|||..| +++.... +-+-|++.+.. |
T Consensus 81 i--RRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~p-l~vce~R--DpKGLYkKAr~GeI~~fT 155 (197)
T COG0529 81 I--RRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTP-LEVCERR--DPKGLYKKARAGEIKNFT 155 (197)
T ss_pred H--HHHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCC-HHHHHhc--CchHHHHHHHcCCCCCCc
Confidence 0 0112222323 45666654 566633 23 3333211 2456999987 2222111 11336654432 1
Q ss_pred --Hhhc--cccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933 237 --KSAY--EHFFDLTVVNN--DIEETIGILEKAIEEL 267 (330)
Q Consensus 237 --e~~~--~~~fD~vI~N~--dle~a~~~L~~~i~~~ 267 (330)
...| +...|.+|..+ ++++.+++|..++...
T Consensus 156 Gid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l~~~ 192 (197)
T COG0529 156 GIDSPYEAPENPELHLDTDRNSVEECVEQILDLLKER 192 (197)
T ss_pred CCCCCCCCCCCCeeEeccccCCHHHHHHHHHHHHHhc
Confidence 1223 34567777754 8999999998887643
No 204
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=96.89 E-value=0.0012 Score=57.52 Aligned_cols=29 Identities=28% Similarity=0.501 Sum_probs=24.2
Q ss_pred ccCCCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 88 LPSFKRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
+|.....-|+|+|++|+|||||.++|...
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 44455568999999999999999999865
No 205
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.88 E-value=0.00082 Score=61.29 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||||||||||.+.|....
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCc
Confidence 56799999999999999999886543
No 206
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.88 E-value=0.0011 Score=53.16 Aligned_cols=27 Identities=15% Similarity=0.461 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
++.++|+||+|+||||+++.|+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 468999999999999999999987654
No 207
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.88 E-value=0.0066 Score=53.70 Aligned_cols=28 Identities=29% Similarity=0.604 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
.+..++|+||+|+||||+++.|+...|.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4578999999999999999999987663
No 208
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=96.88 E-value=0.0012 Score=57.88 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=26.1
Q ss_pred eecccCCCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 85 VVKLPSFKRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 85 V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
+..+++...+-|+|+|++|||||||+++|...
T Consensus 16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 44455556678999999999999999999864
No 209
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.88 E-value=0.0012 Score=58.99 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~ 115 (330)
.+..++|+||||+|||||.+.++-
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHh
Confidence 467999999999999999996653
No 210
>PRK09087 hypothetical protein; Validated
Probab=96.88 E-value=0.00078 Score=61.83 Aligned_cols=113 Identities=21% Similarity=0.238 Sum_probs=59.3
Q ss_pred ceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHH----hcc
Q psy933 82 YEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDI----AAN 157 (330)
Q Consensus 82 Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i----~~~ 157 (330)
|.-+.+.+.-..++++|.||+|+|||+|++.+.+...-. +++...|...+ ..+
T Consensus 33 ~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~-----------------------~i~~~~~~~~~~~~~~~~ 89 (226)
T PRK09087 33 VSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSDAL-----------------------LIHPNEIGSDAANAAAEG 89 (226)
T ss_pred HHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcCCE-----------------------EecHHHcchHHHHhhhcC
Confidence 443444343335679999999999999999777543211 22221111111 111
Q ss_pred ceeeEEeecCc--cccccHHHHHHHHHhCCeEEEEeC--HHH----HHHHHhcCCCCEEEEEccCcccc
Q psy933 158 QYLEYGTHEDA--MYGTKLETIRRIHQEGKIAILDVE--PQA----LKILRTGEFSPFVVFIAAPQLQN 218 (330)
Q Consensus 158 ~fle~~~~~g~--~YGts~~~i~~v~~~gk~~vldv~--~~~----v~~L~~~~~~p~vIfI~pps~~~ 218 (330)
.+-....+.. --..-..-+..+.+.|+..|+..+ |.. ...|+..--...++-|.||+.+.
T Consensus 90 -~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~ 157 (226)
T PRK09087 90 -PVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL 157 (226)
T ss_pred -eEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHH
Confidence 1111111000 001113344455567888777665 332 35577666678889999997543
No 211
>PLN02674 adenylate kinase
Probab=96.87 E-value=0.011 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..|+|+||+||||+|++.+|++.+.
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998763
No 212
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.87 E-value=0.0011 Score=68.32 Aligned_cols=64 Identities=17% Similarity=0.346 Sum_probs=41.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
++..++|+||||+|||||.+.|...++ |..|+ .+|.+..-++.+.+.+. +.++.++..++..
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~ 409 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWP-------------PTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVA 409 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHH
Confidence 568999999999999999999987764 33343 36666554444443332 2344555555555
Q ss_pred Cc
Q psy933 167 DA 168 (330)
Q Consensus 167 g~ 168 (330)
+|
T Consensus 410 ~N 411 (544)
T TIGR01842 410 EN 411 (544)
T ss_pred HH
Confidence 55
No 213
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.87 E-value=0.00076 Score=64.07 Aligned_cols=41 Identities=32% Similarity=0.420 Sum_probs=29.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccc-------cccccCCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV-------PHTTRSPRS 134 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v-------~~TTR~pr~ 134 (330)
++.++|+|+||||||||++.|+...... ...+ .|||+....
T Consensus 161 ~k~~~~~G~sg~GKSTlin~l~~~~~~~-~g~v~~~~~~g~~tT~~~~~ 208 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLA-TGEISEKLGRGRHTTTHREL 208 (287)
T ss_pred cceEEEECCCCCCHHHHHHHHhchhhcc-ccceeccCCCCCcccceEEE
Confidence 4789999999999999999998764322 2223 367876533
No 214
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0069 Score=55.07 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=33.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD 135 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~ 135 (330)
++..|+|=|.-||||||+++.|.+.+..... -..+||.|.-+
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~--~v~~trEP~~~ 43 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI--KVVLTREPGGT 43 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEeCCCCC
Confidence 3578999999999999999999988765322 34678988763
No 215
>PRK12289 GTPase RsgA; Reviewed
Probab=96.85 E-value=0.00097 Score=65.27 Aligned_cols=44 Identities=34% Similarity=0.353 Sum_probs=32.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc-------ccccCCCCccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP-------HTTRSPRSDEE 137 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~-------~TTR~pr~~E~ 137 (330)
.++++|+|+||||||||+|.|+.... .-...++ ||||....-+.
T Consensus 172 ~ki~v~iG~SgVGKSSLIN~L~~~~~-~~t~~vs~~~~rGrHTT~~~~l~~l 222 (352)
T PRK12289 172 NKITVVAGPSGVGKSSLINRLIPDVE-LRVGKVSGKLGRGRHTTRHVELFEL 222 (352)
T ss_pred cceEEEEeCCCCCHHHHHHHHcCccc-cccccccCCCCCCCCcCceeEEEEC
Confidence 46799999999999999999986532 2234455 58987655444
No 216
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.85 E-value=0.0024 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.++.++|+||+|+|||+|++.+.....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 347899999999999999999998763
No 217
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.84 E-value=0.00085 Score=69.10 Aligned_cols=27 Identities=22% Similarity=0.503 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++..++|+||||+|||||++.|...++
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999987664
No 218
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=96.84 E-value=0.023 Score=55.31 Aligned_cols=40 Identities=20% Similarity=0.281 Sum_probs=32.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE 136 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E 136 (330)
-|+|+|.++||||||+++|....|. ....|.||+.|-.+-
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~--va~ypfTT~~p~~G~ 199 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK--IADYPFTTLHPNLGV 199 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc--cCCCCCceeCceEEE
Confidence 4899999999999999999876653 345678999987663
No 219
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=96.83 E-value=0.0011 Score=68.90 Aligned_cols=64 Identities=14% Similarity=0.288 Sum_probs=40.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
.+..++|+||||+|||||.+.|...++ |..|+ .+|.+..-++.+.+.+. +.++.++..++..
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 426 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYD-------------PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIR 426 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCC-------------CCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHH
Confidence 568999999999999999998887654 33443 36665554444443332 2244445445555
Q ss_pred Cc
Q psy933 167 DA 168 (330)
Q Consensus 167 g~ 168 (330)
+|
T Consensus 427 ~N 428 (585)
T TIGR01192 427 EN 428 (585)
T ss_pred HH
Confidence 55
No 220
>KOG0055|consensus
Probab=96.83 E-value=0.00057 Score=75.29 Aligned_cols=77 Identities=22% Similarity=0.302 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhh---HHhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMS---DIAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~---~i~~~~fle~~~~~ 166 (330)
.+..+.|+|||||||||+...|.+.+. |..|++ ||.|-.-+....... .+.+...+.-++..
T Consensus 378 ~G~~valVG~SGsGKST~i~LL~Rfyd-------------P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~ 444 (1228)
T KOG0055|consen 378 SGQTVALVGPSGSGKSTLIQLLARFYD-------------PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIR 444 (1228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-------------CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHH
Confidence 457999999999999999997766543 556664 787766655555444 23455566667777
Q ss_pred Cc-cccc---cHHHHHHHH
Q psy933 167 DA-MYGT---KLETIRRIH 181 (330)
Q Consensus 167 g~-~YGt---s~~~i~~v~ 181 (330)
.| .||. +.+.|.++.
T Consensus 445 eNI~~G~~dat~~~i~~a~ 463 (1228)
T KOG0055|consen 445 ENIRYGKPDATREEIEEAA 463 (1228)
T ss_pred HHHhcCCCcccHHHHHHHH
Confidence 77 7997 445555544
No 221
>PLN03130 ABC transporter C family member; Provisional
Probab=96.82 E-value=0.0012 Score=76.23 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=59.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
.+..|+|+|+||+|||||++.|.+.++ |..|+ +||+|..-++...+.+. +.++.++..|+..
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIr 1330 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVE-------------LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCC-------------CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHH
Confidence 567999999999999999999987654 44555 49999888888777764 4588899899888
Q ss_pred Ccc-cc--ccHHHHHHHHHh
Q psy933 167 DAM-YG--TKLETIRRIHQE 183 (330)
Q Consensus 167 g~~-YG--ts~~~i~~v~~~ 183 (330)
.|. || .+.+.|.++++.
T Consensus 1331 eNLd~~~~~tdeei~~Al~~ 1350 (1622)
T PLN03130 1331 FNLDPFNEHNDADLWESLER 1350 (1622)
T ss_pred HHhCcCCCCCHHHHHHHHHH
Confidence 774 44 344566666653
No 222
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.80 E-value=0.0011 Score=58.53 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=30.4
Q ss_pred chhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHh
Q psy933 282 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL 317 (330)
Q Consensus 282 ~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~ 317 (330)
.+.+++..| |+||.+|+|+|+++||++|+++|+..
T Consensus 149 ~a~~~~~~~-~~fd~~I~n~~l~~~~~~l~~~i~~~ 183 (184)
T smart00072 149 AAQKEAQEY-HLFDYVIVNDDLEDAYEELKEILEAE 183 (184)
T ss_pred HHHHHHhhh-ccCCEEEECcCHHHHHHHHHHHHHhc
Confidence 466666677 99999999999999999999999764
No 223
>COG1084 Predicted GTPase [General function prediction only]
Probab=96.79 E-value=0.013 Score=56.53 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=33.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD 135 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~ 135 (330)
.-++||++|+++||||||.+.|....|+ ..+=|.||+.---|
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpE--vA~YPFTTK~i~vG 208 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPE--VAPYPFTTKGIHVG 208 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCc--cCCCCccccceeEe
Confidence 3579999999999999999999998886 34456788765444
No 224
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=96.79 E-value=0.00073 Score=46.58 Aligned_cols=28 Identities=32% Similarity=1.012 Sum_probs=24.3
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCC
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS 29 (330)
+|+|+++.|.+||.++..+. +..|+|||
T Consensus 21 ~i~v~~~~~~~Ww~~~~~~~-~~~G~vP~ 48 (48)
T PF00018_consen 21 IIEVLEKSDDGWWKVRNEST-GKEGWVPS 48 (48)
T ss_dssp EEEEEEESSSSEEEEEETTT-TEEEEEEG
T ss_pred EEEEEEecCCCEEEEEECCC-CcEEEeeC
Confidence 47899999999999998643 88999996
No 225
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=96.79 E-value=0.018 Score=51.74 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
+.|+|+||+|||||+|.++|...
