Query psy933
Match_columns 330
No_of_seqs 363 out of 1832
Neff 6.9
Searched_HMMs 29240
Date Sat Aug 17 00:34:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tvt_A Disks large 1 tumor sup 100.0 2.7E-67 9.4E-72 496.3 21.9 245 1-277 34-287 (292)
2 1kjw_A Postsynaptic density pr 100.0 2.8E-60 9.5E-65 449.4 24.0 254 1-277 30-292 (295)
3 2xkx_A Disks large homolog 4; 100.0 2.3E-55 7.9E-60 460.3 25.3 254 1-277 456-718 (721)
4 3shw_A Tight junction protein 100.0 6.3E-54 2.2E-58 427.2 16.3 248 1-282 122-388 (468)
5 3tsz_A Tight junction protein 100.0 4.1E-52 1.4E-56 407.5 15.9 241 1-277 130-391 (391)
6 1ex7_A Guanylate kinase; subst 100.0 2.2E-48 7.6E-53 345.0 18.2 173 94-266 2-184 (186)
7 3kfv_A Tight junction protein 100.0 9.4E-48 3.2E-52 364.1 16.7 242 1-280 28-303 (308)
8 3ney_A 55 kDa erythrocyte memb 100.0 2.5E-47 8.7E-52 341.0 18.5 184 88-274 14-197 (197)
9 4dey_A Voltage-dependent L-typ 100.0 9.4E-40 3.2E-44 311.1 10.2 241 1-269 69-323 (337)
10 1kgd_A CASK, peripheral plasma 100.0 8.6E-38 2.9E-42 273.5 18.1 178 90-267 2-179 (180)
11 3tau_A Guanylate kinase, GMP k 100.0 6.3E-34 2.2E-38 254.6 19.8 175 92-268 7-190 (208)
12 3a00_A Guanylate kinase, GMP k 100.0 2.4E-34 8.3E-39 252.5 15.4 174 93-266 1-184 (186)
13 2qor_A Guanylate kinase; phosp 100.0 1.1E-31 3.8E-36 238.6 19.8 177 92-268 11-198 (204)
14 1s96_A Guanylate kinase, GMP k 100.0 3.5E-30 1.2E-34 233.4 19.3 174 92-267 15-198 (219)
15 1lvg_A Guanylate kinase, GMP k 100.0 1.7E-30 6E-35 230.8 16.6 175 93-267 4-188 (198)
16 3tr0_A Guanylate kinase, GMP k 99.9 1E-24 3.4E-29 192.1 18.3 172 93-267 7-187 (205)
17 3lnc_A Guanylate kinase, GMP k 99.9 1.7E-25 5.9E-30 202.1 13.4 175 92-269 26-211 (231)
18 1z6g_A Guanylate kinase; struc 99.9 4.7E-23 1.6E-27 185.6 19.5 175 92-268 22-209 (218)
19 2j41_A Guanylate kinase; GMP, 99.9 2E-21 6.9E-26 170.8 16.2 174 92-268 5-188 (207)
20 1znw_A Guanylate kinase, GMP k 99.7 7.5E-17 2.6E-21 143.2 18.3 172 91-265 18-200 (207)
21 3exa_A TRNA delta(2)-isopenten 99.4 3.7E-14 1.3E-18 134.4 2.7 99 93-201 3-110 (322)
22 3a8t_A Adenylate isopentenyltr 99.4 1.3E-13 4.3E-18 132.0 6.3 89 93-191 40-137 (339)
23 3foz_A TRNA delta(2)-isopenten 99.4 4E-14 1.4E-18 134.0 1.8 99 92-200 9-116 (316)
24 3eph_A TRNA isopentenyltransfe 99.4 7.5E-14 2.6E-18 136.4 2.5 88 94-191 3-98 (409)
25 1gvn_B Zeta; postsegregational 99.3 1.7E-13 5.7E-18 128.3 2.1 159 92-269 32-231 (287)
26 3shw_A Tight junction protein 99.2 1.6E-11 5.3E-16 122.3 4.6 52 278-329 333-385 (468)
27 3kfv_A Tight junction protein 99.1 2.7E-11 9.3E-16 114.5 4.6 53 277-329 249-302 (308)
28 3crm_A TRNA delta(2)-isopenten 99.1 1.3E-11 4.3E-16 117.6 0.5 91 92-192 4-102 (323)
29 2ze6_A Isopentenyl transferase 99.0 1.5E-10 5.3E-15 106.0 4.5 113 94-217 2-129 (253)
30 3tsz_A Tight junction protein 98.9 3.1E-10 1.1E-14 110.7 3.8 49 278-326 341-390 (391)
31 3kb2_A SPBC2 prophage-derived 98.9 1.6E-08 5.5E-13 85.2 14.0 135 94-268 2-168 (173)
32 1qhx_A CPT, protein (chloramph 98.9 5.1E-09 1.7E-13 89.3 10.9 152 93-264 3-176 (178)
33 3lw7_A Adenylate kinase relate 98.9 6.8E-09 2.3E-13 87.1 11.4 150 94-267 2-177 (179)
34 3d3q_A TRNA delta(2)-isopenten 98.9 6E-10 2E-14 106.7 5.2 88 93-190 7-102 (340)
35 3tvt_A Disks large 1 tumor sup 98.9 4.3E-10 1.5E-14 105.7 3.6 50 278-327 238-287 (292)
36 2v54_A DTMP kinase, thymidylat 98.9 4.7E-09 1.6E-13 91.4 9.6 163 93-267 4-191 (204)
37 3t61_A Gluconokinase; PSI-biol 98.9 4.4E-09 1.5E-13 92.0 8.4 146 93-267 18-180 (202)
38 1zak_A Adenylate kinase; ATP:A 98.9 8.9E-10 3E-14 98.0 3.6 173 93-267 5-211 (222)
39 3ney_A 55 kDa erythrocyte memb 98.8 1.1E-09 3.9E-14 97.2 3.6 42 283-324 156-197 (197)
40 3trf_A Shikimate kinase, SK; a 98.8 8.4E-09 2.9E-13 88.6 9.1 144 93-266 5-174 (185)
41 4eaq_A DTMP kinase, thymidylat 98.8 5.8E-09 2E-13 94.2 8.0 162 92-267 25-225 (229)
42 3v9p_A DTMP kinase, thymidylat 98.8 1.1E-08 3.8E-13 92.6 9.0 165 92-267 24-227 (227)
43 1nn5_A Similar to deoxythymidy 98.8 1.2E-08 4.2E-13 89.3 7.7 167 92-268 8-202 (215)
44 2z0h_A DTMP kinase, thymidylat 98.8 5.9E-09 2E-13 90.1 5.3 160 95-267 2-192 (197)
45 3dl0_A Adenylate kinase; phosp 98.7 4.4E-08 1.5E-12 86.4 10.4 36 95-131 2-37 (216)
46 4eun_A Thermoresistant glucoki 98.7 3.1E-08 1.1E-12 86.7 9.1 151 90-266 26-193 (200)
47 2c95_A Adenylate kinase 1; tra 98.7 2.3E-08 7.9E-13 86.3 8.0 162 93-267 9-194 (196)
48 3vaa_A Shikimate kinase, SK; s 98.7 3E-08 1E-12 86.7 8.6 25 93-117 25-49 (199)
49 1kjw_A Postsynaptic density pr 98.7 6.5E-09 2.2E-13 97.7 3.9 49 279-327 244-292 (295)
50 3lv8_A DTMP kinase, thymidylat 98.7 5.6E-08 1.9E-12 88.5 10.0 165 92-268 26-230 (236)
51 3fb4_A Adenylate kinase; psych 98.7 4.8E-08 1.6E-12 86.0 8.9 24 95-118 2-25 (216)
52 1kht_A Adenylate kinase; phosp 98.7 1.3E-07 4.3E-12 81.0 11.3 152 93-264 3-191 (192)
53 1knq_A Gluconate kinase; ALFA/ 98.7 1.6E-07 5.3E-12 80.0 11.1 148 92-265 7-172 (175)
54 1qf9_A UMP/CMP kinase, protein 98.6 4.1E-08 1.4E-12 84.1 5.9 27 92-118 5-31 (194)
55 2wwf_A Thymidilate kinase, put 98.6 1.1E-07 3.8E-12 83.0 8.8 162 92-267 9-200 (212)
56 2xkx_A Disks large homolog 4; 98.6 2.9E-08 9.8E-13 103.9 4.6 48 280-327 671-718 (721)
57 3tlx_A Adenylate kinase 2; str 98.6 6.6E-08 2.2E-12 87.7 6.2 61 93-162 29-90 (243)
58 2bwj_A Adenylate kinase 5; pho 98.5 6.9E-08 2.4E-12 83.4 5.7 26 93-118 12-37 (199)
59 1ly1_A Polynucleotide kinase; 98.5 9.6E-08 3.3E-12 81.0 5.7 100 93-214 2-115 (181)
60 2plr_A DTMP kinase, probable t 98.5 2.8E-07 9.6E-12 80.1 8.1 26 93-118 4-29 (213)
61 2rhm_A Putative kinase; P-loop 98.5 5.2E-07 1.8E-11 77.5 9.4 99 93-214 5-114 (193)
62 1nks_A Adenylate kinase; therm 98.5 9.3E-08 3.2E-12 81.9 4.4 25 94-118 2-26 (194)
63 4edh_A DTMP kinase, thymidylat 98.5 8E-07 2.7E-11 79.4 10.5 163 93-267 6-207 (213)
64 1ukz_A Uridylate kinase; trans 98.5 1.7E-06 5.7E-11 75.3 12.4 161 92-266 14-201 (203)
65 2pbr_A DTMP kinase, thymidylat 98.4 1.1E-06 3.8E-11 75.2 9.6 160 95-267 2-192 (195)
66 2iyv_A Shikimate kinase, SK; t 98.4 2.8E-07 9.5E-12 79.0 5.8 25 93-117 2-26 (184)
67 2vli_A Antibiotic resistance p 98.4 1E-06 3.6E-11 75.0 9.3 147 93-268 5-173 (183)
68 1y63_A LMAJ004144AAA protein; 98.4 1.5E-06 5.1E-11 75.0 10.4 25 92-116 9-33 (184)
69 2cdn_A Adenylate kinase; phosp 98.4 1.2E-06 4.2E-11 76.2 9.5 27 92-118 19-45 (201)
70 1e6c_A Shikimate kinase; phosp 98.4 6.7E-07 2.3E-11 75.5 7.2 24 94-117 3-26 (173)
71 2pt5_A Shikimate kinase, SK; a 98.3 8.7E-07 3E-11 74.5 7.1 23 95-117 2-24 (168)
72 3iij_A Coilin-interacting nucl 98.3 2.4E-06 8.3E-11 72.9 9.6 25 93-117 11-35 (180)
73 3fdi_A Uncharacterized protein 98.3 4.5E-06 1.6E-10 73.6 11.5 26 93-118 6-31 (201)
74 1kag_A SKI, shikimate kinase I 98.3 2E-06 6.7E-11 72.7 8.6 26 93-118 4-29 (173)
75 1via_A Shikimate kinase; struc 98.3 7.4E-07 2.5E-11 75.9 5.0 24 94-117 5-28 (175)
76 1tev_A UMP-CMP kinase; ploop, 98.2 6.7E-06 2.3E-10 70.2 11.0 25 93-117 3-27 (196)
77 3zvl_A Bifunctional polynucleo 98.2 4.2E-06 1.4E-10 81.9 10.7 84 91-214 256-346 (416)
78 1m7g_A Adenylylsulfate kinase; 98.2 1.9E-06 6.4E-11 75.9 6.2 156 92-266 24-202 (211)
79 1gtv_A TMK, thymidylate kinase 98.2 2E-08 6.7E-13 88.1 -6.8 25 94-118 1-25 (214)
80 2jaq_A Deoxyguanosine kinase; 98.2 4.9E-06 1.7E-10 71.7 8.4 24 95-118 2-25 (205)
81 3nwj_A ATSK2; P loop, shikimat 98.2 6.2E-06 2.1E-10 75.5 9.3 25 93-117 48-72 (250)
82 2gks_A Bifunctional SAT/APS ki 98.1 6E-06 2.1E-10 83.7 9.7 152 92-266 371-540 (546)
83 3umf_A Adenylate kinase; rossm 98.1 8.4E-06 2.9E-10 73.1 9.6 26 92-117 28-53 (217)
84 3hdt_A Putative kinase; struct 98.1 2.2E-05 7.6E-10 70.6 12.4 24 94-117 15-38 (223)
85 1e4v_A Adenylate kinase; trans 98.1 4.1E-06 1.4E-10 73.8 7.2 163 95-264 2-213 (214)
86 3tmk_A Thymidylate kinase; pho 98.1 2.5E-05 8.5E-10 70.0 12.5 162 92-267 4-203 (216)
87 2bdt_A BH3686; alpha-beta prot 98.1 6.1E-06 2.1E-10 70.9 8.0 23 93-115 2-24 (189)
88 2yvu_A Probable adenylyl-sulfa 98.1 1.7E-05 5.8E-10 68.0 10.7 26 92-117 12-37 (186)
89 1jjv_A Dephospho-COA kinase; P 98.1 4.6E-06 1.6E-10 72.7 6.9 22 94-115 3-24 (206)
90 3a4m_A L-seryl-tRNA(SEC) kinas 98.1 4.3E-06 1.5E-10 76.3 6.9 147 94-265 5-172 (260)
91 1zd8_A GTP:AMP phosphotransfer 98.1 2.5E-06 8.7E-11 75.8 5.1 26 93-118 7-32 (227)
92 3ld9_A DTMP kinase, thymidylat 98.1 3.9E-06 1.3E-10 75.6 6.1 169 88-267 16-216 (223)
93 1np6_A Molybdopterin-guanine d 98.1 7.6E-07 2.6E-11 77.2 1.0 87 93-183 6-95 (174)
94 3cm0_A Adenylate kinase; ATP-b 98.1 7.4E-06 2.5E-10 69.9 7.2 25 93-117 4-28 (186)
95 1zuh_A Shikimate kinase; alpha 98.1 1.6E-06 5.5E-11 73.2 3.0 24 94-117 8-31 (168)
96 2f6r_A COA synthase, bifunctio 98.1 3.2E-06 1.1E-10 78.4 5.2 27 242-268 243-270 (281)
97 4tmk_A Protein (thymidylate ki 98.0 3.1E-05 1.1E-09 69.0 11.1 42 93-135 3-44 (213)
98 2grj_A Dephospho-COA kinase; T 98.0 4.9E-06 1.7E-10 73.1 5.7 56 205-267 130-187 (192)
99 1uf9_A TT1252 protein; P-loop, 98.0 5.5E-06 1.9E-10 71.5 5.7 24 93-116 8-31 (203)
100 2h92_A Cytidylate kinase; ross 98.0 3.8E-05 1.3E-09 67.4 11.1 24 94-117 4-27 (219)
101 2p5t_B PEZT; postsegregational 98.0 4.8E-06 1.7E-10 75.6 4.9 100 92-214 31-146 (253)
102 1rz3_A Hypothetical protein rb 98.0 4.1E-07 1.4E-11 79.7 -2.4 157 91-251 20-200 (201)
103 4e22_A Cytidylate kinase; P-lo 98.0 5.3E-05 1.8E-09 68.8 11.2 26 92-117 26-51 (252)
104 1a7j_A Phosphoribulokinase; tr 97.9 4.2E-08 1.4E-12 91.7 -10.2 125 93-219 5-162 (290)
105 2xb4_A Adenylate kinase; ATP-b 97.9 1.6E-05 5.5E-10 70.7 7.1 23 95-117 2-24 (223)
106 3ake_A Cytidylate kinase; CMP 97.9 0.00013 4.4E-09 63.0 12.4 25 94-118 3-27 (208)
107 1q3t_A Cytidylate kinase; nucl 97.9 4.9E-05 1.7E-09 68.0 9.7 26 92-117 15-40 (236)
108 4hlc_A DTMP kinase, thymidylat 97.9 8.6E-05 2.9E-09 65.7 10.8 162 92-267 1-201 (205)
109 3lxx_A GTPase IMAP family memb 97.9 9.9E-05 3.4E-09 65.8 11.1 53 94-148 30-86 (239)
110 1x6v_B Bifunctional 3'-phospho 97.9 2.4E-05 8.1E-10 80.5 7.8 153 92-267 51-223 (630)
111 2qt1_A Nicotinamide riboside k 97.8 3.6E-05 1.2E-09 67.1 7.9 26 93-118 21-46 (207)
112 1mky_A Probable GTP-binding pr 97.8 7.2E-05 2.5E-09 73.4 10.7 57 94-151 181-239 (439)
113 3be4_A Adenylate kinase; malar 97.8 0.00014 4.6E-09 64.2 11.5 24 94-117 6-29 (217)
114 1zp6_A Hypothetical protein AT 97.8 7.7E-06 2.6E-10 70.1 3.0 25 92-116 8-32 (191)
115 2if2_A Dephospho-COA kinase; a 97.8 3.2E-05 1.1E-09 67.1 6.4 32 240-271 164-196 (204)
116 1ltq_A Polynucleotide kinase; 97.8 2.4E-05 8.1E-10 72.2 5.6 25 93-117 2-26 (301)
117 2pez_A Bifunctional 3'-phospho 97.8 1.2E-05 4.1E-10 68.5 3.4 26 92-117 4-29 (179)
118 1uj2_A Uridine-cytidine kinase 97.7 4.2E-05 1.5E-09 69.1 6.4 31 88-118 17-47 (252)
119 1aky_A Adenylate kinase; ATP:A 97.7 0.00014 4.6E-09 64.1 9.2 26 93-118 4-29 (220)
120 3sr0_A Adenylate kinase; phosp 97.7 6.8E-05 2.3E-09 66.4 7.1 23 95-117 2-24 (206)
121 3lxw_A GTPase IMAP family memb 97.7 0.00033 1.1E-08 63.2 11.5 55 94-150 22-80 (247)
122 4dhe_A Probable GTP-binding pr 97.6 0.00034 1.2E-08 60.8 11.0 45 88-132 24-68 (223)
123 1svi_A GTP-binding protein YSX 97.5 0.00093 3.2E-08 56.6 12.1 29 88-116 18-46 (195)
124 1ak2_A Adenylate kinase isoenz 97.5 0.00053 1.8E-08 61.0 10.3 26 93-118 16-41 (233)
125 3r20_A Cytidylate kinase; stru 97.4 0.00048 1.6E-08 62.3 9.0 25 93-117 9-33 (233)
126 2qu8_A Putative nucleolar GTP- 97.4 0.0012 4.1E-08 58.0 11.2 60 85-147 19-83 (228)
127 3pqc_A Probable GTP-binding pr 97.4 0.0028 9.4E-08 53.3 13.1 27 91-117 21-47 (195)
128 1m8p_A Sulfate adenylyltransfe 97.3 0.00044 1.5E-08 70.4 8.4 152 92-266 395-566 (573)
129 3cr8_A Sulfate adenylyltranfer 97.3 0.0007 2.4E-08 68.6 9.3 26 92-117 368-393 (552)
130 3iev_A GTP-binding protein ERA 97.2 0.0007 2.4E-08 63.2 8.3 54 94-148 11-67 (308)
131 4f4c_A Multidrug resistance pr 97.2 6.5E-05 2.2E-09 83.4 1.4 79 92-183 1104-1193(1321)
132 3nh6_A ATP-binding cassette SU 97.2 8.9E-05 3E-09 69.8 2.1 28 91-118 78-105 (306)
133 3hjn_A DTMP kinase, thymidylat 97.2 0.0015 5E-08 57.2 9.6 158 95-266 2-191 (197)
134 2gj8_A MNME, tRNA modification 97.2 0.00034 1.2E-08 58.9 5.0 52 94-146 5-58 (172)
135 2lkc_A Translation initiation 97.2 0.001 3.5E-08 55.2 7.8 53 93-147 8-62 (178)
136 1xjc_A MOBB protein homolog; s 97.1 0.00017 6E-09 62.1 2.8 50 94-144 5-57 (169)
137 2wji_A Ferrous iron transport 97.1 0.00041 1.4E-08 57.8 4.3 38 94-133 4-41 (165)
138 4dey_A Voltage-dependent L-typ 97.1 0.00027 9.3E-09 67.2 3.4 36 282-317 286-321 (337)
139 2dyk_A GTP-binding protein; GT 97.0 0.00046 1.6E-08 56.3 4.2 38 94-132 2-39 (161)
140 4f4c_A Multidrug resistance pr 97.0 0.00014 4.8E-09 80.8 1.2 79 92-183 443-530 (1321)
141 2axn_A 6-phosphofructo-2-kinas 97.0 0.002 6.8E-08 64.7 9.2 26 92-117 34-59 (520)
142 2hjg_A GTP-binding protein ENG 97.0 0.0068 2.3E-07 59.1 12.7 56 94-150 176-233 (436)
143 3uie_A Adenylyl-sulfate kinase 97.0 0.00046 1.6E-08 59.8 3.7 27 91-117 23-49 (200)
144 3cph_A RAS-related protein SEC 97.0 0.0058 2E-07 52.3 10.7 23 94-116 21-43 (213)
145 4dcu_A GTP-binding protein ENG 96.9 0.0077 2.6E-07 59.1 12.9 163 93-269 195-372 (456)
146 3bc1_A RAS-related protein RAB 96.9 0.0047 1.6E-07 51.6 9.7 23 94-116 12-34 (195)
147 3b5x_A Lipid A export ATP-bind 96.9 0.0005 1.7E-08 69.8 4.2 27 92-118 368-394 (582)
148 1kgd_A CASK, peripheral plasma 96.9 0.00051 1.7E-08 58.7 3.5 37 282-318 144-180 (180)
149 3tif_A Uncharacterized ABC tra 96.9 0.00057 1.9E-08 61.5 4.0 28 91-118 29-56 (235)
150 2atv_A RERG, RAS-like estrogen 96.9 0.022 7.5E-07 48.2 13.7 23 94-116 29-51 (196)
151 3asz_A Uridine kinase; cytidin 96.9 0.0004 1.4E-08 60.3 2.6 27 92-118 5-31 (211)
152 2ce2_X GTPase HRAS; signaling 96.9 0.019 6.7E-07 46.2 12.7 22 95-116 5-26 (166)
153 4a9a_A Ribosome-interacting GT 96.8 0.0012 4.1E-08 63.8 5.7 54 95-150 74-129 (376)
154 4i1u_A Dephospho-COA kinase; s 96.8 0.0011 3.9E-08 58.9 5.1 27 241-267 174-202 (210)
155 4dsu_A GTPase KRAS, isoform 2B 96.8 0.0071 2.4E-07 50.4 9.9 22 95-116 6-27 (189)
156 3c8u_A Fructokinase; YP_612366 96.8 0.0006 2E-08 59.6 3.1 27 92-118 21-47 (208)
157 3clv_A RAB5 protein, putative; 96.8 0.059 2E-06 44.9 15.6 22 95-116 9-30 (208)
158 3kkq_A RAS-related protein M-R 96.8 0.016 5.4E-07 48.3 11.8 22 95-116 20-41 (183)
159 1cke_A CK, MSSA, protein (cyti 96.8 0.00067 2.3E-08 59.4 3.3 24 94-117 6-29 (227)
160 3tkl_A RAS-related protein RAB 96.8 0.015 5E-07 48.9 11.6 22 95-116 18-39 (196)
161 1udx_A The GTP-binding protein 96.8 0.0047 1.6E-07 60.4 9.6 40 94-135 158-197 (416)
162 4g1u_C Hemin import ATP-bindin 96.8 0.00096 3.3E-08 61.3 4.4 27 92-118 36-62 (266)
163 1ex7_A Guanylate kinase; subst 96.8 0.001 3.5E-08 58.0 4.3 125 168-315 49-183 (186)
164 3dz8_A RAS-related protein RAB 96.8 0.013 4.3E-07 49.6 11.1 23 95-117 25-47 (191)
165 3b1v_A Ferrous iron uptake tra 96.7 0.00089 3.1E-08 61.6 4.0 51 94-146 4-55 (272)
166 1dek_A Deoxynucleoside monopho 96.7 0.0067 2.3E-07 55.0 9.7 69 184-266 169-240 (241)
167 2bbw_A Adenylate kinase 4, AK4 96.7 0.00076 2.6E-08 60.4 3.4 25 93-117 27-51 (246)
168 2wjg_A FEOB, ferrous iron tran 96.7 0.00073 2.5E-08 56.9 3.0 23 94-116 8-30 (188)
169 2yv5_A YJEQ protein; hydrolase 96.7 0.0011 3.9E-08 61.7 4.5 33 92-126 164-196 (302)
170 1lnz_A SPO0B-associated GTP-bi 96.7 0.0043 1.5E-07 59.0 8.6 39 95-135 160-198 (342)
171 3gfo_A Cobalt import ATP-bindi 96.7 0.001 3.4E-08 61.5 3.9 27 92-118 33-59 (275)
172 2qtf_A Protein HFLX, GTP-bindi 96.7 0.0012 4.1E-08 63.4 4.5 52 94-147 180-233 (364)
173 4gp7_A Metallophosphoesterase; 96.7 0.00073 2.5E-08 57.4 2.7 23 92-114 8-30 (171)
174 2ged_A SR-beta, signal recogni 96.7 0.022 7.6E-07 47.8 12.0 25 93-117 48-72 (193)
175 3b60_A Lipid A export ATP-bind 96.7 0.00053 1.8E-08 69.6 2.0 27 92-118 368-394 (582)
176 3con_A GTPase NRAS; structural 96.7 0.015 5.1E-07 48.8 10.8 22 95-116 23-44 (190)
177 1mky_A Probable GTP-binding pr 96.6 0.0021 7.2E-08 62.9 6.1 56 94-150 2-59 (439)
178 1mv5_A LMRA, multidrug resista 96.6 0.0012 4.3E-08 59.5 4.1 27 92-118 27-53 (243)
179 2a9k_A RAS-related protein RAL 96.6 0.043 1.5E-06 45.3 13.4 23 94-116 19-41 (187)
180 3qf4_A ABC transporter, ATP-bi 96.6 0.00034 1.2E-08 71.3 0.1 64 92-168 368-436 (587)
181 1z0j_A RAB-22, RAS-related pro 96.6 0.0016 5.6E-08 53.3 4.3 23 95-117 8-30 (170)
182 2ed1_A 130 kDa phosphatidylino 96.6 0.0007 2.4E-08 50.0 1.8 32 1-32 34-65 (76)
183 1xzp_A Probable tRNA modificat 96.6 0.0038 1.3E-07 62.2 7.6 56 94-150 244-301 (482)
184 3syl_A Protein CBBX; photosynt 96.6 0.0018 6.2E-08 59.3 5.0 26 92-117 66-91 (309)
185 4a82_A Cystic fibrosis transme 96.6 0.00026 9E-09 71.9 -0.9 28 91-118 365-392 (578)
186 2erx_A GTP-binding protein DI- 96.6 0.0012 4.3E-08 54.0 3.3 22 95-116 5-26 (172)
187 1xwi_A SKD1 protein; VPS4B, AA 96.6 0.005 1.7E-07 57.7 7.9 25 93-117 45-69 (322)
188 3ihw_A Centg3; RAS, centaurin, 96.6 0.063 2.2E-06 45.2 14.2 22 95-116 22-43 (184)
189 3t15_A Ribulose bisphosphate c 96.6 0.0015 5.2E-08 60.4 4.2 25 93-117 36-60 (293)
190 1ek0_A Protein (GTP-binding pr 96.5 0.0019 6.5E-08 52.8 4.3 23 95-117 5-27 (170)
191 2nzj_A GTP-binding protein REM 96.5 0.0013 4.5E-08 54.3 3.3 22 95-116 6-27 (175)
192 3t1o_A Gliding protein MGLA; G 96.5 0.0025 8.4E-08 53.6 5.0 26 95-120 16-41 (198)
193 3tui_C Methionine import ATP-b 96.5 0.0014 4.6E-08 63.2 3.7 28 91-118 52-79 (366)
194 1ye8_A Protein THEP1, hypothet 96.5 0.0015 5.2E-08 56.2 3.7 24 95-118 2-25 (178)
195 2hjg_A GTP-binding protein ENG 96.5 0.0022 7.4E-08 62.7 5.2 55 94-149 4-60 (436)
196 2yl4_A ATP-binding cassette SU 96.5 0.00048 1.6E-08 70.2 0.5 27 92-118 369-395 (595)
197 1r2q_A RAS-related protein RAB 96.5 0.0021 7.1E-08 52.6 4.3 22 95-116 8-29 (170)
198 3fvq_A Fe(3+) IONS import ATP- 96.5 0.0018 6.2E-08 62.1 4.5 27 92-118 29-55 (359)
199 1t9h_A YLOQ, probable GTPase E 96.5 0.00073 2.5E-08 63.5 1.6 27 92-118 172-198 (307)
200 1htw_A HI0065; nucleotide-bind 96.5 0.0018 6.2E-08 54.8 3.8 28 92-119 32-59 (158)
201 2gza_A Type IV secretion syste 96.5 0.0024 8.3E-08 61.0 5.1 28 92-119 174-201 (361)
202 4dcu_A GTP-binding protein ENG 96.5 0.0015 5.2E-08 64.2 3.7 56 93-149 23-80 (456)
203 2www_A Methylmalonic aciduria 96.5 0.00095 3.3E-08 63.6 2.2 23 94-116 75-97 (349)
204 1b07_A Protein (proto-oncogene 96.5 0.0012 4.2E-08 47.3 2.3 30 1-32 27-56 (65)
205 1oix_A RAS-related protein RAB 96.4 0.0021 7.2E-08 54.9 4.1 23 95-117 31-53 (191)
206 3rlf_A Maltose/maltodextrin im 96.4 0.0014 4.9E-08 63.4 3.3 27 92-118 28-54 (381)
207 1ega_A Protein (GTP-binding pr 96.4 0.0014 4.8E-08 61.0 3.2 54 93-147 8-63 (301)
208 3t5g_A GTP-binding protein RHE 96.4 0.0017 6E-08 54.2 3.5 24 93-116 6-29 (181)
209 3ec2_A DNA replication protein 96.4 0.0016 5.5E-08 55.1 3.3 25 93-117 38-62 (180)
210 3q72_A GTP-binding protein RAD 96.4 0.0013 4.5E-08 53.9 2.6 23 95-117 4-26 (166)
211 1nrj_B SR-beta, signal recogni 96.4 0.02 6.9E-07 49.3 10.3 25 93-117 12-36 (218)
212 3q85_A GTP-binding protein REM 96.4 0.0016 5.5E-08 53.5 3.0 22 95-116 4-25 (169)
213 2pcj_A ABC transporter, lipopr 96.4 0.0017 6E-08 57.8 3.5 27 92-118 29-55 (224)
214 3iby_A Ferrous iron transport 96.4 0.0016 5.6E-08 59.1 3.3 52 94-147 2-55 (256)
215 2f1r_A Molybdopterin-guanine d 96.4 0.0011 3.9E-08 56.8 1.9 25 94-118 3-27 (171)
216 1wf3_A GTP-binding protein; GT 96.4 0.003 1E-07 58.8 5.0 38 94-132 8-45 (301)
217 2f9l_A RAB11B, member RAS onco 96.4 0.0024 8E-08 54.8 3.9 23 95-117 7-29 (199)
218 2hup_A RAS-related protein RAB 96.3 0.032 1.1E-06 47.7 11.1 22 95-116 31-52 (201)
219 2ehv_A Hypothetical protein PH 96.3 0.0022 7.6E-08 56.5 3.7 23 92-114 29-51 (251)
220 2lx7_A GAS-7, growth arrest-sp 96.3 0.001 3.6E-08 47.3 1.2 29 1-31 28-56 (60)
221 1pui_A ENGB, probable GTP-bind 96.3 0.00096 3.3E-08 57.4 1.3 26 91-116 24-49 (210)
222 2xtp_A GTPase IMAP family memb 96.3 0.0037 1.3E-07 56.1 5.1 54 94-149 23-80 (260)
223 1u0l_A Probable GTPase ENGC; p 96.3 0.0033 1.1E-07 58.5 4.8 27 92-118 168-194 (301)
224 3sop_A Neuronal-specific septi 96.3 0.0021 7.1E-08 59.1 3.4 24 95-118 4-27 (270)
225 1jbk_A CLPB protein; beta barr 96.3 0.0027 9.1E-08 52.8 3.9 27 92-118 42-68 (195)
226 2rcn_A Probable GTPase ENGC; Y 96.3 0.003 1E-07 60.6 4.7 27 92-118 214-240 (358)
227 1b0u_A Histidine permease; ABC 96.3 0.0022 7.5E-08 58.6 3.5 27 92-118 31-57 (262)
228 1g29_1 MALK, maltose transport 96.3 0.0031 1.1E-07 60.7 4.8 27 92-118 28-54 (372)
229 2ff7_A Alpha-hemolysin translo 96.3 0.0022 7.7E-08 58.0 3.6 27 92-118 34-60 (247)
230 2d8j_A FYN-related kinase; SH3 96.3 0.003 1E-07 46.4 3.7 32 1-32 31-68 (77)
231 2cjw_A GTP-binding protein GEM 96.3 0.0036 1.2E-07 53.5 4.7 22 95-116 8-29 (192)
232 2lj0_A Sorbin and SH3 domain-c 96.3 0.0021 7.1E-08 46.4 2.6 31 1-32 30-60 (65)
233 2cbz_A Multidrug resistance-as 96.3 0.0019 6.6E-08 58.1 3.0 26 92-117 30-55 (237)
234 3ch4_B Pmkase, phosphomevalona 96.3 0.03 1E-06 49.4 10.6 28 242-269 164-192 (202)
235 4b4t_K 26S protease regulatory 96.3 0.0066 2.2E-07 59.6 7.0 26 92-117 205-230 (428)
236 2pze_A Cystic fibrosis transme 96.3 0.0024 8.1E-08 57.1 3.5 27 92-118 33-59 (229)
237 2cxx_A Probable GTP-binding pr 96.3 0.0029 1E-07 53.0 3.9 22 95-116 3-24 (190)
238 3g5u_A MCG1178, multidrug resi 96.2 0.0011 3.7E-08 73.5 1.4 78 92-182 415-501 (1284)
239 3aez_A Pantothenate kinase; tr 96.2 0.0022 7.7E-08 60.2 3.4 28 91-118 88-115 (312)
240 2eyu_A Twitching motility prot 96.2 0.0016 5.3E-08 59.6 2.2 27 92-118 24-50 (261)
241 1z2a_A RAS-related protein RAB 96.2 0.0038 1.3E-07 51.0 4.4 22 95-116 7-28 (168)
242 1g6h_A High-affinity branched- 96.2 0.0025 8.6E-08 58.0 3.6 27 92-118 32-58 (257)
243 1ni3_A YCHF GTPase, YCHF GTP-b 96.2 0.0032 1.1E-07 61.1 4.5 44 92-136 19-62 (392)
244 1ji0_A ABC transporter; ATP bi 96.2 0.0026 8.8E-08 57.3 3.6 27 92-118 31-57 (240)
245 4b4t_L 26S protease subunit RP 96.2 0.0072 2.5E-07 59.5 7.0 26 92-117 214-239 (437)
246 2jeo_A Uridine-cytidine kinase 96.2 0.0024 8.3E-08 57.2 3.3 26 92-117 24-49 (245)
247 2fg5_A RAB-22B, RAS-related pr 96.2 0.0034 1.1E-07 53.4 4.1 23 95-117 25-47 (192)
248 2ixe_A Antigen peptide transpo 96.2 0.0026 8.9E-08 58.5 3.6 27 92-118 44-70 (271)
249 2ghi_A Transport protein; mult 96.2 0.0026 9E-08 58.0 3.6 27 92-118 45-71 (260)
250 2v9p_A Replication protein E1; 96.2 0.0028 9.6E-08 59.5 3.8 28 90-117 123-150 (305)
251 1x3s_A RAS-related protein RAB 96.2 0.0038 1.3E-07 52.5 4.3 23 95-117 17-39 (195)
252 3k53_A Ferrous iron transport 96.2 0.0023 7.8E-08 58.2 3.1 24 94-117 4-27 (271)
253 1cka_A C-CRK N-terminal SH3 do 96.2 0.0022 7.5E-08 44.4 2.3 30 1-32 25-54 (57)
254 2olj_A Amino acid ABC transpor 96.2 0.0027 9.2E-08 58.2 3.5 27 92-118 49-75 (263)
255 1tg0_A BBC1 protein, myosin ta 96.2 0.0018 6E-08 46.7 1.8 32 1-32 31-64 (68)
256 1oxx_K GLCV, glucose, ABC tran 96.2 0.0027 9.3E-08 60.7 3.7 27 92-118 30-56 (353)
257 4a74_A DNA repair and recombin 96.2 0.0025 8.4E-08 55.5 3.1 25 92-116 24-48 (231)
258 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.0037 1.3E-07 51.7 4.0 23 95-117 9-31 (177)
259 1sgw_A Putative ABC transporte 96.2 0.0025 8.7E-08 56.6 3.1 27 92-118 34-60 (214)
260 1odf_A YGR205W, hypothetical 3 96.2 0.0024 8.4E-08 59.3 3.1 27 92-118 30-56 (290)
261 1puj_A YLQF, conserved hypothe 96.2 0.0033 1.1E-07 58.1 4.0 39 94-133 121-159 (282)
262 1vma_A Cell division protein F 96.1 0.046 1.6E-06 51.1 11.9 27 92-118 103-129 (306)