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~ 23 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTG 23 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 226
>KOG1489|consensus
Probab=96.78 E-value=0.019 Score=55.13 Aligned_cols=143 Identities=20% Similarity=0.245 Sum_probs=80.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccccH
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKL 174 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~ 174 (330)
-|.|+|-+.+|||||.+.|...-|. ...=+.||=.|.-|- |..++|.+ +-.+..-|-.-|-+.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpk--Va~YaFTTL~P~iG~--------v~yddf~q-------~tVADiPGiI~GAh~ 260 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPK--VAHYAFTTLRPHIGT--------VNYDDFSQ-------ITVADIPGIIEGAHM 260 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCc--ccccceeeeccccce--------eeccccce-------eEeccCccccccccc
Confidence 4779999999999999999988873 233457888777662 33333322 111111111111110
Q ss_pred HHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhccccceEEEecC-CH
Q psy933 175 ETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNN-DI 253 (330)
Q Consensus 175 ~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dl 253 (330)
.+| -|.+-||-.+-.-..+||---|-..++...+.++-|..+.+..+.....-.-.++.|- |+
T Consensus 261 -------nkG---------lG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~ 324 (366)
T KOG1489|consen 261 -------NKG---------LGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDL 324 (366)
T ss_pred -------cCc---------ccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCc
Confidence 111 1233333322222233333222223344556777777777777766666777888887 88
Q ss_pred HHHHHHH-HHHHHHhcCC
Q psy933 254 EETIGIL-EKAIEELHTT 270 (330)
Q Consensus 254 e~a~~~L-~~~i~~~~~~ 270 (330)
.++-+.+ .++..++++.
T Consensus 325 ~eae~~~l~~L~~~lq~~ 342 (366)
T KOG1489|consen 325 PEAEKNLLSSLAKRLQNP 342 (366)
T ss_pred hhHHHHHHHHHHHHcCCC
Confidence 5666555 7777777654
No 227
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.78 E-value=0.0015 Score=61.09 Aligned_cols=146 Identities=20% Similarity=0.330 Sum_probs=76.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhHH-----hccceeeEEe
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSDI-----AANQYLEYGT 164 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~i-----~~~~fle~~~ 164 (330)
.+-.+||+|||||||||+.+.+.+... |..|++ +|.+..-.+.-++.+.| +.|.|-...
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLie-------------pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~T- 91 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIE-------------PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLT- 91 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccC-------------CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCcc-
Confidence 457899999999999999886654432 445543 77766555555555532 244454333
Q ss_pred ecC------ccccccHHHHHHHHHhCCeEEEEeCHHH----------------HHHHHhcCCCCEEEEEccCccccccCc
Q psy933 165 HED------AMYGTKLETIRRIHQEGKIAILDVEPQA----------------LKILRTGEFSPFVVFIAAPQLQNLSDY 222 (330)
Q Consensus 165 ~~g------~~YGts~~~i~~v~~~gk~~vldv~~~~----------------v~~L~~~~~~p~vIfI~pps~~~l~~~ 222 (330)
... ++-|-+++.+++-+.+ -.-++.++|.- +-.+|..--.|-++...-|- ..|
T Consensus 92 v~eNIa~VP~L~~w~k~~i~~r~~E-Ll~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPF-gAL--- 166 (309)
T COG1125 92 VAENIATVPKLLGWDKERIKKRADE-LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPF-GAL--- 166 (309)
T ss_pred HHHHHHhhhhhcCCCHHHHHHHHHH-HHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCc-ccc---
Confidence 222 2445566655544322 11244555531 11233333467777776551 111
Q ss_pred hHHH-HHHHHHHHHHHhhccccceEEEecCCHHHHHH
Q psy933 223 DGSL-EKLAKESDILKSAYEHFFDLTVVNNDIEETIG 258 (330)
Q Consensus 223 ~e~~-~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~ 258 (330)
|--. .++.++...+.+..+ -..|.|..|+++|+.
T Consensus 167 DpI~R~~lQ~e~~~lq~~l~--kTivfVTHDidEA~k 201 (309)
T COG1125 167 DPITRKQLQEEIKELQKELG--KTIVFVTHDIDEALK 201 (309)
T ss_pred ChhhHHHHHHHHHHHHHHhC--CEEEEEecCHHHHHh
Confidence 1000 123333333333322 355667778887764
No 228
>KOG0708|consensus
Probab=96.75 E-value=0.0014 Score=63.58 Aligned_cols=51 Identities=22% Similarity=0.458 Sum_probs=48.3
Q ss_pred cccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCceeecc
Q psy933 277 SWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS 327 (330)
Q Consensus 277 sw~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWvp~~ 327 (330)
.-+++.++++|+.|+.||..+|..++++.+|.+++.+|++-|....|||++
T Consensus 309 ke~~e~a~klEqe~~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~iWVp~~ 359 (359)
T KOG0708|consen 309 KELLERARKLEQELDRYFTLVVQGGSLEELLSQVKDIIEDEQKKVIWVPAK 359 (359)
T ss_pred HHHHHHHHHhHhhhhhceEEEEecccHHHHHHHHHHHHHHhhCCeEeeeCC
Confidence 356889999999999999999999999999999999999999999999974
No 229
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.75 E-value=0.0068 Score=51.83 Aligned_cols=24 Identities=21% Similarity=0.475 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
...|+|+||+|||||||.++|...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 356999999999999999999864
No 230
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.75 E-value=0.026 Score=47.43 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHhh
Q psy933 96 LVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~ 116 (330)
|+++|++|||||||+++|...
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999854
No 231
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=96.74 E-value=0.0013 Score=67.86 Aligned_cols=28 Identities=11% Similarity=0.375 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||||+|||||.+.|...++
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~ 393 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGLYI 393 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3568999999999999999999987654
No 232
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.74 E-value=0.0012 Score=58.17 Aligned_cols=121 Identities=17% Similarity=0.200 Sum_probs=68.8
Q ss_pred cccccHHHHHHHHHhCCeEEE--------EeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhc
Q psy933 169 MYGTKLETIRRIHQEGKIAIL--------DVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAY 240 (330)
Q Consensus 169 ~YGts~~~i~~v~~~gk~~vl--------dv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~ 240 (330)
+|=.+.+...+.+++|..+-. -+...++..+-..+.. .++-+.|... ..+...
T Consensus 51 y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt~~~~i~~~~~~gk~-~il~~~~~g~-----------------~~L~~~- 111 (183)
T PF00625_consen 51 YHFVSKEEFERMIKAGEFIEYGEYDGNYYGTSKSAIDKVLEEGKH-CILDVDPEGV-----------------KQLKKA- 111 (183)
T ss_dssp EEE--HHHHHHHHHTTHEEEEEEETTEEEEEEHHHHHHHHHTTTE-EEEEETHHHH-----------------HHHHHC-
T ss_pred eEEEeechhhhhhccccEEEEeeecchhhhhccchhhHhhhcCCc-EEEEccHHHH-----------------HHHHhc-
Confidence 566788888888877765432 2344556665554443 2222332211 122111
Q ss_pred cccceEEEe-cCCHHHHHHHHHHHHHHhcCCCccccccccccchhhhhhhccce--eeEEEEcCCHHHHHHHHHHHHHH
Q psy933 241 EHFFDLTVV-NNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHF--FDLTVVNNDIEETIGILEKAIEE 316 (330)
Q Consensus 241 ~~~fD~vI~-N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~~~~~~~e~~y~h~--fd~~ivn~~~~~~~~~l~~~~~~ 316 (330)
....-.|.+ -.+.+..-+.| .+...+ ...-+.+....++..|+|+ ||.||+|+||+.|+.+|+++|++
T Consensus 112 ~~~~~~IfI~~~s~~~l~~~l----~~r~~~----~~~~i~~r~~~~~~~~~~~~~fd~vi~n~~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 112 GFNPIVIFIKPPSPEVLKRRL----RRRGDE----SEEEIEERLERAEKEFEHYNEFDYVIVNDDLEEAVKELKEIIEQ 182 (183)
T ss_dssp TTTEEEEEEEESSHHHHHHHH----HTTTHC----HHHHHHHHHHHHHHHHGGGGGSSEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEEccchHHHHHHH----hccccc----cHHHHHHHHHHHHHHHhHhhcCCEEEECcCHHHHHHHHHHHHHh
Confidence 222223332 23444433332 221111 1124567788889999999 99999999999999999999975
No 233
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.73 E-value=0.0018 Score=59.85 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=38.9
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhh
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMS 152 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~ 152 (330)
..++..++|+||||+|||||.+.+.-..+ |..||+ +|.++.-+|.++..+
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~-------------P~~GeI~i~G~~i~~ls~~~~~~ 82 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLLR-------------PDKGEILIDGEDIPQLSEEELYE 82 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccCC-------------CCCCeEEEcCcchhccCHHHHHH
Confidence 34678999999999999999998876543 666754 888888888766443
No 234
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=96.72 E-value=0.079 Score=45.19 Aligned_cols=22 Identities=32% Similarity=0.721 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|.+|||||+|.++|...
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~ 23 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSE 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 235
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.70 E-value=0.011 Score=55.38 Aligned_cols=163 Identities=16% Similarity=0.240 Sum_probs=84.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCC-cc-cccccc-ccCCCCcccCCeeEEEecccchhhHH-hccceeeEEeecCc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDK-YA-YPVPHT-TRSPRSDEENGRAYYFISHDEMMSDI-AANQYLEYGTHEDA 168 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~-f~-~~v~~T-TR~pr~~E~~G~dy~fvs~~~f~~~i-~~~~fle~~~~~g~ 168 (330)
...|.|.||+|+|||||...|...+... .. .++... |.|-.-|-+=| ++--|.+.. +.+-|+-.---.|+
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG------DRiRM~~~~~d~~vfIRS~atRG~ 102 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG------DRIRMQELSRDPGVFIRSMATRGS 102 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--------GGGCHHHHTSTTEEEEEE---SS
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc------cHHHhcCcCCCCCEEEeecCcCCC
Confidence 3589999999999999999998876421 11 111111 11111111111 555666653 57889988888888
Q ss_pred cccccHHHHHH--HH-HhCCeEEEEeCH-HHHHHHHhcCCCCEEEEEccCcc-ccccCchHHHHHHHHHHHHHHhhcccc
Q psy933 169 MYGTKLETIRR--IH-QEGKIAILDVEP-QALKILRTGEFSPFVVFIAAPQL-QNLSDYDGSLEKLAKESDILKSAYEHF 243 (330)
Q Consensus 169 ~YGts~~~i~~--v~-~~gk~~vldv~~-~~v~~L~~~~~~p~vIfI~pps~-~~l~~~~e~~~rl~~~~~~ie~~~~~~ 243 (330)
+=|.+...-+. ++ +.|...|+.=+. -|-..+--...--.++++.+|.. ++++-.. +-.| ..