263 3gee_A MNME, tRNA modification 96.1 0.0026 8.8E-08 63.3 3.4 56 95-151 235-292 (476)
264 3qf4_B Uncharacterized ABC tra 96.1 0.0013 4.6E-08 67.0 1.3 28 91-118 379-406 (598)
265 1vht_A Dephospho-COA kinase; s 96.1 0.0029 9.9E-08 55.2 3.4 23 93-115 4-26 (218)
266 1z0f_A RAB14, member RAS oncog 96.1 0.0045 1.5E-07 51.1 4.4 24 94-117 16-39 (179)
267 2egc_A SH3 and PX domain-conta 96.1 0.0016 5.4E-08 48.1 1.4 32 1-32 33-65 (75)
268 2qi9_C Vitamin B12 import ATP- 96.1 0.0031 1E-07 57.3 3.5 27 92-118 25-51 (249)
269 2d2e_A SUFC protein; ABC-ATPas 96.1 0.0033 1.1E-07 56.9 3.7 25 92-116 28-52 (250)
270 2p65_A Hypothetical protein PF 96.1 0.0032 1.1E-07 52.4 3.4 27 92-118 42-68 (187)
271 1z08_A RAS-related protein RAB 96.1 0.0045 1.5E-07 50.7 4.2 22 95-116 8-29 (170)
272 1sem_A SEM-5; SRC-homology 3 ( 96.1 0.0023 7.9E-08 44.4 2.1 29 1-32 26-54 (58)
273 4b4t_J 26S protease regulatory 96.1 0.0084 2.9E-07 58.4 6.7 26 92-117 181-206 (405)
274 1jo8_A ABP1P, actin binding pr 96.1 0.0032 1.1E-07 43.8 2.8 30 1-31 24-53 (58)
275 1zlm_A Osteoclast stimulating 96.1 0.0011 3.7E-08 46.2 0.3 29 1-32 27-55 (58)
276 2f7s_A C25KG, RAS-related prot 96.1 0.15 5E-06 43.7 14.1 22 95-116 27-48 (217)
277 2gf0_A GTP-binding protein DI- 96.1 0.0032 1.1E-07 53.2 3.4 23 94-116 9-31 (199)
278 1vpl_A ABC transporter, ATP-bi 96.1 0.0032 1.1E-07 57.4 3.5 28 91-118 39-66 (256)
279 1sq5_A Pantothenate kinase; P- 96.1 0.0028 9.5E-08 59.1 3.2 28 91-118 78-105 (308)
280 1r8s_A ADP-ribosylation factor 96.1 0.005 1.7E-07 50.2 4.4 23 95-117 2-24 (164)
281 2rqv_A BUD emergence protein 1 96.1 0.0009 3.1E-08 53.4 -0.2 32 1-32 29-60 (108)
282 2ihy_A ABC transporter, ATP-bi 96.1 0.0032 1.1E-07 58.2 3.5 27 92-118 46-72 (279)
283 1g16_A RAS-related protein SEC 96.1 0.004 1.4E-07 50.9 3.8 22 95-116 5-26 (170)
284 2qmh_A HPR kinase/phosphorylas 96.1 0.0028 9.6E-08 56.1 3.0 27 92-118 33-59 (205)
285 1h65_A Chloroplast outer envel 96.1 0.0053 1.8E-07 55.7 4.9 54 94-148 40-95 (270)
286 3tw8_B RAS-related protein RAB 96.1 0.0031 1.1E-07 52.1 3.1 23 94-116 10-32 (181)
287 2zej_A Dardarin, leucine-rich 96.1 0.0027 9.4E-08 53.6 2.8 22 95-116 4-25 (184)
288 3bos_A Putative DNA replicatio 96.1 0.004 1.4E-07 54.2 3.9 26 92-117 51-76 (242)
289 2nq2_C Hypothetical ABC transp 96.1 0.0034 1.2E-07 57.1 3.5 27 92-118 30-56 (253)
290 2vwf_A Growth factor receptor- 96.1 0.0026 8.9E-08 44.1 2.1 29 1-32 26-54 (58)
291 2efe_B Small GTP-binding prote 96.0 0.005 1.7E-07 51.1 4.3 22 95-116 14-35 (181)
292 1rj9_A FTSY, signal recognitio 96.0 0.0039 1.3E-07 58.3 4.0 27 92-118 101-127 (304)
293 2fn4_A P23, RAS-related protei 96.0 0.0042 1.4E-07 51.4 3.8 23 94-116 10-32 (181)
294 2kjq_A DNAA-related protein; s 96.0 0.0027 9.2E-08 52.9 2.6 26 92-117 35-60 (149)
295 1k1z_A VAV; SH3, proto-oncogen 96.0 0.0037 1.3E-07 46.2 3.0 31 1-32 42-73 (78)
296 1kao_A RAP2A; GTP-binding prot 96.0 0.0051 1.7E-07 49.9 4.2 22 95-116 5-26 (167)
297 2zu0_C Probable ATP-dependent 96.0 0.0037 1.3E-07 57.2 3.7 25 92-116 45-69 (267)
298 2yz2_A Putative ABC transporte 96.0 0.0035 1.2E-07 57.3 3.6 27 92-118 32-58 (266)
299 1uti_A GRB2-related adaptor pr 96.0 0.0027 9.2E-08 44.1 2.1 29 1-32 25-53 (58)
300 2bz8_A SH3-domain kinase bindi 96.0 0.0028 9.6E-08 44.1 2.2 29 1-32 25-53 (58)
301 1m2o_B GTP-binding protein SAR 96.0 0.0064 2.2E-07 51.7 4.9 24 94-117 24-47 (190)
302 1gl5_A Tyrosine-protein kinase 96.0 0.0031 1.1E-07 45.2 2.4 30 1-32 26-55 (67)
303 3eie_A Vacuolar protein sortin 96.0 0.013 4.5E-07 54.5 7.3 25 93-117 51-75 (322)
304 2onk_A Molybdate/tungstate ABC 96.0 0.0037 1.3E-07 56.4 3.5 25 94-118 25-49 (240)
305 3geh_A MNME, tRNA modification 96.0 0.0025 8.5E-08 63.1 2.4 55 95-150 226-282 (462)
306 2drm_A Acanthamoeba myosin IB; 96.0 0.003 1E-07 43.8 2.2 29 1-32 27-55 (58)
307 3p32_A Probable GTPase RV1496/ 96.0 0.0029 9.8E-08 60.2 2.7 26 92-117 78-103 (355)
308 1f5n_A Interferon-induced guan 96.0 0.0058 2E-07 62.4 5.1 54 94-150 39-101 (592)
309 1c1y_A RAS-related protein RAP 96.0 0.0055 1.9E-07 49.9 4.1 22 95-116 5-26 (167)
310 4b4t_M 26S protease regulatory 96.0 0.0095 3.2E-07 58.5 6.4 26 92-117 214-239 (434)
311 2bme_A RAB4A, RAS-related prot 96.0 0.0056 1.9E-07 51.1 4.2 22 95-116 12-33 (186)
312 2vp4_A Deoxynucleoside kinase; 95.9 0.0031 1.1E-07 56.0 2.7 25 92-116 19-43 (230)
313 2i3b_A HCR-ntpase, human cance 95.9 0.0042 1.4E-07 54.0 3.4 25 94-118 2-26 (189)
314 2kym_A BUD emergence protein 1 95.9 0.0026 9E-08 51.4 2.0 32 1-32 27-58 (120)
315 3i8s_A Ferrous iron transport 95.9 0.0035 1.2E-07 57.4 3.0 52 94-147 4-57 (274)
316 2qp9_X Vacuolar protein sortin 95.9 0.0092 3.1E-07 56.7 6.0 25 93-117 84-108 (355)
317 1zuy_A Myosin-5 isoform; SH3 d 95.9 0.0038 1.3E-07 43.2 2.5 31 1-32 25-55 (58)
318 1gcq_C VAV proto-oncogene; SH3 95.9 0.0032 1.1E-07 45.4 2.2 31 1-32 34-65 (70)
319 2oil_A CATX-8, RAS-related pro 95.9 0.0062 2.1E-07 51.4 4.3 23 94-116 26-48 (193)
320 3tqc_A Pantothenate kinase; bi 95.9 0.0044 1.5E-07 58.5 3.7 25 94-118 93-117 (321)
321 2gf9_A RAS-related protein RAB 95.9 0.0065 2.2E-07 51.2 4.4 23 94-116 23-45 (189)
322 2a5j_A RAS-related protein RAB 95.9 0.0056 1.9E-07 51.8 4.0 23 95-117 23-45 (191)
323 2y8e_A RAB-protein 6, GH09086P 95.9 0.0065 2.2E-07 50.1 4.3 22 95-116 16-37 (179)
324 3b85_A Phosphate starvation-in 95.9 0.0032 1.1E-07 55.6 2.5 25 92-116 21-45 (208)
325 1jal_A YCHF protein; nucleotid 95.9 0.0065 2.2E-07 58.4 4.8 41 93-135 2-42 (363)
326 2g6f_X RHO guanine nucleotide 95.9 0.003 1E-07 44.0 1.9 29 1-32 28-56 (59)
327 1ruw_A Myosin-3 isoform, MYO3; 95.9 0.0038 1.3E-07 45.0 2.5 31 1-32 27-57 (69)
328 1zx6_A YPR154WP; SH3 domain, p 95.9 0.003 1E-07 43.9 1.8 29 1-32 26-54 (58)
329 2xmf_A Myosin 1E SH3; motor pr 95.9 0.0031 1.1E-07 44.2 1.9 29 1-32 29-57 (60)
330 3cnl_A YLQF, putative uncharac 95.9 0.0054 1.8E-07 56.0 4.0 39 94-133 100-138 (262)
331 3def_A T7I23.11 protein; chlor 95.9 0.0073 2.5E-07 54.6 4.9 53 94-147 37-91 (262)
332 3h0h_A Proto-oncogene tyrosine 95.9 0.0043 1.5E-07 45.1 2.7 31 1-32 39-69 (73)
333 2bbs_A Cystic fibrosis transme 95.9 0.0045 1.6E-07 57.5 3.5 28 91-118 62-89 (290)
334 1upt_A ARL1, ADP-ribosylation 95.9 0.0076 2.6E-07 49.3 4.5 23 94-116 8-30 (171)
335 1zbd_A Rabphilin-3A; G protein 95.9 0.0064 2.2E-07 51.8 4.2 22 95-116 10-31 (203)
336 2bcg_Y Protein YP2, GTP-bindin 95.9 0.0066 2.3E-07 51.9 4.3 22 95-116 10-31 (206)
337 2ak5_A RHO guanine nucleotide 95.8 0.0036 1.2E-07 44.3 2.2 29 1-32 30-58 (64)
338 1z47_A CYSA, putative ABC-tran 95.8 0.0052 1.8E-07 58.9 3.9 27 92-118 40-66 (355)
339 4b4t_H 26S protease regulatory 95.8 0.012 4E-07 58.3 6.5 26 92-117 242-267 (467)
340 2w58_A DNAI, primosome compone 95.8 0.0058 2E-07 52.5 3.8 24 94-117 55-78 (202)
341 2yyz_A Sugar ABC transporter, 95.8 0.0053 1.8E-07 58.9 3.9 27 92-118 28-54 (359)
342 2b86_A Cytoplasmic protein NCK 95.8 0.0046 1.6E-07 44.7 2.7 29 1-32 28-56 (67)
343 2p5s_A RAS and EF-hand domain 95.8 0.0057 1.9E-07 52.2 3.7 24 94-117 29-52 (199)
344 1f6b_A SAR1; gtpases, N-termin 95.8 0.0046 1.6E-07 53.1 3.1 23 94-116 26-48 (198)
345 2it1_A 362AA long hypothetical 95.8 0.0054 1.9E-07 58.9 3.9 27 92-118 28-54 (362)
346 1lv7_A FTSH; alpha/beta domain 95.8 0.0058 2E-07 54.7 3.8 26 93-118 45-70 (257)
347 2ce7_A Cell division protein F 95.8 0.012 4.1E-07 58.5 6.4 25 93-117 49-73 (476)
348 2kgt_A Tyrosine-protein kinase 95.8 0.0048 1.6E-07 44.8 2.7 31 1-32 34-67 (72)
349 1s96_A Guanylate kinase, GMP k 95.8 0.043 1.5E-06 48.6 9.4 31 286-316 167-197 (219)
350 1v43_A Sugar-binding transport 95.8 0.0056 1.9E-07 59.0 3.9 27 92-118 36-62 (372)
351 2o9s_A Ponsin; SH3 domain, sig 95.8 0.004 1.4E-07 44.6 2.1 31 1-32 30-60 (67)
352 1lw7_A Transcriptional regulat 95.8 0.0047 1.6E-07 58.7 3.3 26 93-118 170-195 (365)
353 3d8b_A Fidgetin-like protein 1 95.8 0.021 7.2E-07 54.0 7.8 26 92-117 116-141 (357)
354 1x2k_A OSTF1, osteoclast stimu 95.8 0.0042 1.4E-07 44.6 2.2 29 1-32 31-59 (68)
355 1ue9_A Intersectin 2; beta bar 95.7 0.0051 1.7E-07 45.6 2.7 32 1-32 31-64 (80)
356 1k4u_S Phagocyte NADPH oxidase 95.7 0.0052 1.8E-07 43.3 2.6 29 1-32 29-57 (62)
357 1vg8_A RAS-related protein RAB 95.7 0.0077 2.6E-07 51.3 4.2 24 94-117 9-32 (207)
358 1fzq_A ADP-ribosylation factor 95.7 0.004 1.4E-07 52.5 2.4 23 94-116 17-39 (181)
359 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.0064 2.2E-07 52.7 3.7 25 92-116 22-46 (235)
360 3a1s_A Iron(II) transport prot 95.7 0.004 1.4E-07 56.5 2.5 37 94-132 6-42 (258)
361 1z06_A RAS-related protein RAB 95.7 0.0081 2.8E-07 50.6 4.3 23 94-116 21-43 (189)
362 2ege_A Uncharacterized protein 95.7 0.0039 1.3E-07 45.9 2.0 29 1-32 38-67 (75)
363 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.0062 2.1E-07 54.2 3.7 27 92-118 38-64 (262)
364 3llu_A RAS-related GTP-binding 95.7 0.0066 2.3E-07 51.7 3.7 27 92-118 19-45 (196)
365 1u8z_A RAS-related protein RAL 95.7 0.0075 2.6E-07 48.9 3.9 22 95-116 6-27 (168)
366 4b4t_I 26S protease regulatory 95.7 0.017 5.8E-07 56.7 7.0 26 92-117 215-240 (437)
367 3d31_A Sulfate/molybdate ABC t 95.7 0.0051 1.7E-07 58.7 3.2 27 92-118 25-51 (348)
368 2g3y_A GTP-binding protein GEM 95.7 0.0077 2.6E-07 53.0 4.2 22 95-116 39-60 (211)
369 2e87_A Hypothetical protein PH 95.7 0.0061 2.1E-07 57.8 3.8 39 93-133 167-205 (357)
370 2j05_A RAS GTPase-activating p 95.7 0.0048 1.7E-07 43.9 2.3 31 1-32 30-60 (65)
371 2ke9_A Caskin-2; SH3 domain, A 95.7 0.0047 1.6E-07 46.6 2.4 32 1-32 43-77 (83)
372 3b9q_A Chloroplast SRP recepto 95.7 0.0053 1.8E-07 57.3 3.2 27 92-118 99-125 (302)
373 1ksh_A ARF-like protein 2; sma 95.7 0.0065 2.2E-07 50.9 3.5 24 94-117 19-42 (186)
374 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.0051 1.7E-07 58.1 3.1 27 92-118 170-196 (330)
375 2ew1_A RAS-related protein RAB 95.7 0.0084 2.9E-07 51.8 4.2 23 94-116 27-49 (201)
376 1bif_A 6-phosphofructo-2-kinas 95.7 0.014 4.9E-07 57.4 6.4 25 93-117 39-63 (469)
377 2zan_A Vacuolar protein sortin 95.7 0.017 5.9E-07 56.5 7.0 25 93-117 167-191 (444)
378 1ixz_A ATP-dependent metallopr 95.6 0.0081 2.8E-07 53.6 4.2 25 94-118 50-74 (254)
379 2ew3_A SH3-containing GRB2-lik 95.6 0.0041 1.4E-07 45.0 1.8 29 1-32 27-55 (68)
380 3gd7_A Fusion complex of cysti 95.6 0.0064 2.2E-07 59.0 3.7 28 91-118 45-72 (390)
381 3h2y_A GTPase family protein; 95.6 0.0062 2.1E-07 58.4 3.5 56 93-149 160-220 (368)
382 3c5c_A RAS-like protein 12; GD 95.6 0.0079 2.7E-07 50.9 3.9 22 95-116 23-44 (187)
383 3e70_C DPA, signal recognition 95.6 0.006 2.1E-07 57.7 3.4 28 91-118 127-154 (328)
384 3b9p_A CG5977-PA, isoform A; A 95.6 0.0073 2.5E-07 55.1 3.8 26 93-118 54-79 (297)
385 3gj0_A GTP-binding nuclear pro 95.6 0.0025 8.4E-08 55.5 0.6 24 95-118 17-41 (221)
386 3oes_A GTPase rhebl1; small GT 95.6 0.0077 2.6E-07 51.4 3.7 24 94-117 25-48 (201)
387 2dby_A GTP-binding protein; GD 95.6 0.0071 2.4E-07 58.2 3.8 39 95-135 3-41 (368)
388 2gnc_A SLIT-ROBO RHO GTPase-ac 95.6 0.003 1E-07 44.3 0.9 28 1-31 30-57 (60)
389 1ky3_A GTP-binding protein YPT 95.6 0.0067 2.3E-07 50.1 3.2 24 94-117 9-32 (182)
390 3h4m_A Proteasome-activating n 95.6 0.0077 2.6E-07 54.5 3.8 27 92-118 50-76 (285)
391 1njg_A DNA polymerase III subu 95.6 0.008 2.7E-07 51.6 3.8 25 94-118 46-70 (250)
392 1w70_A Neutrophil cytosol fact 95.6 0.0047 1.6E-07 43.3 1.8 29 1-32 28-56 (60)
393 2pjz_A Hypothetical protein ST 95.6 0.0062 2.1E-07 55.7 3.2 26 93-118 30-55 (263)
394 1awj_A ITK; transferase, regul 95.6 0.0012 3.9E-08 49.0 -1.5 30 1-32 44-73 (77)
395 2gqi_A RAS GTPase-activating p 95.6 0.0041 1.4E-07 45.1 1.6 31 1-32 32-62 (71)
396 4esr_A Jouberin; AHI-1, AHI1, 95.6 0.004 1.4E-07 44.8 1.5 32 1-34 30-61 (69)
397 2il1_A RAB12; G-protein, GDP, 95.6 0.006 2.1E-07 51.8 2.8 22 95-116 28-49 (192)
398 3ngp_A Spectrin alpha chain, b 95.5 0.0055 1.9E-07 42.9 2.1 29 1-32 30-58 (62)
399 2fpe_A C-JUN-amino-terminal ki 95.5 0.0059 2E-07 42.9 2.3 31 1-32 27-57 (62)
400 3cf0_A Transitional endoplasmi 95.5 0.008 2.7E-07 55.5 3.8 27 92-118 48-74 (301)
401 3cqt_A P59-FYN, proto-oncogene 95.5 0.0069 2.4E-07 45.1 2.8 31 1-32 29-59 (79)
402 2ecz_A Sorbin and SH3 domain-c 95.5 0.0049 1.7E-07 44.4 1.9 31 1-32 31-61 (70)
403 3vfd_A Spastin; ATPase, microt 95.5 0.017 5.7E-07 55.3 6.2 25 93-117 148-172 (389)
404 1tuc_A Alpha-spectrin; capping 95.5 0.0044 1.5E-07 44.0 1.6 29 1-32 13-41 (63)
405 1uj0_A Signal transducing adap 95.5 0.0054 1.8E-07 43.2 2.0 29 1-32 29-57 (62)
406 2yuq_A Tyrosine-protein kinase 95.5 0.0061 2.1E-07 45.9 2.4 30 1-32 43-72 (85)
407 2v1q_A SLA1, cytoskeleton asse 95.5 0.0078 2.7E-07 41.9 2.8 31 1-32 26-57 (60)
408 1nij_A Hypothetical protein YJ 95.5 0.0063 2.2E-07 56.9 3.0 24 94-117 5-28 (318)
409 3n70_A Transport activator; si 95.5 0.0087 3E-07 49.1 3.5 25 93-117 24-48 (145)
410 2ocp_A DGK, deoxyguanosine kin 95.5 0.0088 3E-07 53.1 3.8 27 93-119 2-28 (241)
411 2o52_A RAS-related protein RAB 95.5 0.0075 2.6E-07 51.7 3.2 23 94-116 26-48 (200)
412 2fh5_B SR-beta, signal recogni 95.5 0.011 3.9E-07 50.7 4.4 23 94-116 8-30 (214)
413 1csk_A C-SRC SH3 domain; phosp 95.5 0.0065 2.2E-07 44.0 2.4 31 1-33 35-66 (71)
414 2ohf_A Protein OLA1, GTP-bindi 95.5 0.0064 2.2E-07 59.1 3.0 42 93-136 22-63 (396)
415 2ebp_A SAM and SH3 domain-cont 95.5 0.0078 2.7E-07 44.1 2.8 29 1-32 35-63 (73)
416 2nwm_A Vinexin; cell adhesion; 95.5 0.0061 2.1E-07 43.7 2.2 29 1-32 25-53 (65)
417 2ewv_A Twitching motility prot 95.5 0.005 1.7E-07 59.1 2.2 27 92-118 135-161 (372)
418 2cvh_A DNA repair and recombin 95.5 0.009 3.1E-07 51.5 3.7 24 92-115 19-42 (220)
419 3g5u_A MCG1178, multidrug resi 95.5 0.0033 1.1E-07 69.7 1.0 27 92-118 1058-1084(1284)
420 2hxs_A RAB-26, RAS-related pro 95.5 0.0084 2.9E-07 49.5 3.3 22 95-116 8-29 (178)
421 2chg_A Replication factor C sm 95.5 0.0088 3E-07 50.8 3.5 24 94-117 39-62 (226)
422 2eyx_A V-CRK sarcoma virus CT1 95.4 0.0051 1.7E-07 44.2 1.7 29 1-32 32-60 (67)
423 2fei_A CD2-associated protein; 95.4 0.0035 1.2E-07 45.0 0.8 29 1-32 25-53 (65)
424 2x8a_A Nuclear valosin-contain 95.4 0.0084 2.9E-07 54.9 3.5 24 95-118 46-69 (274)
425 3cf2_A TER ATPase, transitiona 95.4 0.019 6.5E-07 60.6 6.6 64 92-191 237-303 (806)
426 1oot_A Hypothetical 40.4 kDa p 95.4 0.0067 2.3E-07 42.3 2.2 28 1-31 27-56 (60)
427 2iim_A Proto-oncogene tyrosine 95.4 0.0082 2.8E-07 42.2 2.7 30 1-32 30-59 (62)
428 3p26_A Elongation factor 1 alp 95.4 0.14 4.8E-06 50.5 12.6 22 95-116 35-56 (483)
429 3ec1_A YQEH GTPase; atnos1, at 95.4 0.0077 2.6E-07 57.7 3.3 56 93-149 162-221 (369)
430 1zuu_A BZZ1 protein; SH3 domai 95.4 0.0092 3.2E-07 41.2 2.9 30 1-31 25-55 (58)
431 2dl4_A Protein STAC; SH3 domai 95.4 0.0077 2.6E-07 43.3 2.5 29 1-32 31-59 (68)
432 1wie_A RIM binding protein 2; 95.4 0.0082 2.8E-07 46.4 2.8 30 1-32 47-77 (96)
433 1iy2_A ATP-dependent metallopr 95.4 0.011 3.8E-07 53.6 4.2 25 94-118 74-98 (278)
434 2kxd_A 11-MER peptide, SH3 dom 95.4 0.0051 1.7E-07 44.9 1.6 29 1-32 23-51 (73)
435 2lcs_A NAP1-binding protein 2; 95.4 0.0056 1.9E-07 44.9 1.7 31 1-32 29-59 (73)
436 2h17_A ADP-ribosylation factor 95.4 0.011 3.9E-07 49.4 4.0 23 94-116 22-44 (181)
437 2oaw_A Spectrin alpha chain, b 95.4 0.0044 1.5E-07 43.8 1.1 32 1-32 25-61 (65)
438 3kta_A Chromosome segregation 95.4 0.011 3.6E-07 49.9 3.7 24 94-117 27-50 (182)
439 1n0w_A DNA repair protein RAD5 95.4 0.0099 3.4E-07 52.1 3.7 25 92-116 23-47 (243)
440 3a00_A Guanylate kinase, GMP k 95.4 0.0091 3.1E-07 51.0 3.3 38 278-315 146-183 (186)
441 3r7w_A Gtpase1, GTP-binding pr 95.4 0.0098 3.3E-07 55.3 3.8 37 94-131 4-40 (307)
442 2wsm_A Hydrogenase expression/ 95.4 0.0091 3.1E-07 51.7 3.4 25 93-117 30-54 (221)
443 2bov_A RAla, RAS-related prote 95.4 0.011 3.8E-07 50.1 3.9 23 94-116 15-37 (206)
444 3ulr_B SRC substrate cortactin 95.4 0.0069 2.4E-07 42.9 2.1 29 1-32 33-61 (65)
445 1yn8_A NBP2, NAP1-binding prot 95.4 0.0046 1.6E-07 42.9 1.2 31 1-32 25-55 (59)
446 4bas_A ADP-ribosylation factor 95.4 0.0063 2.2E-07 51.4 2.3 25 92-116 16-40 (199)
447 3sjy_A Translation initiation 95.4 0.51 1.7E-05 45.2 16.1 26 94-119 9-34 (403)
448 1zj6_A ADP-ribosylation factor 95.3 0.013 4.5E-07 49.2 4.3 23 94-116 17-39 (187)
449 1i07_A Epidermal growth factor 95.3 0.0036 1.2E-07 43.8 0.6 29 1-32 25-53 (60)
450 2ydl_A SH3 domain-containing k 95.3 0.0065 2.2E-07 44.1 1.9 29 1-32 26-56 (69)
451 1m7b_A RND3/RHOE small GTP-bin 95.3 0.0092 3.2E-07 50.1 3.2 22 95-116 9-30 (184)
452 2ct3_A Vinexin; SH3 domian, st 95.3 0.011 3.8E-07 42.5 3.1 31 1-32 31-61 (70)
453 2g6b_A RAS-related protein RAB 95.3 0.0099 3.4E-07 49.2 3.2 23 95-117 12-34 (180)
454 2iwr_A Centaurin gamma 1; ANK 95.3 0.0083 2.8E-07 49.8 2.7 22 95-116 9-30 (178)
455 2a28_A BZZ1 protein; SH3 domai 95.3 0.0055 1.9E-07 41.9 1.3 28 1-31 24-52 (54)
456 2qnr_A Septin-2, protein NEDD5 95.3 0.0078 2.7E-07 56.0 2.7 21 95-115 20-40 (301)
457 2og2_A Putative signal recogni 95.3 0.01 3.5E-07 56.9 3.6 27 92-118 156-182 (359)
458 2dl8_A SLIT-ROBO RHO GTPase-ac 95.3 0.0054 1.8E-07 44.6 1.3 29 1-32 33-61 (72)
459 4djt_A GTP-binding nuclear pro 95.2 0.0042 1.4E-07 53.7 0.8 22 95-116 13-34 (218)
460 2h57_A ADP-ribosylation factor 95.2 0.0096 3.3E-07 50.2 3.1 24 94-117 22-45 (190)
461 1p5z_B DCK, deoxycytidine kina 95.2 0.0067 2.3E-07 54.7 2.2 27 93-119 24-50 (263)
462 4ag1_C Fynomer; hydrolase-de n 95.2 0.0098 3.3E-07 44.8 2.8 31 1-32 30-60 (84)
463 3cpj_B GTP-binding protein YPT 95.2 0.013 4.4E-07 51.1 3.9 22 95-116 15-36 (223)
464 1l8q_A Chromosomal replication 95.2 0.009 3.1E-07 55.4 3.1 26 92-117 36-61 (324)
465 2hf9_A Probable hydrogenase ni 95.2 0.011 3.6E-07 51.4 3.4 24 94-117 39-62 (226)
466 1in4_A RUVB, holliday junction 95.2 0.01 3.6E-07 55.6 3.5 24 94-117 52-75 (334)
467 1svm_A Large T antigen; AAA+ f 95.2 0.011 3.9E-07 56.9 3.9 27 91-117 167-193 (377)
468 2vkn_A Protein SSU81; membrane 95.2 0.0076 2.6E-07 43.5 2.0 29 1-32 31-59 (70)
469 1ofh_A ATP-dependent HSL prote 95.2 0.0099 3.4E-07 54.0 3.2 27 93-119 50-76 (310)
470 1u5s_A Cytoplasmic protein NCK 95.2 0.011 3.8E-07 42.6 2.9 30 1-32 30-61 (71)
471 1mh1_A RAC1; GTP-binding, GTPa 95.2 0.011 3.7E-07 49.1 3.2 22 95-116 7-28 (186)
472 2j6f_A CD2-associated protein; 95.2 0.0073 2.5E-07 42.5 1.8 29 1-32 25-54 (62)
473 1cr0_A DNA primase/helicase; R 95.2 0.012 4E-07 53.9 3.7 26 92-117 34-59 (296)
474 1u3o_A Huntingtin-associated p 95.2 0.0054 1.9E-07 46.4 1.1 32 1-32 41-75 (82)
475 3c0c_A Endophilin-A2; endocyto 95.2 0.0074 2.5E-07 44.0 1.8 29 1-32 37-65 (73)
476 2l0a_A STAM-1, signal transduc 95.2 0.0062 2.1E-07 44.7 1.4 28 1-31 41-68 (72)
477 1wxq_A GTP-binding protein; st 95.1 0.0089 3.1E-07 57.9 2.9 39 95-135 2-40 (397)
478 3bwd_D RAC-like GTP-binding pr 95.1 0.015 5.1E-07 48.2 3.9 23 94-116 9-31 (182)
479 2dbk_A CRK-like protein; struc 95.1 0.01 3.5E-07 45.0 2.6 29 1-32 42-70 (88)
480 2pqh_A Spectrin alpha chain, b 95.1 0.0075 2.6E-07 44.8 1.8 29 1-32 26-54 (80)
481 3hws_A ATP-dependent CLP prote 95.1 0.013 4.5E-07 55.3 4.0 26 93-118 51-76 (363)
482 2dl3_A Sorbin and SH3 domain-c 95.1 0.01 3.6E-07 42.4 2.5 29 1-32 31-59 (68)
483 1wyx_A CRK-associated substrat 95.1 0.009 3.1E-07 42.9 2.1 29 1-32 27-58 (69)
484 2jw4_A Cytoplasmic protein NCK 95.1 0.012 4.1E-07 42.8 2.8 29 1-32 31-59 (72)
485 3jvv_A Twitching mobility prot 95.1 0.011 3.8E-07 56.5 3.4 26 93-118 123-148 (356)
486 2q3h_A RAS homolog gene family 95.1 0.011 3.9E-07 50.1 3.1 23 94-116 21-43 (201)
487 2ysq_A RHO guanine nucleotide 95.1 0.0094 3.2E-07 44.4 2.2 29 1-32 34-62 (81)
488 2qm8_A GTPase/ATPase; G protei 95.1 0.011 3.7E-07 55.9 3.2 26 92-117 54-79 (337)
489 3ozx_A RNAse L inhibitor; ATP 95.1 0.011 3.9E-07 59.5 3.5 29 90-118 22-50 (538)
490 2qag_B Septin-6, protein NEDD5 95.1 0.0099 3.4E-07 58.3 2.9 25 92-116 39-65 (427)
491 1nm7_A Peroxisomal membrane pr 95.1 0.0081 2.8E-07 43.8 1.8 30 1-32 32-66 (69)
492 2yt6_A Adult MALE urinary blad 95.1 0.014 5E-07 45.7 3.4 31 1-32 51-81 (109)
493 2jt4_A Cytoskeleton assembly c 95.1 0.013 4.3E-07 42.3 2.8 31 1-32 30-61 (71)
494 2m0y_A Dedicator of cytokinesi 95.1 0.016 5.4E-07 42.1 3.4 31 1-32 35-65 (74)
495 1x2q_A Signal transducing adap 95.0 0.011 3.8E-07 44.7 2.6 29 1-32 41-69 (88)
496 1ujy_A RHO guanine nucleotide 95.0 0.0097 3.3E-07 43.7 2.2 29 1-32 34-62 (76)
497 2djq_A SH3 domain containing r 95.0 0.01 3.5E-07 42.5 2.2 29 1-32 31-59 (68)
498 1moz_A ARL1, ADP-ribosylation 95.0 0.0098 3.3E-07 49.5 2.4 23 93-115 18-40 (183)
499 2dil_A Proline-serine-threonin 95.0 0.0068 2.3E-07 43.6 1.3 29 1-32 32-60 (69)
500 2csi_A RIM-BP2, RIM binding pr 95.0 0.0062 2.1E-07 44.8 1.0 29 1-32 38-67 (76)
No 1
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=100.00 E-value=2.7e-67 Score=496.34 Aligned_cols=245 Identities=28% Similarity=0.541 Sum_probs=214.0
Q ss_pred CcEEEeCCCCCceeEEeCC---CCCCceeeCChhHHHHHHhhccccccccccccccccccccccccchhhhccccccCCc
Q psy933 1 MFQIISKDDHNWWQARKDN---VAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQL 77 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~---~~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~~~~~~~~~~~ 77 (330)
||||+|++|++|||||+++ .+..+|||||+.++|+|...+. + ...+.+
T Consensus 34 iL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~e~~~~~~~------------------~-----------~~~~~~ 84 (292)
T 3tvt_A 34 ILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARD------------------R-----------SVKSEE 84 (292)
T ss_dssp EEEEEECCSSSEEEECCCCC--------EEECHHHHHHHHHC--------------------------------------
T ss_pred EEEEeecCCCCeEEEEEeCCCCCccceeEEeChHHHHHHHHHhh------------------c-----------cccccc
Confidence 7999999999999999963 3466999999999998753210 0 011234
Q ss_pred cccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhhHHhc
Q psy933 78 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAA 156 (330)
Q Consensus 78 ~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~~i~~ 156 (330)
++++||+|++++++.+|||||+||+ |+||+++|++.+|+.|..+|+||||+||+||+||+||||| ++++|++++++
T Consensus 85 ~~~~YE~V~~~~~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~ 161 (292)
T 3tvt_A 85 NVLSYEAVQRLSINYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQN 161 (292)
T ss_dssp -CCCEEEEEEEECSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHT
T ss_pred cccchheEEeccCCCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhc
Confidence 6789999999999999999999995 9999999999999999999999999999999999999999 88999999999
Q ss_pred cceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC-----chHHHHHHHH
Q psy933 157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD-----YDGSLEKLAK 231 (330)
Q Consensus 157 ~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~-----~~e~~~rl~~ 231 (330)
|.||||++++||+|||++++|++++++|++||||++++|+++|+...++|++|||+|||++.|++ .+++.+++.+
T Consensus 162 ~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~ 241 (292)
T 3tvt_A 162 HLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYE 241 (292)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHH
T ss_pred CceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998752 3455666776
Q ss_pred HHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy933 232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS 277 (330)
Q Consensus 232 ~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~s 277 (330)
.+.+++++|+|+||+||+|||+++|+++|+++|..++.+|+|||+.