T Consensus 103 lGGls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~K---------aGim-----Ei 168 (266)
T PF03308_consen 103 LGGLSRATRDAVRLLDAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIK---------AGIM-----EI 168 (266)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB----------TTHH-----HH
T ss_pred CCCccHhHHHHHHHHHHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHh---------hhhh-----hh
Confidence 87876544332 23 356665543221 12222333455666777777743 3443211 1112 23
Q ss_pred ceEEEecC-C---HHHHHHHHHHHHHHhcC-CCcccc
Q psy933 244 FDLTVVNN-D---IEETIGILEKAIEELHT-TPQWIP 275 (330)
Q Consensus 244 fD~vI~N~-d---le~a~~~L~~~i~~~~~-~~~WvP 275 (330)
.|.+++|- | -+.++.+|...+..... ...|-|
T Consensus 169 aDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~p 205 (266)
T PF03308_consen 169 ADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRP 205 (266)
T ss_dssp -SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--
T ss_pred ccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCC
Confidence 68888886 4 45567777777776544 566876
No 236
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=96.69 E-value=0.0021 Score=53.46 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=25.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS 131 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~ 131 (330)
.|+|+|++|+|||||.++|..... .+....+-||+.
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~ 38 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDR-AIVSDIAGTTRD 38 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCce-EeccCCCCCccc
Confidence 589999999999999999986531 233334455544
No 237
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.69 E-value=0.0019 Score=74.26 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
.+..|+|+|+||+|||||++.|.+.++ |..|+ +||+|..-++.+.+.+.+ .++.++..|+..
T Consensus 1311 ~GekiaIVGrTGsGKSTL~~lL~rl~~-------------~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr 1377 (1522)
T TIGR00957 1311 GGEKVGIVGRTGAGKSSLTLGLFRINE-------------SAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLR 1377 (1522)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcc-------------CCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHH
Confidence 567999999999999999999987654 34554 499999888888877644 588899888888
Q ss_pred Ccc--cc-ccHHHHHHHHHh
Q psy933 167 DAM--YG-TKLETIRRIHQE 183 (330)
Q Consensus 167 g~~--YG-ts~~~i~~v~~~ 183 (330)
.|. || .+.+.|.++++.
T Consensus 1378 ~NLdp~~~~sdeei~~al~~ 1397 (1522)
T TIGR00957 1378 MNLDPFSQYSDEEVWWALEL 1397 (1522)
T ss_pred HHcCcccCCCHHHHHHHHHH
Confidence 885 44 345556655543
No 238
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.69 E-value=0.024 Score=55.09 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
...|.|+||+|+|||||.+.|+..+.
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999887754
No 239
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.67 E-value=0.013 Score=62.50 Aligned_cols=57 Identities=25% Similarity=0.433 Sum_probs=43.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
.+.|+|+|.+|||||||+++|+.... .+....+.|||.+-.. +.+|..|.+++..-+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~ 508 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGI 508 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCc
Confidence 36799999999999999999987643 2455678899987544 457777777766543
No 240
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0025 Score=58.80 Aligned_cols=26 Identities=15% Similarity=0.423 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+-.|+|+||||+|||||.+.|....
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lngl~ 54 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNGLV 54 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccc
Confidence 45799999999999999999887643
No 241
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.64 E-value=0.066 Score=45.92 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.8
Q ss_pred EEEEcCCCccHHHHHHHHHhhCC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p 118 (330)
|+|+|.+|+|||||.+.|.....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999987754
No 242
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.64 E-value=0.0083 Score=49.05 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.3
Q ss_pred EEcCCCccHHHHHHHHHhhCC
Q psy933 98 LLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 98 LvGpsGvGKstL~~~L~~~~p 118 (330)
|+|++|+|||||++.|.....
T Consensus 1 i~G~~gsGKstl~~~l~~~~~ 21 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEV 21 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccc
Confidence 589999999999999987643
No 243
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.63 E-value=0.0016 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLI 114 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~ 114 (330)
.+..++|+||||+|||||++.|.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 35789999999999999999875
No 244
>PRK00093 GTP-binding protein Der; Reviewed
Probab=96.62 E-value=0.0058 Score=61.01 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=39.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
+.|+|+|.+|||||||.++|..... .+....+.+||....+ +.+|..+.+++..-+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~ 59 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGI 59 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCC
Confidence 3689999999999999999986542 2445566778766544 446666777765443
No 245
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.62 E-value=0.0019 Score=54.05 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHh
Q psy933 96 LVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~ 115 (330)
|+|+|++|+|||||.+.|..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999983
No 246
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.60 E-value=0.0015 Score=58.05 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=22.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
+|.|.||||||||||+++|...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 5889999999999999999988763
No 247
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.59 E-value=0.0049 Score=57.51 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
...++|.||+|+|||++++.+.+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999988764
No 248
>PRK06547 hypothetical protein; Provisional
Probab=96.58 E-value=0.0017 Score=57.19 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
......|+|.||+|||||||++.|.+..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3344678888999999999999998874
No 249
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.58 E-value=0.002 Score=58.71 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..+++.+|+|||||||||+.+.|-+.+
T Consensus 31 ~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 31 PKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred cCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 346799999999999999998776554
No 250
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.56 E-value=0.0021 Score=53.66 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+|+|+||+|+|||+|++.|++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh
Confidence 689999999999999999998764
No 251
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.55 E-value=0.002 Score=55.98 Aligned_cols=101 Identities=17% Similarity=0.325 Sum_probs=52.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc-eeeEEeecCcccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ-YLEYGTHEDAMYG 171 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~-fle~~~~~g~~YG 171 (330)
+-.|.|+|.||+|||||++.|.+..- ..|...++++-+.+...+..+. |=... ...|..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~------------------~~g~~~~~LDgD~lR~~l~~dl~fs~~d-R~e~~r- 61 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF------------------ARGIKVYLLDGDNLRHGLNADLGFSKED-REENIR- 61 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH------------------HTTS-EEEEEHHHHCTTTTTT--SSHHH-HHHHHH-
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH------------------HcCCcEEEecCcchhhccCCCCCCCHHH-HHHHHH-
Confidence 34789999999999999999987753 1244456666666554433321 10000 001110
Q ss_pred ccHHHH-HHHHHhCCeEEEEeC-H--HHHHHHHhcCC--CCEEEEEccC
Q psy933 172 TKLETI-RRIHQEGKIAILDVE-P--QALKILRTGEF--SPFVVFIAAP 214 (330)
Q Consensus 172 ts~~~i-~~v~~~gk~~vldv~-~--~~v~~L~~~~~--~p~vIfI~pp 214 (330)
....+ .-..++|-+||+..- | +....+|+... .-+-|||++|
T Consensus 62 -r~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~ 109 (156)
T PF01583_consen 62 -RIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCP 109 (156)
T ss_dssp -HHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-
T ss_pred -HHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCC
Confidence 11122 223467888887543 3 32333443322 3467999986
No 252
>PTZ00301 uridine kinase; Provisional
Probab=96.54 E-value=0.002 Score=58.52 Aligned_cols=24 Identities=17% Similarity=0.522 Sum_probs=20.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+|.|.||||||||||++.|.+..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHH
Confidence 589999999999999999887553
No 253
>PTZ00243 ABC transporter; Provisional
Probab=96.53 E-value=0.0026 Score=73.29 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhHH---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSDI---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~i---~~~~fle~~~~~ 166 (330)
.+..|+|+|+||+|||||++.|+..++ |..|+ +||+|..-++..++.+.+ .++.+|..|+..
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~-------------p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVE-------------VCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 567899999999999999999987664 44554 499998888877777644 478888888777
Q ss_pred Ccc-c--cccHHHHHHHHHh
Q psy933 167 DAM-Y--GTKLETIRRIHQE 183 (330)
Q Consensus 167 g~~-Y--Gts~~~i~~v~~~ 183 (330)
.|. + ..+.+.|.++++.
T Consensus 1402 eNIdp~~~~sdeeI~~Al~~ 1421 (1560)
T PTZ00243 1402 QNVDPFLEASSAEVWAALEL 1421 (1560)
T ss_pred HHhCcccCCCHHHHHHHHHH
Confidence 763 2 1344556666554
No 254
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.53 E-value=0.016 Score=50.74 Aligned_cols=24 Identities=21% Similarity=0.466 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..-|+|+|++|||||||.++|...
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999854
No 255
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.52 E-value=0.0043 Score=54.87 Aligned_cols=27 Identities=15% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 457999999999999999998886543
No 256
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.50 E-value=0.0048 Score=53.89 Aligned_cols=24 Identities=17% Similarity=0.391 Sum_probs=21.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.-|+|+||+|||||||+++|....
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~ 43 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDR 43 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 467999999999999999998643
No 257
>KOG3079|consensus
Probab=96.50 E-value=0.02 Score=50.93 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.++|.++|++||||.|+..++++.|+
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ 33 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYG 33 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcC
Confidence 446888899999999999999999875
No 258
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=96.50 E-value=0.016 Score=57.69 Aligned_cols=53 Identities=25% Similarity=0.387 Sum_probs=40.1
Q ss_pred EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE 149 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~ 149 (330)
|+|+|.+|||||||.++|..... .+....+.+||....+ +.+|..+.++|..-
T Consensus 2 i~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG 56 (429)
T TIGR03594 2 VAIVGRPNVGKSTLFNRLTGKRD-AIVSDTPGVTRDRKYGDAEWGGREFILIDTGG 56 (429)
T ss_pred EEEECCCCCCHHHHHHHHhCCCc-ceecCCCCcccCceEEEEEECCeEEEEEECCC
Confidence 78999999999999999987642 3555677888876555 34677777776544
No 259
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.50 E-value=0.017 Score=51.66 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=22.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
.|+|+||+|+||||+++.|+...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 6899999999999999998887653
No 260
>PRK04213 GTP-binding protein; Provisional
Probab=96.49 E-value=0.004 Score=55.06 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
...|+|+|++|||||||.++|...
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~ 32 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGK 32 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999754
No 261
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.49 E-value=0.055 Score=45.86 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~ 115 (330)
..|+++|++|||||||.++|..
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999999984
No 262
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.47 E-value=0.011 Score=50.80 Aligned_cols=141 Identities=14% Similarity=0.195 Sum_probs=75.1
Q ss_pred EcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccccHHHHH
Q psy933 99 LGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIR 178 (330)
Q Consensus 99 vGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~~~i~ 178 (330)
+|.+||||||+...|++...-.| ++|-++| +++..++| .+|.-|.-....+. ...-.+...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~f---------------idGDdlH--p~aNi~KM-~~GiPL~DdDR~pW-L~~l~~~~~ 61 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKF---------------IDGDDLH--PPANIEKM-SAGIPLNDDDRWPW-LEALGDAAA 61 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCce---------------ecccccC--CHHHHHHH-hCCCCCCcchhhHH-HHHHHHHHH
Confidence 48999999999999999875333 3443433 23333333 33433322111111 112233444
Q ss_pred HHHHhCCeEEEEeCH--HH-HHHHHhcCCCCEEEEEccCccccccCchHHHHHHHH-------------HHHHHHhhccc
Q psy933 179 RIHQEGKIAILDVEP--QA-LKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAK-------------ESDILKSAYEH 242 (330)
Q Consensus 179 ~v~~~gk~~vldv~~--~~-v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~-------------~~~~ie~~~~~ 242 (330)
...+.|++.|+.++. .. -..||.......+||+..+ .+.+ ++||.. +.+.+|.--..
T Consensus 62 ~~~~~~~~~vi~CSALKr~YRD~LR~~~~~~~Fv~L~g~-~~~i------~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~d 134 (161)
T COG3265 62 SLAQKNKHVVIACSALKRSYRDLLREANPGLRFVYLDGD-FDLI------LERMKARKGHFMPASLLDSQFATLEEPGAD 134 (161)
T ss_pred HhhcCCCceEEecHHHHHHHHHHHhccCCCeEEEEecCC-HHHH------HHHHHhcccCCCCHHHHHHHHHHhcCCCCC
Confidence 445678888877763 22 2346666667778888864 3222 233332 22233321122
Q ss_pred cceEE-EecC-CHHHHHHHHHHHHHH
Q psy933 243 FFDLT-VVNN-DIEETIGILEKAIEE 266 (330)
Q Consensus 243 ~fD~v-I~N~-dle~a~~~L~~~i~~ 266 (330)
. |.+ |..+ .+++..++....+..
T Consensus 135 e-~vi~idi~~~~e~vv~~~~~~l~~ 159 (161)
T COG3265 135 E-DVLTIDIDQPPEEVVAQALAWLKE 159 (161)
T ss_pred C-CEEEeeCCCCHHHHHHHHHHHHhc
Confidence 3 444 4445 688888888777653
No 263
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.46 E-value=0.014 Score=50.55 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.++++||+|+||||++..|+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999888764
No 264
>PRK14529 adenylate kinase; Provisional
Probab=96.43 E-value=0.0094 Score=54.76 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=21.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+||+||||+|++++|.+.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~ 25 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD 25 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 388999999999999999998874
No 265
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.42 E-value=0.0056 Score=60.85 Aligned_cols=74 Identities=16% Similarity=0.201 Sum_probs=46.2
Q ss_pred cccceEEEecC-CHHHHHHHHHHHHHHhcC----------------------CCccccccccccchhhhhhhccc-----
Q psy933 241 EHFFDLTVVNN-DIEETIGILEKAIEELHT----------------------TPQWIPVSWLAKESDILKSAYEH----- 292 (330)
Q Consensus 241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~~~----------------------~~~WvP~sw~~~~~~~~e~~y~h----- 292 (330)
....|++|.|+ +++++..++..+++.... .|.|. ....++...|....|.
T Consensus 166 ~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~ydp~W~--~~f~~e~~~l~~~l~~~~~~I 243 (395)
T PRK03333 166 RAVADVWLDNSGTPDELVEAVRALWADRLLPFAHNLRARRRAARAPPRLVPADPSWP--AQAQRIVARLKTAAGHKALRV 243 (395)
T ss_pred HHhCCEEEECCCCHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCceEeCCCCCcH--HHHHHHHHHHHHhcCccceEE
Confidence 45679999998 889999888888755432 13443 2345667777777774
Q ss_pred ---------------eeeEEEEcCCHHHHHHHHHHHHHHh
Q psy933 293 ---------------FFDLTVVNNDIEETIGILEKAIEEL 317 (330)
Q Consensus 293 ---------------~fd~~ivn~~~~~~~~~l~~~~~~~ 317 (330)
..|..|+=.|++... .+...++.+
T Consensus 244 eHIGSTsVpGl~AKPiIDI~v~V~~~~~~~-~~~~~l~~~ 282 (395)
T PRK03333 244 DHIGSTAVPGLDAKDVIDIQVTVESLAVAD-ELAEPLAAA 282 (395)
T ss_pred EEeccCCCCCCccCCeeeEEEeeCChHHHH-HHHHHHHHC
Confidence 456666666665443 233344433
No 266
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.42 E-value=0.0031 Score=58.38 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=29.3
Q ss_pred cCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 80 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 80 ~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-+|.+..-.+++.+..++|+||+|+|||+|.+.|.-..
T Consensus 12 ~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~ll 49 (251)
T cd03273 12 KSYATRTVISGFDPQFNAITGLNGSGKSNILDAICFVL 49 (251)
T ss_pred cccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35666554545556799999999999999999987554
No 267
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.39 E-value=0.0034 Score=63.28 Aligned_cols=57 Identities=21% Similarity=0.282 Sum_probs=41.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
+..|+|+|++|||||||.++|..... .+....|.|||..-.+ +.+|..+.+++..-+
T Consensus 203 g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~ 261 (442)
T TIGR00450 203 GFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGI 261 (442)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCc
Confidence 34799999999999999999987532 3566788899875443 345666666655443
No 268
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0019 Score=65.71 Aligned_cols=65 Identities=18% Similarity=0.321 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhh---HHhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMS---DIAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~---~i~~~~fle~~~~~ 166 (330)
.+.-|+|+|+||||||||.+.|...++ |..||+ +|.+-.-.+.+...+ ++.+...+..++..
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~-------------~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr 429 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWD-------------PQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLR 429 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccC-------------CCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHH
Confidence 567899999999999999998887664 445554 676665565543333 34566666666666
Q ss_pred Ccc
Q psy933 167 DAM 169 (330)
Q Consensus 167 g~~ 169 (330)
+|+
T Consensus 430 ~NL 432 (573)
T COG4987 430 DNL 432 (573)
T ss_pred HHH
Confidence 663
No 269
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.37 E-value=0.0032 Score=55.60 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.+.+.|+|+||||||||+++|+..+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 345889999999999999999998764
No 270
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.36 E-value=0.032 Score=50.74 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|-|.-||||||+++.|.+.+.
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~ 24 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLG 24 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998753
No 271
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.35 E-value=0.0026 Score=52.70 Aligned_cols=27 Identities=19% Similarity=0.509 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 457999999999999999998876654
No 272
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.34 E-value=0.0034 Score=55.51 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLI 114 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~ 114 (330)
.+..++|+||+|+|||||.+.++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 46799999999999999999775
No 273
>PF13173 AAA_14: AAA domain
Probab=96.34 E-value=0.0037 Score=51.78 Aligned_cols=26 Identities=31% Similarity=0.615 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+++++|.||.|||||||++.+++.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999999998754
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.34 E-value=0.0039 Score=58.55 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=33.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEeccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHD 148 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~ 148 (330)
.+.++.|+|.||||||||++.|+...+ |..|++ +|.+....+++
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~-------------pt~G~i~f~g~~i~~~~~~ 83 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEE-------------PTSGEILFEGKDITKLSKE 83 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcC-------------CCCceEEEcCcchhhcchh
Confidence 568999999999999999999998765 445554 66665555543
No 275
>PLN03110 Rab GTPase; Provisional
Probab=96.33 E-value=0.092 Score=47.41 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
--|+++|++|||||||+++|...
T Consensus 13 ~Ki~ivG~~~vGKStLi~~l~~~ 35 (216)
T PLN03110 13 FKIVLIGDSGVGKSNILSRFTRN 35 (216)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 276
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.33 E-value=0.014 Score=54.47 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEec----ccchhhHHh-----ccceeeEE
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFIS----HDEMMSDIA-----ANQYLEYG 163 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs----~~~f~~~i~-----~~~fle~~ 163 (330)
+..|+++||+||||||+++.|+...|..-...+..- .|.+-..++.+...+. ...|.+.+. .-+.+-.|
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE--d~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiig 204 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE--DPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIG 204 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE--SSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEES
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEec--cccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccc
Confidence 579999999999999999999999886401111111 2222222333322221 123433332 44566677
Q ss_pred eecCccccccHHHHHHHHHhCCeE-EEEeCH
Q psy933 164 THEDAMYGTKLETIRRIHQEGKIA-ILDVEP 193 (330)
Q Consensus 164 ~~~g~~YGts~~~i~~v~~~gk~~-vldv~~ 193 (330)
|..+. ..... -+++..|..+ +..++.
T Consensus 205 EiR~~---e~~~~-~~a~~tGh~~~~tT~Ha 231 (270)
T PF00437_consen 205 EIRDP---EAAEA-IQAANTGHLGSLTTLHA 231 (270)
T ss_dssp CE-SC---HHHHH-HHHHHTT-EEEEEEEE-
T ss_pred ccCCH---hHHHH-HHhhccCCceeeeeeec
Confidence 66653 22333 3355667666 655553
No 277
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.32 E-value=0.0041 Score=45.67 Aligned_cols=22 Identities=14% Similarity=0.454 Sum_probs=19.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~ 115 (330)
...+|+||+|+|||||.+.+.-
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998754
No 278
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.31 E-value=0.0031 Score=61.73 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+++++|+||+|+|||||++.|++...
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999998764
No 279
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.31 E-value=0.027 Score=61.38 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
+.-++|+||+|+|||+|+..|+.....
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 347889999999999999999987653
No 280
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.30 E-value=0.018 Score=50.61 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~ 115 (330)
+.++|.|..|||||||+++|++
T Consensus 1 Pv~ii~GfLGsGKTTli~~ll~ 22 (178)
T PF02492_consen 1 PVIIITGFLGSGKTTLINHLLK 22 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999994
No 281
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.29 E-value=0.1 Score=46.86 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHhhC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~ 117 (330)
|+|+|.+|+|||||+++|+...
T Consensus 2 i~iiG~~~~GKStL~~~Ll~~~ 23 (208)
T cd04166 2 FLTCGSVDDGKSTLIGRLLYDS 23 (208)
T ss_pred EEEEECCCCCHHHHHHHHHHHc
Confidence 7899999999999999998653
No 282
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.29 E-value=0.003 Score=58.65 Aligned_cols=35 Identities=20% Similarity=0.394 Sum_probs=29.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTT 129 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TT 129 (330)
-+|++|+||||||+|+..|+...+..|...+-.|.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEec
Confidence 47889999999999999999998888866655543
No 283
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.29 E-value=0.0026 Score=57.12 Aligned_cols=25 Identities=28% Similarity=0.553 Sum_probs=22.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.|+|+||+||||||.+-+|+..+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~ 26 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLK 26 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHh
Confidence 6899999999999999999987754
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.29 E-value=0.004 Score=58.08 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=36.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCC--cccCCeeEEEecccch
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRS--DEENGRAYYFISHDEM 150 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~--~E~~G~dy~fvs~~~f 150 (330)
-.|+|+|.+|||||||+|.|+..... .....+.+|+.... ++.+|..+.++|..-|
T Consensus 32 ~~IllvG~tGvGKSSliNaLlg~~~~-~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl 89 (249)
T cd01853 32 LTILVLGKTGVGKSSTINSIFGERKA-ATSAFQSETLRVREVSGTVDGFKLNIIDTPGL 89 (249)
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCc
Confidence 47999999999999999999976421 12223334443322 2446677777766554
No 285
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.28 E-value=0.0054 Score=54.41 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..|+|+|++|||||||.++|....
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcch
Confidence 479999999999999999998753
No 286
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.28 E-value=0.0033 Score=55.16 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHHhhC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~ 117 (330)
|+|+||+||||||+++.|.+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999875
No 287
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.27 E-value=0.01 Score=52.98 Aligned_cols=25 Identities=32% Similarity=0.495 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.-|+++|++|||||||+++|.....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 4689999999999999999997654
No 288
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.26 E-value=0.048 Score=51.26 Aligned_cols=28 Identities=11% Similarity=0.318 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
....|+|+||+|+||||+++.|+...+.
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3458999999999999999999877653
No 289
>PRK06620 hypothetical protein; Validated
Probab=96.25 E-value=0.021 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=19.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
++++|.||+|+|||+|++.+...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 67999999999999999976544
No 290
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.25 E-value=0.0038 Score=55.59 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=68.1
Q ss_pred ccccccHHHHHHHHHhCCeEEEE--------eCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhh
Q psy933 168 AMYGTKLETIRRIHQEGKIAILD--------VEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSA 239 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vld--------v~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~ 239 (330)
+||-.+.+..+..++.|...--. ++.++++..-..+. ..++-+.+. ....+...
T Consensus 51 dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~~~~i~~~~~~g~-~~i~d~~~~-----------------g~~~l~~~ 112 (186)
T PRK14737 51 TYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKAFIEDAFKEGR-SAIMDIDVQ-----------------GAKIIKEK 112 (186)
T ss_pred eeEeCCHHHHHHHHHcCCeEEEEEECCeeecCcHHHHHHHHHcCC-eEEEEcCHH-----------------HHHHHHHh
Confidence 36778899999999888765432 23344555544443 222222221 11122223
Q ss_pred cccc-ceEEEecCCHHHHHHHHHHHHHHhcCCCcccccccccc--chhhhhhhccceeeEEEEcCCHHHHHHHHHHHHH
Q psy933 240 YEHF-FDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAK--ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE 315 (330)
Q Consensus 240 ~~~~-fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~~--~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~ 315 (330)
|+.. +-.-|.-.+.+...+.|. .....-+ .-+.+ +++.+|..++|+||.||+|+|+++|+.+|+++|.