T Consensus 242 r~~k~e~e~~~~fD~vIvNddle~a~~~l~~iI~~e~~~~~WVP~~ 287 (292)
T 3tvt_A 242 RAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSK 287 (292)
T ss_dssp HHHHHHHHHTTTCSEEECCSSHHHHHHHHHHHHHHHTCSEEEEEC-
T ss_pred HHHHHHHhhhhhCCEEEECcCHHHHHHHHHHHHHHhhCCCeEecCc
Confidence 7777888899999999999999999999999999999999999975
No 2
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=100.00 E-value=2.8e-60 Score=449.44 Aligned_cols=254 Identities=28% Similarity=0.543 Sum_probs=222.0
Q ss_pred CcEEEeCCCCCceeEEeCCCC---CCceeeCChhHHHHHHhhccccccccccccccccccccccccchhhhccccccCCc
Q psy933 1 MFQIISKDDHNWWQARKDNVA---GSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQL 77 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~---~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~~~~~~~~~~~ 77 (330)
||+|++++|++||||++.+.+ +..|+|||..++|++...+.. . ..|. ++.+..++..
T Consensus 30 il~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~~~~~~~~----~-----~~~~-----------~~~~~~~~~~ 89 (295)
T 1kjw_A 30 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLK----A-----KDWG-----------SSSGSQGRED 89 (295)
T ss_dssp EEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHHHHTSCC------------CC-----------SCCSSCCCCC
T ss_pred EEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHHHHHhhhc----c-----cccC-----------cccccccccC
Confidence 689999999999999996533 589999999999987543210 0 0111 1112344566
Q ss_pred cccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhhHHhc
Q psy933 78 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAA 156 (330)
Q Consensus 78 ~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~~i~~ 156 (330)
.+++||+|.++++..+|+|||+|| ||+||+++|++.+|+.|..+|+||||+||+||++|+||||| |+++|++++++
T Consensus 90 ~~~~Ye~V~~~~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~ 166 (295)
T 1kjw_A 90 SVLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQA 166 (295)
T ss_dssp CCCCEEEEEEEECCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHT
T ss_pred CCCCcceeeeecCCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHC
Confidence 789999999999888999999999 69999999999999899999999999999999999999999 99999999999
Q ss_pred cceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc-----CchHHHHHHHH
Q psy933 157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS-----DYDGSLEKLAK 231 (330)
Q Consensus 157 ~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~-----~~~e~~~rl~~ 231 (330)
|.|+||++++||+|||++++|++++++|++||||++++|+++++...+.|++|||.|||+++|+ .++++++++.+
T Consensus 167 g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~L~~R~t~~~i~~rl~ 246 (295)
T 1kjw_A 167 HKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFD 246 (295)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHHHCTTSCHHHHHHHHH
T ss_pred CCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHHHHhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998875 34566765555
Q ss_pred HHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy933 232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS 277 (330)
Q Consensus 232 ~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~s 277 (330)
.+.+++..+.+.||++|+|||+++|+++|.++|..++++|||||++
T Consensus 247 ~a~~~e~~~~~~fd~vivNd~le~a~~~l~~ii~~~~~~~~Wvp~~ 292 (295)
T 1kjw_A 247 RATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPAR 292 (295)
T ss_dssp HHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred HHHHHHHhccccCeEEEECcCHHHHHHHHHHHHHhccCCCEEeeCC
Confidence 5555677789999999999999999999999999999999999976
No 3
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=100.00 E-value=2.3e-55 Score=460.25 Aligned_cols=254 Identities=28% Similarity=0.553 Sum_probs=223.2
Q ss_pred CcEEEeCCCCCceeEEeCCC---CCCceeeCChhHHHHHHhhccccccccccccccccccccccccchhhhccccccCCc
Q psy933 1 MFQIISKDDHNWWQARKDNV---AGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQL 77 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~---~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~~~~~~~~~~~ 77 (330)
||||++++|++||||++.+. ...+|||||..++|++...+.. . ..|. .+.+..++..
T Consensus 456 il~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~~~~~~~~----~-----~~~~-----------~~~~~~~~~~ 515 (721)
T 2xkx_A 456 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLK----A-----KDWG-----------SSSGSQGRED 515 (721)
T ss_pred EEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHHHHhhhcc----c-----cccc-----------Ccchhhcccc
Confidence 69999999999999999643 3678999999999986532110 0 0111 1112345667
Q ss_pred cccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEe-cccchhhHHhc
Q psy933 78 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFI-SHDEMMSDIAA 156 (330)
Q Consensus 78 ~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fv-s~~~f~~~i~~ 156 (330)
.+++||+|.++++..+|+|||+||+ |+||+++|++.+|+.|.++++||||+||+||++|+||||| |+++|++++++
T Consensus 516 ~~~~Ye~V~~~~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~ 592 (721)
T 2xkx_A 516 SVLSYETVTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRA 592 (721)
T ss_pred cCCCceeeecccCCCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhc
Confidence 7899999999999899999999995 9999999999999999999999999999999999999999 99999999999
Q ss_pred cceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC-----chHHHHHHHH
Q psy933 157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD-----YDGSLEKLAK 231 (330)
Q Consensus 157 ~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~-----~~e~~~rl~~ 231 (330)
|.|+||++++||+|||++++|++++++|++||||++++|+++|+...++|++|||+|||+++|++ +++++++..+
T Consensus 593 ~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~l~~R~t~~~~~~rl~ 672 (721)
T 2xkx_A 593 HKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFD 672 (721)
T ss_pred CCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988753 4566766555
Q ss_pred HHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcCCCcccccc
Q psy933 232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS 277 (330)
Q Consensus 232 ~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~~~~WvP~s 277 (330)
++.+++..|.++||++|+|||+++|+++|+++|..++++|||||++
T Consensus 673 ~a~~~e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~~~~~~Wvp~~ 718 (721)
T 2xkx_A 673 RATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPAR 718 (721)
T ss_pred HHHHHHHhccccCcEEEECcCHHHHHHHHHHHHHhccCCcEEeecc
Confidence 5666777899999999999999999999999999999999999975
No 4
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=100.00 E-value=6.3e-54 Score=427.24 Aligned_cols=248 Identities=22% Similarity=0.305 Sum_probs=182.5
Q ss_pred CcEEEeC---CCCCceeEEeCCCCC---CceeeCChhHHHHHHhhccccccccccccccccc----cccccccchhhhcc
Q psy933 1 MFQIISK---DDHNWWQARKDNVAG---SAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFG----RKKKLYKDKYLAKH 70 (330)
Q Consensus 1 iL~v~~~---~D~~WWQA~~~~~~~---~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~----rk~k~~~~~~~~~~ 70 (330)
||||+|+ +|++||||++.+.++ .+|+|||+.++|++.+++..........++++++ |..|+.+.+...+.
T Consensus 122 IL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~~~~~~~~~~~f~~~~~~r~~kk~~~~~~~~~ 201 (468)
T 3shw_A 122 VFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDL 201 (468)
T ss_dssp EEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHC--------------------------------
T ss_pred EEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHHHHHHHhhhhhccccccccchhhhccccccccccccchhhc
Confidence 7999999 799999999965443 7999999999999876644311111111122211 01111111223345
Q ss_pred ccccCCccccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccch
Q psy933 71 NAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEM 150 (330)
Q Consensus 71 ~~~~~~~~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f 150 (330)
++.++..++++||+|++++++.+|||||+||||+| |+++|++.+|+.|..+ ||| ||+||++|++|||
T Consensus 202 ~~~~~~~~~~~YEeV~~~~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s~---~TR-pR~gE~dG~~Y~F------ 268 (468)
T 3shw_A 202 SAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADV---AREKLAREEPDIYQIA---KSE-PRDAGTDQRSSGI------ 268 (468)
T ss_dssp -----CCCCCSEEEEEEECCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEEC---CCB-C----------CB------
T ss_pred ccccccccCCCcceeEcccCCCCCEEEEECCCHHH---HHHHHHHhCCCceeee---cCC-CCCcccccccCCc------
Confidence 67778888999999999999999999999999999 9999999999988764 699 9999999999999
Q ss_pred hhHHhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------Cc
Q psy933 151 MSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DY 222 (330)
Q Consensus 151 ~~~i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~ 222 (330)
|++++|++++++|++|||||+++|+++|+...++|++|||+|||+++|+ ++
T Consensus 269 ---------------------Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~s 327 (468)
T 3shw_A 269 ---------------------IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPES 327 (468)
T ss_dssp ---------------------CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTC
T ss_pred ---------------------ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCC
Confidence 7999999999999999999999999999999999999999999999986 24
Q ss_pred hHHHHHHHHHHHHHHhhccccceEEEecCCH-HHHHHHHHHHHHHhcCCCccccccccccc
Q psy933 223 DGSLEKLAKESDILKSAYEHFFDLTVVNNDI-EETIGILEKAIEELHTTPQWIPVSWLAKE 282 (330)
Q Consensus 223 ~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dl-e~a~~~L~~~i~~~~~~~~WvP~sw~~~~ 282 (330)
++.++++.+++.+++.+|.|+||++|+|||+ ++||++|+++|..++++|||||++|+...
T Consensus 328 ee~~~r~~~~a~~~e~~~~~~fD~vIvNddl~d~a~~~L~~ii~~~~~~~~WvP~~~~~~~ 388 (468)
T 3shw_A 328 RKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKADGA 388 (468)
T ss_dssp CCCHHHHHHHHHHHHHHHGGGCSEEEECBTTBCHHHHHHHHHHHHHHTSCEEEEC------
T ss_pred HHHHHHHHHHHHHHHHhhhccCCEEEECCCcHHHHHHHHHHHHHHhcCCCEEeCCcccccc
Confidence 5677888888888999999999999999999 59999999999999999999999999765
No 5
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=100.00 E-value=4.1e-52 Score=407.53 Aligned_cols=241 Identities=24% Similarity=0.328 Sum_probs=187.6
Q ss_pred CcEEEeC---CCCCceeEEeCCCC---CCceeeCChhHHHHHHhhcccc-ccccc---ccccc-ccccccc-cccchhhh
Q psy933 1 MFQIISK---DDHNWWQARKDNVA---GSAGLIPSPELQEWRTACSTID-KTKHE---QVNCS-IFGRKKK-LYKDKYLA 68 (330)
Q Consensus 1 iL~v~~~---~D~~WWQA~~~~~~---~~~GlIPS~~~~e~r~~~~~~~-~~~~~---~~~~~-~~~rk~k-~~~~~~~~ 68 (330)
||||+++ +|++||||++.+.. ..+|+|||+.++|++.+++... ..... ...|. .++++++ .++. ..
T Consensus 130 il~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~--~~ 207 (391)
T 3tsz_A 130 VFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKS--RE 207 (391)
T ss_dssp EEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHHHHSSCCC--------------------------------
T ss_pred EEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHHHHHHHhhhccccccccccccccccccccccccccc--cc
Confidence 6999999 79999999996543 3689999999999987664321 11111 11111 0111111 1111 12
Q ss_pred ccccccCCccccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEeccc
Q psy933 69 KHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHD 148 (330)
Q Consensus 69 ~~~~~~~~~~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~ 148 (330)
..+..++..++++||+|++++++.+|||||+|||| +||+++|++.+|+.|.. |||+||+||+||++||||
T Consensus 208 ~~~~~~~~~~~~~YE~V~~~~~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~----~tr~pR~gE~dG~~Y~Fv--- 277 (391)
T 3tsz_A 208 DLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIA---DVAREKLAREEPDIYQI----AKSEPRDAGTDQRSSGII--- 277 (391)
T ss_dssp ---------CCCSEEEEEEEECSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE----CCCCCCCSSSCCC--CCC---
T ss_pred ccccccccccCCCcceEECcCCCCCCEEEEECCCH---HHHHHHHHhhCcccccc----ccCCCCCcccCCccCCcC---
Confidence 23445667789999999999998999999999997 89999999999998865 689999999999999997
Q ss_pred chhhHHhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------
Q psy933 149 EMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS-------- 220 (330)
Q Consensus 149 ~f~~~i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~-------- 220 (330)
++++|++++++|++|||||+++|+++|+...++|++|||+|||+++|+
T Consensus 278 ------------------------~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~ 333 (391)
T 3tsz_A 278 ------------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCP 333 (391)
T ss_dssp ------------------------CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCS
T ss_pred ------------------------cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCC
Confidence 689999999999999999999999999999999999999999999987
Q ss_pred CchHHHHHHHHHHHHHHhhccccceEEEecCCHH-HHHHHHHHHHHHhcCCCcccccc
Q psy933 221 DYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIE-ETIGILEKAIEELHTTPQWIPVS 277 (330)
Q Consensus 221 ~~~e~~~rl~~~~~~ie~~~~~~fD~vI~N~dle-~a~~~L~~~i~~~~~~~~WvP~s 277 (330)
++++.++++.+++.++|.+|.|+||++|+|||++ .||++|+++|..++++|||||..
T Consensus 334 ~s~e~~~~~~~~a~~~e~~~~~~fd~vivNd~l~~~a~~~l~~ii~~~~~~~~Wvp~~ 391 (391)
T 3tsz_A 334 ESRKSARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEG 391 (391)
T ss_dssp SCCCCHHHHHHHHHHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHHHHHSEEEEEC-
T ss_pred CCHHHHHHHHHHHHHHHHhccccCcEEEECCCcHHHHHHHHHHHHHHhcCCCeeccCC
Confidence 3455678888888889999999999999999998 79999999999999999999963
No 6
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=100.00 E-value=2.2e-48 Score=345.03 Aligned_cols=173 Identities=29% Similarity=0.574 Sum_probs=161.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTK 173 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts 173 (330)
|||||+|||||||+||+++|++.+|+.|..+++||||+||+||++|+||||||+++|++++++|.|+||++++||+|||+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeEEEEeCHHHHHHHHhc-CCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhcccc
Q psy933 174 LETIRRIHQEGKIAILDVEPQALKILRTG-EFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYEHF 243 (330)
Q Consensus 174 ~~~i~~v~~~gk~~vldv~~~~v~~L~~~-~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~~~ 243 (330)
+++|++++++|++||++++++|++++++. .+.+++|||.|||.++|+ ++++.+ +||..+..+|+..+.+.
T Consensus 82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~~~~ 161 (186)
T 1ex7_A 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGA 161 (186)
T ss_dssp HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccC
Confidence 99999999999999999999999999985 568999999999999885 345666 57888888887666788
Q ss_pred ceEEEecCCHHHHHHHHHHHHHH
Q psy933 244 FDLTVVNNDIEETIGILEKAIEE 266 (330)
Q Consensus 244 fD~vI~N~dle~a~~~L~~~i~~ 266 (330)
||++|+|||+++|+++|.++|..
T Consensus 162 fD~vIvNddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 162 HDKVIVNDDLDKAYKELKDFIFA 184 (186)
T ss_dssp SSEEEECSSHHHHHHHHHHHHTT
T ss_pred CcEEEECcCHHHHHHHHHHHHHh
Confidence 99999999999999999999863
No 7
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=100.00 E-value=9.4e-48 Score=364.09 Aligned_cols=242 Identities=21% Similarity=0.312 Sum_probs=175.5
Q ss_pred CcEEEeCCCCC---------ceeEEeCCCC---CCceeeCChhHHHHHHhhcccccc------c--cccccccccccccc
Q psy933 1 MFQIISKDDHN---------WWQARKDNVA---GSAGLIPSPELQEWRTACSTIDKT------K--HEQVNCSIFGRKKK 60 (330)
Q Consensus 1 iL~v~~~~D~~---------WWQA~~~~~~---~~~GlIPS~~~~e~r~~~~~~~~~------~--~~~~~~~~~~rk~k 60 (330)
||||+++.|++ ||||++.+.. ...|+|||+.++|++...+..... + ....+.++|++|.+
T Consensus 28 il~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~aeq~~~~~~~~~~~~~~~~~~~~~~~r~~f~~~~~~ 107 (308)
T 3kfv_A 28 VFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGL 107 (308)
T ss_dssp EEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHCC-----------------------
T ss_pred EEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHHHHHHHHHhhhhcccccccccccccccchhhhccc
Confidence 69999999988 9999996543 478999999999987554322111 0 01122233433221
Q ss_pred c---ccchhhhccccc--cCCccccCceeeecccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933 61 L---YKDKYLAKHNAV--FDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD 135 (330)
Q Consensus 61 ~---~~~~~~~~~~~~--~~~~~~~~Ye~V~~~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~ 135 (330)
. ++..+....... .+..++++||+|++++++.+|||||+|| ||++|+++|++.+|++|++++|.
T Consensus 108 r~~~k~~~~~~~~d~~~~~~~~~~~~YE~V~~~~~~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~-------- 176 (308)
T 3kfv_A 108 RRGAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV-------- 176 (308)
T ss_dssp ------------CCCHHHHHHHTCCSEEEEEEEECSSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC--------
T ss_pred cccccccccccccccccccccCCCcCchheeccccCCCCeEEEeCc---cHHHHHHHHHHhCcccccccccc--------
Confidence 1 111111111100 1223578999999999999999999999 59999999999999999999882
Q ss_pred ccCCeeEEEecccchhhHHhccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCc
Q psy933 136 EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215 (330)
Q Consensus 136 E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps 215 (330)
.+++.+|+|| ++++|++++++|++|||||+++|+++|+...++|++|||.|||
T Consensus 177 ---------------~r~i~~~~fi------------s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS 229 (308)
T 3kfv_A 177 ---------------SRTDSPSKII------------KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPES 229 (308)
T ss_dssp -----------------------CC------------CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESC
T ss_pred ---------------cccccCCCee------------cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCC
Confidence 1125677776 8999999999999999999999999999999999999999999
Q ss_pred ccccc--------CchHHHHHHHHHHHHHHhhccccceEEE-ecCCHHHHHHHHHHHHHHhcCCCccccccccc
Q psy933 216 LQNLS--------DYDGSLEKLAKESDILKSAYEHFFDLTV-VNNDIEETIGILEKAIEELHTTPQWIPVSWLA 280 (330)
Q Consensus 216 ~~~l~--------~~~e~~~rl~~~~~~ie~~~~~~fD~vI-~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~ 280 (330)
+++|+ ++++.++|+.+++.++|..|+++||++| +|||+++||++|+++|..++++|||||++.+.
T Consensus 230 ~eeL~~rr~R~~~esee~~~r~~~aa~eiE~~~~~~FD~vI~VNDdle~A~~~L~~iI~~~~~epqWvp~~~~~ 303 (308)
T 3kfv_A 230 RPALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAEDQLH 303 (308)
T ss_dssp HHHHHHHHHHHSTTCCCCHHHHHHHHHHHHHHHGGGCSEEEEECSSSTHHHHHHHHHHHHHTTSEEEEEC----
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhhccCcEEEEcCCCHHHHHHHHHHHHHHhcCCCeEeehhhhh
Confidence 99986 2445678888888889889999999999 99999999999999999999999999998763
No 8
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.5e-47 Score=341.00 Aligned_cols=184 Identities=51% Similarity=0.921 Sum_probs=167.5
Q ss_pred ccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC
Q psy933 88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED 167 (330)
Q Consensus 88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g 167 (330)
+|++.+++|+|+||||||||||+++|++.+|+.|..++++|||+||+||++|++|+|+|.++|.+++.++.|+||+++.|
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~ 93 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQG 93 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhc
Confidence 56677899999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhccccceEE
Q psy933 168 AMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLT 247 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~v 247 (330)
|+|||+.++|++++++|++||||++++|++++++..+.|++|||.|||++... +..+++.++.++++..|.+.||++
T Consensus 94 n~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~~~~---e~~~~i~~r~~~~~~~~~~~fd~v 170 (197)
T 3ney_A 94 NMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQGTQT---EALQQLQKDSEAIRSQYAHYFDLS 170 (197)
T ss_dssp EEEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBSSCC---HHHHHHHHHHHHHHHHHGGGCSEE
T ss_pred eecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCccccc---hHHHHHHHHHHHHHHhhccCCCEE
Confidence 99999999999999999999999999999999999999999999999986543 334445555566666788999999
Q ss_pred EecCCHHHHHHHHHHHHHHhcCCCccc
Q psy933 248 VVNNDIEETIGILEKAIEELHTTPQWI 274 (330)
Q Consensus 248 I~N~dle~a~~~L~~~i~~~~~~~~Wv 274 (330)
|+|||+++|+++|.++|.+++++||||
T Consensus 171 ivNd~l~~a~~~l~~ii~~~~~~pqWv 197 (197)
T 3ney_A 171 LVNNGVDETLKKLQEAFDQACSSPQWV 197 (197)
T ss_dssp EEESCHHHHHHHHHHHHHHCCCCCC--
T ss_pred EECCCHHHHHHHHHHHHHHccCCCCCC
Confidence 999999999999999999999999998
No 9
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=100.00 E-value=9.4e-40 Score=311.08 Aligned_cols=241 Identities=18% Similarity=0.253 Sum_probs=166.6
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhHHHHHHhhccccccccccccccccccccccccchhhhccccccCCcccc
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLV 80 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~e~r~~~~~~~~~~~~~~~~~~~~rk~k~~~~~~~~~~~~~~~~~~~~ 80 (330)
||||++++|++||||++.+.++.+|||||+.+.|+.+..... ..+.+ .+..++ +++.+| ++ .+.++
T Consensus 69 iL~V~~~~d~~WWqar~~~~~g~~GlIPS~~~~E~~~~~~~~-~~~~~-----~~~~~~-~~~~~~--~k-----~~~~~ 134 (337)
T 4dey_A 69 FLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQ-RAKEF-----KLHSKE-KRMPFF--KK-----TEHTP 134 (337)
T ss_dssp EEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHHHHHHHH-HCC--------------------------------CC
T ss_pred EEEEEecCCCCeEEEEECCCCCCccEecCHHHHHHHHHhhhh-ccccC-----CCCccc-cccccc--cc-----CCCCC
Confidence 699999999999999998777789999999998876544321 11111 111111 122232 11 24678
Q ss_pred CceeeecccCCCCCEEEEEcCCCccHH---HHHHHHHhhCCCCccccccccccCCCCcccCCeeE--EEecccchhhHHh
Q psy933 81 TYEEVVKLPSFKRKTLVLLGAHGVGRR---HIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAY--YFISHDEMMSDIA 155 (330)
Q Consensus 81 ~Ye~V~~~~~~~~r~ivLvGpsGvGKs---tL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy--~fvs~~~f~~~i~ 155 (330)
+||+|..| |||||+||+++|-. .+.++|+..++++|.++|++| |.++..+..+..+ +++++..|++.+.
T Consensus 135 ~Ye~vp~~-----RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~ 208 (337)
T 4dey_A 135 PYDVVPSM-----RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNT 208 (337)
T ss_dssp SEEEECSS-----CCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------
T ss_pred CccccCCC-----CceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhccccc
Confidence 99999644 89999999999965 367889999999999999765 9998888888875 6778888888888
Q ss_pred ccceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHH-HHHHHHhcCCCCEEEEEccCccccccCc--------hHHH
Q psy933 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIAAPQLQNLSDY--------DGSL 226 (330)
Q Consensus 156 ~~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~-~v~~L~~~~~~p~vIfI~pps~~~l~~~--------~e~~ 226 (330)
.+.|+| |++..+.|.++.++|++||||||++ |+++|++..+.|++|||.|||+++|++. ++.+
T Consensus 209 ~~~~~e--------v~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl 280 (337)
T 4dey_A 209 RSSLAE--------VQSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHL 280 (337)
T ss_dssp CCCHHH--------HHHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTH
T ss_pred ccchHH--------HHhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHH
Confidence 888876 4467777777888999999999998 9999999999999999999999998631 1222
Q ss_pred HHHHHHHHHHHhhccccceEEEecCCHHHHHHHHHHHHHHhcC
Q psy933 227 EKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHT 269 (330)
Q Consensus 227 ~rl~~~~~~ie~~~~~~fD~vI~N~dle~a~~~L~~~i~~~~~ 269 (330)
++..+.+++..+.|.+.||++|+|||+++||++|.++|.....
T Consensus 281 ~~al~~ae~E~~~~~~~FDyvIVNDdLe~A~~~L~~iI~~~~~ 323 (337)
T 4dey_A 281 NVQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWK 323 (337)
T ss_dssp HHHHHHHHHHHHSCGGGCSEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccCCEEEECCCHHHHHHHHHHHHHHHHh
Confidence 3222233443456789999999999999999999999977543
No 10
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=100.00 E-value=8.6e-38 Score=273.46 Aligned_cols=178 Identities=70% Similarity=1.146 Sum_probs=163.8
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcc
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM 169 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~ 169 (330)
|+++++++|+||||||||||++.|...+|..+..+++||||+|+.+|.+|++|+|++.++|..++.++.|++++++.+|+
T Consensus 2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~ 81 (180)
T 1kgd_A 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAM 81 (180)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCcc
Confidence 35678999999999999999999999988678899999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhccccceEEEe
Q psy933 170 YGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVV 249 (330)
Q Consensus 170 YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~~~fD~vI~ 249 (330)
||++.+++++++++|++||++++++|++.++...+.+++|||.||+.+.|+..++.++|+.++...++..|.++||++|+
T Consensus 82 yg~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R~~~i~r~~~~~~~~~~~~~~~~d~~i~ 161 (180)
T 1kgd_A 82 YGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLTII 161 (180)
T ss_dssp EEEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCCSHHHHHHHHHHHHHHHHHGGGCSEEEE
T ss_pred ccccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhhHHHHHHHHHHHHHHHHhhhCCCcEEEE
Confidence 99999999999999999999999999999998878899999999999999887888899988877787678899999999
Q ss_pred cCCHHHHHHHHHHHHHHh
Q psy933 250 NNDIEETIGILEKAIEEL 267 (330)
Q Consensus 250 N~dle~a~~~L~~~i~~~ 267 (330)
|+++++|+++|.++|.++
T Consensus 162 n~~~~~~~~~l~~~i~~~ 179 (180)
T 1kgd_A 162 NNEIDETIRHLEEAVELV 179 (180)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 999999999999999875
No 11
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=100.00 E-value=6.3e-34 Score=254.56 Aligned_cols=175 Identities=25% Similarity=0.437 Sum_probs=157.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
.+++|+|+||||||||||++.|+..+|..|...+++|||+|+.+|.+|++|+|++.+.|..++.++.|++++++.||+||
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg 86 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYG 86 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCC
Confidence 45799999999999999999999999867999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhccc
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAYEH 242 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~~~ 242 (330)
++.+.+++++++|++||+|++++++..++.....+++||+.|||.+.|++ .++++ +||..+..++ .+.+
T Consensus 87 ~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~--~~~~ 164 (208)
T 3tau_A 87 TPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEI--EMMA 164 (208)
T ss_dssp EEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHH--HHGG
T ss_pred CcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--Hhhc
Confidence 99999999999999999999999999999999999999999999888752 23445 4565554433 4678
Q ss_pred cceEEEecCCHHHHHHHHHHHHHHhc
Q psy933 243 FFDLTVVNNDIEETIGILEKAIEELH 268 (330)
Q Consensus 243 ~fD~vI~N~dle~a~~~L~~~i~~~~ 268 (330)
.||++|+|+++++++++|..+|....
T Consensus 165 ~~d~vivN~~~~~~~~~l~~~i~~~~ 190 (208)
T 3tau_A 165 SYDYAVVNDVVANAVQKIKGIVETEH 190 (208)
T ss_dssp GSSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHHHHHH
Confidence 89999999999999999999997653
No 12
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=100.00 E-value=2.4e-34 Score=252.55 Aligned_cols=174 Identities=29% Similarity=0.572 Sum_probs=144.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT 172 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt 172 (330)
+++++|+||+|||||||++.|...+|..|+.+++||||+|+.||++|.+|+|++.+.|..++..+.|++++++.+++||+
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~yg~ 80 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGS 80 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEEEeceeccC
Confidence 36899999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCeEEEEeCHHHHHHHHh-cCCCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhccc
Q psy933 173 KLETIRRIHQEGKIAILDVEPQALKILRT-GEFSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAYEH 242 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~-~~~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~~~ 242 (330)
+.+.++++++.|++|+++++++|++.++. ..+.+++|||.||+.+.|.+ .++.+ +||..+...++..+.+
T Consensus 81 ~~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~~~~~~~~~~ 160 (186)
T 3a00_A 81 TVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETG 160 (186)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC---------------------------------CC
T ss_pred cHHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999 88999999999999887752 23445 4677776666544458
Q ss_pred cceEEEecCCHHHHHHHHHHHHHH
Q psy933 243 FFDLTVVNNDIEETIGILEKAIEE 266 (330)
Q Consensus 243 ~fD~vI~N~dle~a~~~L~~~i~~ 266 (330)
.||++|+||++++|+++|.++|..
T Consensus 161 ~~d~vi~nd~~~~a~~~l~~~i~~ 184 (186)
T 3a00_A 161 AHDKVIVNDDLDKAYKELKDFIFA 184 (186)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHTT
T ss_pred CCcEEEECcCHHHHHHHHHHHHHh
Confidence 999999999999999999999853
No 13
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.98 E-value=1.1e-31 Score=238.62 Aligned_cols=177 Identities=23% Similarity=0.472 Sum_probs=155.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
.+++|+|+||||||||||+++|.+.+|..|..+++||||+||.+|.+|.+|+|++.++|..++.+|.|++++++.|++||
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYG 90 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeec
Confidence 45799999999999999999999998755889999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCC--CCEEEEEccCcccccc--------CchHHHH-HHHHHHHHHHhhc
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQALKILRTGEF--SPFVVFIAAPQLQNLS--------DYDGSLE-KLAKESDILKSAY 240 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~--~p~vIfI~pps~~~l~--------~~~e~~~-rl~~~~~~ie~~~ 240 (330)
++.+.++.+++.|+.||+|+++++++.++.... .+++|||.|++.+.+. +.++.++ |+......+...|
T Consensus 91 ~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~ 170 (204)
T 2qor_A 91 TLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEAD 170 (204)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999988765 6899999988887764 2344553 5665555554226
Q ss_pred cccceEEEecCCHHHHHHHHHHHHHHhc
Q psy933 241 EHFFDLTVVNNDIEETIGILEKAIEELH 268 (330)
Q Consensus 241 ~~~fD~vI~N~dle~a~~~L~~~i~~~~ 268 (330)
...||++|+|+++++++++|.++|....