T Consensus 113 ~~~~~~~Ifi~pps~e~l~~RL~-------~R~~~s~-e~i~~Rl~~~~~e~~~~~~~D~vI~N~dle~a~~ql~~ii~ 183 (186)
T PRK14737 113 FPERIVTIFIEPPSEEEWEERLI-------HRGTDSE-ESIEKRIENGIIELDEANEFDYKIINDDLEDAIADLEAIIC 183 (186)
T ss_pred CCCCeEEEEEECCCHHHHHHHHH-------hcCCCCH-HHHHHHHHHHHHHHhhhccCCEEEECcCHHHHHHHHHHHHh
Confidence 4432 222233346655444443 2222211 11211 2345788899999999999999999999998874
No 291
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.25 E-value=0.0034 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|++||||||+++.|.+.+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 292
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=96.24 E-value=0.0056 Score=52.72 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+|++|||||+|.++|...++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~ 24 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP 24 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC
Confidence 379999999999999999986543
No 293
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.22 E-value=0.0058 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+++|++|||||||.++|....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999997553
No 294
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=96.22 E-value=0.0029 Score=54.96 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=39.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEeccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHD 148 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~ 148 (330)
.|+|+|.++||||||.|+|..... -...-|-||+.+..|- ..+..+.|||..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~--~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlP 55 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQ--KVGNWPGTTVEKKEGIFKLGDQQVELVDLP 55 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSE--EEEESTTSSSEEEEEEEEETTEEEEEEE--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc--eecCCCCCCeeeeeEEEEecCceEEEEECC
Confidence 489999999999999999998763 3455688888776663 346777777654
No 295
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.22 E-value=0.0034 Score=56.75 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=24.8
Q ss_pred cccceEEEecC-CHHHHHHHHHHHHHHhcC
Q psy933 241 EHFFDLTVVNN-DIEETIGILEKAIEELHT 269 (330)
Q Consensus 241 ~~~fD~vI~N~-dle~a~~~L~~~i~~~~~ 269 (330)
...-|+||.|+ +++.+.+++..++..+..
T Consensus 166 ~~~ad~vi~n~~~i~~l~~~i~~~~~~~~~ 195 (201)
T COG0237 166 LALADVVIDNDGSIENLLEQIEKLLKELLG 195 (201)
T ss_pred HhhcCChhhcCCCHHHHHHHHHHHHHHHHh
Confidence 46789999998 999999999999887654
No 296
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.21 E-value=0.027 Score=59.32 Aligned_cols=24 Identities=25% Similarity=0.494 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.++|.||.|+||||+++.|++...
T Consensus 40 AyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 40 AYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhh
Confidence 489999999999999999988754
No 297
>CHL00181 cbbX CbbX; Provisional
Probab=96.20 E-value=0.0094 Score=56.71 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+..++|.||+|+|||++++.|.+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999997753
No 298
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.19 E-value=0.0042 Score=50.80 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++.++|.||+|+|||++++++.+.+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 46899999999999999999998764
No 299
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=96.18 E-value=0.018 Score=48.11 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=32.7
Q ss_pred EEcCCCccHHHHHHHHHhhCCCCccccccccccCCCC--cccCCeeEEEecccc
Q psy933 98 LLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRS--DEENGRAYYFISHDE 149 (330)
Q Consensus 98 LvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~--~E~~G~dy~fvs~~~ 149 (330)
|+|++|||||||.++|.... .+....+.||+.... -+.+|.++.+++..-
T Consensus 1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG 52 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPG 52 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCC
Confidence 58999999999999997653 233344566665433 244566666665543
No 300
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.18 E-value=0.0032 Score=57.54 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+|.|+||+|||||||++.|...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 37899999999999999998876
No 301
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.17 E-value=0.013 Score=57.70 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.++.+.|.||+|+|||.+++.++.+.
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 34678889999999999999998875
No 302
>PLN02842 nucleotide kinase
Probab=96.17 E-value=0.085 Score=54.00 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.4
Q ss_pred EEEcCCCccHHHHHHHHHhhCC
Q psy933 97 VLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 97 vLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+||+||||||++++|.+.+.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg 22 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFG 22 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999998763
No 303
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.17 E-value=0.0041 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=20.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.|.|+||+|||||||+++|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 468899999999999999997653
No 304
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.17 E-value=0.0071 Score=55.17 Aligned_cols=114 Identities=11% Similarity=0.190 Sum_probs=55.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCC------C--ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEee
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPD------K--YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH 165 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~------~--f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~ 165 (330)
+.++|+||+|+|||.++-.|++.+.. + ...-++.+|-.|.+.|..|.+-.+.+.... ..|.+ --.++
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l----~~G~i-~a~ea 76 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPL----SDGII-NAEEA 76 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----G----GG-S---HHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccc----cCCCc-CHHHH
Confidence 47899999999999999999988542 1 122366788899999999998877764333 23331 00000
Q ss_pred cCccccccHHHHHHHHHhCCeEEEEeC-HHHHHHHHhcCC--CC---EEEEEccCccc
Q psy933 166 EDAMYGTKLETIRRIHQEGKIAILDVE-PQALKILRTGEF--SP---FVVFIAAPQLQ 217 (330)
Q Consensus 166 ~g~~YGts~~~i~~v~~~gk~~vldv~-~~~v~~L~~~~~--~p---~vIfI~pps~~ 217 (330)
+. .-++.|.+.. .++-|||+-. ..-++.+-+..+ .+ .++.+..|+.+
T Consensus 77 ~~----~Li~~v~~~~-~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~ 129 (233)
T PF01745_consen 77 HE----RLISEVNSYS-AHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEE 129 (233)
T ss_dssp HH----HHHHHHHTTT-TSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HH
T ss_pred HH----HHHHHHHhcc-ccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChH
Confidence 00 1122222222 3677888764 344555554322 23 35566666544
No 305
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.16 E-value=0.0047 Score=55.57 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 306
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=96.16 E-value=0.0055 Score=60.26 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||+|||||.+.|....+
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~ 44 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIE 44 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 568999999999999999999987765
No 307
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=96.16 E-value=0.0047 Score=64.68 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=40.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCcccc--ccccccCCC-CcccCCeeEEEecccchh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYP--VPHTTRSPR-SDEENGRAYYFISHDEMM 151 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~--v~~TTR~pr-~~E~~G~dy~fvs~~~f~ 151 (330)
..|+|+|++|+||||++|.|+... .|... -+.||+.-. .++.+|....+|+..-|.
T Consensus 119 lrIvLVGKTGVGKSSLINSILGek--vf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~ 177 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEV--KFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLK 177 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccc--cccccCCCCCceEEEEEEEEECCceEEEEECCCCC
Confidence 469999999999999999998763 23332 467887532 245678888888776553
No 308
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.15 E-value=0.0046 Score=56.53 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
.+..|+|+||+|+|||||++.|....+.
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3468999999999999999999987764
No 309
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=96.15 E-value=0.093 Score=49.83 Aligned_cols=70 Identities=23% Similarity=0.345 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCCEEEEEccCcccccc---C---------chHHHHHHHHHHHHHHhhccccceEEEecCCHHHHHHHHH
Q psy933 194 QALKILRTGEFSPFVVFIAAPQLQNLS---D---------YDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILE 261 (330)
Q Consensus 194 ~~v~~L~~~~~~p~vIfI~pps~~~l~---~---------~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~ 261 (330)
+.+..|++.+....+||+.+.+-.-++ + ....++-+.++.+.|+ ......|.||...++. ..+|+
T Consensus 71 ~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~-~lr~~Ad~vIDTs~l~--~~~Lr 147 (284)
T PF03668_consen 71 EALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLE-PLRERADLVIDTSNLS--VHQLR 147 (284)
T ss_pred HHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHH-HHHHhCCEEEECCCCC--HHHHH
Confidence 345667778888999999986532222 1 1112334555555443 4567899999887543 35555
Q ss_pred HHHHH
Q psy933 262 KAIEE 266 (330)
Q Consensus 262 ~~i~~ 266 (330)
+.|..
T Consensus 148 ~~i~~ 152 (284)
T PF03668_consen 148 ERIRE 152 (284)
T ss_pred HHHHH
Confidence 55544
No 310
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.15 E-value=0.0048 Score=55.51 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 467999999999999999999987654
No 311
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=96.14 E-value=0.008 Score=51.78 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..|+|+|++|||||+|+++|...
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccC
Confidence 46889999999999999999865
No 312
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.14 E-value=0.0049 Score=55.19 Aligned_cols=27 Identities=19% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999886653
No 313
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=96.14 E-value=0.21 Score=44.55 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.|+|+|++|+|||||.+.|...
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999654
No 314
>PF05729 NACHT: NACHT domain
Probab=96.13 E-value=0.0049 Score=52.00 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
|+++|.|++|+|||+++.+++....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 6899999999999999999987654
No 315
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.13 E-value=0.0041 Score=57.33 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.8
Q ss_pred EEEEcCCCccHHHHHHHHHhhC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~ 117 (330)
|+|+||+||||+|++++|.+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999875
No 316
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.13 E-value=0.0049 Score=56.26 Aligned_cols=27 Identities=15% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999987654
No 317
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.13 E-value=0.005 Score=54.31 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998886654
No 318
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.13 E-value=0.0039 Score=51.59 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHhh
Q psy933 96 LVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~ 116 (330)
|+|+||+|||||||.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999764
No 319
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.13 E-value=0.013 Score=55.59 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.+++|.||+|+|||++++.+.+..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999997776553
No 320
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.13 E-value=0.0051 Score=55.13 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999987653
No 321
>PLN02772 guanylate kinase
Probab=96.11 E-value=0.024 Score=56.25 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=28.2
Q ss_pred hhhh-hhccceeeEEEEcCCHHHHHHHHHHHHHH
Q psy933 284 DILK-SAYEHFFDLTVVNNDIEETIGILEKAIEE 316 (330)
Q Consensus 284 ~~~e-~~y~h~fd~~ivn~~~~~~~~~l~~~~~~ 316 (330)
..|+ ..|+|+||.+|+||||++|+++|+++|..
T Consensus 285 ~Ei~~~~~~~~fD~vIvNDdLe~A~~~L~~iL~~ 318 (398)
T PLN02772 285 AELEQGKSSGIFDHILYNDNLEECYKNLKKLLGL 318 (398)
T ss_pred HHHhhccccCCCCEEEECCCHHHHHHHHHHHHhh
Confidence 4566 35789999999999999999999998853
No 322
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.10 E-value=0.0052 Score=51.30 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHhh
Q psy933 96 LVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~ 116 (330)
|+|+||+|||||+|.++|...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999854
No 323
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.10 E-value=0.0052 Score=55.94 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 324
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.10 E-value=0.019 Score=49.43 Aligned_cols=129 Identities=18% Similarity=0.330 Sum_probs=65.5
Q ss_pred CCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhc---ccee-eEEeecCccc-cccHHH
Q psy933 102 HGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAA---NQYL-EYGTHEDAMY-GTKLET 176 (330)
Q Consensus 102 sGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~---~~fl-e~~~~~g~~Y-Gts~~~ 176 (330)
+||||||+.+.|++... +-|+|-+.+-..... ++|+ ++| ...| -.-.+.
T Consensus 1 ~GsGKStvg~~lA~~L~-----------------------~~fiD~D~~i~~~~g~si~~i~~~~G---~~~fr~~E~~~ 54 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG-----------------------RPFIDLDDEIEERTGMSISEIFAEEG---EEAFRELESEA 54 (158)
T ss_dssp TTSSHHHHHHHHHHHHT-----------------------SEEEEHHHHHHHHHTSHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhC-----------------------CCccccCHHHHHHhCCcHHHHHHcCC---hHHHHHHHHHH
Confidence 59999999999998753 345554443221111 1111 111 0111 122344
Q ss_pred HHHHHHhCCeEEEEe------CHHHHHHHHhcCCCCEEEEEccCccccccC------------chH---HHHHHHHHHHH
Q psy933 177 IRRIHQEGKIAILDV------EPQALKILRTGEFSPFVVFIAAPQLQNLSD------------YDG---SLEKLAKESDI 235 (330)
Q Consensus 177 i~~v~~~gk~~vldv------~~~~v~~L~~~~~~p~vIfI~pps~~~l~~------------~~e---~~~rl~~~~~~ 235 (330)
+.+++..+ .||+.+ .++....|+. ...+|||..+ .+.+.+ ... .+.++..+.
T Consensus 55 l~~l~~~~-~~VIa~GGG~~~~~~~~~~L~~---~g~vI~L~~~-~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R-- 127 (158)
T PF01202_consen 55 LRELLKEN-NCVIACGGGIVLKEENRELLKE---NGLVIYLDAD-PEELAERLRARDNRPLLKGKMEHEEILELLFER-- 127 (158)
T ss_dssp HHHHHCSS-SEEEEE-TTGGGSHHHHHHHHH---HSEEEEEE---HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHH--
T ss_pred HHHHhccC-cEEEeCCCCCcCcHHHHHHHHh---CCEEEEEeCC-HHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHH--
Confidence 45555444 566665 3455566663 3568888765 222221 011 111222222
Q ss_pred HHhhccccceEEEecC-C-HHHHHHHHHHHH
Q psy933 236 LKSAYEHFFDLTVVNN-D-IEETIGILEKAI 264 (330)
Q Consensus 236 ie~~~~~~fD~vI~N~-d-le~a~~~L~~~i 264 (330)
+..|...-|+++..+ . .++.+++|.+.|
T Consensus 128 -~~~Y~~~a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 128 -EPLYEQAADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp -HHHHHHHSSEEEETSSCHHHHHHHHHHHHH
T ss_pred -HHHHHhcCeEEEeCCCCCHHHHHHHHHHHh
Confidence 234667778888776 3 378888888766
No 325
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=96.10 E-value=0.14 Score=45.06 Aligned_cols=21 Identities=19% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHh
Q psy933 95 TLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~ 115 (330)
-|+|+|++|+|||||+++|..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~ 22 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSE 22 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHh
Confidence 389999999999999999986
No 326
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.09 E-value=0.035 Score=60.46 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
.+..++|+||+|+|||+|+..|+.....
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3357789999999999999999987654
No 327
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.08 E-value=0.0065 Score=53.45 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=30.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr 133 (330)
-.++++|.+++|||||.+.|...... -....|.|||...
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~-~~~~~pg~T~~~~ 156 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRAC-NVGATPGVTKSMQ 156 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccc-eecCCCCeEcceE
Confidence 47899999999999999999976542 3455778887543
No 328
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.08 E-value=0.0054 Score=55.26 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987653
No 329
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.08 E-value=0.0074 Score=54.18 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++..+.|+||||+|||||++.|....
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 45689999999999999999887653
No 330
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.08 E-value=0.005 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998876654
No 331
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.07 E-value=0.0054 Score=56.12 Aligned_cols=27 Identities=11% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 467999999999999999999886654
No 332
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.07 E-value=0.0057 Score=54.79 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999987654
No 333
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.04 E-value=0.0073 Score=50.82 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3889999999999999999865
No 334
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.04 E-value=0.0059 Score=55.07 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 335
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.03 E-value=0.0072 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+++|++|||||+|+++|+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
No 336
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.03 E-value=0.0057 Score=55.33 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 467999999999999999998886643
No 337
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.03 E-value=0.006 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998886653
No 338
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.03 E-value=0.0051 Score=51.02 Aligned_cols=22 Identities=18% Similarity=0.576 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||+|+++|...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGE 23 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4899999999999999999854
No 339
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.02 E-value=0.0057 Score=70.25 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=57.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhh---HHhccceeeEEeecCc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS---DIAANQYLEYGTHEDA 168 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~---~i~~~~fle~~~~~g~ 168 (330)
.+..|+|+|+||+|||||++.|+..++ ..+.| -+||+|..-++...+.+ .+.++.++..|+...|
T Consensus 1244 ~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I----------~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~N 1311 (1490)
T TIGR01271 1244 GGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEI----------QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311 (1490)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEE----------EECCEEcccCCHHHHHhceEEEeCCCccCccCHHHH
Confidence 567899999999999999999987764 22222 25899988887777665 4458888988888877
Q ss_pred c--cc-ccHHHHHHHHHh
Q psy933 169 M--YG-TKLETIRRIHQE 183 (330)
Q Consensus 169 ~--YG-ts~~~i~~v~~~ 183 (330)
+ ++ .+.+.+.++++.
T Consensus 1312 Ldp~~~~tdeei~~aL~~ 1329 (1490)
T TIGR01271 1312 LDPYEQWSDEEIWKVAEE 1329 (1490)
T ss_pred hCcccCCCHHHHHHHHHH
Confidence 5 22 244555666543
No 340
>KOG0734|consensus
Probab=96.02 E-value=0.012 Score=60.01 Aligned_cols=40 Identities=20% Similarity=0.467 Sum_probs=33.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhH
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~ 153 (330)
++=|.|+||+|.|||-|++.++-+ .|++|+|.+-.+|++|
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGE---------------------A~VPFF~~sGSEFdEm 376 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGE---------------------AGVPFFYASGSEFDEM 376 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcc---------------------cCCCeEeccccchhhh
Confidence 467999999999999999877632 4678999999988766
No 341
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.02 E-value=0.0061 Score=54.60 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 342
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.02 E-value=0.0061 Score=54.44 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999886643
No 343
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.006 Score=55.70 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 467999999999999999999987653
No 344
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.01 E-value=0.0055 Score=51.28 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999864
No 345
>PRK14528 adenylate kinase; Provisional
Probab=96.00 E-value=0.0058 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.574 Sum_probs=21.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.|+|+||+||||||++++|.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998775
No 346
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.99 E-value=0.18 Score=43.92 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+++|++|||||||+++|...
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~ 23 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTED 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999853
No 347
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.99 E-value=0.0077 Score=55.79 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 26 PGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 467999999999999999999887654
No 348
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.98 E-value=0.0063 Score=55.02 Aligned_cols=27 Identities=26% Similarity=0.517 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 349
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.98 E-value=0.0064 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 350
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=95.97 E-value=0.0097 Score=48.65 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|+|||||++.|....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 351
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=95.97 E-value=0.12 Score=50.15 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=31.4
Q ss_pred EEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE 136 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E 136 (330)
|.|+|-+.+|||||.+.+...-|. ...=|.||-.|.-|=
T Consensus 162 VGLVG~PNaGKSTlls~vS~AkPK--IadYpFTTL~PnLGv 200 (369)
T COG0536 162 VGLVGLPNAGKSTLLSAVSAAKPK--IADYPFTTLVPNLGV 200 (369)
T ss_pred cccccCCCCcHHHHHHHHhhcCCc--ccCCccccccCcccE
Confidence 678999999999999999988774 233467888887763
No 352
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.96 E-value=0.0061 Score=54.69 Aligned_cols=27 Identities=15% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 467999999999999999998876543
No 353
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.96 E-value=0.048 Score=56.03 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..++|.||+|+||||+++.|++..
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred eeEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998865
No 354
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=95.96 E-value=0.0069 Score=59.27 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=37.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc---CCeeEEEecccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE---NGRAYYFISHDE 149 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~---~G~dy~fvs~~~ 149 (330)
..|+|+|.++||||||.++|.... .+....+.||+.|....+ +|..+.++|..-
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G 246 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVG 246 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCc
Confidence 579999999999999999998753 344556778887754322 344555554443
No 355
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.96 E-value=0.0081 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
--|+|+|++|||||+|++++...
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~ 26 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSED 26 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36899999999999999999854
No 356
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=95.96 E-value=0.0087 Score=50.35 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 2 ki~liG~~~~GKSsli~~l~~~ 23 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYD 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999999854
No 357
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.95 E-value=0.006 Score=52.70 Aligned_cols=27 Identities=22% Similarity=0.586 Sum_probs=18.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.++.++|.|++|+|||+|.++++....
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999887654
No 358
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=95.94 E-value=0.011 Score=50.00 Aligned_cols=23 Identities=9% Similarity=0.303 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
+.|+|+|++|||||||.++|...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~ 23 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKT 23 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhc
Confidence 36899999999999999999864
No 359
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.94 E-value=0.0086 Score=55.55 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 567999999999999999999886643
No 360
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.94 E-value=0.0062 Score=55.49 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 467999999999999999999886654
No 361
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=95.94 E-value=0.056 Score=50.83 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.|.|+|+|++|+|||||.++|+..
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~ 25 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLF 25 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHh
Confidence 378999999999999999999854
No 362
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.94 E-value=0.11 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHhhC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++|+|++|+||||+++.|....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998664
No 363
>PLN02459 probable adenylate kinase
Probab=95.94 E-value=0.016 Score=54.54 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+||+|+||+|++.+|.+.+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~ 54 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG 54 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488899999999999999998763
No 364
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.044 Score=57.76 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..++|.||.|+||||+++.|++..
T Consensus 38 HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998875
No 365
>KOG3347|consensus
Probab=95.92 E-value=0.031 Score=48.36 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++-|+|.|.+|+||||++.+|++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 3568999999999999999999765
No 366
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0071 Score=54.64 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999886643
No 367
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.0075 Score=52.80 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999986654
No 368
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.92 E-value=0.0077 Score=54.59 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||+|+|||||++.|+...
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 56799999999999999999998776
No 369
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.90 E-value=0.007 Score=54.70 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~ 115 (330)
.+-.+|++||||||||||.|.++-
T Consensus 30 ~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 30 SGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred CCCEEEEEcCCCccHHHHHHHHhc
Confidence 356899999999999999996653
No 370
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.90 E-value=0.0074 Score=54.50 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987643
No 371
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.009 Score=56.34 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 32 EGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 567999999999999999998887654
No 372
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.89 E-value=0.0076 Score=53.66 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999987654
No 373
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.88 E-value=0.032 Score=48.22 Aligned_cols=24 Identities=13% Similarity=0.337 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..-|+|+|++|||||||.++|...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccC
Confidence 356899999999999999999753
No 374
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.0072 Score=55.96 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
..+..+.|+|+||||||||++.|+.....
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 35679999999999999999999876553
No 375
>PTZ00258 GTP-binding protein; Provisional
Probab=95.88 E-value=0.014 Score=57.95 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE 136 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E 136 (330)
..|+|+|.++||||||.+.|....+ -....|.||+.|..|-
T Consensus 22 ~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~ 62 (390)
T PTZ00258 22 LKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTAR 62 (390)
T ss_pred cEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEE
Confidence 4799999999999999999976654 3445689999988774
No 376
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.88 E-value=0.01 Score=57.91 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||+|||||++.|....+
T Consensus 30 ~Gei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 30 AGQIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999998876643
No 377
>PRK03003 GTP-binding protein Der; Reviewed
Probab=95.87 E-value=0.032 Score=56.69 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=36.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE 149 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~ 149 (330)
+.|+|+|.+|||||||.++|+.... ......+.+||....+ +.+|..+.+++..-
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G 95 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGG 95 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCC
Confidence 5699999999999999999986532 1234455667654333 34566666665533
No 378
>PRK15453 phosphoribulokinase; Provisional
Probab=95.87 E-value=0.0085 Score=56.91 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..|+|.|.|||||||+++.|.+.+.