T Consensus 171 ~~~~d~vi~n~~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 171 KVGFNYFIVNDDLARTYAELREYLLGSY 198 (204)
T ss_dssp HHTCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred hccCcEEEECcCHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999998653
No 14
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.97 E-value=3.5e-30 Score=233.37 Aligned_cols=174 Identities=25% Similarity=0.412 Sum_probs=155.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC-CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD-KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY 170 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~-~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y 170 (330)
.+++++|+||||||||||++.|+...|. .+.+.+++|||+|+++|.+|++|+|++.+.|..+...|.|+|+.++.+++|
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~y 94 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 94 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccC
Confidence 4589999999999999999999999873 588899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhcc
Q psy933 171 GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYE 241 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~ 241 (330)
|++.+.|+++++.|++||||+|+++.+.++.....+.+|||.+|+++.+. ++.+++ +|+..+..++ .+.
T Consensus 95 g~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~--~~~ 172 (219)
T 1s96_A 95 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEM--SHY 172 (219)
T ss_dssp EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHH--TTG
T ss_pred CCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--hhc
Confidence 99999999999999999999999999999987778899999999988764 244555 4676665555 467
Q ss_pred ccceEEEecCCHHHHHHHHHHHHHHh
Q psy933 242 HFFDLTVVNNDIEETIGILEKAIEEL 267 (330)
Q Consensus 242 ~~fD~vI~N~dle~a~~~L~~~i~~~ 267 (330)
+.||++|+|+|+++|+++|..+|...
T Consensus 173 ~~~d~~i~Nd~l~~a~~~l~~ii~~~ 198 (219)
T 1s96_A 173 AEYDYLIVNDDFDTALTDLKTIIRAE 198 (219)
T ss_dssp GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEECcCHHHHHHHHHHHHHHH
Confidence 88999999999999999999999764
No 15
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.97 E-value=1.7e-30 Score=230.84 Aligned_cols=175 Identities=30% Similarity=0.634 Sum_probs=153.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT 172 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt 172 (330)
+++++|+||||||||||++.|...+|..|+..++||||+|+.|+++|.+|+|++.++|.+++.++.|++++++.+|+||+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g~ 83 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGT 83 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCCC
Confidence 57899999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHHH-HHHHHHHHHHhh-ccc
Q psy933 173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSLE-KLAKESDILKSA-YEH 242 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~~-rl~~~~~~ie~~-~~~ 242 (330)
+.+.++++++.|+.|+++++++|+..++...+.|.++||++|+...|. ++++.++ +|......+... +.+
T Consensus 84 ~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~~ 163 (198)
T 1lvg_A 84 SKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPG 163 (198)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTT
T ss_pred CHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999998887788999999999987764 2344553 455544444322 237
Q ss_pred cceEEEecCCHHHHHHHHHHHHHHh
Q psy933 243 FFDLTVVNNDIEETIGILEKAIEEL 267 (330)
Q Consensus 243 ~fD~vI~N~dle~a~~~L~~~i~~~ 267 (330)
.||++|+|+++++|+++|.++|...
T Consensus 164 ~~D~iivnd~le~a~~~l~~ii~~~ 188 (198)
T 1lvg_A 164 LFDLVIINDDLDKAYATLKQALSEE 188 (198)
T ss_dssp TCSEEEECSSHHHHHHHHHHHTHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHHHH
Confidence 8999999999999999999999764
No 16
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.93 E-value=1e-24 Score=192.06 Aligned_cols=172 Identities=22% Similarity=0.404 Sum_probs=151.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGT 172 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YGt 172 (330)
+..|+|+||+|||||||++.|...+| .+.....++||+++.++.+|+.|+|.+...|..+...+.|++++.+.++.||+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA-EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGT 85 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS-SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEE
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC-CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccc
Confidence 57999999999999999999999988 58888899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc--------CchHHH-HHHHHHHHHHHhhcccc
Q psy933 173 KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS--------DYDGSL-EKLAKESDILKSAYEHF 243 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~--------~~~e~~-~rl~~~~~~ie~~~~~~ 243 (330)
+.+.+.++++.|+.|+++++++++..++.....+.+||+.||+.+.+. +.++.+ +||..+...+ .+...
T Consensus 86 ~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~--~~~~~ 163 (205)
T 3tr0_A 86 EKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEM--AHYKE 163 (205)
T ss_dssp EHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHH--TTGGG
T ss_pred hHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--hcccC
Confidence 999999999999999999999999999998889999999999877663 123333 4565554433 45688
Q ss_pred ceEEEecCCHHHHHHHHHHHHHHh
Q psy933 244 FDLTVVNNDIEETIGILEKAIEEL 267 (330)
Q Consensus 244 fD~vI~N~dle~a~~~L~~~i~~~ 267 (330)
||++|+|+++++++++|..+|...
T Consensus 164 ~d~vi~n~~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 164 FDYLVVNDNFDQAVQNLIHIISAE 187 (205)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999754
No 17
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.93 E-value=1.7e-25 Score=202.07 Aligned_cols=175 Identities=21% Similarity=0.321 Sum_probs=142.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH-hhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLI-NKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY 170 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~-~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y 170 (330)
.+.+|+|+||+|||||||++.|. ..+| .+...+++|||+|+.|+++|.+|+|++...|..+...+.|++++++.++.|
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN-NIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFY 104 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC-----CEEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC-CcccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccC
Confidence 46799999999999999999999 8887 488899999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcC-CCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhc
Q psy933 171 GTKLETIRRIHQEGKIAILDVEPQALKILRTGE-FSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAY 240 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~-~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~ 240 (330)
|++...++++++.|+.|++++++.+...++... ..+.+||+.+|+.+.+.+ ..+.+ ++|......+ .+
T Consensus 105 ~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~--~~ 182 (231)
T 3lnc_A 105 GVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEI--SH 182 (231)
T ss_dssp EEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHHHH--TT
T ss_pred CCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--hh
Confidence 999999999999999999999999999998866 567899999998776642 22333 3444444333 35
Q ss_pred cccceEEEecCCHHHHHHHHHHHHHHhcC
Q psy933 241 EHFFDLTVVNNDIEETIGILEKAIEELHT 269 (330)
Q Consensus 241 ~~~fD~vI~N~dle~a~~~L~~~i~~~~~ 269 (330)
.+.||+||+|+++++++++|..+|.....
T Consensus 183 ~~~~d~vI~n~~~e~~~~~l~~~i~~~~~ 211 (231)
T 3lnc_A 183 CEAYDYVIVNEDIEETADRISNILRAEQM 211 (231)
T ss_dssp GGGSSEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred hcCCeEEEECcCHHHHHHHHHHHHHHHhh
Confidence 67899999999999999999999987654
No 18
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.91 E-value=4.7e-23 Score=185.60 Aligned_cols=175 Identities=24% Similarity=0.458 Sum_probs=149.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
.+.+++|+||||||||||++.|+..+|..+...+++|||+|+.++.+|++|.|.+...|..+...+.|++++++.++.||
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 101 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYG 101 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCC
Confidence 46799999999999999999999988744555789999999999999999999999999999889999999999999999
Q ss_pred ccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcC--CCCEEEEEccCccccccC--------chHHHH-HHHHHHHHHHhhc
Q psy933 172 TKLETIRRIHQEGKIAILDVEPQALKILRTGE--FSPFVVFIAAPQLQNLSD--------YDGSLE-KLAKESDILKSAY 240 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~--~~p~vIfI~pps~~~l~~--------~~e~~~-rl~~~~~~ie~~~ 240 (330)
++...++++++.++.+++++++.|.+++|... ..|..+|+.+|++..|.+ .++.+. ++......+. +
T Consensus 102 ~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~--~ 179 (218)
T 1z6g_A 102 TLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH--E 179 (218)
T ss_dssp EEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH--H
T ss_pred CcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH--h
Confidence 99999999999999999999999999998776 678999999998877642 334443 4444333332 3
Q ss_pred c--ccceEEEecCCHHHHHHHHHHHHHHhc
Q psy933 241 E--HFFDLTVVNNDIEETIGILEKAIEELH 268 (330)
Q Consensus 241 ~--~~fD~vI~N~dle~a~~~L~~~i~~~~ 268 (330)
. ..||.+|+|+|+++|++.+..+|....
T Consensus 180 ~h~~~~d~iiv~~~~~ea~~~~~~ii~~~~ 209 (218)
T 1z6g_A 180 ANLLNFNLSIINDDLTLTYQQLKNYLLNSY 209 (218)
T ss_dssp HTTSCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred hcccCCCEEEECCCHHHHHHHHHHHHHHHH
Confidence 3 689999999999999999999998754
No 19
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.87 E-value=2e-21 Score=170.84 Aligned_cols=174 Identities=25% Similarity=0.480 Sum_probs=136.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC-CCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF-PDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY 170 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~-p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y 170 (330)
.+..|+|+||+|||||||++.|...+ | .+...+.++||+|+.++.+|.+|+|.+.+.|..++.++.++++..+.+++|
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPST-SYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTTC-CEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCC-CeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 45799999999999999999999887 5 355578899999998899999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccC--------chHHH-HHHHHHHHHHHhhcc
Q psy933 171 GTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSL-EKLAKESDILKSAYE 241 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~--------~~e~~-~rl~~~~~~ie~~~~ 241 (330)
|++.+.++.+++.|+.+|+|+...+...++.....+++||+.||+.+.+.+ .++.+ +++...... ..+.
T Consensus 84 g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~--~~~~ 161 (207)
T 2j41_A 84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKE--VEMM 161 (207)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CG--GGGG
T ss_pred CCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--Hhcc
Confidence 999999999999999999999988888888765678999999887655432 11222 223222222 2344
Q ss_pred ccceEEEecCCHHHHHHHHHHHHHHhc
Q psy933 242 HFFDLTVVNNDIEETIGILEKAIEELH 268 (330)
Q Consensus 242 ~~fD~vI~N~dle~a~~~L~~~i~~~~ 268 (330)
..+|++|+|+++++++++|.+++....
T Consensus 162 ~~~d~vI~n~~~e~~~~~i~~~l~~~~ 188 (207)
T 2j41_A 162 NLYDYVVVNDEVELAKNRIQCIVEAEH 188 (207)
T ss_dssp GGCSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHHHhh
Confidence 678999999999999999999997653
No 20
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.74 E-value=7.5e-17 Score=143.20 Aligned_cols=172 Identities=24% Similarity=0.373 Sum_probs=140.2
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC--c
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED--A 168 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g--~ 168 (330)
..+.+++|+||+|||||||++.|....+. +...+.+|+|+|+.++..|+.|.|.+...|..+...+.|+++.++.+ +
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n~~ 96 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLH 96 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-eEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCchh
Confidence 35689999999999999999999998874 55568899999988888999999999999998888899999998888 7
Q ss_pred cccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCccccccCc--------hHHH-HHHHHHHHHHHhh
Q psy933 169 MYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDY--------DGSL-EKLAKESDILKSA 239 (330)
Q Consensus 169 ~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~~~--------~e~~-~rl~~~~~~ie~~ 239 (330)
+||++...+++.++++..++++++..++..++......+.+++..|+...|-+. +... +++.+...++..
T Consensus 97 ~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~- 175 (207)
T 1znw_A 97 RSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAA- 175 (207)
T ss_dssp EEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHG-
T ss_pred hcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh-
Confidence 899999999999999999999999999998888888888899998877655321 2223 345444444432
Q ss_pred ccccceEEEecCCHHHHHHHHHHHHH
Q psy933 240 YEHFFDLTVVNNDIEETIGILEKAIE 265 (330)
Q Consensus 240 ~~~~fD~vI~N~dle~a~~~L~~~i~ 265 (330)
.+.++.++++.|++++......++-
T Consensus 176 -~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 176 -QGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp -GGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred -hccCcEEEECCCHHHHHHHHHHHHH
Confidence 3458999999999999887776654
No 21
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=99.42 E-value=3.7e-14 Score=134.44 Aligned_cols=99 Identities=14% Similarity=0.232 Sum_probs=82.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT 164 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~ 164 (330)
+++|+|+||||||||+|+.+|++.++.. +...+++||++|+++|.+|++|||++..+|.+.+..+.|.+.+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a- 81 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA- 81 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH-
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH-
Confidence 4588999999999999999999988742 3556899999999999999999999999999888888776554
Q ss_pred ecCccccccHHHHHHHHHhCCeEEEEeCHH-HHHHHHh
Q psy933 165 HEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRT 201 (330)
Q Consensus 165 ~~g~~YGts~~~i~~v~~~gk~~vldv~~~-~v~~L~~ 201 (330)
...|+++.++|+++||.-... =++.|-.
T Consensus 82 ---------~~~i~~i~~~gk~pIlVGGTglYi~aLl~ 110 (322)
T 3exa_A 82 ---------TPLITEIHERGRLPFLVGGTGLYVNAVIH 110 (322)
T ss_dssp ---------HHHHHHHHHTTCEEEEESCCHHHHHHHHH
T ss_pred ---------HHHHHHHHhCCCcEEEEcCcHHHHHHHHc
Confidence 889999999999999865432 2455543
No 22
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.42 E-value=1.3e-13 Score=132.03 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=76.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC--------CccccccccccCCCCcccCCeeEEEecccch-hhHHhccceeeEE
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD--------KYAYPVPHTTRSPRSDEENGRAYYFISHDEM-MSDIAANQYLEYG 163 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~--------~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f-~~~i~~~~fle~~ 163 (330)
+++|+|+||+|||||+|+..|++.++. .+...+++||++|+.+|.+|++|||++..++ .+....+.|.+..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a 119 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLA 119 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHH
Confidence 358999999999999999999998863 2445689999999999999999999999999 7778888888765
Q ss_pred eecCccccccHHHHHHHHHhCCeEEEEe
Q psy933 164 THEDAMYGTKLETIRRIHQEGKIAILDV 191 (330)
Q Consensus 164 ~~~g~~YGts~~~i~~v~~~gk~~vldv 191 (330)
...|+++.+.|+.+|+.-
T Consensus 120 ----------~~~i~~i~~~g~~pIlvG 137 (339)
T 3a8t_A 120 ----------GKAVSEITGRRKLPVLVG 137 (339)
T ss_dssp ----------HHHHHHHHHTTCEEEEEC
T ss_pred ----------HHHHHHHHhcCCeEEEEc
Confidence 677888888999988863
No 23
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=99.40 E-value=4e-14 Score=133.98 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=83.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC--------CccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD--------KYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 163 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~--------~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~ 163 (330)
++++|+|+||||||||+|+..|++.++. .+...+++||++|+++|.+|++|||++..++.+....+.|.+.+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a 88 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDA 88 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHH
Confidence 4568999999999999999999999874 24556899999999999999999999999999888888776654
Q ss_pred eecCccccccHHHHHHHHHhCCeEEEEeCHH-HHHHHH
Q psy933 164 THEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILR 200 (330)
Q Consensus 164 ~~~g~~YGts~~~i~~v~~~gk~~vldv~~~-~v~~L~ 200 (330)
...|+++.+.|+++||.-... =++.|-
T Consensus 89 ----------~~~i~~i~~~g~~pilVGGTglYi~all 116 (316)
T 3foz_A 89 ----------LAEMADITAAGRIPLLVGGTMLYFKALL 116 (316)
T ss_dssp ----------HHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred ----------HHHHHHHHhCCCcEEEEcCcHHHHHHHH
Confidence 788999999999998875442 245554
No 24
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=99.38 E-value=7.5e-14 Score=136.45 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=79.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCC--------ccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEee
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDK--------YAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH 165 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~--------f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~ 165 (330)
++|+|+||||||||+|+.+|++.++.. +...+++||++|+++|.+|++|||++..+|.+++..+.|++++
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a-- 80 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC-- 80 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH--
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH--
Confidence 579999999999999999999987642 4455899999999999999999999999999999999999987
Q ss_pred cCccccccHHHHHHHHHhCCeEEEEe
Q psy933 166 EDAMYGTKLETIRRIHQEGKIAILDV 191 (330)
Q Consensus 166 ~g~~YGts~~~i~~v~~~gk~~vldv 191 (330)
...|+++.+.|+++||.-
T Consensus 81 --------~~~i~~i~~~g~~pilVG 98 (409)
T 3eph_A 81 --------MNAIEDIHRRGKIPIVVG 98 (409)
T ss_dssp --------HHHHHHHHTTTCEEEEEC
T ss_pred --------HHHHHHHHhcCCCEEEEC
Confidence 889999999999999854
No 25
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.34 E-value=1.7e-13 Score=128.31 Aligned_cols=159 Identities=11% Similarity=0.150 Sum_probs=104.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccc-cccCCCCcccCCeeEEEecccchhhHHhccceeeEE-eecCcc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPH-TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG-THEDAM 169 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~-TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~-~~~g~~ 169 (330)
++..|+|+||||||||||+++|.+.++.. ...|+. ++|.++++ |..++.. |.++. ++.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~-~~~Is~D~~R~~~~~--------------~~~~~~~--~~~~a~~~~~~~ 94 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGN-VIVIDNDTFKQQHPN--------------FDELVKL--YEKDVVKHVTPY 94 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTC-CEEECTHHHHTTSTT--------------HHHHHHH--HGGGCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC-eEEEechHhHHhchh--------------hHHHHHH--ccchhhhhhhHH
Confidence 45689999999999999999999987642 334444 67766554 2222222 44443 445788
Q ss_pred ccc-cHHHHHHHHHhCCeEEEEeCHHHHH---HH----HhcCCCC-EEEEEccCccccc--c---------------Cch
Q psy933 170 YGT-KLETIRRIHQEGKIAILDVEPQALK---IL----RTGEFSP-FVVFIAAPQLQNL--S---------------DYD 223 (330)
Q Consensus 170 YGt-s~~~i~~v~~~gk~~vldv~~~~v~---~L----~~~~~~p-~vIfI~pps~~~l--~---------------~~~ 223 (330)
||+ ....++..++.|+.+|+|.+..+.. .+ +..++.. +++|+.||+...+ . ..+
T Consensus 95 ~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~~ 174 (287)
T 1gvn_B 95 SNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATP 174 (287)
T ss_dssp HHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCCC
T ss_pred HHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 998 4577888899999999999875533 32 3334433 3556667765522 1 111
Q ss_pred -HH----HHHHHHHHHHHHhhccccceEEEecCCH--------HHHHHHHHHHHHHhcC
Q psy933 224 -GS----LEKLAKESDILKSAYEHFFDLTVVNNDI--------EETIGILEKAIEELHT 269 (330)
Q Consensus 224 -e~----~~rl~~~~~~ie~~~~~~fD~vI~N~dl--------e~a~~~L~~~i~~~~~ 269 (330)
+. .++|..+...+. ....||++++|++. +.+...+.++|.....
T Consensus 175 ~e~~~~i~~rl~~a~~el~--~~~~~d~v~v~d~~g~~ly~~~~~~~~~~~~ii~~e~~ 231 (287)
T 1gvn_B 175 KQAHDIVVKNLPTNLETLH--KTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELN 231 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHTCCSCEEEECTTCCEEEETTTCTTSCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH--cCCCCCeEEEEeCCCCEeeccCCCCCcCHHHHHHHHHc
Confidence 22 245555555553 35789999999864 7777888888887765
No 26
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=99.15 E-value=1.6e-11 Score=122.31 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=46.0
Q ss_pred ccccchhhhhhhccceeeEEEEcCCH-HHHHHHHHHHHHHhcCCCceeecccC
Q psy933 278 WLAKESDILKSAYEHFFDLTVVNNDI-EETIGILEKAIEELHTTPQWIPVSWV 329 (330)
Q Consensus 278 w~~~~~~~~e~~y~h~fd~~ivn~~~-~~~~~~l~~~~~~~~~~~qWvp~~w~ 329 (330)
-+.+.+.+||..|+|+||.||||||+ +.||.+|+++|+.++++|||||++|+
T Consensus 333 r~~~~a~~~e~~~~~~fD~vIvNddl~d~a~~~L~~ii~~~~~~~~WvP~~~~ 385 (468)
T 3shw_A 333 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKA 385 (468)
T ss_dssp HHHHHHHHHHHHHGGGCSEEEECBTTBCHHHHHHHHHHHHHHTSCEEEEC---
T ss_pred HHHHHHHHHHHhhhccCCEEEECCCcHHHHHHHHHHHHHHhcCCCEEeCCccc
Confidence 45667889999999999999999999 59999999999999999999999997
No 27
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=99.12 E-value=2.7e-11 Score=114.47 Aligned_cols=53 Identities=23% Similarity=0.347 Sum_probs=46.5
Q ss_pred cccccchhhhhhhccceeeEEE-EcCCHHHHHHHHHHHHHHhcCCCceeecccC
Q psy933 277 SWLAKESDILKSAYEHFFDLTV-VNNDIEETIGILEKAIEELHTTPQWIPVSWV 329 (330)
Q Consensus 277 sw~~~~~~~~e~~y~h~fd~~i-vn~~~~~~~~~l~~~~~~~~~~~qWvp~~w~ 329 (330)
.-+.+.+.+||..|+|+||.|| |||||+.||.+|+++|..++++|||||++=+
T Consensus 249 ~r~~~aa~eiE~~~~~~FD~vI~VNDdle~A~~~L~~iI~~~~~epqWvp~~~~ 302 (308)
T 3kfv_A 249 RRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQQTRPIWTAEDQL 302 (308)
T ss_dssp HHHHHHHHHHHHHHGGGCSEEEEECSSSTHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHHHHHHHHhhhccCcEEEEcCCCHHHHHHHHHHHHHHhcCCCeEeehhhh
Confidence 3556677789999999999999 9999999999999999999999999999855
No 28
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=99.08 E-value=1.3e-11 Score=117.62 Aligned_cols=91 Identities=14% Similarity=0.218 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCc--------cccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKY--------AYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 163 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f--------~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~ 163 (330)
+++.|+|+||+|||||||+..|++.++..+ ...+++||++|+++|.+|++|||++..++......+.|.+..
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a 83 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA 83 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence 446899999999999999999999876322 223688999999999999999999999887777777777664
Q ss_pred eecCccccccHHHHHHHHHhCCeEEEEeC
Q psy933 164 THEDAMYGTKLETIRRIHQEGKIAILDVE 192 (330)
Q Consensus 164 ~~~g~~YGts~~~i~~v~~~gk~~vldv~ 192 (330)
...|+++.+.|+.+|+.-.
T Consensus 84 ----------~~~i~~i~~~g~~~IlvGG 102 (323)
T 3crm_A 84 ----------LAAMAKATARGRIPLLVGG 102 (323)
T ss_dssp ----------HHHHHHHHHTTCEEEEEES
T ss_pred ----------HHHHHHHHHcCCeEEEECC
Confidence 7788889999998888654
No 29
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.01 E-value=1.5e-10 Score=106.00 Aligned_cols=113 Identities=9% Similarity=0.070 Sum_probs=77.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCcc--------ccccccccCCCCcccCCeeEEEecccchhh-HHhccceeeEEe
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYA--------YPVPHTTRSPRSDEENGRAYYFISHDEMMS-DIAANQYLEYGT 164 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~--------~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~-~i~~~~fle~~~ 164 (330)
+.|+|+||+|||||||++.|++..+-.+. ...+++|++|++.|.+|..|+|++...+.+ ....+.|++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~--- 78 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHR--- 78 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHH---
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHH---
Confidence 47899999999999999999987543221 224678999999999999999998766542 222223322
Q ss_pred ecCccccccHHHHHHHHHhCCeEEEEeCH-HHHHHHHh-----cCCCCEEEEEccCccc
Q psy933 165 HEDAMYGTKLETIRRIHQEGKIAILDVEP-QALKILRT-----GEFSPFVVFIAAPQLQ 217 (330)
Q Consensus 165 ~~g~~YGts~~~i~~v~~~gk~~vldv~~-~~v~~L~~-----~~~~p~vIfI~pps~~ 217 (330)
.....+ ++++.|+.+|++... .-++.+.. ..+...+||+.+|..+
T Consensus 79 -------~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e 129 (253)
T 2ze6_A 79 -------RLIFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSD 129 (253)
T ss_dssp -------HHHHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHH
T ss_pred -------HHHHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHH
Confidence 234556 666789998888653 23344333 2345578999988643
No 30
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.94 E-value=3.1e-10 Score=110.74 Aligned_cols=49 Identities=24% Similarity=0.388 Sum_probs=45.6
Q ss_pred ccccchhhhhhhccceeeEEEEcCCHH-HHHHHHHHHHHHhcCCCceeec
Q psy933 278 WLAKESDILKSAYEHFFDLTVVNNDIE-ETIGILEKAIEELHTTPQWIPV 326 (330)
Q Consensus 278 w~~~~~~~~e~~y~h~fd~~ivn~~~~-~~~~~l~~~~~~~~~~~qWvp~ 326 (330)
-+.+.|.+||..|+|+||.||||||++ .||.+|+++|+.++++|||||+
T Consensus 341 ~~~~~a~~~e~~~~~~fd~vivNd~l~~~a~~~l~~ii~~~~~~~~Wvp~ 390 (391)
T 3tsz_A 341 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSE 390 (391)
T ss_dssp HHHHHHHHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHHHHHSEEEEEC
T ss_pred HHHHHHHHHHHhccccCcEEEECCCcHHHHHHHHHHHHHHhcCCCeeccC
Confidence 456677899999999999999999998 7999999999999999999996
No 31
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.94 E-value=1.6e-08 Score=85.24 Aligned_cols=135 Identities=11% Similarity=0.077 Sum_probs=76.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHh-ccceeeEEeecCccccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA-ANQYLEYGTHEDAMYGT 172 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~-~~~fle~~~~~g~~YGt 172 (330)
+.|+|+||+||||||++++|.+.+. |.|++.+.+..... ...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~-----------------------~~~i~~d~~~~~~~~~~~~~------------ 46 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK-----------------------YPIIKGSSFELAKSGNEKLF------------ 46 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC-----------------------CCEEECCCHHHHTTCHHHHH------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC-----------------------CeeecCcccccchhHHHHHH------------
Confidence 4799999999999999999988753 33444444433222 00000
Q ss_pred cHHHHHHHHHhCCeEEEEeCH------------------HHHHHHHhcCCC-CEEEEEccCcccccc----------Cch
Q psy933 173 KLETIRRIHQEGKIAILDVEP------------------QALKILRTGEFS-PFVVFIAAPQLQNLS----------DYD 223 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~~------------------~~v~~L~~~~~~-p~vIfI~pps~~~l~----------~~~ 223 (330)
+....+..|..+++|-.. .....+...... ..+||+.+| .+.+. ...
T Consensus 47 ---~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~l~~~-~e~~~~R~~~r~r~~~~~ 122 (173)
T 3kb2_A 47 ---EHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAKVVYLHAD-PSVIKKRLRVRGDEYIEG 122 (173)
T ss_dssp ---HHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEEEEEEECC-HHHHHHHHHHHSCSCCCH
T ss_pred ---HHHHHHHhCCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCEEEEEeCC-HHHHHHHHHhcCCcchhh
Confidence 111233445555555332 223333332223 357777765 33332 112
Q ss_pred HHHHHHHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933 224 GSLEKLAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEELH 268 (330)
Q Consensus 224 e~~~rl~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~~ 268 (330)
+.++++.+..+.....|. ..+++|.++ ++++++++|...+++..
T Consensus 123 ~~~~~~~~~~~~~~~~~~-~~~~~id~~~~~~~ev~~~I~~~~~~~~ 168 (173)
T 3kb2_A 123 KDIDSILELYREVMSNAG-LHTYSWDTGQWSSDEIAKDIIFLVELEH 168 (173)
T ss_dssp HHHHHHHHHHHHHHHTCS-SCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred hHHHHHHHHHHHHHhhcC-CCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 233455554444444454 567888876 89999999999998753
No 32
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.93 E-value=5.1e-09 Score=89.30 Aligned_cols=152 Identities=14% Similarity=0.137 Sum_probs=84.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc----ccccCCCCc-ccCCeeEEEecccchhhHHhccceeeEEeecC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP----HTTRSPRSD-EENGRAYYFISHDEMMSDIAANQYLEYGTHED 167 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~----~TTR~pr~~-E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g 167 (330)
++.|+|+|||||||||+++.|.+.++..|. +++ +.+++++.+ +.+|.+|. + .+.+.. .....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~--~---------~~~~~~-~~~~~ 69 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWL-AFGVDSLIEAMPLKMQSAEGGIEFD--A---------DGGVSI-GPEFR 69 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEE-EEEHHHHHHHSCGGGGTSTTSEEEC--T---------TSCEEE-CHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeE-EeccchHhhhcchhhccchhhcccc--C---------CCcccc-chhHH
Confidence 468999999999999999999998764332 212 125555543 33555442 0 011111 01111
Q ss_pred ccccccHHHHHHHHHhCCeEEEEeCH----HHHHHHHhc--CCCCEEEEEccCccccccCchHHHHHHHHH--------H
Q psy933 168 AMYGTKLETIRRIHQEGKIAILDVEP----QALKILRTG--EFSPFVVFIAAPQLQNLSDYDGSLEKLAKE--------S 233 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vldv~~----~~v~~L~~~--~~~p~vIfI~pps~~~l~~~~e~~~rl~~~--------~ 233 (330)
..|+.....+...++.|..+|++... .....++.. ....++||+.+| .+.+. +|+... .
T Consensus 70 ~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~-~e~l~------~R~~~r~~~~~~~~~ 142 (178)
T 1qhx_A 70 ALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD-GAVAE------GRETARGDRVAGMAA 142 (178)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECC-HHHHH------HHHHHTSSSCTTHHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECC-HHHHH------HHHHhhCCcccchhh
Confidence 34555556677788889999998853 212233321 222367888875 44432 222110 1
Q ss_pred HHHHhhcc-ccceEEEecC--CHHHHHHHHHHHH
Q psy933 234 DILKSAYE-HFFDLTVVNN--DIEETIGILEKAI 264 (330)
Q Consensus 234 ~~ie~~~~-~~fD~vI~N~--dle~a~~~L~~~i 264 (330)
...+..+. ..+|++|.++ +.++++++|.+.+
T Consensus 143 ~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 143 KQAYVVHEGVEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp HHTTGGGTTCCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred hhchhhccCCCCcEEEECCCCCHHHHHHHHHHHh
Confidence 11111121 2389999876 6888888876543
No 33
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.93 E-value=6.8e-09 Score=87.13 Aligned_cols=150 Identities=13% Similarity=0.172 Sum_probs=81.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecc-cchhhHHhccc-----eeeEEeecC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISH-DEMMSDIAANQ-----YLEYGTHED 167 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~-~~f~~~i~~~~-----fle~~~~~g 167 (330)
..|+|+||+||||||+++.| +.+. + .+++. +.+......+. +.++....-
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g--~---------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 57 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG--A---------------------KVIVMSDVVRKRYSIEAKPGERLMDFAKRLR 57 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT--C---------------------EEEEHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC--C---------------------cEEEHhHHHHHHHHhcCCChhHHHHHHHHHH
Confidence 47999999999999999999 6542 1 12221 11222111111 000000000
Q ss_pred cccc--ccHHHHHHHH--HhCCeEEEEe--CHHHHHHHHhcCCCC-EEEEEccCccccc---cC--------chHHH-HH
Q psy933 168 AMYG--TKLETIRRIH--QEGKIAILDV--EPQALKILRTGEFSP-FVVFIAAPQLQNL---SD--------YDGSL-EK 228 (330)
Q Consensus 168 ~~YG--ts~~~i~~v~--~~gk~~vldv--~~~~v~~L~~~~~~p-~vIfI~pps~~~l---~~--------~~e~~-~r 228 (330)
..+| .....+.+.+ ..++.+|+|- .+..+..|+.....| .+||+.+|.-..+ .. ..+++ ++
T Consensus 58 ~~~~~~~~~~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r 137 (179)
T 3lw7_A 58 EIYGDGVVARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRR 137 (179)
T ss_dssp HHHCTTHHHHHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHH
Confidence 0011 1123344455 5678888874 355556666544334 5888887742221 11 11222 23
Q ss_pred HHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 229 LAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 229 l~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
+..+...-...|....|++|.|+ ++++++++|..++..+
T Consensus 138 ~~~~~~~~~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 138 DREELKLGIGEVIAMADYIITNDSNYEEFKRRCEEVTDRV 177 (179)
T ss_dssp HHHHHHHTHHHHHHTCSEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHhhhccChHhHHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 32222211234567889999998 9999999999998865
No 34
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.92 E-value=6e-10 Score=106.72 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=71.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC------Cc--cccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD------KY--AYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT 164 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~------~f--~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~ 164 (330)
++.|+|+||||||||||+.+|++.++. .| ...++++|++|+..|.+|++|||++..++...+..+.|.+..
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a- 85 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRA- 85 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHH-
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHH-
Confidence 358999999999999999999998762 22 556789999999999999999999988877666666665543
Q ss_pred ecCccccccHHHHHHHHHhCCeEEEE
Q psy933 165 HEDAMYGTKLETIRRIHQEGKIAILD 190 (330)
Q Consensus 165 ~~g~~YGts~~~i~~v~~~gk~~vld 190 (330)
...+.++...|+.+|+.
T Consensus 86 ---------~~~i~~i~~~g~~~Ilv 102 (340)
T 3d3q_A 86 ---------EKYIKDITRRGKVPIIA 102 (340)
T ss_dssp ---------HHHHHHHHHTTCEEEEE
T ss_pred ---------HHHHHHHHhCCCcEEEE
Confidence 66777788888888774
No 35
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.91 E-value=4.3e-10 Score=105.69 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=45.7
Q ss_pred ccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCceeecc
Q psy933 278 WLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS 327 (330)
Q Consensus 278 w~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWvp~~ 327 (330)
-+.+++.++|..|+|+||.||+||||++||.+|+++|...+++|||||+.
T Consensus 238 ~~~~r~~k~e~e~~~~fD~vIvNddle~a~~~l~~iI~~e~~~~~WVP~~ 287 (292)
T 3tvt_A 238 KTYERAIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSK 287 (292)
T ss_dssp HHHHHHHHHHHHHTTTCSEEECCSSHHHHHHHHHHHHHHHTCSEEEEEC-
T ss_pred HHHHHHHHHHHhhhhhCCEEEECcCHHHHHHHHHHHHHHhhCCCeEecCc
Confidence 34566788999999999999999999999999999999999999999973
No 36
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.90 E-value=4.7e-09 Score=91.38 Aligned_cols=163 Identities=12% Similarity=0.142 Sum_probs=83.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCcc-ccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYA-YPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~-~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
++.|+|+|++||||||+++.|.+.++ .+. ..+...+|..+.|+. ...+|.+...|..... .+++.. +.|
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~-g~~~~~~~~~~~~~~~g~~--i~~~~~~~~~~~~~~~--~~l~~~----~r~- 73 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIP-ANTIKYLNFPQRSTVTGKM--IDDYLTRKKTYNDHIV--NLLFCA----NRW- 73 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSC-GGGEEEEESSCTTSHHHHH--HHHHHTSSCCCCHHHH--HHHHHH----HHH-
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHC-CCceEEEecCCCCCcHHHH--HHHHHhcCCCCCHHHH--HHHHHH----HHH-
Confidence 46899999999999999999998763 121 112222221112211 1112222122222111 111111 222
Q ss_pred ccHHHHHHHHHhCCeEEEEe--------------CHHHHHHHHhcCCC-CEEEEEccCccccccCc-----h--HHHHHH
Q psy933 172 TKLETIRRIHQEGKIAILDV--------------EPQALKILRTGEFS-PFVVFIAAPQLQNLSDY-----D--GSLEKL 229 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv--------------~~~~v~~L~~~~~~-p~vIfI~pps~~~l~~~-----~--e~~~rl 229 (330)
.....+...+.+|..+|+|- +.+.+..+...... -.+||+..|.-..++.. + +-.+++
T Consensus 74 ~~~~~i~~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~~R~~d~~e~~~~~~rl 153 (204)
T 2v54_A 74 EFASFIQEQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINRNVGEEIYEDVTFQQKV 153 (204)
T ss_dssp TTHHHHHHHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTTCCSSSTTCCSHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHhhcCcccccHHHHHHHH
Confidence 22345677778899999883 33334444433223 36788887632222211 1 223444
Q ss_pred HHHHHHHHhhccccce-EEEecC-CHHHHHHHHHHHHHHh
Q psy933 230 AKESDILKSAYEHFFD-LTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 230 ~~~~~~ie~~~~~~fD-~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
..........+. .+ .+|.++ ++++.+++|.+++.+.
T Consensus 154 ~~~y~~~~~~~~--~~~~~Id~~~~~~~v~~~i~~~l~~~ 191 (204)
T 2v54_A 154 LQEYKKMIEEGD--IHWQIISSEFEEDVKKELIKNIVIEA 191 (204)
T ss_dssp HHHHHHHHTTCS--SCEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CcEEEEECCCCHHHHHHHHHHHHHHH
Confidence 443333322222 24 556555 8999999999998764
No 37
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.87 E-value=4.4e-09 Score=92.04 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=81.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchh-----hHHhccceeeEEeecC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-----SDIAANQYLEYGTHED 167 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~-----~~i~~~~fle~~~~~g 167 (330)
.+.|+|+||+|||||||++.|.+.+.- .+++.+.+. .....|.... .
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~-----------------------~~i~~d~~~~~~~~~~~~~g~~~~-----~ 69 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY-----------------------PFIEGDALHPPENIRKMSEGIPLT-----D 69 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC-----------------------CEEEGGGGCCHHHHHHHHHTCCCC-----H
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-----------------------EEEeCCcCcchhhHHHHhcCCCCC-----c
Confidence 468999999999999999999887521 122222221 1111222110 0
Q ss_pred ccccccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcCCC-CEEEEEccCccccccC----ch---HHHHHHHHHHHHH
Q psy933 168 AMYGTKLETIRRIHQEGKIAILDVE---PQALKILRTGEFS-PFVVFIAAPQLQNLSD----YD---GSLEKLAKESDIL 236 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~~~-p~vIfI~pps~~~l~~----~~---e~~~rl~~~~~~i 236 (330)
.........+.+.+..|..+|+|.. ......++..... ..+||+.+| .+.+.+ .. ...+.+....+..
T Consensus 70 ~~~~~~~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~-~e~~~~Rl~~R~~~~~~~~~~~~~~~~~ 148 (202)
T 3t61_A 70 DDRWPWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGS-ESVLAERMHHRTGHFMPSSLLQTQLETL 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECC-HHHHHHHHHHHHSSCCCHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCC-HHHHHHHHHHhhccCCCHHHHHHHHHhc
Confidence 0011123456666778899999854 5666667665433 468888876 333221 00 0001111111111
Q ss_pred HhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 237 KSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 237 e~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
+.-+....+++|.++ ++++++++|..+|...
T Consensus 149 ~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 149 EDPRGEVRTVAVDVAQPLAEIVREALAGLARL 180 (202)
T ss_dssp CCCTTSTTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 111334467888876 9999999999988754
No 38
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.86 E-value=8.9e-10 Score=98.04 Aligned_cols=173 Identities=12% Similarity=0.202 Sum_probs=92.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC-CCCcccCCeeE-------EEecccchhhHHhccceeeEEe
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS-PRSDEENGRAY-------YFISHDEMMSDIAANQYLEYGT 164 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~-pr~~E~~G~dy-------~fvs~~~f~~~i~~~~fle~~~ 164 (330)
+..|+|+||+||||||++++|.+.+.- ....+..++|. ++.++..|..+ .+++.+.|...+....+.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~-~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 83 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQL-AHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ 83 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCC-EECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC-ceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence 357999999999999999999988652 22333334443 22222222211 1444444544333221111000
Q ss_pred ecCc-ccc--ccHHHHHHHHHh----CCeEEEEeCHHH-HHHHHhcCC-----CCEEEEEccCcccccc--------Cch
Q psy933 165 HEDA-MYG--TKLETIRRIHQE----GKIAILDVEPQA-LKILRTGEF-----SPFVVFIAAPQLQNLS--------DYD 223 (330)
Q Consensus 165 ~~g~-~YG--ts~~~i~~v~~~----gk~~vldv~~~~-v~~L~~~~~-----~p~vIfI~pps~~~l~--------~~~ 223 (330)
..|. .+| .+.+.++.+.+. +.+.+|+++++. ++++..... ..+.+|+.||+.+.+. +..
T Consensus 84 ~~~~vidg~~~~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~~r~~d~~ 163 (222)
T 1zak_A 84 ENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLTQRFDDTE 163 (222)
T ss_dssp HTCEEEESCCCSHHHHHHHHTTTCCCSEEEEEECCHHHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCBCCTTCCT
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCCcccccCCccccccCCCcccccccccccCCCCCH
Confidence 1111 223 333444544433 346678888865 566654332 4577888899775432 123
Q ss_pred HHHH-HHHHHHH---HHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 224 GSLE-KLAKESD---ILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 224 e~~~-rl~~~~~---~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
+.++ |+..... .+...|.. ...+|.++ ++++++++|.++|...
T Consensus 164 ~~i~~Rl~~~~~~~~~l~~~y~~-~~~~Id~~~~~~ev~~~I~~~l~~~ 211 (222)
T 1zak_A 164 EKVKLRLETYYQNIESLLSTYEN-IIVKVQGDATVDAVFAKIDELLGSI 211 (222)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCC-CEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cEEEEECCCCHHHHHHHHHHHHHhh
Confidence 3443 4433322 32223443 34566555 8999999999998754
No 39
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.84 E-value=1.1e-09 Score=97.18 Aligned_cols=42 Identities=40% Similarity=0.911 Sum_probs=37.3
Q ss_pred hhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCcee
Q psy933 283 SDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWI 324 (330)
Q Consensus 283 ~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWv 324 (330)
+++++..|+|+||.|||||||+.|+.+|+++|.+++++||||
T Consensus 156 ~~~~~~~~~~~fd~vivNd~l~~a~~~l~~ii~~~~~~pqWv 197 (197)
T 3ney_A 156 SEAIRSQYAHYFDLSLVNNGVDETLKKLQEAFDQACSSPQWV 197 (197)
T ss_dssp HHHHHHHHGGGCSEEEEESCHHHHHHHHHHHHHHCCCCCC--
T ss_pred HHHHHHhhccCCCEEEECCCHHHHHHHHHHHHHHccCCCCCC
Confidence 356677799999999999999999999999999999999998
No 40
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.84 E-value=8.4e-09 Score=88.60 Aligned_cols=144 Identities=14% Similarity=0.188 Sum_probs=79.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC-cccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED-AMYG 171 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g-~~YG 171 (330)
.+.|+|+||+||||||+++.|.+.+. +.|++.+.+........+.+.....| ..|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~-----------------------~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~ 61 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK-----------------------RILYDSDKEIEKRTGADIAWIFEMEGEAGFR 61 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC-----------------------CCEEEHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC-----------------------CCEEEChHHHHHHcCCChhhHHHHhCHHHHH
Confidence 46899999999999999999987652 33555555443332222211111111 2233
Q ss_pred ccH-HHHHHHHHhCCeEEEEe------CHHHHHHHHhcCCCCEEEEEccCcc---ccc--cC-------ch----HHHHH
Q psy933 172 TKL-ETIRRIHQEGKIAILDV------EPQALKILRTGEFSPFVVFIAAPQL---QNL--SD-------YD----GSLEK 228 (330)
Q Consensus 172 ts~-~~i~~v~~~gk~~vldv------~~~~v~~L~~~~~~p~vIfI~pps~---~~l--~~-------~~----e~~~r 228 (330)
... ..+..+.. ...+++.. +......|+.. ..+||+.+|.- +++ +. .+ +.+++
T Consensus 62 ~~~~~~~~~~~~-~~~~vi~~gg~~~~~~~~~~~l~~~---~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~ 137 (185)
T 3trf_A 62 RREREMIEALCK-LDNIILATGGGVVLDEKNRQQISET---GVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQ 137 (185)
T ss_dssp HHHHHHHHHHHH-SSSCEEECCTTGGGSHHHHHHHHHH---EEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-cCCcEEecCCceecCHHHHHHHHhC---CcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHH
Confidence 222 22333333 33344443 45555556553 37888887622 122 10 11 12233
Q ss_pred HHHHHHHHHhhccccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 229 LAKESDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 229 l~~~~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
+..+.. ..|..++|++|.++ ++++++++|.+.+..
T Consensus 138 ~~~~r~---~~y~~~ad~~Idt~~~~~~e~~~~I~~~l~~ 174 (185)
T 3trf_A 138 LNEIRK---PLYQAMADLVYPTDDLNPRQLATQILVDIKQ 174 (185)
T ss_dssp HHHHHH---HHHHHHCSEEEECTTCCHHHHHHHHHHHSCC
T ss_pred HHHHHH---HHHhhcCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 333322 23556689999988 589999999887653
No 41
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.83 E-value=5.8e-09 Score=94.20 Aligned_cols=162 Identities=14% Similarity=0.194 Sum_probs=92.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcccee-eEEe---ecC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYL-EYGT---HED 167 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fl-e~~~---~~g 167 (330)
++..|+|.||+||||||++++|.+.++. +..+ .+|+.|..++. .+.+.+.+..+..+ ...+ +..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~-~~~~~p~~~~~---------g~~i~~~~~~~~~~~~~~~~ll~~a 92 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK--DYDV-IMTREPGGVPT---------GEEIRKIVLEGNDMDIRTEAMLFAA 92 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCE-EEECTTTTCHH---------HHHHHHHTTC---CCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCc-eeecCCCCCch---------HHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 4578999999999999999999998764 3333 46777765432 13455555554431 1110 111
Q ss_pred ccccccHHHHHHHHHhCCeEEEE---------------eCHHHHHHHHh---cCCCC-EEEEEccCcccccc----C---
Q psy933 168 AMYGTKLETIRRIHQEGKIAILD---------------VEPQALKILRT---GEFSP-FVVFIAAPQLQNLS----D--- 221 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vld---------------v~~~~v~~L~~---~~~~p-~vIfI~pps~~~l~----~--- 221 (330)
+.+....+.|...+++|+++|+| ++...+..|.. ..+.| .+||+..|. +.+. .
T Consensus 93 ~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~-e~~~~R~~~R~~ 171 (229)
T 4eaq_A 93 SRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSA-EVGRERIIKNSR 171 (229)
T ss_dssp HHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHhcCC
Confidence 22222223356677899999999 45554444443 33444 477887663 2221 1
Q ss_pred ----ch-H--H-HHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 222 ----YD-G--S-LEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 222 ----~~-e--~-~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
.+ + + .+++.+....+...|.. ...+|.++ ++++..++|.++|...
T Consensus 172 ~~dr~e~~~~~~~~rv~~~y~~l~~~~~~-~~~vIDa~~s~eev~~~I~~~l~~~ 225 (229)
T 4eaq_A 172 DQNRLDQEDLKFHEKVIEGYQEIIHNESQ-RFKSVNADQPLENVVEDTYQTIIKY 225 (229)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTTTCTT-TEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CccchhhhhHHHHHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 01 1 1 23444444444333332 23455555 9999999999998765
No 42
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.81 E-value=1.1e-08 Score=92.60 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=96.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCc---cccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE---ee
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKY---AYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG---TH 165 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f---~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~---~~ 165 (330)
++..|+|.||+||||||++++|.+.++..| +..+ .+||.|+.++. | +.+.+.+..+.+-.+. -|
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v-~~~rep~~t~~-g--------~~ir~~l~~~~~~~~~~~llf 93 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHV-VVTREPGGTRL-G--------ETLREILLNQPMDLETEALLM 93 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCE-EEEESSSSSHH-H--------HHHHHHHHHSCCCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceee-eeecCCCCChH-H--------HHHHHHHHcCCCCHHHHHHHH
Confidence 357899999999999999999998876432 3344 57898865432 2 3456666655422121 13
Q ss_pred cCccccccHHHHHHHHHhCCeEEEEe---------------CHHHHHHHHh---cCCCC-EEEEEccCcc---ccccCc-
Q psy933 166 EDAMYGTKLETIRRIHQEGKIAILDV---------------EPQALKILRT---GEFSP-FVVFIAAPQL---QNLSDY- 222 (330)
Q Consensus 166 ~g~~YGts~~~i~~v~~~gk~~vldv---------------~~~~v~~L~~---~~~~p-~vIfI~pps~---~~l~~~- 222 (330)
..+.|..-...|+..+++|+++|+|= +.+-+..|.. ..+.| .+||+..|.- +++...
T Consensus 94 ~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 94 FAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 44556655566788889999999983 2333444432 23444 4788886532 222211
Q ss_pred -----h---HH-HHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 223 -----D---GS-LEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 223 -----~---e~-~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
+ .+ ++++.+....+...|+. --.+|.++ ++++..++|.++|+.|
T Consensus 174 ~~dr~E~~~~ef~~rv~~~Y~~la~~~~~-~~~vIDa~~s~eeV~~~I~~~l~~l 227 (227)
T 3v9p_A 174 MPDKFESESDAFFARTRAEYLRRAQEAPH-RFVIVDSSEPIAQIRKQLEGVLAAL 227 (227)
T ss_dssp CC---CCHHHHHHHHHHHHHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHHHC
T ss_pred CccchhhhhHHHHHHHHHHHHHHHHHhcC-CEEEEeCCCCHHHHHHHHHHHHHhC
Confidence 1 11 24444444444434432 23556555 9999999999988764
No 43
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.77 E-value=1.2e-08 Score=89.28 Aligned_cols=167 Identities=14% Similarity=0.080 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCC--eeEEEecccchhhHHhccceeeEEeecCcc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENG--RAYYFISHDEMMSDIAANQYLEYGTHEDAM 169 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G--~dy~fvs~~~f~~~i~~~~fle~~~~~g~~ 169 (330)
++..|+|+|++||||||+++.|.+.+...+ ..+ ..+|.|..+..-| ...+|.+...|........ +..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~-~~v-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~r 79 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAG-HRA-ELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLL------FSANR 79 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTT-CCE-EEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHH------HHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcC-CcE-EEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHH------HHHHH
Confidence 357899999999999999999998754222 222 3456553211101 0111111111111100000 00111
Q ss_pred ccccHHHHHHHHHhCCeEEEEeC---------------HHHHHHHHhcC-CCCEEEEEccCccc---cccC------chH
Q psy933 170 YGTKLETIRRIHQEGKIAILDVE---------------PQALKILRTGE-FSPFVVFIAAPQLQ---NLSD------YDG 224 (330)
Q Consensus 170 YGts~~~i~~v~~~gk~~vldv~---------------~~~v~~L~~~~-~~p~vIfI~pps~~---~l~~------~~e 224 (330)
|.. ...+...+.+|..+|+|-. .+.+..+.... ....+||+.+|.-. ++.. ..+
T Consensus 80 ~~~-~~~i~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl~r~~~~~~~~~ 158 (215)
T 1nn5_A 80 WEQ-VPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRGAFGHERYENGA 158 (215)
T ss_dssp HTT-HHHHHHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-----CTTCSHH
T ss_pred HHH-HHHHHHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHhccCccccchHH
Confidence 222 2456777788999999832 33333332221 23468888876321 1211 111
Q ss_pred HHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933 225 SLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEELH 268 (330)
Q Consensus 225 ~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~ 268 (330)
-.+++......+...+. .-.++|.|+ ++++++++|.+++..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~-~~~~~Id~~~~~e~~~~~i~~~l~~~l 202 (215)
T 1nn5_A 159 FQERALRCFHQLMKDTT-LNWKMVDASKSIEAVHEDIRVLSEDAI 202 (215)
T ss_dssp HHHHHHHHHHHHTTCTT-SCEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC-CCEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 12333333232222221 123566655 89999999999987653
No 44
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.76 E-value=5.9e-09 Score=90.09 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=83.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe---ecCcccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT---HEDAMYG 171 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~---~~g~~YG 171 (330)
.|+|.|++||||||++++|.+.++. .+..+ ++||.|...+. -+.+.+.+..+.+-.+.+ +..+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~v-~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 70 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKV-ILKREPGGTET---------GEKIRKILLEEEVTPKAELFLFLASRNL 70 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-CCC-E-EEEESSCSSHH---------HHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeE-EEeeCCCCCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987532 12333 46676543321 122333333333322211 1122333
Q ss_pred ccHHHHHHHHHhCCeEEEE---------------eCHHHHHHHHh---cCC-CCEEEEEccCcccc---cc-----CchH
Q psy933 172 TKLETIRRIHQEGKIAILD---------------VEPQALKILRT---GEF-SPFVVFIAAPQLQN---LS-----DYDG 224 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vld---------------v~~~~v~~L~~---~~~-~p~vIfI~pps~~~---l~-----~~~e 224 (330)
.... +...+.+|..+++| ++...+..+.. ... .-.+||+.+|.-.. +. +.++
T Consensus 71 ~~~~-i~~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~~~~~~ 149 (197)
T 2z0h_A 71 LVTE-IKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKRE 149 (197)
T ss_dssp HHHH-HTTC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CCCCCHH
T ss_pred HHHH-HHHHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCHHHHHHHHhccCcccHHH
Confidence 3333 55566788999888 44554444432 222 34577887763211 11 1122
Q ss_pred HHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 225 SLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 225 ~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
-++++......+...+.. ...+|.|+ +++++.+++..+++.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~-~~~~Id~~~~~e~~~~~i~~~l~~~ 192 (197)
T 2z0h_A 150 FLERVREGYLVLAREHPE-RIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp HHHHHHHHHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 234444444444433322 23556665 8999999999887653
No 45
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.74 E-value=4.4e-08 Score=86.38 Aligned_cols=36 Identities=22% Similarity=0.375 Sum_probs=26.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS 131 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~ 131 (330)
.|+|+||+||||||++++|.+.+. ........++|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~~r~ 37 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG-IPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS-CCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CcEEeHHHHHHH
Confidence 488999999999999999988764 222333345554
No 46
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.73 E-value=3.1e-08 Score=86.74 Aligned_cols=151 Identities=13% Similarity=0.096 Sum_probs=78.5
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchh-----hHHhccceeeEEe
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-----SDIAANQYLEYGT 164 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~-----~~i~~~~fle~~~ 164 (330)
...+..|+|+||+|||||||++.|...... .+++.+.+. .....|.....
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~-----------------------~~i~~d~~~~~~~~~~~~~g~~~~~-- 80 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGL-----------------------EFAEADAFHSPENIATMQRGIPLTD-- 80 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCC-----------------------EEEEGGGGSCHHHHHHHHTTCCCCH--
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCC-----------------------eEEcccccccHHHHHHHhcCCCCCC--
Confidence 335679999999999999999999876521 111111111 11111211110
Q ss_pred ecCc-cccccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcCCCCEEEEEccCcccccc----Cc---hHHHHHHHHHH
Q psy933 165 HEDA-MYGTKLETIRRIHQEGKIAILDVE---PQALKILRTGEFSPFVVFIAAPQLQNLS----DY---DGSLEKLAKES 233 (330)
Q Consensus 165 ~~g~-~YGts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~~~p~vIfI~pps~~~l~----~~---~e~~~rl~~~~ 233 (330)
.... .+..-...+...+..|..+|++.. ......++.......+||+.+| .+.+. .. ......+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~-~e~l~~Rl~~R~~~~~~~~~l~~~~ 159 (200)
T 4eun_A 81 EDRWPWLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGP-AEVIKGRMSKREGHFMPASLLQSQL 159 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECC-HHHHHHHHTTCSCCSSCGGGHHHHH
T ss_pred cccccHHHHHHHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCC-HHHHHHHHHhcccCCCCHHHHHHHH
Confidence 0000 011111223334467888888874 3334445444344578899987 33332 10 00011111112
Q ss_pred HHHHhhccccceEEEecC-CHHHHHHHHHHHHHH
Q psy933 234 DILKSAYEHFFDLTVVNN-DIEETIGILEKAIEE 266 (330)
Q Consensus 234 ~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~ 266 (330)
+..+.-|....|++|.|+ ++++++++|.+++..
T Consensus 160 ~~~~~~~~~~~~~~Id~~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 160 ATLEALEPDESGIVLDLRQPPEQLIERALTWLDI 193 (200)
T ss_dssp HHCCCCCTTSCEEEEETTSCHHHHHHHHHHHHCC
T ss_pred HHhCCCCCCCCeEEEECCCCHHHHHHHHHHHHHh
Confidence 222223455579999887 899999999988764
No 47
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.73 E-value=2.3e-08 Score=86.25 Aligned_cols=162 Identities=12% Similarity=0.181 Sum_probs=81.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC-CCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS-PRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~-pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
++.|+|+||+||||||+++.|.+.+.-.+ .......|. ++.++..| ..+...+..|.++.. ...+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~-i~~d~~~~~~~~~~~~~~--------~~i~~~~~~g~~~~~----~~~~~ 75 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTH-LSTGDLLRSEVSSGSARG--------KKLSEIMEKGQLVPL----ETVLD 75 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEE-EEHHHHHHHHHHTTCHHH--------HHHHHHHHTTCCCCH----HHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeE-EcHHHHHHHHHHcCChHH--------HHHHHHHHcCCcCCH----HHHHH
Confidence 46899999999999999999988754211 111111111 11111111 223333344443321 11233
Q ss_pred ccHHHHHHHHHhCCeEEEEeCH---HHHHHHHhcCCCC-EEEEEccCcccccc---C----------chHHH-HHHHHHH
Q psy933 172 TKLETIRRIHQEGKIAILDVEP---QALKILRTGEFSP-FVVFIAAPQLQNLS---D----------YDGSL-EKLAKES 233 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~~---~~v~~L~~~~~~p-~vIfI~pps~~~l~---~----------~~e~~-~rl~~~~ 233 (330)
.-...+...++.|+.+|+|..+ ..++.+......| .+||+.+|.-..++ . ..+.+ +|+....
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~ 155 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGETSGRVDDNEETIKKRLETYY 155 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHTSSSCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCCcCCCCCCCHHHHHHHHHHHH
Confidence 3345555556678999999643 3333333322333 78899876322111 0 11222 2222211
Q ss_pred HH---HHhhccc-cceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 234 DI---LKSAYEH-FFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 234 ~~---ie~~~~~-~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
.. +...|.. -+-.+|.|+ ++++++++|..+++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~Id~~~~~e~v~~~i~~~l~~~ 194 (196)
T 2c95_A 156 KATEPVIAFYEKRGIVRKVNAEGSVDSVFSQVCTHLDAL 194 (196)
T ss_dssp HHTHHHHHHHHHHTCEEEEECCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHHHHHHh
Confidence 11 1111322 112346555 8999999999988754
No 48
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.72 E-value=3e-08 Score=86.75 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++.|+|+||+|||||||++.|.+.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999865
No 49
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.70 E-value=6.5e-09 Score=97.71 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=44.8
Q ss_pred cccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCceeecc
Q psy933 279 LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS 327 (330)
Q Consensus 279 ~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWvp~~ 327 (330)
..+.|.++|..|+|+||.+|+||||++|+.+|+++|...+++|||||++
T Consensus 244 rl~~a~~~e~~~~~~fd~vivNd~le~a~~~l~~ii~~~~~~~~Wvp~~ 292 (295)
T 1kjw_A 244 AFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPAR 292 (295)
T ss_dssp HHHHHHHHHHHHGGGCSEEECCSSHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred HHHHHHHHHHhccccCeEEEECcCHHHHHHHHHHHHHhccCCCEEeeCC
Confidence 3455667888999999999999999999999999999999999999986
No 50
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.70 E-value=5.6e-08 Score=88.49 Aligned_cols=165 Identities=14% Similarity=0.227 Sum_probs=97.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc----ce---eeEEe
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN----QY---LEYGT 164 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~----~f---le~~~ 164 (330)
++..|+|.||+||||||++++|.+.+.. .+..+.++||.|+..+. | +.+.+.+..+ .+ .|.--
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep~~t~~-g--------~~ir~~l~~~~~~~~~~~~~e~lL 95 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTREPGGTLL-A--------EKLRALVKEEHPGEELQDITELLL 95 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHH-H--------HHHHHHHHSCCTTSCCCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeecCCCCCHH-H--------HHHHHHHhhCCCcccCCHHHHHHH
Confidence 3579999999999999999999887653 33443578998864322 1 3444444311 11 11111
Q ss_pred ecCccccccHHHHHHHHHhCCeEEEEe---------------CHHHHHHHHh---cCCCC-EEEEEccCcc---ccccC-
Q psy933 165 HEDAMYGTKLETIRRIHQEGKIAILDV---------------EPQALKILRT---GEFSP-FVVFIAAPQL---QNLSD- 221 (330)
Q Consensus 165 ~~g~~YGts~~~i~~v~~~gk~~vldv---------------~~~~v~~L~~---~~~~p-~vIfI~pps~---~~l~~- 221 (330)
|..+.+..-...|+..+++|+++|.|= +.+-+..|.. ..+.| .+||+..|.- +++..
T Consensus 96 f~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R 175 (236)
T 3lv8_A 96 VYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERARGR 175 (236)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 223344444455777888999999982 2333344433 23444 5788887632 12211
Q ss_pred -----ch----HHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933 222 -----YD----GSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEELH 268 (330)
Q Consensus 222 -----~~----e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~~ 268 (330)
.+ +-++++.+....+...++. ..+|.++ ++++..++|.++|+..-
T Consensus 176 ~~~dr~E~~~~~~~~rv~~~y~~la~~~~~--~~vIDa~~sieeV~~~I~~~l~~~l 230 (236)
T 3lv8_A 176 GELDRIEKMDISFFERARERYLELANSDDS--VVMIDAAQSIEQVTADIRRALQDWL 230 (236)
T ss_dssp -CCCTTTTSCHHHHHHHHHHHHHHHHHCTT--EEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHCCC--EEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 01 2234555555555444443 5566665 99999999999998653
No 51
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.68 E-value=4.8e-08 Score=86.01 Aligned_cols=24 Identities=29% Similarity=0.648 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+||+||||||+++.|.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 52
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.68 E-value=1.3e-07 Score=81.02 Aligned_cols=152 Identities=13% Similarity=0.193 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchh-hHHh-ccceeeEEeecC---
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIA-ANQYLEYGTHED--- 167 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~-~~i~-~~~fle~~~~~g--- 167 (330)
+..|+|+||+||||||+++.|.+.+.. .|.+|.+++..++- .... .|.+..+.++..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~------------------~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~ 64 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRK------------------EGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 64 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHT------------------TTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh------------------cCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCH
Confidence 368999999999999999999986542 24456666654432 2221 222222211111
Q ss_pred ---ccccccH-HHHHHHHHhCCeEEEEeCHH-----HH------HHHHhcCCCCEEEEEccCcccc----ccC--c----
Q psy933 168 ---AMYGTKL-ETIRRIHQEGKIAILDVEPQ-----AL------KILRTGEFSPFVVFIAAPQLQN----LSD--Y---- 222 (330)
Q Consensus 168 ---~~YGts~-~~i~~v~~~gk~~vldv~~~-----~v------~~L~~~~~~p~vIfI~pps~~~----l~~--~---- 222 (330)
..+.... +.+... ..+..+|+|.... +. ..++.... .++|||.+|.-.. +.. .
T Consensus 65 ~~~~~~~~~~~~~i~~~-~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~l~~~~~~~~~rRl~~~~R~r~~ 142 (192)
T 1kht_A 65 ETQKRIQKMAGRKIAEM-AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNP-DLIIVVETTGDEILMRRMSDETRVRDL 142 (192)
T ss_dssp HHHHHHHHHHHHHHHHH-HTTSCEEEECCSEEEETTEEEESSCHHHHHHHCC-SEEEEEECCHHHHHHHHHTSSSCSSSC
T ss_pred HHHHHHHHHHHHHHHhh-ccCCeEEEccceeccccccccccCcHHHHhccCC-CEEEEEeCCHHHHHHHHhhhcccCCCc
Confidence 0111111 113222 3466788876321 11 23333222 4689999875322 211 1
Q ss_pred --hHHHH---HHHHHHHHHHhhccccceEEEecCC--HHHHHHHHHHHH
Q psy933 223 --DGSLE---KLAKESDILKSAYEHFFDLTVVNND--IEETIGILEKAI 264 (330)
Q Consensus 223 --~e~~~---rl~~~~~~ie~~~~~~fD~vI~N~d--le~a~~~L~~~i 264 (330)
.+.+. ++.+........|....+++|.|.+ +++++++|.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 143 DTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHh
Confidence 12221 1111111111224344566677777 999999998776
No 53
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.66 E-value=1.6e-07 Score=79.98 Aligned_cols=148 Identities=14% Similarity=0.244 Sum_probs=76.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhH--H---hccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD--I---AANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~--i---~~~~fle~~~~~ 166 (330)
.+..|+|+||+|||||||++.|...... .+++.+.+... + ..|.-+. ...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~-----------------------~~i~~d~~~~~~~~~~~~~g~~~~--~~~ 61 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHA-----------------------AFLDGDFLHPRRNIEKMASGEPLN--DDD 61 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTC-----------------------EEEEGGGGCCHHHHHHHHTTCCCC--HHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCc-----------------------EEEeCccccchHHHHHhhcCcCCC--ccc
Confidence 3468999999999999999999875421 12222221100 0 0111000 000
Q ss_pred Ccccccc-HHHHHHHHHhCCeEEEEeC---HHHHHHHHhcCCCCEEEEEccCcccccc----CchH---HHHHHHHHHHH
Q psy933 167 DAMYGTK-LETIRRIHQEGKIAILDVE---PQALKILRTGEFSPFVVFIAAPQLQNLS----DYDG---SLEKLAKESDI 235 (330)
Q Consensus 167 g~~YGts-~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~~~p~vIfI~pps~~~l~----~~~e---~~~rl~~~~~~ 235 (330)
+..+-+. ...+...+..|..+|++.. ......++.......+||+.+|. +.+. .... ....+......
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~~~-e~~~~R~~~R~~~~~~~~~~~~~~~~ 140 (175)
T 1knq_A 62 RKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDF-DVIESRLKARKGHFFKTQMLVTQFET 140 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEECCH-HHHHHHHHTSTTCCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEECCH-HHHHHHHHhccCCCCchHHHHHHHHh
Confidence 0000011 1223334456888998864 44555666544444799999763 3221 1100 00111111111
Q ss_pred HHhh-ccccceEEEecC-CHHHHHHHHHHHHH
Q psy933 236 LKSA-YEHFFDLTVVNN-DIEETIGILEKAIE 265 (330)
Q Consensus 236 ie~~-~~~~fD~vI~N~-dle~a~~~L~~~i~ 265 (330)
++.. |....|++|.|+ +++++.++|.+.+.
T Consensus 141 ~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l~ 172 (175)
T 1knq_A 141 LQEPGADETDVLVVDIDQPLEGVVASTIEVIK 172 (175)
T ss_dssp CCCCCTTCTTEEEEECSSCHHHHHHHHHHHHH
T ss_pred hhCcccCCCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 1222 445579999888 89999999988775
No 54
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.60 E-value=4.1e-08 Score=84.11 Aligned_cols=27 Identities=22% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.+.|+|+|++||||||+++.|.+.+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988653
No 55
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.60 E-value=1.1e-07 Score=83.04 Aligned_cols=162 Identities=11% Similarity=0.119 Sum_probs=83.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceee----EEeecC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLE----YGTHED 167 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle----~~~~~g 167 (330)
+++.|+|+|++||||||+++.|.+.+...+ ..+ .++|.|..++..|. .+...+..+.-+. ..-+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~-~~~-~~~~~~~~~~~~g~--------~i~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN-VEV-KHLYFPNRETGIGQ--------IISKYLKMENSMSNETIHLLFSA 78 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT-CCE-EEEESSCTTSHHHH--------HHHHHHTTSSCCCHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC-CcE-EEEecCCCCCcHHH--------HHHHHHhcCCCCCHHHHHHHHHH
Confidence 357899999999999999999998754222 222 45776654322111 1111111110000 000000
Q ss_pred ccccccHHHHHHHHHhCCeEEEEeCHHH---H---------HHHHh--cC--CCCEEEEEccCcccccc---Cc-----h
Q psy933 168 AMYGTKLETIRRIHQEGKIAILDVEPQA---L---------KILRT--GE--FSPFVVFIAAPQLQNLS---DY-----D 223 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vldv~~~~---v---------~~L~~--~~--~~p~vIfI~pps~~~l~---~~-----~ 223 (330)
+.+.. ...+...+..|..+|+|-.+.+ . ..+.. .. ..-.+||+.+|.-..++ .. +
T Consensus 79 ~~~~~-~~~i~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~r~~~ 157 (212)
T 2wwf_A 79 NRWEH-MNEIKSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRSDYGEEIYEK 157 (212)
T ss_dssp HHHTT-HHHHHHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGSTTTTSSTTCS
T ss_pred HHHHH-HHHHHHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhhccCcccccH
Confidence 11111 1346667788999999876532 1 11211 11 23468888876432222 10 1
Q ss_pred HHH-HHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 224 GSL-EKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 224 e~~-~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
+++ +++....... .....+++|.|+ ++++++++|.+++.++
T Consensus 158 ~~~~~~~~~~~~~~---~~~~~~~~Id~~~~~~~~~~~i~~~l~~~ 200 (212)
T 2wwf_A 158 VETQKKIYETYKHF---AHEDYWINIDATRKIEDIHNDIVKEVTKI 200 (212)
T ss_dssp HHHHHHHHHHGGGG---TTCTTEEEEECSSCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHH---hccCCEEEEECCCCHHHHHHHHHHHHHHh
Confidence 111 2222111111 113347888777 8999999999998765
No 56
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.57 E-value=2.9e-08 Score=103.86 Aligned_cols=48 Identities=21% Similarity=0.418 Sum_probs=44.5
Q ss_pred ccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhcCCCceeecc
Q psy933 280 AKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVS 327 (330)
Q Consensus 280 ~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~~~~qWvp~~ 327 (330)
.+.|.++|..|+|+||.+|+||||++||.+|+++|+.++++|||||++
T Consensus 671 l~~a~~~e~~~~~~fd~vi~Nd~l~~a~~~l~~~i~~~~~~~~Wvp~~ 718 (721)
T 2xkx_A 671 FDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPAR 718 (721)
T ss_pred HHHHHHHHHhccccCcEEEECcCHHHHHHHHHHHHHhccCCcEEeecc
Confidence 445667899999999999999999999999999999999999999986
No 57
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.56 E-value=6.6e-08 Score=87.72 Aligned_cols=61 Identities=16% Similarity=0.185 Sum_probs=39.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC-CCCcccCCeeEEEecccchhhHHhccceeeE
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS-PRSDEENGRAYYFISHDEMMSDIAANQYLEY 162 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~-pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~ 162 (330)
+..|+|+||+||||||++++|.+.+. .....+..++|. .+.++..| ..+.+.+..|.++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g-~~~is~~~~~r~~~~~~~~~g--------~~i~~~~~~g~~~~~ 90 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC-YCHLSTGDLLREAAEKKTELG--------LKIKNIINEGKLVDD 90 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHHHHHHTTSSSHHH--------HHHHHHHHTTCCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-CeEEecHHHHHHHHhccchHH--------HHHHHHHhcCCCCcH
Confidence 35799999999999999999998764 334445566665 23332222 245555556665543
No 58
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.54 E-value=6.9e-08 Score=83.43 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++.|+|+||+||||||+++.|.+.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998753
No 59
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.51 E-value=9.6e-08 Score=81.00 Aligned_cols=100 Identities=20% Similarity=0.299 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc--ce-eeEEee-cCc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN--QY-LEYGTH-EDA 168 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~--~f-le~~~~-~g~ 168 (330)
++.|+|+||+||||||++++|.+... . +.+++.+.+...+... .+ -.+... ...