T Consensus 5 ~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 5 HPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987654
No 379
>KOG3877|consensus
Probab=95.87 E-value=0.019 Score=54.27 Aligned_cols=116 Identities=18% Similarity=0.312 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCC----cccc---ccccccCCCCc--ccCCeeEEEeccc------------chh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDK----YAYP---VPHTTRSPRSD--EENGRAYYFISHD------------EMM 151 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~----f~~~---v~~TTR~pr~~--E~~G~dy~fvs~~------------~f~ 151 (330)
-+.|++-||-|+||++|++.|++...-. |..- +.-++-..|.- ..++ .+..-+.+ .|.
T Consensus 71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~-~cr~~di~~Fy~dPS~dlsa~~Q 149 (393)
T KOG3877|consen 71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPA-RCRLPDISMFYKDPSGDLSAAMQ 149 (393)
T ss_pred ceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCc-ccCchhHHHhccCCCccHHHHHH
Confidence 4799999999999999999999874211 1111 11111111110 0000 01100111 122
Q ss_pred hHHhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHH----HHHHHhcC---------------------CCC
Q psy933 152 SDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQA----LKILRTGE---------------------FSP 206 (330)
Q Consensus 152 ~~i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~----v~~L~~~~---------------------~~p 206 (330)
..+-.-.|..| .++++.++..|+-+||+-+|.+ +..++..+ +.|
T Consensus 150 ~r~y~~R~~QY-----------~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~P 218 (393)
T KOG3877|consen 150 DRIYNCRFDQY-----------LDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWP 218 (393)
T ss_pred HHHHHhHHHHH-----------HHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCc
Confidence 22333334433 7889999999999999988765 34443322 345
Q ss_pred E-EEEEccCcccccc
Q psy933 207 F-VVFIAAPQLQNLS 220 (330)
Q Consensus 207 ~-vIfI~pps~~~l~ 220 (330)
. ||||..|-.+.++
T Consensus 219 HLViYld~Pv~~v~~ 233 (393)
T KOG3877|consen 219 HLVIYLDTPVNKVLE 233 (393)
T ss_pred cEEEEEcCCcHHHHH
Confidence 4 8999998655543
No 380
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.86 E-value=0.0062 Score=52.37 Aligned_cols=21 Identities=19% Similarity=0.488 Sum_probs=18.0
Q ss_pred EEEEcCCCccHHHHHHHHHhh
Q psy933 96 LVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~ 116 (330)
|+|+|++|+|||||++.|.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 899999999999999999987
No 381
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.86 E-value=0.0079 Score=53.90 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 382
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.86 E-value=0.092 Score=56.12 Aligned_cols=56 Identities=18% Similarity=0.293 Sum_probs=37.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE 149 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~ 149 (330)
.+.|+|+|.++||||||.++|..... .+....|.+||..-.+ +.+|..+.+++..-
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G 332 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGG 332 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCC
Confidence 36799999999999999999986532 2334456677754332 34566666665543
No 383
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.85 E-value=0.0081 Score=51.00 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 567999999999999999998876654
No 384
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.85 E-value=0.0082 Score=52.30 Aligned_cols=27 Identities=22% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999887654
No 385
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.85 E-value=0.0078 Score=55.97 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 386
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.85 E-value=0.0069 Score=54.13 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+|+|.|+||||||||++.|.+..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998864
No 387
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.84 E-value=0.008 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 567999999999999999999986654
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.84 E-value=0.0085 Score=51.84 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998886543
No 389
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=95.84 E-value=0.0071 Score=51.18 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999854
No 390
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.83 E-value=0.0083 Score=54.41 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 568999999999999999999987654
No 391
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.0072 Score=54.17 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+ .++|+||+|+|||||++.|....+
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 5 899999999999999999986654
No 392
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.0081 Score=55.02 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999987654
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=95.83 E-value=0.0077 Score=59.22 Aligned_cols=43 Identities=19% Similarity=0.284 Sum_probs=32.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC---C-ccccccccccCCCCc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD---K-YAYPVPHTTRSPRSD 135 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~---~-f~~~v~~TTR~pr~~ 135 (330)
++.+.++|.+|||||||+|+|+..... . -....|+|||..-.-
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~ 206 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEI 206 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEE
Confidence 467899999999999999999975421 1 245688999976443
No 394
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.83 E-value=0.0082 Score=54.75 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999987653
No 395
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.82 E-value=0.0093 Score=51.96 Aligned_cols=27 Identities=15% Similarity=0.474 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 467999999999999999999987654
No 396
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=95.82 E-value=0.0099 Score=58.20 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||+|||||.+.|+-..+
T Consensus 29 ~Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 29 KGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 467999999999999999999987654
No 397
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.82 E-value=0.01 Score=49.86 Aligned_cols=22 Identities=36% Similarity=0.601 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.++++|++|||||||++.|...
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~ 106 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGK 106 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999854
No 398
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.82 E-value=0.0077 Score=54.66 Aligned_cols=27 Identities=15% Similarity=0.487 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 32 SGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 457999999999999999998886654
No 399
>PRK10908 cell division protein FtsE; Provisional
Probab=95.82 E-value=0.0084 Score=54.23 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999987654
No 400
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.80 E-value=0.0087 Score=54.76 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=20.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~ 115 (330)
.+..++|+||+|+|||||++.|.-
T Consensus 22 ~~~~~~i~GpNGsGKStll~ai~~ 45 (243)
T cd03272 22 SPKHNVVVGRNGSGKSNFFAAIRF 45 (243)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998863
No 401
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.80 E-value=0.0082 Score=54.52 Aligned_cols=27 Identities=33% Similarity=0.646 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999887654
No 402
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.80 E-value=0.0086 Score=54.29 Aligned_cols=27 Identities=22% Similarity=0.517 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 467899999999999999999987654
No 403
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.79 E-value=0.0089 Score=53.64 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999987654
No 404
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=95.79 E-value=0.0086 Score=53.27 Aligned_cols=25 Identities=36% Similarity=0.667 Sum_probs=19.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
+++.|+|+||+|+|||+|-.+|...
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcC
Confidence 3578999999999999999999875
No 405
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.79 E-value=0.011 Score=55.98 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 32 ~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 32 DGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 568999999999999999999987654
No 406
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.79 E-value=0.0087 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999987654
No 407
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.79 E-value=0.0082 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
+-|+|+|++|||||+|+++|...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~ 24 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKD 24 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 408
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=95.79 E-value=0.077 Score=42.44 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.2
Q ss_pred EEcCCCccHHHHHHHHHhhCC
Q psy933 98 LLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 98 LvGpsGvGKstL~~~L~~~~p 118 (330)
|+|++|+|||||+++|.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc
Confidence 589999999999999986543
No 409
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.79 E-value=0.0086 Score=53.88 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 457999999999999999999987654
No 410
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.78 E-value=0.0093 Score=53.45 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999987654
No 411
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.78 E-value=0.0086 Score=54.40 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999986643
No 412
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=95.78 E-value=0.011 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHhh
Q psy933 96 LVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~ 116 (330)
|+|+|++|||||||+++|...
T Consensus 2 vvlvG~~~~GKTsl~~~l~~~ 22 (169)
T cd04158 2 VVTLGLDGAGKTTILFKLKQD 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 413
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.0067 Score=59.85 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||+||||||++.+|+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998764
No 414
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=95.77 E-value=0.0095 Score=50.83 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||+|.+++...
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999999854
No 415
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.77 E-value=0.0075 Score=59.70 Aligned_cols=27 Identities=22% Similarity=0.581 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+++.|+|+||+||||||-..+|+..+-
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 479999999999999998888988764
No 416
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.77 E-value=0.0089 Score=53.44 Aligned_cols=27 Identities=19% Similarity=0.391 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 467999999999999999999986654
No 417
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.77 E-value=0.0091 Score=53.08 Aligned_cols=27 Identities=19% Similarity=0.409 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999887654
No 418
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.76 E-value=0.0093 Score=52.94 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999987654
No 419
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.76 E-value=0.0098 Score=53.01 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999998886653
No 420
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.76 E-value=0.0099 Score=54.98 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
...++|+||+|+|||||++.+....+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34799999999999999999988765
No 421
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.75 E-value=0.0098 Score=51.62 Aligned_cols=27 Identities=22% Similarity=0.511 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999987654
No 422
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.75 E-value=0.015 Score=59.72 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+.++.|+|+||||||||++.|+...+
T Consensus 316 ~GE~lglVGeSGsGKSTlar~i~gL~~ 342 (539)
T COG1123 316 EGETLGLVGESGSGKSTLARILAGLLP 342 (539)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999987765
No 423
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0068 Score=58.32 Aligned_cols=95 Identities=17% Similarity=0.355 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccc-hhhHHhccceeeEEeecCcccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE-MMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~-f~~~i~~~~fle~~~~~g~~YG 171 (330)
+.-|.|+||+|||||-|++.|++... ..+++...|---.. | |.--+.+. +.+.+++-+|=--.--+|--|
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~Ln--VPFaiADATtLTEA----G--YVGEDVENillkLlqaadydV~rAerGIIy- 167 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILN--VPFAIADATTLTEA----G--YVGEDVENILLKLLQAADYDVERAERGIIY- 167 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhC--CCeeeccccchhhc----c--ccchhHHHHHHHHHHHcccCHHHHhCCeEE-
Confidence 35799999999999999999998764 23333322221111 2 33333343 334444444422222234444
Q ss_pred ccHHHHHHHHHhCCe--EEEEeCHHHHHH
Q psy933 172 TKLETIRRIHQEGKI--AILDVEPQALKI 198 (330)
Q Consensus 172 ts~~~i~~v~~~gk~--~vldv~~~~v~~ 198 (330)
++.|+++..+... .--|++.+|+++
T Consensus 168 --IDEIDKIarkSeN~SITRDVSGEGVQQ 194 (408)
T COG1219 168 --IDEIDKIARKSENPSITRDVSGEGVQQ 194 (408)
T ss_pred --EechhhhhccCCCCCcccccCchHHHH
Confidence 5677777766433 335899999876
No 424
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.75 E-value=0.0057 Score=55.59 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=26.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV 125 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v 125 (330)
+.|+|.|++||||||+++.|++...+.....+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 57999999999999999999988766544443
No 425
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.74 E-value=0.0098 Score=52.16 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999998886553
No 426
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.0093 Score=54.65 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999986643
No 427
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=95.73 E-value=0.032 Score=48.13 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHh
Q psy933 95 TLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~ 115 (330)
-|+|+|++|||||+|+++|..
T Consensus 11 kv~i~G~~~~GKTsli~~l~~ 31 (168)
T cd04149 11 RILMLGLDAAGKTTILYKLKL 31 (168)
T ss_pred EEEEECcCCCCHHHHHHHHcc
Confidence 589999999999999999964
No 428
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.067 Score=56.20 Aligned_cols=24 Identities=21% Similarity=0.546 Sum_probs=21.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..++|.||.|+||||+++.|++..
T Consensus 39 ha~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999999999999998764
No 429
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=95.73 E-value=0.012 Score=57.13 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+|+||+|||||++.|+...+
T Consensus 46 ~Ge~~~lvG~sGsGKSTLlk~i~Gl~~ 72 (331)
T PRK15079 46 EGETLGVVGESGCGKSTFARAIIGLVK 72 (331)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 568999999999999999999987654
No 430
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.062 Score=56.57 Aligned_cols=24 Identities=21% Similarity=0.542 Sum_probs=21.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..++|.||.|+||||+++.|.+..