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~-~---------------------~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~ 59 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP-G---------------------FYNINRDDYRQSIMAHEERDEYKYTKKKEGI 59 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST-T---------------------EEEECHHHHHHHHTTSCCGGGCCCCHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC-C---------------------cEEecHHHHHHHhhCCCccchhhhchhhhhH
Confidence 45799999999999999999987311 1 2334433333332211 00 000000 011
Q ss_pred cccccHHHHHHHH---HhCCeEEEEeCHH---HHHHHH----hcCCCCEEEEEccC
Q psy933 169 MYGTKLETIRRIH---QEGKIAILDVEPQ---ALKILR----TGEFSPFVVFIAAP 214 (330)
Q Consensus 169 ~YGts~~~i~~v~---~~gk~~vldv~~~---~v~~L~----~~~~~p~vIfI~pp 214 (330)
.+......+...+ ..|+.+|+|..+. -...++ ..+....+||+.+|
T Consensus 60 ~~~~~~~~~~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~ 115 (181)
T 1ly1_A 60 VTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVP 115 (181)
T ss_dssp HHHHHHHHHHHHHTSCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCC
T ss_pred HHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCC
Confidence 3344456677778 7899999986532 222232 23444578999876
No 60
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.48 E-value=2.8e-07 Score=80.14 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++.|+|.|++||||||+++.|.+.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999998765
No 61
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.48 E-value=5.2e-07 Score=77.46 Aligned_cols=99 Identities=14% Similarity=0.162 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc-ee--eEE-eecCc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ-YL--EYG-THEDA 168 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~-fl--e~~-~~~g~ 168 (330)
++.|+|+|++||||||+++.|.+.+. + .+++.+.+...+..+. +- ++. .....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~--~---------------------~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 61 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR--L---------------------PLLSKDAFKEVMFDGLGWSDREWSRRVGAT 61 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT--C---------------------CEEEHHHHHHHHHHHHCCCSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC--C---------------------eEecHHHHHHHHHHhcCccchHHHHHhhHH
Confidence 46899999999999999999987642 1 1233333332222110 00 000 00111
Q ss_pred cccccHHHHHHHHHhCCeEEEEeCHH------HHHHHHhcCCCC-EEEEEccC
Q psy933 169 MYGTKLETIRRIHQEGKIAILDVEPQ------ALKILRTGEFSP-FVVFIAAP 214 (330)
Q Consensus 169 ~YGts~~~i~~v~~~gk~~vldv~~~------~v~~L~~~~~~p-~vIfI~pp 214 (330)
.|+.....+..+++.|..+|+|.... .+..|......| .+||+.+|
T Consensus 62 ~~~~~~~~~~~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~ 114 (193)
T 2rhm_A 62 AIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVAS 114 (193)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence 23444455667788999999997762 122355544445 57888875
No 62
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.47 E-value=9.3e-08 Score=81.86 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.|+|+||+||||||+++.|.+.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 63
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.46 E-value=8e-07 Score=79.43 Aligned_cols=163 Identities=14% Similarity=0.169 Sum_probs=91.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEE---e---ec
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG---T---HE 166 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~---~---~~ 166 (330)
+..|+|.||+||||||++++|.+.+.. -+..+ ++||.|+..+. | +.+.+.+..+..-+.. + |.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v-~~~~~p~~~~~-g--------~~i~~~l~~~~~~~~~~~~~~llf~ 74 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEV-QLTREPGGTPL-A--------ERIRELLLAPSDEPMAADTELLLMF 74 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCE-EEEESSCSSHH-H--------HHHHHHHHSCCSSCCCHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCc-ccccCCCCCHH-H--------HHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 568999999999999999999887753 23334 68898864322 1 3344444444211111 0 11
Q ss_pred CccccccHHHHHHHHHhCCeEEEEeC---------------HHHHHHHHh---cCCCC-EEEEEccCcc---ccccC---
Q psy933 167 DAMYGTKLETIRRIHQEGKIAILDVE---------------PQALKILRT---GEFSP-FVVFIAAPQL---QNLSD--- 221 (330)
Q Consensus 167 g~~YGts~~~i~~v~~~gk~~vldv~---------------~~~v~~L~~---~~~~p-~vIfI~pps~---~~l~~--- 221 (330)
.+.+..-...|+..+++|+++|.|=- .+-+..|.. ..+.| .+||+..|.- +++..
T Consensus 75 a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~ 154 (213)
T 4edh_A 75 AARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAARGR 154 (213)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 22222223446667788999998842 233333332 23444 4788886622 11211
Q ss_pred ---ch----HHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 222 ---YD----GSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 222 ---~~----e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
.+ +-++++.+....+...|+. -..+|.++ ++++..+++.++|...
T Consensus 155 ~dr~E~~~~~~~~rv~~~y~~l~~~~~~-~~~vIDa~~s~eeV~~~I~~~l~~~ 207 (213)
T 4edh_A 155 LDRFEQEDRRFFEAVRQTYLQRAAQAPE-RYQVLDAGLPLAEVQAGLDRLLPNL 207 (213)
T ss_dssp CCTTTTSCHHHHHHHHHHHHHHHHHCTT-TEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHCCC-cEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 11 1234555554444434432 24556655 9999999999888754
No 64
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.46 E-value=1.7e-06 Score=75.27 Aligned_cols=161 Identities=15% Similarity=0.183 Sum_probs=79.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC--CCCcccCCeeEEEecccchhhHHhccceeeEEeecCcc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS--PRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM 169 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~--pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~ 169 (330)
..+.|+|+|++||||||++++|.+.+.- .........|. .+.++..| +.+...+..|.+... ...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~-~~i~~d~~~~~~~~~~~~~~~--------~~i~~~~~~g~~~~~----~~~ 80 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSF-VHLSAGDLLRAEQGRAGSQYG--------ELIKNCIKEGQIVPQ----EIT 80 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSC-EEEEHHHHHHHHHHSTTCSCH--------HHHHHHHHTTCCCCH----HHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc-eEEeHHHHHHHHHhccCCHHH--------HHHHHHHHcCCcCCH----HHH
Confidence 4468999999999999999999987641 11111112221 11121111 122333334443211 112
Q ss_pred ccccHHHHHHHHHhC-CeEEEEeC---HHHHHHHHhcCC-CCEEEEEccCcccccc---C----------chHHHH-HHH
Q psy933 170 YGTKLETIRRIHQEG-KIAILDVE---PQALKILRTGEF-SPFVVFIAAPQLQNLS---D----------YDGSLE-KLA 230 (330)
Q Consensus 170 YGts~~~i~~v~~~g-k~~vldv~---~~~v~~L~~~~~-~p~vIfI~pps~~~l~---~----------~~e~~~-rl~ 230 (330)
+..-.+.+..+++.| ..+|++-. .+....+..... ..++|||.+|.-..++ . ..+.++ |+.
T Consensus 81 ~~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R~~~~~~~~~~~e~~~~r~~ 160 (203)
T 1ukz_A 81 LALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLERGKTSGRSDDNIESIKKRFN 160 (203)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHHHHCCTTCSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccccCCCCCCCHHHHHHHHH
Confidence 233345566667777 46676643 333334443322 3478999987422221 0 111221 211
Q ss_pred HH---HHHHHhhccccceEE--EecC-CHHHHHHHHHHHHHH
Q psy933 231 KE---SDILKSAYEHFFDLT--VVNN-DIEETIGILEKAIEE 266 (330)
Q Consensus 231 ~~---~~~ie~~~~~~fD~v--I~N~-dle~a~~~L~~~i~~ 266 (330)
.- ...+...|. ..|.+ |.|+ ++++++++|.+++..
T Consensus 161 ~~~~~~~~~~~~~~-~~~~vi~id~~~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 161 TFKETSMPVIEYFE-TKSKVVRVRCDRSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHTTHHHHHHHH-TTTCEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHH-hcCcEEEEECCCCHHHHHHHHHHHHhc
Confidence 10 111111122 23433 4555 899999999998865
No 65
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.40 E-value=1.1e-06 Score=75.23 Aligned_cols=160 Identities=19% Similarity=0.157 Sum_probs=80.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEe---ecCcccc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGT---HEDAMYG 171 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~---~~g~~YG 171 (330)
.|+|+|++||||||+++.|.+.++. .+..+ +.|+.|...+. | +.+.+.+..|.+-.... +..+.|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~-~g~~~-i~~d~~~~~~~-~--------~~i~~~~~~g~~~~~~~~~~~~~~~~~ 70 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ-KGYFV-SLYREPGGTKV-G--------EVLREILLTEELDERTELLLFEASRSK 70 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH-TTCCE-EEEESSCSSHH-H--------HHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeE-EEEeCCCCCch-H--------HHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999986531 11221 23454432210 1 12333333332211000 0001122
Q ss_pred ccHHHHHHHHHhCCeEEEEeC---------------HHHHHHHH---hcC-CCCEEEEEccCccccc---cC-----chH
Q psy933 172 TKLETIRRIHQEGKIAILDVE---------------PQALKILR---TGE-FSPFVVFIAAPQLQNL---SD-----YDG 224 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~---------------~~~v~~L~---~~~-~~p~vIfI~pps~~~l---~~-----~~e 224 (330)
.-...+...+.+|..+++|-. ..-+..+. ..+ ....+||+..|.-..+ .. ..+
T Consensus 71 ~l~~~i~~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~r~~~~~~~ 150 (195)
T 2pbr_A 71 LIEEKIIPDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRLKEKNRFENKE 150 (195)
T ss_dssp HHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTTTCCCCHH
T ss_pred HHHHHHHHHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHhhccCccchHH
Confidence 222334455678888888732 11222222 222 2346889887642211 11 122
Q ss_pred HHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 225 SLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 225 ~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
-.+++..........| ..+++|.|+ ++++.+++|.+++.+.
T Consensus 151 ~~~~~~~~~~~~~~~~--~~~~~Id~~~~~~~~~~~i~~~l~~~ 192 (195)
T 2pbr_A 151 FLEKVRKGFLELAKEE--ENVVVIDASGEEEEVFKEILRALSGV 192 (195)
T ss_dssp HHHHHHHHHHHHHHHS--TTEEEEETTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhC--CCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 2334433333222222 133788877 8999999999988743
No 66
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.40 E-value=2.8e-07 Score=79.02 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+.|+|+|++||||||+++.|.+.+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998864
No 67
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.40 E-value=1e-06 Score=74.99 Aligned_cols=147 Identities=16% Similarity=0.197 Sum_probs=72.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc--ceeeEEeecCccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN--QYLEYGTHEDAMY 170 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~--~fle~~~~~g~~Y 170 (330)
+..|+|+|++||||||+++.|.+.+...|. +. + .+ .| ..+...+..| .|... ....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i----~d---~--~~-~g--------~~i~~~~~~g~~~~~~~----~~~~ 62 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV----FE---P--EE-MG--------QALRKLTPGFSGDPQEH----PMWI 62 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE----CC---T--HH-HH--------HHHHHTSTTCCSCGGGS----TTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE----Ec---h--hh-hH--------HHHHHhCccccchhhhh----HHHH
Confidence 468999999999999999999887642221 00 0 00 00 0011111000 01000 0000
Q ss_pred cccHHHHHHHHHh-CCeEEEEeCH-------HHHHHHHhcCCCCEEEEEccCcccccc----Cc------hHHHHHHHHH
Q psy933 171 GTKLETIRRIHQE-GKIAILDVEP-------QALKILRTGEFSPFVVFIAAPQLQNLS----DY------DGSLEKLAKE 232 (330)
Q Consensus 171 Gts~~~i~~v~~~-gk~~vldv~~-------~~v~~L~~~~~~p~vIfI~pps~~~l~----~~------~e~~~rl~~~ 232 (330)
....+.+..+++. |..+|+|... .....++..+.....||+..|. +.+. .. .+.++++.++
T Consensus 63 ~~~~~~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~-e~~~~R~~~R~~r~~~~~~~~~~~~~ 141 (183)
T 2vli_A 63 PLMLDALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPL-NVVLERLRRDGQPQVNVGTVEDRLNE 141 (183)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCH-HHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCH-HHHHHHHHhccccchhHHHHHHHHHh
Confidence 0113445566666 7888888542 3344566555556678888763 2221 11 1222222222
Q ss_pred HHHHHhhccccceEEEecC--CHHHHHHHHHHHHHHhc
Q psy933 233 SDILKSAYEHFFDLTVVNN--DIEETIGILEKAIEELH 268 (330)
Q Consensus 233 ~~~ie~~~~~~fD~vI~N~--dle~a~~~L~~~i~~~~ 268 (330)
.+. + .+.+ +|.++ ++++++++|.+.+....
T Consensus 142 ~~~----~-~~~~-~Id~~~~~~~~~~~~I~~~l~~~~ 173 (183)
T 2vli_A 142 LRG----E-QFQT-HIDTAGLGTQQVAEQIAAQVGLTL 173 (183)
T ss_dssp HTS----G-GGCS-EEECTTCCHHHHHHHHHHHHTCCC
T ss_pred hcc----c-ccce-EeeCCCCCHHHHHHHHHHHHHHhc
Confidence 211 1 2234 77765 79999999998886543
No 68
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.40 E-value=1.5e-06 Score=74.98 Aligned_cols=25 Identities=16% Similarity=0.449 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.++.|+|+|++||||||+++.|.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999887
No 69
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.38 E-value=1.2e-06 Score=76.20 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++..|+|+||+||||||+++.|.+.+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999998753
No 70
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.36 E-value=6.7e-07 Score=75.49 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.|+|+|++||||||+++.|.+.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998864
No 71
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.33 E-value=8.7e-07 Score=74.53 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+|++||||||+++.|.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998864
No 72
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.31 E-value=2.4e-06 Score=72.89 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++.|+|+|++||||||+++.|.+.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998765
No 73
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.31 E-value=4.5e-06 Score=73.63 Aligned_cols=26 Identities=12% Similarity=0.276 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..|+|.||+||||||++++|++...
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998764
No 74
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.30 E-value=2e-06 Score=72.70 Aligned_cols=26 Identities=23% Similarity=0.583 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++.|+|+||+|||||||++.|.....
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988753
No 75
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.25 E-value=7.4e-07 Score=75.90 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.|+|+||+|||||||++.|.+.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 369999999999999999998765
No 76
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.25 E-value=6.7e-06 Score=70.21 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+..|+|+|++||||||+++.|.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 77
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.24 E-value=4.2e-06 Score=81.88 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=60.6
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY 170 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y 170 (330)
..++.|+|+||+||||||++++|++.. .|.+++.+.+. .|
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----------------------~~~~i~~D~~~-----------------~~ 295 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----------------------GYVHVNRDTLG-----------------SW 295 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG-----------------------TCEECCGGGSC-----------------SH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc-----------------------CcEEEccchHH-----------------HH
Confidence 356799999999999999999998754 25667666551 35
Q ss_pred cccHHHHHHHHHhCCeEEEEeC---H---HH-HHHHHhcCCCCEEEEEccC
Q psy933 171 GTKLETIRRIHQEGKIAILDVE---P---QA-LKILRTGEFSPFVVFIAAP 214 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~---~---~~-v~~L~~~~~~p~vIfI~pp 214 (330)
+.....+...+..|+.+|+|.. . .. ...++..+....+||+.+|
T Consensus 296 ~~~~~~~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~ 346 (416)
T 3zvl_A 296 QRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 346 (416)
T ss_dssp HHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 6667778888899999999955 2 22 2333445666678888765
No 78
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.18 E-value=1.9e-06 Score=75.91 Aligned_cols=156 Identities=13% Similarity=0.140 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
++..|+|+|++||||||+++.|.+.++. ..|..+.+++.+.+...+..+ ...........|.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~-----------------~~g~~~~~~~~d~~r~~l~~~-~~~~~~~r~~~~~ 85 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVR-----------------DRRVHAYRLDGDNIRFGLNKD-LGFSEADRNENIR 85 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHH-----------------HHCCCEEEECHHHHTTTTTTT-CCSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcc-----------------ccCCcEEEECChHHhhhhccc-cCCCHHHHHHHHH
Confidence 4578999999999999999999876530 012234444443333222111 0000000011111
Q ss_pred ccHHHHHHHHHhCCeEEEEeC---HHH---HHHHHh---cC---CC-CEEEEEccCccccccCc-h-HHHHHHHHHH---
Q psy933 172 TKLETIRRIHQEGKIAILDVE---PQA---LKILRT---GE---FS-PFVVFIAAPQLQNLSDY-D-GSLEKLAKES--- 233 (330)
Q Consensus 172 ts~~~i~~v~~~gk~~vldv~---~~~---v~~L~~---~~---~~-p~vIfI~pps~~~l~~~-~-e~~~rl~~~~--- 233 (330)
.-...+...++.|..+|+|.. ... ++.+.. .+ .. ..+||+..|. +.+.+. . .-+++..+..
T Consensus 86 ~~~~~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~-e~~~~R~~r~~~~~~r~~~~~~ 164 (211)
T 1m7g_A 86 RIAEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPV-EVAEQRDPKGLYKKAREGVIKE 164 (211)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCH-HHHHTSCTTCHHHHHHHTSSSS
T ss_pred HHHHHHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCH-HHHHHhhhHHHHHHHHhcchhh
Confidence 112223456678999888843 122 333332 11 13 4678998763 333211 0 0011110000
Q ss_pred -HHHHhhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 234 -DILKSAYE--HFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 234 -~~ie~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
+.+...|. ...|++|.++ ++++++++|.+.+..
T Consensus 165 ~~~~~~~y~~~~~~~~~IDt~~~s~eev~~~I~~~l~~ 202 (211)
T 1m7g_A 165 FTGISAPYEAPANPEVHVKNYELPVQDAVKQIIDYLDT 202 (211)
T ss_dssp CBTTTBCCCCCSSCSEEEECSSSCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccCCCCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 01111232 2357888776 699999999998875
No 79
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.18 E-value=2e-08 Score=88.05 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=22.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.|+|+||+||||||++++|.+.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999998764
No 80
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.17 E-value=4.9e-06 Score=71.72 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.|+|+|++||||||+++.|.+.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 81
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.16 E-value=6.2e-06 Score=75.46 Aligned_cols=25 Identities=16% Similarity=0.485 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++.|+|+||+|+|||||++.|.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998754
No 82
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.14 E-value=6e-06 Score=83.68 Aligned_cols=152 Identities=16% Similarity=0.153 Sum_probs=85.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccc-eeeEEeecCccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQ-YLEYGTHEDAMY 170 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~-fle~~~~~g~~Y 170 (330)
.+..|+|+|++||||||+++.|.+.+. ..|.++++++.+.+...+..+. |-. .+... .+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~------------------~~G~~~~~ld~D~ir~~l~~~~~f~~-~er~~-~l 430 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQ------------------ARGRKVTLLDGDVVRTHLSRGLGFSK-EDRIT-NI 430 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH------------------HTTCCEEEECHHHHHHHTCTTCCSSH-HHHHH-HH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhh------------------hcCCeEEEECchHhhhhhcccccccH-HHHHH-HH
Confidence 346899999999999999999987643 1356678888777665543221 110 00001 12
Q ss_pred cccHHHHHHHHHhCCeEEEEeC---HHHHHHHHhcC--CCCEEEEEccCccccccCchHHHHHHHH--HHHHHHh-----
Q psy933 171 GTKLETIRRIHQEGKIAILDVE---PQALKILRTGE--FSPFVVFIAAPQLQNLSDYDGSLEKLAK--ESDILKS----- 238 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~---~~~v~~L~~~~--~~p~vIfI~pps~~~l~~~~e~~~rl~~--~~~~ie~----- 238 (330)
..-...++.+++.|..+|++.. ......++..- ...++|||.+|- +.+.+... +.+.. ....++.
T Consensus 431 ~~i~~~~~~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~~d~~vV~L~~~~-e~~~~Rl~--r~~~~~~~~~~i~~~~~vr 507 (546)
T 2gks_A 431 LRVGFVASEIVKHNGVVICALVSPYRSARNQVRNMMEEGKFIEVFVDAPV-EVCEERDV--KGLYKKAKEGLIKGFTGVD 507 (546)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHTTSCTTCEEEEEEECCG-GGHHHHCC--SSHHHHC------CCBTTT
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHHHHhhcCCEEEEEEeCCH-HHHHHHhh--ccccccccHHHHHHHHhhh
Confidence 2222345567788999999953 22223333321 123789999763 33221000 01111 0111221
Q ss_pred -hcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 239 -AYE--HFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 239 -~~~--~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
.|. ...|++|.|+ +++++.++|.+.+..
T Consensus 508 ~~~e~~~~adivIDts~~s~eev~~~I~~~L~~ 540 (546)
T 2gks_A 508 DPYEPPVAPEVRVDTTKLTPEESALKILEFLKK 540 (546)
T ss_dssp BCCCCCSSCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred hccccccCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 222 3468999885 899999999998865
No 83
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.14 E-value=8.4e-06 Score=73.10 Aligned_cols=26 Identities=35% Similarity=0.621 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..+.|+|+||+||||+|++++|.+.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34688999999999999999999876
No 84
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.14 E-value=2.2e-05 Score=70.55 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..|+|.|++||||||+++.|++.+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHc
Confidence 589999999999999999999875
No 85
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.13 E-value=4.1e-06 Score=73.79 Aligned_cols=163 Identities=15% Similarity=0.232 Sum_probs=80.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC-CCcccCCee-------EEEecccchhhHHh----c----cc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP-RSDEENGRA-------YYFISHDEMMSDIA----A----NQ 158 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p-r~~E~~G~d-------y~fvs~~~f~~~i~----~----~~ 158 (330)
.|+|+||+||||||+++.|.+.+.- .........|.. ..+...|.. ..+++.+.+...+. . +.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~-~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~ 80 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI-PQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNG 80 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC-CEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-eEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 4899999999999999999987631 112222333431 111111211 11233333333322 1 12
Q ss_pred eeeEEeecCccccccHHHHHHHHHh----CCeEEEEeCHHH-HHHHHhcCC-----CCEEEEEccCccccc--------c
Q psy933 159 YLEYGTHEDAMYGTKLETIRRIHQE----GKIAILDVEPQA-LKILRTGEF-----SPFVVFIAAPQLQNL--------S 220 (330)
Q Consensus 159 fle~~~~~g~~YGts~~~i~~v~~~----gk~~vldv~~~~-v~~L~~~~~-----~p~vIfI~pps~~~l--------~ 220 (330)
++-. | |......+..+... ..+.+|+++++. ++++..... ..+-+|+.||+.+.. .
T Consensus 81 ~i~d----g--~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~~~l~ 154 (214)
T 1e4v_A 81 FLLD----G--FPRTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELT 154 (214)
T ss_dssp EEEE----S--CCCSHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTCCBCB
T ss_pred EEEe----C--CCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHCCcccCCcCCcccccCCCCCccccccccccccc
Confidence 2211 1 22233333433333 246778888865 566665432 236677788876542 1
Q ss_pred ----CchHHH-HHHHHHHH---HHHhhccc------cceEEEecC-CHHHHHHHHHHHH
Q psy933 221 ----DYDGSL-EKLAKESD---ILKSAYEH------FFDLTVVNN-DIEETIGILEKAI 264 (330)
Q Consensus 221 ----~~~e~~-~rl~~~~~---~ie~~~~~------~fD~vI~N~-dle~a~~~L~~~i 264 (330)
+..+.+ +|+....+ .+...|.. ....+|..+ +.++.+++|..+|
T Consensus 155 ~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~~~~~v~~~i~~~l 213 (214)
T 1e4v_A 155 TRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 213 (214)
T ss_dssp CCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCCCHHHHHHHHHHHh
Confidence 122333 34432211 12223432 123445444 8999999988765
No 86
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.13 E-value=2.5e-05 Score=69.95 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=86.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccce-----eeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQY-----LEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~f-----le~~~~~ 166 (330)
+++.|+|.|++||||||++++|.+.+.. . -.+||.|..+..-| +.+...+..+.+ .+.--|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~----~-~~~~~ep~~~t~~g--------~~ir~~l~~~~~~~~~~~~~llf~ 70 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP----N-CKLLKFPERSTRIG--------GLINEYLTDDSFQLSDQAIHLLFS 70 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS----S-EEEEESSCTTSHHH--------HHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc----c-ceEEEecCCCChHH--------HHHHHHHHhcccCCCHHHHHHHHH
Confidence 3579999999999999999999998764 1 24567663221111 112222222110 0000011
Q ss_pred CccccccHHHHHHHHHhCCeEEEEeCHHH--------------HHHHHh---cCCCC-EEEEE-ccCcccccc-------
Q psy933 167 DAMYGTKLETIRRIHQEGKIAILDVEPQA--------------LKILRT---GEFSP-FVVFI-AAPQLQNLS------- 220 (330)
Q Consensus 167 g~~YGts~~~i~~v~~~gk~~vldv~~~~--------------v~~L~~---~~~~p-~vIfI-~pps~~~l~------- 220 (330)
.+.+- ..+.|...+++|+++|.|=-..+ +..+.. ..+.| .+||+ ..|.-.-++
T Consensus 71 a~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~~~~~d 149 (216)
T 3tmk_A 71 ANRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDE 149 (216)
T ss_dssp HHHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCCSSSCC
T ss_pred HHHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHhccCcc
Confidence 12222 24567778899999998865433 112221 12344 67888 754221111
Q ss_pred --CchHHHHHHHHHHHHHHhh---ccccceEEEe-c-CCHHHHHHHHHHHHHHh
Q psy933 221 --DYDGSLEKLAKESDILKSA---YEHFFDLTVV-N-NDIEETIGILEKAIEEL 267 (330)
Q Consensus 221 --~~~e~~~rl~~~~~~ie~~---~~~~fD~vI~-N-~dle~a~~~L~~~i~~~ 267 (330)
|..+=.+++.+....+-.. +...--.+|. + .++++..+++.++|...
T Consensus 150 r~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~ 203 (216)
T 3tmk_A 150 RYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPV 203 (216)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1222234454444444322 1122234555 3 49999999999988764
No 87
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.12 E-value=6.1e-06 Score=70.92 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~ 115 (330)
+..++|+||+|||||||++.|..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 45799999999999999999976
No 88
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.11 E-value=1.7e-05 Score=68.01 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++..|+|+|++||||||+++.|....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998765
No 89
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.10 E-value=4.6e-06 Score=72.70 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~ 115 (330)
..|+|+||+||||||+++.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 90
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.09 E-value=4.3e-06 Score=76.29 Aligned_cols=147 Identities=14% Similarity=0.152 Sum_probs=74.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecC-ccccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED-AMYGT 172 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g-~~YGt 172 (330)
..|+|+|++||||||+++.|.+.+.. . |..+.+++.+.+...+.. | ..... ..++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~-~-----------------g~~~i~~~~D~~~~~l~~--~---~~~~e~~~~~~ 61 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSK-N-----------------NIDVIVLGSDLIRESFPV--W---KEKYEEFIKKS 61 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH-T-----------------TCCEEEECTHHHHTTSSS--C---CGGGHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHh-C-----------------CCEEEEECchHHHHHHhh--h---hHHHHHHHHHH
Confidence 57999999999999999999876321 0 111222344444322211 1 11101 12233
Q ss_pred cHHHHHHHHHhCCeEEEEeC---HHHHHHHHh----cCCCCEEEEEccCccccccC---------chHHHHHHHHHHHHH
Q psy933 173 KLETIRRIHQEGKIAILDVE---PQALKILRT----GEFSPFVVFIAAPQLQNLSD---------YDGSLEKLAKESDIL 236 (330)
Q Consensus 173 s~~~i~~v~~~gk~~vldv~---~~~v~~L~~----~~~~p~vIfI~pps~~~l~~---------~~e~~~rl~~~~~~i 236 (330)
....+...++. ..+|+|-. ......+.. .+....+||+.+| .+.+.+ ..+.++++.+..+..
T Consensus 62 ~~~~i~~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~-~e~~~~R~~~R~~~~~~~~l~~~~~~~e~~ 139 (260)
T 3a4m_A 62 TYRLIDSALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKAS-LDVLIRRNIERGEKIPNEVIKKMYEKFDEP 139 (260)
T ss_dssp HHHHHHHHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECC-HHHHHHHHHHTTCSSCHHHHHHHHHHCCCT
T ss_pred HHHHHHHHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCC-HHHHHHHHHhCCCCCCHHHHHHHHHHhcCc
Confidence 34556666666 77787743 222333332 2333568888876 333210 122233332221111
Q ss_pred Hhhcc-ccceEEEecC---CHHHHHHHHHHHHH
Q psy933 237 KSAYE-HFFDLTVVNN---DIEETIGILEKAIE 265 (330)
Q Consensus 237 e~~~~-~~fD~vI~N~---dle~a~~~L~~~i~ 265 (330)
...|. ...+++|.++ ++++.++.|.+.+.
T Consensus 140 ~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 140 GKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp TSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred cccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 11121 2357888765 57777777776654
No 91
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.09 E-value=2.5e-06 Score=75.81 Aligned_cols=26 Identities=23% Similarity=0.494 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..|+|+||+||||||++++|.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998764
No 92
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.08 E-value=3.9e-06 Score=75.64 Aligned_cols=169 Identities=11% Similarity=0.021 Sum_probs=85.6
Q ss_pred ccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc-ceeeEEe--
Q psy933 88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN-QYLEYGT-- 164 (330)
Q Consensus 88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~-~fle~~~-- 164 (330)
+...++..|+|.|++||||||+++.|.+.+...-+..+-.|||.|..+.. | +.+.+.+... .+-.+.+
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~-g--------~~ir~~l~~~~~~~~~~e~l 86 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLL-N--------ESVRNLLFKAQGLDSLSELL 86 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHH-H--------HHHHHHHHTCSSCCHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChH-H--------HHHHHHHhCCCCCCHHHHHH
Confidence 34456679999999999999999999987642123355566898864322 1 1222222211 1000000
Q ss_pred -ecCccccccHHHHHHHHHhCCeEEEEeCHH---------------HHHHHHhcC--CC-CEEEEEccCccccccC----
Q psy933 165 -HEDAMYGTKLETIRRIHQEGKIAILDVEPQ---------------ALKILRTGE--FS-PFVVFIAAPQLQNLSD---- 221 (330)
Q Consensus 165 -~~g~~YGts~~~i~~v~~~gk~~vldv~~~---------------~v~~L~~~~--~~-p~vIfI~pps~~~l~~---- 221 (330)
|..+.+..-...|+..+++|+++|.|=-.. -+..|.... +. -.+||+..|.-..++.
T Consensus 87 lf~a~R~~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~~~PDl~I~Ldv~~e~~~~Ri~rd 166 (223)
T 3ld9_A 87 FFIAMRREHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVIDVYPDITFIIDVDINESLSRSCKN 166 (223)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCSSCCSEEEEEECC-----------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHhccC
Confidence 111112222233555677888888875432 233332211 23 3478887653222211
Q ss_pred ---c--hHHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 222 ---Y--DGSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 222 ---~--~e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
. .+-++++.+....+...|. .-..+|.++ ++++. ++|.++|.+.
T Consensus 167 r~E~~~~e~~~rv~~~y~~la~~~~-~~~~vIDa~~sieeV-~~I~~~l~~~ 216 (223)
T 3ld9_A 167 GYEFADMEFYYRVRDGFYDIAKKNP-HRCHVITDKSETYDI-DDINFVHLEV 216 (223)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCT-TTEEEEESSCSSSCC-CHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHCC-CCEEEEcCCCCHHHH-HHHHHHHHHH
Confidence 0 1112444444444433343 235667666 78888 8888777654
No 93
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.06 E-value=7.6e-07 Score=77.20 Aligned_cols=87 Identities=9% Similarity=0.101 Sum_probs=51.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC--Cee-EEEecccchhhHHhccceeeEEeecCcc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN--GRA-YYFISHDEMMSDIAANQYLEYGTHEDAM 169 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~--G~d-y~fvs~~~f~~~i~~~~fle~~~~~g~~ 169 (330)
.+.++|+||||+|||||+++|+..++. .+..+..+++.++..+++ |.| |+|++ ..+.+..- ....+++.+.+ .
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~~~id~~g~Ds~~~~~-~G~~~v~i-~~~~~~~~~~~-~ 81 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHDMDVDKPGKDSYELRK-AGAAQTIV-ASQQRWALMTE-T 81 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC------------CHHH-HTCSEEEE-ECSSEEEEEEE-C
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCccccCCCCCceEEEEe-CCcceeec-ccchhheeeee-c
Confidence 468999999999999999999987642 345566778888777665 555 55544 11211110 11234443333 5
Q ss_pred ccccHHHHHHHHHh
Q psy933 170 YGTKLETIRRIHQE 183 (330)
Q Consensus 170 YGts~~~i~~v~~~ 183 (330)
||++...++++++.
T Consensus 82 ~~~~~~~L~~ll~r 95 (174)
T 1np6_A 82 PDEEELDLQFLASR 95 (174)
T ss_dssp SSSCCCCHHHHHHH
T ss_pred cCCchhhHHHHHHh
Confidence 88888888888865
No 94
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.06 E-value=7.4e-06 Score=69.91 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+..|+|+||+||||||+++.|.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 95
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.06 E-value=1.6e-06 Score=73.18 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..|+|+|++||||||+++.|.+.+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998864
No 96
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.05 E-value=3.2e-06 Score=78.36 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=23.1
Q ss_pred ccceEEEecC-CHHHHHHHHHHHHHHhc
Q psy933 242 HFFDLTVVNN-DIEETIGILEKAIEELH 268 (330)
Q Consensus 242 ~~fD~vI~N~-dle~a~~~L~~~i~~~~ 268 (330)
..+|++|.|+ ++++++++|..++..+.
T Consensus 243 ~~AD~vIdn~~s~eel~~~I~~~l~~l~ 270 (281)
T 2f6r_A 243 EQSNVVLSTLWESHVTQSQVEKAWNLLQ 270 (281)
T ss_dssp HTCSEEEECSSCHHHHHHHHHHHHHHHH
T ss_pred hhCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 4579999998 89999999999987653
No 97
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.03 E-value=3.1e-05 Score=69.05 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=31.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD 135 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~ 135 (330)
++.|+|.|++||||||++++|.+.+.. -+...-++||.|+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t 44 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGT 44 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCC
Confidence 578999999999999999999887653 222122788988643
No 98
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.03 E-value=4.9e-06 Score=73.07 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=37.3
Q ss_pred CCEEEEEccCccccccCchHHHHHHHHHHHHH-HhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 205 SPFVVFIAAPQLQNLSDYDGSLEKLAKESDIL-KSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 205 ~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~i-e~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
...+|||..|. +..++|+....... ......+.|++|.|+ +++++.+++..+++++
T Consensus 130 ~d~vi~v~a~~-------e~r~~Rli~~q~~~~~~~~~~~AD~vI~n~~~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 130 CDHVITVVASR-------ETILKRNREADRRLKFQEDIVPQGIVVANNSTLEDLEKKVEEVMKLV 187 (192)
T ss_dssp CSEEEEEECCH-------HHHHHHCSSHHHHHTTCTTCCCCSEEEECSSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCH-------HHHHHHHHHhcCCchhhhHHhcCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 45788888773 23345542211111 023457799999998 8999999999998876
No 99
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.02 E-value=5.5e-06 Score=71.52 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
+..|+|+|++||||||+++.|.+.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 458999999999999999999875
No 100
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.01 E-value=3.8e-05 Score=67.37 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..|+|+|++||||||+++.|.+.+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998865
No 101
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.98 E-value=4.8e-06 Score=75.61 Aligned_cols=100 Identities=14% Similarity=0.216 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhc--------cceeeEE
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAA--------NQYLEYG 163 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~--------~~fle~~ 163 (330)
++..|+|+||+||||||+++.|.+.++. .+++++.+.+...+.. |.-+ .
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~---------------------~~~~~~~D~~r~~~~~~~~i~~~~g~~~--~ 87 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQG---------------------NIVIIDGDSFRSQHPHYLELQQEYGKDS--V 87 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTT---------------------CCEEECGGGGGTTSTTHHHHHTTCSSTT--H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCC---------------------CcEEEecHHHHHhchhHHHHHHHcCchH--H
Confidence 3468999999999999999999987642 1344555554332111 1000 0
Q ss_pred eecCcccccc-HHHHHHHHHhCCeEEEEeCHHH-------HHHHHhcCCCCEEEEEccC
Q psy933 164 THEDAMYGTK-LETIRRIHQEGKIAILDVEPQA-------LKILRTGEFSPFVVFIAAP 214 (330)
Q Consensus 164 ~~~g~~YGts-~~~i~~v~~~gk~~vldv~~~~-------v~~L~~~~~~p~vIfI~pp 214 (330)
++..+..|.- ...++.+++.|..+|+|..+.+ .+.++..+....+||+..|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~ 146 (253)
T 2p5t_B 88 EYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATK 146 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCC
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence 0000011211 2334456677888999876532 3445566666667787765
No 102
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.97 E-value=4.1e-07 Score=79.75 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCCC-Cccccc---cccccC----CCCcccCCeeEEE--ecccchhhH----Hhc
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFPD-KYAYPV---PHTTRS----PRSDEENGRAYYF--ISHDEMMSD----IAA 156 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p~-~f~~~v---~~TTR~----pr~~E~~G~dy~f--vs~~~f~~~----i~~ 156 (330)
..+..|+|+||+|||||||++.|...++. .....+ ....++ ...+...|..|++ ++.+.+.+. +..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~ 99 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKA 99 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhc
Confidence 34568999999999999999999876421 111111 111111 1122222222222 334444333 234
Q ss_pred cceeeEEeecCccccccHHHHHHHHHhCCeEEEEeCHHHHHHHHhcCCCCEEEEEccCcccccc---CchHH-HHHHHHH
Q psy933 157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLS---DYDGS-LEKLAKE 232 (330)
Q Consensus 157 ~~fle~~~~~g~~YGts~~~i~~v~~~gk~~vldv~~~~v~~L~~~~~~p~vIfI~pps~~~l~---~~~e~-~~rl~~~ 232 (330)
+..+.+..|... +++.... ......+.++|++...-.-..+. .....+|||.+|.-..+. ..+++ .+++...
T Consensus 100 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~vIveg~~l~~~~~~--~~~d~~i~v~~~~~~~~~R~~~R~~~~~~~~~~~ 175 (201)
T 1rz3_A 100 SHQLTLPFYDHE-TDTHSKR-TVYLSDSDMIMIEGVFLQRKEWR--PFFDFVVYLDCPREIRFARENDQVKQNIQKFINR 175 (201)
T ss_dssp CSEEEEEEEETT-TTEEEEE-EEECTTCSEEEEEETTTTSTTTG--GGCSEEEEECCC--------------CHHHHHHH
T ss_pred CCccccCceecc-CCCCCCc-eEEeCCCcEEEEechhhccHHHH--hhcCEEEEEeCCHHHHHHHHhcCCHHHHHHHHhh
Confidence 445555444332 2221110 01123577888887642211111 234689999988533332 22222 2333221
Q ss_pred HHH-----HH-hhccccceEEEecC
Q psy933 233 SDI-----LK-SAYEHFFDLTVVNN 251 (330)
Q Consensus 233 ~~~-----ie-~~~~~~fD~vI~N~ 251 (330)
... ++ ......+|+||.|+
T Consensus 176 ~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 176 YWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred eeHHHHHHhCCCCcHhhCcEEecCC
Confidence 111 11 11246789999986
No 103
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.95 E-value=5.3e-05 Score=68.77 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..|+|+||+|||||||++.|.+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999998765
No 104
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.92 E-value=4.2e-08 Score=91.72 Aligned_cols=125 Identities=10% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC-----------CCccc-cccccccCCCCcccCC-eeEEEecccchh--------
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP-----------DKYAY-PVPHTTRSPRSDEENG-RAYYFISHDEMM-------- 151 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p-----------~~f~~-~v~~TTR~pr~~E~~G-~dy~fvs~~~f~-------- 151 (330)
+..|+|.||+||||||+++.|.+.+. |.|.. .+..+++.+++++.+| .+|.+.+.+.|+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~l 84 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVF 84 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHHH
Confidence 46899999999999999999988543 11222 2334444444555555 455554444432
Q ss_pred hHHhccceeeEEeec-----CccccccHHHHH---HHHHhCCeEEEEeCHHHH----HHHHhcCCCCEEEEEccCccccc
Q psy933 152 SDIAANQYLEYGTHE-----DAMYGTKLETIR---RIHQEGKIAILDVEPQAL----KILRTGEFSPFVVFIAAPQLQNL 219 (330)
Q Consensus 152 ~~i~~~~fle~~~~~-----g~~YGts~~~i~---~v~~~gk~~vldv~~~~v----~~L~~~~~~p~vIfI~pps~~~l 219 (330)
..+..+..+++..|. +..|+.....+. .+......+|++.-.-+. ..++ ......|||.+|...++
T Consensus 85 ~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~--~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 85 REYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIA--GLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCG--GGCSEEEEEEECHHHHH
T ss_pred HHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHH--HhCCEEEEEECCHHHHH
Confidence 133445566665551 244554433221 111234556655322110 0111 12358999999865444
No 105
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.92 E-value=1.6e-05 Score=70.69 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+||+||||||++++|.+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998875
No 106
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.90 E-value=0.00013 Score=63.02 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=22.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.|+|+|++||||||+++.|.+.+.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4899999999999999999988653
No 107
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.89 E-value=4.9e-05 Score=67.96 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..|+|+|++||||||+++.|.+.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998754
No 108
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.87 E-value=8.6e-05 Score=65.67 Aligned_cols=162 Identities=14% Similarity=0.246 Sum_probs=81.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
|++.|+|-|+-||||||+++.|.+.+...+ -.++||.|..... -+.+.+.+..+.-+... ..--+|.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~---~v~~~~eP~~t~~---------g~~ir~~l~~~~~~~~~-~~~lLf~ 67 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYHRLVKDY---DVIMTREPGGVPT---------GEEIRKIVLEGNDMDIR-TEAMLFA 67 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHHHHTTTS---CEEEEESSTTCHH---------HHHHHHHHHSSCCCCHH-HHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCC---CEEEeeCCCCChH---------HHHHHHHHhcccCCCHH-HHHHHHH
Confidence 456899999999999999999988764322 2356787753221 01222222222100000 0000111
Q ss_pred cc-----HHHHHHHHHhCCeEEEEeCH---------------HHHHHHHh---cCCCC-EEEEEccCcc---ccccCc--
Q psy933 172 TK-----LETIRRIHQEGKIAILDVEP---------------QALKILRT---GEFSP-FVVFIAAPQL---QNLSDY-- 222 (330)
Q Consensus 172 ts-----~~~i~~v~~~gk~~vldv~~---------------~~v~~L~~---~~~~p-~vIfI~pps~---~~l~~~-- 222 (330)
.. ...|...+++|+++|.|=-. +-+..|.. ..+.| .+||+..|.- +++...
T Consensus 68 a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~ 147 (205)
T 4hlc_A 68 ASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSR 147 (205)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence 11 23355567788888877432 22333332 23444 5788886632 222110
Q ss_pred -----h-H--H-HHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHHh
Q psy933 223 -----D-G--S-LEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEEL 267 (330)
Q Consensus 223 -----~-e--~-~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~~ 267 (330)
+ + + .+++.+...++-..++..+ .+|..+ ++++..+++.++|.+.
T Consensus 148 ~~dr~e~~~~~f~~~v~~~Y~~l~~~~~~~~-~~IDa~~~~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 148 DQNRLDQEDLKFHEKVIEGYQEIIHNESQRF-KSVNADQPLENVVEDTYQTIIKY 201 (205)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHSCCTTE-EEEETTSCHHHHHHHHHHHHHHH
T ss_pred cccchhccCHHHHHHHHHHHHHHHHhCCCCE-EEEECCCCHHHHHHHHHHHHHHH
Confidence 1 1 1 1333333333333333322 234434 8999999988887654
No 109
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.86 E-value=9.9e-05 Score=65.81 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=33.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCcccccc--ccccCCCCc--ccCCeeEEEeccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP--HTTRSPRSD--EENGRAYYFISHD 148 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~--~TTR~pr~~--E~~G~dy~fvs~~ 148 (330)
..|+|+|++|||||||.++|+.... +....+ .+|+.+... +.+|..+.+++..
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTp 86 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV--FHSGTAAKSITKKCEKRSSSWKETELVVVDTP 86 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC--SCC-------CCSCEEEEEEETTEEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc--CccCCCCCceeeeEEEEEEEeCCceEEEEECC
Confidence 5799999999999999999997643 222222 455544322 3456666665543
No 110
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.85 E-value=2.4e-05 Score=80.49 Aligned_cols=153 Identities=18% Similarity=0.299 Sum_probs=78.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhcc-ceeeEEeecCccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAAN-QYLEYGTHEDAMY 170 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~-~fle~~~~~g~~Y 170 (330)
++..|+|+|++||||||+++.|.+.... .|..++.++.+.+...+..+ .|-. +.....+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~------------------~G~~~v~lDgD~iR~~L~~~~~fs~--~dree~~ 110 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC------------------HGIPCYTLDGDNIRQGLNKNLGFSP--EDREENV 110 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH------------------TTCCEEEESHHHHTTTTTTTCCSSH--HHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh------------------cCCeEEEechHHhhhccCccccCCh--hhhHHHH
Confidence 5678999999999999999999886521 12223333333322211111 0100 0000001
Q ss_pred cccHHHHHHHHHhCCeEEEEe-CH-----HHHHHHHh-cCCCCEEEEEccCccccccCchHHHHHHHHHH--------HH
Q psy933 171 GTKLETIRRIHQEGKIAILDV-EP-----QALKILRT-GEFSPFVVFIAAPQLQNLSDYDGSLEKLAKES--------DI 235 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv-~~-----~~v~~L~~-~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--------~~ 235 (330)
-.-.+.++..++.|.+++.+. .+ +.++.+.. .+...++|||..|. +.+.+... +++++.. ..
T Consensus 111 r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~-Evl~~Rl~--r~ly~~aR~~~~~~~~~ 187 (630)
T 1x6v_B 111 RRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPL-HVCEQRDV--KGLYKKARAGEIKGFTG 187 (630)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCH-HHHHHHCT--TSHHHHHTTC----CBT
T ss_pred HHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCH-HHHHHHhc--cccchhhhhhhHHHHHH
Confidence 000122234457888888773 22 23333333 33345689999863 22211000 0111110 11
Q ss_pred HHhhcc--ccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933 236 LKSAYE--HFFDLTVVNN--DIEETIGILEKAIEEL 267 (330)
Q Consensus 236 ie~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~~ 267 (330)
+...|. ...|.+|.++ ++++++++|.+.|...
T Consensus 188 ~~~~Ye~p~~~dlvIDts~~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 188 IDSEYEKPEAPELVLKTDSCDVNDCVQQVVELLQER 223 (630)
T ss_dssp TTBCCCCCSSCSEEEETTSSCHHHHHHHHHHHHHHT
T ss_pred hhhhhcccCCCcEEEECCCCCHHHHHHHHHHHHHhc
Confidence 222343 3567888875 8999999999998764
No 111
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.85 E-value=3.6e-05 Score=67.11 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..|+|+||+|||||||++.|...++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999988653
No 112
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.83 E-value=7.2e-05 Score=73.37 Aligned_cols=57 Identities=32% Similarity=0.588 Sum_probs=40.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMM 151 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~ 151 (330)
..|+|+|++|||||||.++|+.... .+....+.|||.+..++ .+|.++.+++...+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~ 239 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 239 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCCCc
Confidence 4799999999999999999987643 24677889999988774 488888888776553
No 113
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.83 E-value=0.00014 Score=64.19 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..|+|+|++||||||+++.|.+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998875
No 114
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.82 E-value=7.7e-06 Score=70.11 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..|+|+||+|||||||++.|...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999999875
No 115
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.78 E-value=3.2e-05 Score=67.07 Aligned_cols=32 Identities=34% Similarity=0.453 Sum_probs=24.9
Q ss_pred ccccceEEEecC-CHHHHHHHHHHHHHHhcCCC
Q psy933 240 YEHFFDLTVVNN-DIEETIGILEKAIEELHTTP 271 (330)
Q Consensus 240 ~~~~fD~vI~N~-dle~a~~~L~~~i~~~~~~~ 271 (330)
|....|++|.|+ +++++++++.+++..+...|
T Consensus 164 ~~~~ad~vId~~~~~~~~~~~i~~~l~~~~~~~ 196 (204)
T 2if2_A 164 KVKYADYVIDNSGSIEETYKQVKKVYEELTRDP 196 (204)
T ss_dssp HGGGCSEECCCSSCHHHHHHHHHHHHHTTCC--
T ss_pred HHhcCCEEEECCCCHHHHHHHHHHHHHHHhcCh
Confidence 345578999888 89999999999998776554
No 116
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.76 E-value=2.4e-05 Score=72.18 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++.|+|+||+||||||++++|.+.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999998854
No 117
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.76 E-value=1.2e-05 Score=68.52 Aligned_cols=26 Identities=23% Similarity=0.357 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++..|+|+|++||||||+++.|....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
No 118
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.72 E-value=4.2e-05 Score=69.11 Aligned_cols=31 Identities=6% Similarity=0.079 Sum_probs=23.4
Q ss_pred ccCCCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++...+..|+|+|++||||||+++.|.+.+.
T Consensus 17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp ----CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccCCCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3333445799999999999999999988654
No 119
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.69 E-value=0.00014 Score=64.08 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..|+|+||+||||||++++|.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998753
No 120
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.68 E-value=6.8e-05 Score=66.45 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+||+||||+|++++|.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999876
No 121
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.66 E-value=0.00033 Score=63.22 Aligned_cols=55 Identities=15% Similarity=0.303 Sum_probs=35.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccc--cccccCCCCc--ccCCeeEEEecccch
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV--PHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v--~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
..|+|+|.+|||||||.++|+.... |.... .-||+.+..+ +.+|..+.++|..-+
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~~--~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~ 80 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQRR--FFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDI 80 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSCC--C---------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCC--ccccCCCCCccccEEEEEEEECCcEEEEEECCCC
Confidence 3689999999999999999987643 22221 1266665433 456777777766543
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.65 E-value=0.00034 Score=60.83 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=31.3
Q ss_pred ccCCCCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933 88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP 132 (330)
Q Consensus 88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p 132 (330)
++......|+|+|++|||||||.++|.......+....+.||+..
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~ 68 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHI 68 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCE
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccce
Confidence 344445689999999999999999998764212344455566654
No 123
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.54 E-value=0.00093 Score=56.57 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=24.2
Q ss_pred ccCCCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 88 LPSFKRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 88 ~~~~~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
++......|+|+|++|||||||.++|...
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44445568999999999999999999865
No 124
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.50 E-value=0.00053 Score=61.00 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=22.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..|+|+|++||||||+++.|.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998753
No 125
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.42 E-value=0.00048 Score=62.28 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+..|+|.||+|||||||++.|.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 126
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.39 E-value=0.0012 Score=58.03 Aligned_cols=60 Identities=25% Similarity=0.296 Sum_probs=32.5
Q ss_pred eecccC--CCCCEEEEEcCCCccHHHHHHHHHhhCCCCcc-ccccccccCCCCcc--cCCeeEEEecc
Q psy933 85 VVKLPS--FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYA-YPVPHTTRSPRSDE--ENGRAYYFISH 147 (330)
Q Consensus 85 V~~~~~--~~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~-~~v~~TTR~pr~~E--~~G~dy~fvs~ 147 (330)
+.++|. .....|+|+|++|||||||+++|.... |. ...+.||+....+. .++..+.+++.
T Consensus 19 ~~~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~---~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt 83 (228)
T 2qu8_A 19 FQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRAN---VDVQSYSFTTKNLYVGHFDHKLNKYQIIDT 83 (228)
T ss_dssp ---CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTC---EEEECC-----CEEEEEEEETTEEEEEEEC
T ss_pred eccCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCC---CccCCCCCcceeeeeeeeecCCCeEEEEEC
Confidence 344554 334579999999999999999998652 32 33556666443221 23444445443
No 127
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.39 E-value=0.0028 Score=53.27 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.2
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.....|+|+|++|||||||.++|....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 344679999999999999999998765
No 128
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.32 E-value=0.00044 Score=70.42 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=77.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCC-eeEEEecccchhhHHhcc-ceeeEEeecCcc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENG-RAYYFISHDEMMSDIAAN-QYLEYGTHEDAM 169 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G-~dy~fvs~~~f~~~i~~~-~fle~~~~~g~~ 169 (330)
++..|+|+|++||||||+++.|.+.+.. .| ..+++++.+.+...+..+ .|-.. +...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~------------------~G~~~~~~lD~D~ir~~l~~~~~f~~~-er~~~- 454 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQ------------------QGGRSVSLLLGDTVRHELSSELGFTRE-DRHTN- 454 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH------------------HCSSCEEEEEHHHHHHHTCTTCCCSHH-HHHHH-
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcc------------------cCCceEEEECcHHHHHHhccccCCChh-HHHHH-
Confidence 4457999999999999999999876431 02 345556555554432111 01000 00000
Q ss_pred ccccHHHHHHHHHhCCeEEEEeCH------HHHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHH--HHHH----
Q psy933 170 YGTKLETIRRIHQEGKIAILDVEP------QALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKES--DILK---- 237 (330)
Q Consensus 170 YGts~~~i~~v~~~gk~~vldv~~------~~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~--~~ie---- 237 (330)
+..-...++.+++.|.++|.+.-. +.++.+-......++||+..|- +.+.+.. .+.+.+.. ..++
T Consensus 455 i~ri~~v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g~~~~V~Lda~~-ev~~~R~--~r~l~~~~~~~~i~~~~~ 531 (573)
T 1m8p_A 455 IQRIAFVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPL-EHCEQSD--KRGIYAAARRGEIKGFTG 531 (573)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTSEEEEEEECCCH-HHHHHHC--SSCHHHHHHTTSSSSCBT
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHHhcCCeEEEEEeCCH-HHHHHHh--cccchhhhhHHHHHHHHh
Confidence 000012344556778888887532 1222222211123789998763 2221100 00122111 0111
Q ss_pred --hhcc--ccceEEEecC--CHHHHHHHHHHHHHH
Q psy933 238 --SAYE--HFFDLTVVNN--DIEETIGILEKAIEE 266 (330)
Q Consensus 238 --~~~~--~~fD~vI~N~--dle~a~~~L~~~i~~ 266 (330)
..|. ...|.+|.++ ++++++++|...+..
T Consensus 532 ~r~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 532 VDDPYETPEKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp TTBCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 1122 2457888765 799999999998875
No 129
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.28 E-value=0.0007 Score=68.63 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..|+|+|++|||||||++.|....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhh
Confidence 45789999999999999999998765
No 130
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.25 E-value=0.0007 Score=63.19 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=36.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cC-CeeEEEeccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--EN-GRAYYFISHD 148 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~-G~dy~fvs~~ 148 (330)
-.|+|+|++|||||||.++|+.... ......+.|||..-.+- .+ +..+.|++..
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTP 67 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTP 67 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECc
Confidence 3799999999999999999986532 12345667887654432 23 5555666543
No 131
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.24 E-value=6.5e-05 Score=83.38 Aligned_cols=79 Identities=16% Similarity=0.278 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
.+..|+|+||||||||||++.|.+.++ |..|+ +||+|..-++.+.+.+. +.+..+|..|+..
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------------p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1170 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD-------------TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIA 1170 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC-------------CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHH
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc-------------CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHH
Confidence 467899999999999999998887653 44554 48988777777776653 4588999999999
Q ss_pred Cc-cccc-----cHHHHHHHHHh
Q psy933 167 DA-MYGT-----KLETIRRIHQE 183 (330)
Q Consensus 167 g~-~YGt-----s~~~i~~v~~~ 183 (330)
.| .||. +.+.|.++++.
T Consensus 1171 eNI~~gld~~~~sd~ei~~Al~~ 1193 (1321)
T 4f4c_A 1171 ENIIYGLDPSSVTMAQVEEAARL 1193 (1321)
T ss_dssp HHHSSSSCTTTSCHHHHHHHHHH
T ss_pred HHHhccCCCCCCCHHHHHHHHHH
Confidence 88 5883 44556555543
No 132
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.24 E-value=8.9e-05 Score=69.76 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=24.0
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||+|+|||||++.|...++
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3568999999999999999998876654
No 133
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.22 E-value=0.0015 Score=57.20 Aligned_cols=158 Identities=13% Similarity=0.169 Sum_probs=83.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc---
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG--- 171 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG--- 171 (330)
.|+|-|+-||||||.++.|.+.+... +. --.+||.|..... -+.+...+..+.+-...+. -+|.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~-g~-~v~~treP~~t~~---------~~~ir~~l~~~~~~~~~~~--ll~~a~r 68 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR-GK-KVILKREPGGTET---------GEKIRKILLEEEVTPKAEL--FLFLASR 68 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-TC-CEEEEESSCSSHH---------HHHHHHHHHHSCCCHHHHH--HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CC-cEEEEECCCCCcH---------HHHHHHHhhcccCChHHHH--HHHHHHH
Confidence 58899999999999999988765421 11 2256787753221 1222222222221100000 0111
Q ss_pred -ccHHHHHHHHHhCCeEEEEeCHHH---------------HHHHHh---cCCC-CEEEEEccCcccccc--------Cch
Q psy933 172 -TKLETIRRIHQEGKIAILDVEPQA---------------LKILRT---GEFS-PFVVFIAAPQLQNLS--------DYD 223 (330)
Q Consensus 172 -ts~~~i~~v~~~gk~~vldv~~~~---------------v~~L~~---~~~~-p~vIfI~pps~~~l~--------~~~ 223 (330)
.....|...+++|+++|.|=-..+ +..|.. ..+. ..+||+..|.-..++ +..
T Consensus 69 ~~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~~~~dr~e~~ 148 (197)
T 3hjn_A 69 NLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRKGELNRFEKR 148 (197)
T ss_dssp HHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC---CTTCCH
T ss_pred HHHHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhCcCcCccccH
Confidence 123456777788999888853322 222222 2343 457777765322221 122
Q ss_pred HHHHHHHHHHHHHHhhccccceEEEecC-CHHHHHHHHHHHHHH
Q psy933 224 GSLEKLAKESDILKSAYEHFFDLTVVNN-DIEETIGILEKAIEE 266 (330)
Q Consensus 224 e~~~rl~~~~~~ie~~~~~~fD~vI~N~-dle~a~~~L~~~i~~ 266 (330)
+-.+++.+...++...++..+ .+|.++ ++++..++|.++|++
T Consensus 149 ef~~rv~~~y~~la~~~~~~~-~~IDa~~~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 149 EFLERVREGYLVLAREHPERI-VVLDGKRSIEEIHRDVVREVKR 191 (197)
T ss_dssp HHHHHHHHHHHHHHHHCTTTE-EEEETTSCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhCCCCE-EEEcCCCCHHHHHHHHHHHHHH
Confidence 333555555555544444432 345444 899999998888753
No 134
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.18 E-value=0.00034 Score=58.93 Aligned_cols=52 Identities=19% Similarity=0.278 Sum_probs=33.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEec
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFIS 146 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs 146 (330)
..|+|+|++|||||||.++|..... .+....+.||+..-.+ +.+|..+.+++
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~D 58 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIID 58 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-ceeeCCCCceeceeeEEEEECCeEEEEEE
Confidence 4689999999999999999986532 1334455666644322 23444444443
No 135
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.17 E-value=0.001 Score=55.20 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=32.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH 147 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~ 147 (330)
...|+|+|++|||||||.++|...... ....+.+|...... +.+|..+.+++.
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt 62 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVT--EQEAGGITQHIGAYQVTVNDKKITFLDT 62 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSS--CSSCCSSSTTCCCCEEEETTEEEEESCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccc--cCCCCceeEeeeEEEEEeCCceEEEEEC
Confidence 457999999999999999999865321 11223333333222 345555665554
No 136
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.15 E-value=0.00017 Score=62.07 Aligned_cols=50 Identities=10% Similarity=0.114 Sum_probs=29.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC---CeeEEE
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN---GRAYYF 144 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~---G~dy~f 144 (330)
+.++|+|++|||||||+.+|+..+.. .+..+...+..+...++| |.|.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~-~g~~v~~ik~~~~~~diD~~~g~D~~r 57 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR-EGWRVGTVKHHGHGGEPARPEGVDSVR 57 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC---------------
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh-cCCeeeEEEeCCCCcccccCCChhHHH
Confidence 58999999999999999999987642 234445555666555443 555544
No 137
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.07 E-value=0.00041 Score=57.78 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=24.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr 133 (330)
..|+|+|++|||||||.++|..... +....|.+|+.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~--~~~~~~~~t~~~~ 41 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV--YIGNWPGVTVEKK 41 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS--SCC-----CCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe--eccCCCCcceeee
Confidence 3689999999999999999986421 2233444555443
No 138
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=97.06 E-value=0.00027 Score=67.17 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=30.7
Q ss_pred chhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHh
Q psy933 282 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL 317 (330)
Q Consensus 282 ~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~ 317 (330)
.++++.+.|+|+||.|||||||+.||.+|+++|...
T Consensus 286 ~ae~E~~~~~~~FDyvIVNDdLe~A~~~L~~iI~~~ 321 (337)
T 4dey_A 286 AADKLAQCPPELFDVILDENQLEDACEHLADYLEAY 321 (337)
T ss_dssp HHHHHHHSCGGGCSEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCcccCCEEEECCCHHHHHHHHHHHHHHH
Confidence 345555678999999999999999999999999664
No 139
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.03 E-value=0.00046 Score=56.29 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=22.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP 132 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p 132 (330)
+.|+|+|++|||||||.++|..... .+....+.||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~ 39 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS-AVVADVPGVTRDL 39 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe-eeccCCCCceecc
Confidence 3589999999999999999997653 2333444555543
No 140
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.02 E-value=0.00014 Score=80.76 Aligned_cols=79 Identities=18% Similarity=0.224 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
++..++|+||||||||||++.|...++ |..|+ +||.|..-++.+.+.+. +.+..+|..++..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~-------------~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~ 509 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD-------------VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIE 509 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC-------------CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc-------------cccCcccCCCccchhccHHHHhhcccccCCcceeeCCchh
Confidence 568999999999999999998887764 34444 47877666666665553 3588899999999
Q ss_pred Cc-cccc---cHHHHHHHHHh
Q psy933 167 DA-MYGT---KLETIRRIHQE 183 (330)
Q Consensus 167 g~-~YGt---s~~~i~~v~~~ 183 (330)
+| .||. +.+.+.++++.
T Consensus 510 eNI~~g~~~~~~~~v~~a~~~ 530 (1321)
T 4f4c_A 510 ENISLGKEGITREEMVAACKM 530 (1321)
T ss_dssp HHHHTTCTTCCHHHHHHHHHH
T ss_pred HHHhhhcccchHHHHHHHHHH
Confidence 88 5885 45556655543
No 141
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.99 E-value=0.002 Score=64.74 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++..|+|+|++|+||||++++|.+.+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998764
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.98 E-value=0.0068 Score=59.14 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=35.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
..|+|+|.+|||||||.++|+.... ......+.|||..-.. +.+|..+.++|..-+
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGM 233 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT-EEEC---------CCEEEEETTEEEEETTHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCc-eeecCCCCceeeeeEEEEEECCeEEEEEECCCc
Confidence 4799999999999999999997532 1245677888876543 457777888876554
No 143
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.96 E-value=0.00046 Score=59.83 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..+..|+|+||||||||||++.|....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 346799999999999999999998765
No 144
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.95 E-value=0.0058 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||+++|...
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 145
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.95 E-value=0.0077 Score=59.10 Aligned_cols=163 Identities=11% Similarity=0.149 Sum_probs=80.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchhhHHhccceeeEEeecCccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMY 170 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~Y 170 (330)
..-|+|+|.+|||||||.++|..... .+....+.||+..-.. +.+|..+.++|..-+.+........ ..|
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~-------e~~ 266 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETT-------EKY 266 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCC-------SHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHH-------HHH
Confidence 34689999999999999999986532 3456677888877544 4578888888876654221111111 112
Q ss_pred cccHHHHHHHHHhCCeEEEEeCHH---------HHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHhhcc
Q psy933 171 GTKLETIRRIHQEGKIAILDVEPQ---------ALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYE 241 (330)
Q Consensus 171 Gts~~~i~~v~~~gk~~vldv~~~---------~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~~~~ 241 (330)
.. ..+ ...+.....+|+.+|.. -+..+.. .-.|++|.+.--+. ........+++.+..+..-. +.
T Consensus 267 ~~-~~~-~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl--~~~~~~~~~~~~~~~~~~~~-~~ 340 (456)
T 4dcu_A 267 SV-LRA-LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHE-AGKAVVIVVNKWDA--VDKDESTMKEFEENIRDHFQ-FL 340 (456)
T ss_dssp HH-HHH-HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TTCEEEEEEECGGG--SCCCSSHHHHHHHHHHHHCG-GG
T ss_pred HH-HHH-HHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHH-cCCCEEEEEEChhc--CCCchHHHHHHHHHHHHhcc-cC
Confidence 21 111 12344556666655431 1233333 33566665542221 11112222233332222111 11
Q ss_pred ccceEEE----ecCCHHHHHHHHHHHHHHhcC
Q psy933 242 HFFDLTV----VNNDIEETIGILEKAIEELHT 269 (330)
Q Consensus 242 ~~fD~vI----~N~dle~a~~~L~~~i~~~~~ 269 (330)
....++- .+.++++.+..|.+.+.....