T Consensus 39 HA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998875
No 431
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=95.73 E-value=0.011 Score=58.87 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 53 ~Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 53 EGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 567999999999999999999987654
No 432
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.72 E-value=0.0096 Score=53.22 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999987654
No 433
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.72 E-value=0.0097 Score=54.09 Aligned_cols=27 Identities=11% Similarity=0.286 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 567999999999999999999887643
No 434
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=95.72 E-value=0.0098 Score=50.07 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++++..
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999854
No 435
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.72 E-value=0.0092 Score=56.37 Aligned_cols=28 Identities=14% Similarity=0.521 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
.++|++|+||+|+|||.+++.+++..+.
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~ 59 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDS 59 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTT
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCc
Confidence 5689999999999999999888876543
No 436
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.71 E-value=0.018 Score=51.16 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..+..|.|+||||+|||||.--|+-..
T Consensus 34 ~~Ge~vaiVG~SGSGKSTLl~vlAGLd 60 (228)
T COG4181 34 KRGETVAIVGPSGSGKSTLLAVLAGLD 60 (228)
T ss_pred cCCceEEEEcCCCCcHHhHHHHHhcCC
Confidence 356789999999999999999887543
No 437
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.71 E-value=0.063 Score=58.30 Aligned_cols=25 Identities=16% Similarity=0.452 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..++|.||+|+||||+++.|++...
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Ln 63 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLN 63 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcc
Confidence 4678999999999999999998764
No 438
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.71 E-value=0.0098 Score=52.26 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999887654
No 439
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.71 E-value=0.01 Score=51.82 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 467999999999999999999987654
No 440
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=95.71 E-value=0.01 Score=58.15 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=34.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC----CccccccccccCCCCccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD----KYAYPVPHTTRSPRSDEE 137 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~----~f~~~v~~TTR~pr~~E~ 137 (330)
++.++|+|.+|||||||.|.|++.... --....|+||+.+...+.
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~ 202 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL 202 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe
Confidence 468999999999999999999986431 134457889987765554
No 441
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.70 E-value=0.0096 Score=54.53 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 568999999999999999999987654
No 442
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.70 E-value=0.0089 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+.|+||||||||.|++.|.+..-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999998753
No 443
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.70 E-value=0.0094 Score=52.87 Aligned_cols=25 Identities=20% Similarity=0.453 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..++|+||+|+|||||.+.|...
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999988754
No 444
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=95.69 E-value=0.0082 Score=51.00 Aligned_cols=22 Identities=36% Similarity=0.789 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999764
No 445
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.69 E-value=0.01 Score=54.25 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 446
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.69 E-value=0.0084 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|.|.|+||||||||++.|.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998753
No 447
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.68 E-value=0.01 Score=53.47 Aligned_cols=27 Identities=15% Similarity=0.396 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 467999999999999999999987654
No 448
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.68 E-value=0.012 Score=55.75 Aligned_cols=27 Identities=15% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (290)
T PRK13634 32 SGSYVAIIGHTGSGKSTLLQHLNGLLQ 58 (290)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 568999999999999999999987654
No 449
>PRK07667 uridine kinase; Provisional
Probab=95.68 E-value=0.0094 Score=53.11 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..|.|.|++|+||||+++.|.+...
T Consensus 17 ~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 17 RFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999999988754
No 450
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.68 E-value=0.052 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+|.|.|..|||+++|+++|++...
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg 24 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG 24 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT
T ss_pred CEEECCCCCCChHHHHHHHHHHcC
Confidence 488999999999999999999874
No 451
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=95.67 E-value=0.01 Score=55.45 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999987654
No 452
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.013 Score=61.50 Aligned_cols=46 Identities=26% Similarity=0.485 Sum_probs=34.6
Q ss_pred ccCceeeeccc-CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCcccc
Q psy933 79 LVTYEEVVKLP-SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYP 124 (330)
Q Consensus 79 ~~~Ye~V~~~~-~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~ 124 (330)
++-|=-|.++. .-.+++++|+||+|||||+|.+-+++....+|...
T Consensus 335 IlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 335 ILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 44565565554 34668999999999999999999998876666443
No 453
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.67 E-value=0.01 Score=54.12 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999987654
No 454
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.67 E-value=0.01 Score=54.61 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999886653
No 455
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=95.67 E-value=0.0093 Score=59.47 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 28 ~Geiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 28 EGSLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 568999999999999999999987654
No 456
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.67 E-value=0.01 Score=54.50 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987653
No 457
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=95.66 E-value=0.013 Score=49.87 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+++|++|||||+|.++|...
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999854
No 458
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.66 E-value=0.0066 Score=51.56 Aligned_cols=20 Identities=25% Similarity=0.606 Sum_probs=18.7
Q ss_pred EEcCCCccHHHHHHHHHhhC
Q psy933 98 LLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 98 LvGpsGvGKstL~~~L~~~~ 117 (330)
|+||+||||+|++++|++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999876
No 459
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.66 E-value=0.01 Score=56.19 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999987764
No 460
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.66 E-value=0.01 Score=54.78 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999887654
No 461
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=95.65 E-value=0.013 Score=57.13 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||+|+|||||++.|....+
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3568999999999999999999987654
No 462
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.64 E-value=0.01 Score=54.29 Aligned_cols=25 Identities=20% Similarity=0.512 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..++|+||+|+|||||.+.|+..
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4679999999999999999998865
No 463
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.63 E-value=0.019 Score=58.70 Aligned_cols=26 Identities=23% Similarity=0.558 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.++.|+|.||+|+|||.+++.++...
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999999998875
No 464
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.63 E-value=0.011 Score=51.91 Aligned_cols=25 Identities=36% Similarity=0.535 Sum_probs=21.1
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHH
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLI 114 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~ 114 (330)
+..+.++||+||||+|||+|.+-|.
T Consensus 25 ~~~getlvllgpsgagkssllr~ln 49 (242)
T COG4161 25 CPEGETLVLLGPSGAGKSSLLRVLN 49 (242)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHH
Confidence 3356799999999999999998764
No 465
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.63 E-value=0.011 Score=50.18 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.|.++||+|+|||||+..|++...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999988754
No 466
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.63 E-value=0.011 Score=54.63 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 467999999999999999999887643
No 467
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.63 E-value=0.0098 Score=53.25 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 457999999999999999998886653
No 468
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=95.63 E-value=0.36 Score=41.69 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+++|.+|||||+|+++++..
T Consensus 4 ki~vvG~~~vGKTsL~~~~~~~ 25 (172)
T cd04141 4 KIVMLGAGGVGKSAVTMQFISH 25 (172)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4889999999999999999853
No 469
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.63 E-value=0.0097 Score=54.92 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 567999999999999999999987654
No 470
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.62 E-value=0.011 Score=54.67 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||+|+|||||.+.|....
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998653
No 471
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.61 E-value=0.011 Score=53.10 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 23 DGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568999999999999999999987754
No 472
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=95.61 E-value=0.0097 Score=50.25 Aligned_cols=22 Identities=14% Similarity=0.625 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999854
No 473
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.60 E-value=0.011 Score=53.90 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999987654
No 474
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.59 E-value=0.01 Score=55.32 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 567999999999999999999887654
No 475
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.59 E-value=0.011 Score=55.29 Aligned_cols=27 Identities=15% Similarity=0.379 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999987654
No 476
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.59 E-value=0.011 Score=54.03 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999987654
No 477
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.59 E-value=0.012 Score=54.27 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 567999999999999999999986653
No 478
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.59 E-value=0.0095 Score=56.46 Aligned_cols=26 Identities=27% Similarity=0.554 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.++.|+|+||+||||||++.+|+..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998765
No 479
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=95.59 E-value=0.012 Score=53.31 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 33 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 33 AGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999987754
No 480
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.012 Score=54.48 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 568999999999999999999987654
No 481
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.57 E-value=0.011 Score=55.34 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999887643
No 482
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.56 E-value=0.021 Score=54.75 Aligned_cols=28 Identities=25% Similarity=0.680 Sum_probs=25.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
.+..++|+||+|+|||||++.|+...|.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 4679999999999999999999988774
No 483
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=0.03 Score=48.94 Aligned_cols=101 Identities=14% Similarity=0.282 Sum_probs=53.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
|++..++.||.||||||+-.-+....- + ...||+.+++-..+....--+.. + --|
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~--------------------~-~~~~VN~D~iA~~i~p~~p~~~~-i---~A~ 55 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLL--------------------P-GIVFVNADEIAAQISPDNPTSAA-I---QAA 55 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhc--------------------C-CeEEECHHHHhhhcCCCCchHHH-H---HHH
Confidence 356788899999999997653322111 1 23456655554333211100000 0 000
Q ss_pred -ccHHHHHHHHHhCCeEEEEeCHHH------HHHHHhcCCCCEEEEEccCccc
Q psy933 172 -TKLETIRRIHQEGKIAILDVEPQA------LKILRTGEFSPFVVFIAAPQLQ 217 (330)
Q Consensus 172 -ts~~~i~~v~~~gk~~vldv~~~~------v~~L~~~~~~p~vIfI~pps~~ 217 (330)
.-..-+...+..|+...++....+ ++.-+..++.....|+-.++.+
T Consensus 56 r~ai~~i~~~I~~~~~F~~ETtLS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~e 108 (187)
T COG4185 56 RVAIDRIARLIDLGRPFIAETTLSGPSILELIKTAKAAGFYIVLNYIVIDSVE 108 (187)
T ss_pred HHHHHHHHHHHHcCCCcceEEeeccchHHHHHHHHHhCCeEEEEEEEEeCcHH
Confidence 113334555677777777665444 3444456777777777777654
No 484
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.55 E-value=0.012 Score=53.48 Aligned_cols=27 Identities=30% Similarity=0.599 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 485
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.55 E-value=0.012 Score=54.40 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999986653
No 486
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.55 E-value=0.012 Score=54.18 Aligned_cols=27 Identities=15% Similarity=0.321 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 467999999999999999999987653
No 487
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.55 E-value=0.015 Score=49.11 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..|+|.|+.|+|||||++.|++...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998864
No 488
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.55 E-value=0.013 Score=52.91 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 489
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.54 E-value=0.012 Score=54.91 Aligned_cols=27 Identities=26% Similarity=0.498 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~~ 51 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLK 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 567999999999999999999987764
No 490
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=95.53 E-value=0.021 Score=51.65 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|+...+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999999987654
No 491
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.53 E-value=0.008 Score=56.73 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|.|+|+|||||||++++|.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999987654
No 492
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.53 E-value=0.012 Score=55.44 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 26 PGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999999987654
No 493
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.53 E-value=0.012 Score=53.61 Aligned_cols=27 Identities=11% Similarity=0.329 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (237)
T cd03252 27 PGEVVGIVGRSGSGKSTLTKLIQRFYV 53 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 567999999999999999999987654
No 494
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.53 E-value=0.011 Score=55.21 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 467999999999999999998886654
No 495
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.52 E-value=0.011 Score=50.96 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
++-|+|+||||+||||++..|++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999999999875
No 496
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.52 E-value=0.015 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+++|++|||||+|.++|...
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~ 26 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRN 26 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999854
No 497
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=95.52 E-value=0.015 Score=55.70 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999999987643
No 498
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.51 E-value=0.01 Score=47.83 Aligned_cols=23 Identities=17% Similarity=0.502 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHhhCC
Q psy933 96 LVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 96 ivLvGpsGvGKstL~~~L~~~~p 118 (330)
|.|.||+|+|||+|++.|++..-
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999886643
No 499
>PRK12377 putative replication protein; Provisional
Probab=95.51 E-value=0.3 Score=45.52 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..++|.||+|+|||.|+..+.....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 500
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.51 E-value=0.013 Score=54.28 Aligned_cols=26 Identities=19% Similarity=0.376 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||+|+|||||++.|....
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998664
Done!