T Consensus 341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 1223332 234899999988888765543
No 146
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.92 E-value=0.0047 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.432 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||+++|...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999864
No 147
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.92 E-value=0.0005 Score=69.84 Aligned_cols=27 Identities=30% Similarity=0.532 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|...++
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999999887654
No 148
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.91 E-value=0.00051 Score=58.70 Aligned_cols=37 Identities=57% Similarity=0.929 Sum_probs=32.3
Q ss_pred chhhhhhhccceeeEEEEcCCHHHHHHHHHHHHHHhc
Q psy933 282 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELH 318 (330)
Q Consensus 282 ~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~~~ 318 (330)
..+.|+..|.|+||.+|+|||++.|+.+|.++|.+++
T Consensus 144 ~~~~~~~~~~~~~d~~i~n~~~~~~~~~l~~~i~~~~ 180 (180)
T 1kgd_A 144 ESDILQRTYAHYFDLTIINNEIDETIRHLEEAVELVC 180 (180)
T ss_dssp HHHHHHHHHGGGCSEEEECSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhCCCcEEEECcCHHHHHHHHHHHHHHhC
Confidence 3456766799999999999999999999999998864
No 149
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.91 E-value=0.00057 Score=61.51 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||+|||||||.+.|....+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3568999999999999999998876553
No 150
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.88 E-value=0.022 Score=48.24 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=20.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
--|+|+|++|||||||+++|...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 151
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.87 E-value=0.0004 Score=60.32 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..|+|+||+|||||||++.|...++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999988643
No 152
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.87 E-value=0.019 Score=46.18 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+++|++|||||||+++|...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999865
No 153
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0012 Score=63.83 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=44.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
.|+|+|.++||||||.|.|....+ .....|.||+.|-.| +.+|..+.|++..-+
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~--~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl 129 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTES--EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGI 129 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCC--CGGGTCSSCCCEEEEEEEETTEEEEEEECGGG
T ss_pred eEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeeeeeEEEEeCCcEEEEEeCCCc
Confidence 699999999999999999998765 356678999999877 457778888877655
No 154
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.81 E-value=0.0011 Score=58.91 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=23.8
Q ss_pred cccceEEEecC--CHHHHHHHHHHHHHHh
Q psy933 241 EHFFDLTVVNN--DIEETIGILEKAIEEL 267 (330)
Q Consensus 241 ~~~fD~vI~N~--dle~a~~~L~~~i~~~ 267 (330)
....|+||.|+ +++++.+++..+++++
T Consensus 174 ~~~AD~VIdN~~gsle~l~~qV~~l~~~~ 202 (210)
T 4i1u_A 174 LAAADDVIVNDAATPDALAVQVDALHQRY 202 (210)
T ss_dssp HHTCSEEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HHhCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 36789999998 8999999999998876
No 155
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.81 E-value=0.0071 Score=50.41 Aligned_cols=22 Identities=41% Similarity=0.733 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 156
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.79 E-value=0.0006 Score=59.56 Aligned_cols=27 Identities=30% Similarity=0.514 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..|+|+||||||||||++.|...++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456999999999999999999987754
No 157
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.79 E-value=0.059 Score=44.88 Aligned_cols=22 Identities=36% Similarity=0.502 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 158
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.78 E-value=0.016 Score=48.25 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 159
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.78 E-value=0.00067 Score=59.41 Aligned_cols=24 Identities=13% Similarity=0.394 Sum_probs=21.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..|+|+||+||||||+++.|.+.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 160
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.77 E-value=0.015 Score=48.94 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 161
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.76 E-value=0.0047 Score=60.35 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=30.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD 135 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~ 135 (330)
..|+|+|++|||||||++.|....| .....+.||..|..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G 197 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLG 197 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceee
Confidence 5699999999999999999987755 223456777777554
No 162
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.76 E-value=0.00096 Score=61.27 Aligned_cols=27 Identities=15% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|||||||.+.|....+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 568999999999999999998886653
No 163
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.76 E-value=0.001 Score=57.98 Aligned_cols=125 Identities=14% Similarity=0.083 Sum_probs=69.8
Q ss_pred ccccccHHHHHHHHHhCCeEEEE--------eCHHHHHHHHhcCCCCEEEE-EccCccccccCchHHHHHHHHHHHHHHh
Q psy933 168 AMYGTKLETIRRIHQEGKIAILD--------VEPQALKILRTGEFSPFVVF-IAAPQLQNLSDYDGSLEKLAKESDILKS 238 (330)
Q Consensus 168 ~~YGts~~~i~~v~~~gk~~vld--------v~~~~v~~L~~~~~~p~vIf-I~pps~~~l~~~~e~~~rl~~~~~~ie~ 238 (330)
++|-.+.+..++.+++|...--. ...+.+...-..+. .+|+ |.+ +....+..
T Consensus 49 dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~~v~~~l~~g~--~vil~id~-----------------~g~~~~k~ 109 (186)
T 1ex7_A 49 DYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGK--TCILDIDM-----------------QGVKSVKA 109 (186)
T ss_dssp TBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTS--EEEEECCH-----------------HHHHHHHT
T ss_pred eeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecceeeehhhCCC--EEEecCCH-----------------HHHHHHHH
Confidence 57889999999999999864321 23445555444443 2222 221 11122222
Q ss_pred hccccceEE-EecCCHHHHHHHHHHHHHHhcCCCccccccccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHH
Q psy933 239 AYEHFFDLT-VVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE 315 (330)
Q Consensus 239 ~~~~~fD~v-I~N~dle~a~~~L~~~i~~~~~~~~WvP~sw~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~ 315 (330)
.++...-.| |.-.+++..-+.|..- .++..=.=...|......|+..+.+.||.|||||||+.|+.+|+++|.
T Consensus 110 ~~~~~~~~Ifi~pps~e~L~~RL~~R----g~e~~e~i~~Rl~~a~~e~~~~~~~~fD~vIvNddle~a~~~l~~iI~ 183 (186)
T 1ex7_A 110 IPELNARFLFIAPPSVEDLKKRLEGR----GTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIF 183 (186)
T ss_dssp CGGGCCEEEEEECSCHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHHTTTCSSEEEECSSHHHHHHHHHHHHT
T ss_pred hcccCceEEEEeCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHhhccccCCcEEEECcCHHHHHHHHHHHHH
Confidence 233222223 3344666555444321 111110001133344556777778899999999999999999999874
No 164
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.75 E-value=0.013 Score=49.58 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||+++|....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998764
No 165
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.75 E-value=0.00089 Score=61.58 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=36.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccC-CeeEEEec
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN-GRAYYFIS 146 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~-G~dy~fvs 146 (330)
..|+|+|++|||||||.++|.... .+....|.||..+..+..+ |..+.+++
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~D 55 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQD 55 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEE
Confidence 468999999999999999998653 2455566777776666554 33444544
No 166
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.73 E-value=0.0067 Score=54.98 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=43.1
Q ss_pred CCeEEEEeCHH-HHHHHHhcCCCCEEEEEccCccccccCchHHHHHHHHHHHHHHh-hccccceEEEecC-CHHHHHHHH
Q psy933 184 GKIAILDVEPQ-ALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKS-AYEHFFDLTVVNN-DIEETIGIL 260 (330)
Q Consensus 184 gk~~vldv~~~-~v~~L~~~~~~p~vIfI~pps~~~l~~~~e~~~rl~~~~~~ie~-~~~~~fD~vI~N~-dle~a~~~L 260 (330)
+.++|+++... -+++++..+ ..+++|..+....+... .-+. .+....|+||.|+ +++++.+++
T Consensus 169 d~VvVvdv~~~~qieRl~~rg--~~~v~i~~~~~~~i~~Q------------~se~~~k~~~AD~VI~N~gsle~l~~qV 234 (241)
T 1dek_A 169 DYYIVPDTRQDHEMDAARAMG--ATVIHVVRPGQKSNDTH------------ITEAGLPIRDGDLVITNDGSLEELFSKI 234 (241)
T ss_dssp SEEEECCCCSHHHHHHHHHTT--CEEEEEECTTCCCSCCS------------GGGSCCCCCTTCEEEECCSCHHHHHHHH
T ss_pred CEEEEEcCCcHHHHHHHHHCC--CceEEEECcccchhhcC------------CCcccccccCCCEEEECCCCHHHHHHHH
Confidence 45666677654 367777753 36777776532111100 0011 2457899999998 799999999
Q ss_pred HHHHHH
Q psy933 261 EKAIEE 266 (330)
Q Consensus 261 ~~~i~~ 266 (330)
..++++
T Consensus 235 ~~ll~~ 240 (241)
T 1dek_A 235 KNTLKV 240 (241)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 988764
No 167
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.73 E-value=0.00076 Score=60.37 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+..|+|+||+|||||||++.|.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999664
No 168
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.72 E-value=0.00073 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=20.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..|+|+|++|||||||.++|...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 169
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.71 E-value=0.0011 Score=61.71 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=25.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCcccccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 126 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~ 126 (330)
.+..++|+||||||||||++.|. ..+- -.+.|+
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~-~~G~i~ 196 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEEL-RTQEVS 196 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCC-CCSCC-
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhC-cccccc
Confidence 45799999999999999999999 6542 344444
No 170
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.70 E-value=0.0043 Score=58.99 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=30.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD 135 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~ 135 (330)
-|+|+|.++||||||+++|....| .....+.||..|..+
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~--~i~~~~ftTl~p~~g 198 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLG 198 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC--EESSTTSSCCCCCEE
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC--ccccCCccccCceEE
Confidence 488999999999999999987654 223456778777554
No 171
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.69 E-value=0.001 Score=61.51 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|||||||.+.|....+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 467999999999999999998876554
No 172
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.68 E-value=0.0012 Score=63.37 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=31.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISH 147 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~ 147 (330)
+.|+|+|++|||||||.++|..... .....+.||+.+..+. .+|..+.+++.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g~~v~l~DT 233 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINNRKIMLVDT 233 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECCEEEEEEeC
Confidence 3599999999999999999987542 3445678888876553 35655555543
No 173
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.67 E-value=0.00073 Score=57.35 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=19.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLI 114 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~ 114 (330)
.+..++|+||+|||||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 45789999999999999999743
No 174
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.022 Score=47.85 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
...|+|+|++|||||||+++|....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998764
No 175
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.66 E-value=0.00053 Score=69.65 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|...++
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 568999999999999999998887654
No 176
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.66 E-value=0.015 Score=48.82 Aligned_cols=22 Identities=41% Similarity=0.706 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.|+|+|++|||||||+++|...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 177
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.65 E-value=0.0021 Score=62.86 Aligned_cols=56 Identities=23% Similarity=0.371 Sum_probs=34.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
+.|+|+|.+|||||||.++|..... .+....|.|||....+ +.+|..+.++|..-+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~ 59 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGV 59 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCc
Confidence 4699999999999999999986542 2456678889887665 447888888776543
No 178
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.63 E-value=0.0012 Score=59.46 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457999999999999999999887654
No 179
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.62 E-value=0.043 Score=45.29 Aligned_cols=23 Identities=17% Similarity=0.556 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||+++|...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 36899999999999999999864
No 180
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.61 E-value=0.00034 Score=71.29 Aligned_cols=64 Identities=14% Similarity=0.244 Sum_probs=39.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCccc--CCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEE--NGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~--~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
.+..++|+||+|+|||||++.|...++ |..|++ +|.+..-++...+.+. +.++.++..++..
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~-------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~ 434 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID-------------PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIK 434 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC-------------CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-------------CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHH
Confidence 568999999999999999998876654 334433 6665443343333332 2244444445555
Q ss_pred Cc
Q psy933 167 DA 168 (330)
Q Consensus 167 g~ 168 (330)
+|
T Consensus 435 en 436 (587)
T 3qf4_A 435 EN 436 (587)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 181
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.60 E-value=0.0016 Score=53.31 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||.++|....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 182
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=96.60 E-value=0.0007 Score=50.03 Aligned_cols=32 Identities=16% Similarity=0.569 Sum_probs=27.4
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|+++.|++||+++..+..+..|++|+...
T Consensus 34 ~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv 65 (76)
T 2ed1_A 34 VIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 65 (76)
T ss_dssp EEEESSCCSSSEEEEEETTCTTCEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEECCCCCCEEEEehHHe
Confidence 57899999999999998766689999998664
No 183
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.60 E-value=0.0038 Score=62.16 Aligned_cols=56 Identities=23% Similarity=0.360 Sum_probs=43.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
-.|+|+|++|||||||.++|..... .+....+.|||.+-.. +.+|..+.++|..-+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~ 301 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGV 301 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCc
Confidence 3699999999999999999998743 2567788999987665 347777777776543
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.59 E-value=0.0018 Score=59.32 Aligned_cols=26 Identities=12% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
...+++|.||+|+|||+|++.|.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999887664
No 185
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.58 E-value=0.00026 Score=71.90 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||+|+|||||.+.|...++
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 3568999999999999999998876654
No 186
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.56 E-value=0.0012 Score=54.05 Aligned_cols=22 Identities=23% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 187
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.56 E-value=0.005 Score=57.68 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+.|+|.||+|+|||+|++.|+...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3689999999999999999999875
No 188
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.56 E-value=0.063 Score=45.22 Aligned_cols=22 Identities=9% Similarity=0.299 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|+..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 189
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.55 E-value=0.0015 Score=60.38 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++.++|.||+|+|||+|++.|++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578888999999999999998765
No 190
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.55 E-value=0.0019 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||.++|....
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 191
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.53 E-value=0.0013 Score=54.27 Aligned_cols=22 Identities=36% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5899999999999999999864
No 192
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.53 E-value=0.0025 Score=53.61 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDK 120 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~ 120 (330)
-|+|+|++|||||||++.|...++..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~~ 41 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPEG 41 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhcccc
Confidence 68999999999999998887766543
No 193
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.52 E-value=0.0014 Score=63.20 Aligned_cols=28 Identities=14% Similarity=0.132 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||||||||||++.|....+
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 3568999999999999999998876543
No 194
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.52 E-value=0.0015 Score=56.18 Aligned_cols=24 Identities=17% Similarity=0.607 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.++|+||+|+|||||++.|+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987763
No 195
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=96.51 E-value=0.0022 Score=62.70 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=31.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDE 149 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~ 149 (330)
..|+|+|.+|||||||.++|..... ......|.|||....+ +.+|..+.++|..-
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G 60 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG 60 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCC
Confidence 5799999999999999999987532 1344567788876544 34566677776543
No 196
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.51 E-value=0.00048 Score=70.15 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|...++
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 568999999999999999998887654
No 197
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.51 E-value=0.0021 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 198
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.50 E-value=0.0018 Score=62.14 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||.+.|+...+
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 567999999999999999998887654
No 199
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.49 E-value=0.00073 Score=63.52 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||++.|....+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHhccccc
Confidence 468999999999999999999986543
No 200
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.47 E-value=0.0018 Score=54.76 Aligned_cols=28 Identities=18% Similarity=0.342 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
.+..++|+||+|+|||||.+.|+...|.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~~ 59 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4568999999999999999999987753
No 201
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.46 E-value=0.0024 Score=60.99 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
.+..++|+||+|+|||||++.|+..++.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 5679999999999999999999988763
No 202
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.46 E-value=0.0015 Score=64.20 Aligned_cols=56 Identities=16% Similarity=0.206 Sum_probs=32.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDE 149 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~ 149 (330)
.+.|+|+|.+|||||||.++|...... .....|.+||....+. ..|..+.+++..-
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G 80 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGG 80 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCC
Confidence 357999999999999999999865321 2334567787765543 3566677776554
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.46 E-value=0.00095 Score=63.56 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=21.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..|+|+|++|||||||.++|...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999864
No 204
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=96.46 E-value=0.0012 Score=47.34 Aligned_cols=30 Identities=33% Similarity=0.890 Sum_probs=25.0
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|++++|++||+++.. ++..|++||...
T Consensus 27 ~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv 56 (65)
T 1b07_A 27 ILRIRDKPEEQWWNAEDS--EGKRGMIPVPYV 56 (65)
T ss_dssp EEEEEECSSSSEEEEECT--TSCEEEEEGGGE
T ss_pred EEEEEEecCCCeEEEEEC--CCCEEEEChHHE
Confidence 578999999999999843 478999999653
No 205
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.44 E-value=0.0021 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+||+|||||||+++|....
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 206
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.44 E-value=0.0014 Score=63.39 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||.+.|+...+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 567999999999999999999987654
No 207
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.44 E-value=0.0014 Score=60.99 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISH 147 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~ 147 (330)
...|+|+|++|||||||.++|+.... ......+.|||....+- .++..+.|++.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~-~i~s~~~~tTr~~~~gi~~~~~~~i~~iDT 63 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDT 63 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCCCcceeeEEEEEEECCeeEEEEEC
Confidence 34799999999999999999986421 01233566777543321 13444555554
No 208
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.44 E-value=0.0017 Score=54.15 Aligned_cols=24 Identities=17% Similarity=0.487 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..-|+|+|++|||||||.++|...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 347999999999999999999854
No 209
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.43 E-value=0.0016 Score=55.13 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++.++|+||+|+|||||++.|+...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988764
No 210
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.42 E-value=0.0013 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||.++|....
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999997543
No 211
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.41 E-value=0.02 Score=49.27 Aligned_cols=25 Identities=12% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
...|+|+|++|||||||.++|....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998764
No 212
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.41 E-value=0.0016 Score=53.55 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999753
No 213
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.41 E-value=0.0017 Score=57.81 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|||||||.+.|....+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999999999999998876543
No 214
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.40 E-value=0.0016 Score=59.14 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=34.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH 147 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~ 147 (330)
+.|+|+|++|||||||.++|.... ......|.+|.....+ +.+|..+.+++.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDt 55 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDL 55 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeC
Confidence 468999999999999999998653 2334455666544333 224555555543
No 215
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.37 E-value=0.0011 Score=56.83 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=22.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.++|+||||||||||++.|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999988754
No 216
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.36 E-value=0.003 Score=58.82 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=28.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP 132 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p 132 (330)
..|+|+|.+|||||||.++|+.... ......|.|||..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~-~ivs~~~~tTr~~ 45 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKR 45 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCce-eeecCCCCceeEE
Confidence 4699999999999999999986532 1123466788754
No 217
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.36 E-value=0.0024 Score=54.75 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.|+|+||+|||||||.++|....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 218
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.33 E-value=0.032 Score=47.73 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 6899999999999999999864
No 219
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.33 E-value=0.0022 Score=56.53 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=21.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLI 114 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~ 114 (330)
.+..++|+||+|+|||||++.|+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 46799999999999999999887
No 220
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=96.33 E-value=0.001 Score=47.33 Aligned_cols=29 Identities=24% Similarity=0.744 Sum_probs=23.9
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE 31 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~ 31 (330)
|+.|++++|++||.++.. +++.|++|+..
T Consensus 28 ~i~v~~~~~~~Ww~g~~~--~G~~G~fP~ny 56 (60)
T 2lx7_A 28 LITLLQVPDGGWWEGEKE--DGLRGWFPASY 56 (60)
T ss_dssp EEEBSCCCTTSCEEEECT--TSCEEEECGGG
T ss_pred EEEEeEecCCCeEEEEeC--CCCEEEEcHHH
Confidence 578899999999999852 46789999865
No 221
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.32 E-value=0.00096 Score=57.37 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=22.1
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..+..|+|+|++|||||||.++|...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999998754
No 222
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.31 E-value=0.0037 Score=56.09 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=34.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCcccc-ccc-cccCCCC--cccCCeeEEEecccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYP-VPH-TTRSPRS--DEENGRAYYFISHDE 149 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~-v~~-TTR~pr~--~E~~G~dy~fvs~~~ 149 (330)
..|+|+|++|||||||.++|+... .|... .+. ||+.... ...+|..+.+++..-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG 80 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ--AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPD 80 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC--CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCG
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcC
Confidence 479999999999999999998643 23222 222 5554432 234566666666543
No 223
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.30 E-value=0.0033 Score=58.45 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||++.|....+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 457999999999999999999986543
No 224
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.30 E-value=0.0021 Score=59.08 Aligned_cols=24 Identities=25% Similarity=0.567 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.++|+||+|+|||||++.|....+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999987643
No 225
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.30 E-value=0.0027 Score=52.81 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+.++|+||+|+|||+|++.+++...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 347899999999999999999987653
No 226
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.30 E-value=0.003 Score=60.61 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||++.|+...+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 457999999999999999999987654
No 227
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.29 E-value=0.0022 Score=58.63 Aligned_cols=27 Identities=11% Similarity=0.217 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|||||||.+.|....+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 568999999999999999998876543
No 228
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.29 E-value=0.0031 Score=60.72 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||.+.|+...+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 567999999999999999998886653
No 229
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.29 E-value=0.0022 Score=58.04 Aligned_cols=27 Identities=11% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999998876653
No 230
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=96.29 E-value=0.003 Score=46.41 Aligned_cols=32 Identities=31% Similarity=0.709 Sum_probs=25.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCc------eeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSA------GLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~------GlIPS~~~ 32 (330)
||+|++++|++||+++.....+.. |++|+...
T Consensus 31 ~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv 68 (77)
T 2d8j_A 31 KLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYV 68 (77)
T ss_dssp CEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTE
T ss_pred EEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHe
Confidence 689999999999999986432455 99999664
No 231
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.28 E-value=0.0036 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 232
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=96.28 E-value=0.0021 Score=46.42 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=25.4
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|+.|+++.|++||.++.. .+++.|++|+...
T Consensus 30 ~i~v~~~~~~gWw~g~~~-~~g~~G~~P~nyV 60 (65)
T 2lj0_A 30 IVDVMEKCDDGWFVGTSR-RTKQFGTFPGNYV 60 (65)
T ss_dssp EEEEEEECTTSEEEEEET-TTCCEEEEETTSE
T ss_pred EEEEeEeCCCCEEEEEEC-CCCCEEEEehhHe
Confidence 578999999999999864 3578999998653
No 233
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.28 E-value=0.0019 Score=58.09 Aligned_cols=26 Identities=15% Similarity=0.455 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||+|||||||.+.|....
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 56799999999999999999887654
No 234
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=96.27 E-value=0.03 Score=49.41 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=23.7
Q ss_pred ccceEEEecC-CHHHHHHHHHHHHHHhcC
Q psy933 242 HFFDLTVVNN-DIEETIGILEKAIEELHT 269 (330)
Q Consensus 242 ~~fD~vI~N~-dle~a~~~L~~~i~~~~~ 269 (330)
..+|++|+|| ++++..++|..++..++.
T Consensus 164 ~~~D~vI~Ndgt~eel~~~v~~ll~~~~~ 192 (202)
T 3ch4_B 164 GDFDWVIENHGVEQRLEEQLENLIEFIRS 192 (202)
T ss_dssp CCCSEEEEECSCHHHHHHHHHHHHHHHHT
T ss_pred CcCCEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 3699999998 899999999988887653
No 235
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.0066 Score=59.59 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=22.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+|=|+|.||+|+|||+|++.|+...
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999998764
No 236
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.26 E-value=0.0024 Score=57.13 Aligned_cols=27 Identities=15% Similarity=0.444 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 568999999999999999998876553
No 237
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.25 E-value=0.0029 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4889999999999999999865
No 238
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.24 E-value=0.0011 Score=73.48 Aligned_cols=78 Identities=17% Similarity=0.274 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc--cCCeeEEEecccchhhH---HhccceeeEEeec
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE--ENGRAYYFISHDEMMSD---IAANQYLEYGTHE 166 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E--~~G~dy~fvs~~~f~~~---i~~~~fle~~~~~ 166 (330)
.+..++|+||||+|||||++.|...++ |..|+ ++|.+...++.....+. +.+..++..++..
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~-------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 481 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYD-------------PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSC-------------CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-------------CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHH
Confidence 568999999999999999998877654 33444 37776555554444332 2355555555555
Q ss_pred Cc-cccc---cHHHHHHHHH
Q psy933 167 DA-MYGT---KLETIRRIHQ 182 (330)
Q Consensus 167 g~-~YGt---s~~~i~~v~~ 182 (330)
+| .||. +.+.+.++++
T Consensus 482 eNi~~g~~~~~~~~~~~~~~ 501 (1284)
T 3g5u_A 482 ENIRYGREDVTMDEIEKAVK 501 (1284)
T ss_dssp HHHHHHCSSCCHHHHHHHHH
T ss_pred HHHhcCCCCCCHHHHHHHHH
Confidence 55 3553 3445555443
No 239
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.24 E-value=0.0022 Score=60.16 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..|+|+||+|||||||++.|....+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3456999999999999999999987653
No 240
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.23 E-value=0.0016 Score=59.62 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|||||||++.|+...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 456899999999999999999987653
No 241
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.23 E-value=0.0038 Score=50.96 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 242
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.23 E-value=0.0025 Score=57.97 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999998876553
No 243
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.23 E-value=0.0032 Score=61.11 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=34.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE 136 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E 136 (330)
++..++|+|++|||||||.+.|..... .-....|.||+.|..|.
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~ 62 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAK 62 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeee
Confidence 456899999999999999999987532 13455788899988774
No 244
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.22 E-value=0.0026 Score=57.29 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567999999999999999998886654
No 245
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.0072 Score=59.48 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+|=|+|.||+|+|||.|++.|+.+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999999999999999999764
No 246
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.21 E-value=0.0024 Score=57.15 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..|.|+||+|||||||++.|....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998764
No 247
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.21 E-value=0.0034 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||+++|....
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998653
No 248
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.21 E-value=0.0026 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|....+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 567999999999999999998876653
No 249
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.20 E-value=0.0026 Score=58.01 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 567999999999999999999886554
No 250
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.20 E-value=0.0028 Score=59.47 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-..+..++|+||+|+|||||++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3456899999999999999999998775
No 251
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.20 E-value=0.0038 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||+++|....
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 252
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.20 E-value=0.0023 Score=58.20 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.|+|+|++|||||||.++|....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999998653
No 253
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=96.19 E-value=0.0022 Score=44.40 Aligned_cols=30 Identities=33% Similarity=0.890 Sum_probs=24.8
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+++|++++|++||+++.. ++..|++|+...
T Consensus 25 ~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv 54 (57)
T 1cka_A 25 ILRIRDKPEEQWWNAEDS--EGKRGMIPVPYV 54 (57)
T ss_dssp EEEEEECSSSSEEEEECT--TSCEEEEEGGGE
T ss_pred EEEEEEecCCCcEEEEeC--CCCEEEEeHHHE
Confidence 478999999999999854 378999998653
No 254
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.19 E-value=0.0027 Score=58.20 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 567999999999999999998876543
No 255
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=96.18 E-value=0.0018 Score=46.70 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=25.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCC--CceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAG--SAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~--~~GlIPS~~~ 32 (330)
|+.|+++.|++||+++..+..+ ..|++|+...
T Consensus 31 ~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv 64 (68)
T 1tg0_A 31 EIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64 (68)
T ss_dssp EEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGE
T ss_pred EEEEEEecCCCeEEEEECCCCCCCEEEEEchHHE
Confidence 5789999999999999864322 7899998653
No 256
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.18 E-value=0.0027 Score=60.70 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||.+.|+...+
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 567999999999999999998886654
No 257
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.18 E-value=0.0025 Score=55.52 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..++|+||+|+|||||++.|+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999864
No 258
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.16 E-value=0.0037 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||.++|....
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998653
No 259
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.15 E-value=0.0025 Score=56.58 Aligned_cols=27 Identities=19% Similarity=0.422 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467899999999999999998876543
No 260
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.15 E-value=0.0024 Score=59.28 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..|+|+||||||||||++.|...++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345899999999999999999987764
No 261
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.15 E-value=0.0033 Score=58.07 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=22.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr 133 (330)
..++|+|.+|||||||.|.|..... .-....|.|||.+.
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~-~~~~~~~g~T~~~~ 159 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNI-AKTGDRPGITTSQQ 159 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC-C------------C
T ss_pred ceEEEEecCCCchHHHHHHHhcCce-eecCCCCCeeeeeE
Confidence 3689999999999999999987542 23556788888764
No 262
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.15 E-value=0.046 Score=51.08 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+++.|+|+||+|+||||++..|+..+.
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 456899999999999999999987653
No 263
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.14 E-value=0.0026 Score=63.25 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=28.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccchh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEMM 151 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f~ 151 (330)
.|+|+|++|||||||.++|..... .+....+.|||..... +.+|..+.+++..-+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~ 292 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLR 292 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC-----
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCC
Confidence 599999999999999999987632 3566688899987554 4578888888765543
No 264
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.13 E-value=0.0013 Score=66.97 Aligned_cols=28 Identities=25% Similarity=0.454 Sum_probs=24.2
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||+|+|||||.+.|...++
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 3568999999999999999998887654
No 265
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.13 E-value=0.0029 Score=55.24 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~ 115 (330)
+..|+|+|++||||||+++.|.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 266
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.13 E-value=0.0045 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.451 Sum_probs=21.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.-|+|+|++|||||||+++|....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 267
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.13 E-value=0.0016 Score=48.06 Aligned_cols=32 Identities=19% Similarity=0.514 Sum_probs=26.4
Q ss_pred CcEEEeCCCCCceeEEeCCC-CCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNV-AGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~-~~~~GlIPS~~~ 32 (330)
||+|++++|++||+++..+. ++..|++|+..+
T Consensus 33 ~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv 65 (75)
T 2egc_A 33 SMEVLERNPNGWWYCQILDGVKPFKGWVPSNYL 65 (75)
T ss_dssp EEEECEECTTSEEEEEECCSSSCEEEEEEGGGE
T ss_pred EEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHC
Confidence 57899999999999998543 368999998765
No 268
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.12 E-value=0.0031 Score=57.31 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 567999999999999999999887654
No 269
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.12 E-value=0.0033 Score=56.94 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..++|+||+|+|||||.+.|...
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5679999999999999999988764
No 270
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.11 E-value=0.0032 Score=52.41 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+.++|+||+|+|||+|++.+.+...
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999987753
No 271
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.11 E-value=0.0045 Score=50.72 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 272
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=96.10 E-value=0.0023 Score=44.37 Aligned_cols=29 Identities=34% Similarity=0.842 Sum_probs=24.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+++|+++.|++||+++. ++..|++|+...
T Consensus 26 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 54 (58)
T 1sem_A 26 VITLINKDDPNWWEGQL---NNRRGIFPSNYV 54 (58)
T ss_dssp EEEEEECSSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEechHHe
Confidence 47899999999999997 368999998653
No 273
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.0084 Score=58.42 Aligned_cols=26 Identities=19% Similarity=0.451 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.++=|+|.||+|+|||.|++.|+.+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 34679999999999999999998764
No 274
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=96.10 E-value=0.0032 Score=43.77 Aligned_cols=30 Identities=33% Similarity=0.586 Sum_probs=25.2
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE 31 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~ 31 (330)
+++|+++.|++||.++.. .++..|++|+..
T Consensus 24 ~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~y 53 (58)
T 1jo8_A 24 KIINIEFVDDDWWLGELE-KDGSKGLFPSNY 53 (58)
T ss_dssp EEEEEECCSSSEEEEEET-TTCCEEEEEGGG
T ss_pred EEEEEEecCCCcEEEEEC-CCCCEEEechHH
Confidence 478999999999999875 347899999865
No 275
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=96.10 E-value=0.0011 Score=46.23 Aligned_cols=29 Identities=38% Similarity=0.833 Sum_probs=24.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|+|+.+.|++||.++. ++..|++|+...
T Consensus 27 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 55 (58)
T 1zlm_A 27 IIYITDMSDTNWWKGTS---KGRTGLIPSNYV 55 (58)
T ss_dssp EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEeCCCCEEEEEE---CCCEEEEehHHE
Confidence 57899999999999986 568999998754
No 276
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=96.10 E-value=0.15 Score=43.67 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 277
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.09 E-value=0.0032 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
--|+|+|++|||||||.++|...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 36899999999999999999864
No 278
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.09 E-value=0.0032 Score=57.42 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||+|+|||||.+.|....+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567999999999999999998876653
No 279
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.09 E-value=0.0028 Score=59.08 Aligned_cols=28 Identities=14% Similarity=0.172 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..|+|+||+|||||||++.|....+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999987643
No 280
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.09 E-value=0.005 Score=50.20 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||.++|....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38899999999999999998653
No 281
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A
Probab=96.08 E-value=0.0009 Score=53.36 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=26.3
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|+.|++++|++||+++..+..+..|+|||...
T Consensus 29 ~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV 60 (108)
T 2rqv_A 29 NLFICAHHNCEWFIAKPIGRLGGPGLVPVGFV 60 (108)
T ss_dssp EECCCCEETTTEEEECCSSSSCCCEEEESTTC
T ss_pred EEEEeEecCCCEEEEEECCccCCeeEeecceE
Confidence 46788888999999988666677899999765
No 282
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.08 E-value=0.0032 Score=58.16 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999998876654
No 283
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.08 E-value=0.004 Score=50.91 Aligned_cols=22 Identities=23% Similarity=0.610 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 284
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.08 E-value=0.0028 Score=56.11 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.++.|+|+||||+|||+|+..|++...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 357899999999999999999998643
No 285
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.08 E-value=0.0053 Score=55.69 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=33.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEeccc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHD 148 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~ 148 (330)
..|+|+|++|+|||||.++|+.... .+....+.||+.+... +.+|..+.++|..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTp 95 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTP 95 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeeEEEEEeeCCeEEEEEECC
Confidence 3689999999999999999986542 1223344455543222 2344555555543
No 286
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.07 E-value=0.0031 Score=52.14 Aligned_cols=23 Identities=22% Similarity=0.507 Sum_probs=20.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||+++|...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999754
No 287
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.06 E-value=0.0027 Score=53.63 Aligned_cols=22 Identities=23% Similarity=0.599 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 288
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.06 E-value=0.004 Score=54.16 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..++++|.||+|+|||+|++.|....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 289
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.06 E-value=0.0034 Score=57.06 Aligned_cols=27 Identities=26% Similarity=0.503 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467999999999999999998887654
No 290
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=96.05 E-value=0.0026 Score=44.12 Aligned_cols=29 Identities=24% Similarity=0.784 Sum_probs=24.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+++|+++.|++||.++. ++..|++|+...
T Consensus 26 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 54 (58)
T 2vwf_A 26 FIHVMDNSDPNWWKGAC---HGQTGMFPRNYV 54 (58)
T ss_dssp EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEcCCCCEEEEEE---CCcEEEEchHHe
Confidence 47899999999999987 568999998653
No 291
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.05 E-value=0.005 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999865
No 292
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.05 E-value=0.0039 Score=58.34 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..|+|+||+||||||+++.|...++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999987654
No 293
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.05 E-value=0.0042 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=21.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||.++|...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999999875
No 294
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.05 E-value=0.0027 Score=52.93 Aligned_cols=26 Identities=15% Similarity=0.434 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||+|+|||+|++.|....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56799999999999999999998764
No 295
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=96.04 E-value=0.0037 Score=46.25 Aligned_cols=31 Identities=23% Similarity=0.804 Sum_probs=25.2
Q ss_pred CcEEEeCC-CCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKD-DHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~-D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|++++ |.+||+++.. .++..|++||...
T Consensus 42 ~i~v~~~~~~~gWw~g~~~-~~g~~G~fP~nyV 73 (78)
T 1k1z_A 42 IVELTKAEAEHNWWEGRNT-ATNEVGWFPCNRV 73 (78)
T ss_dssp EEEEEECCSSCSCEEEEET-TTTEEEEECSTTE
T ss_pred EEEEEEcCCCCCeEEEEEC-CCCCEEEEehHHe
Confidence 57899995 9999999864 3567999999653
No 296
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.04 E-value=0.0051 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.620 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 297
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.04 E-value=0.0037 Score=57.24 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..++|+||+|+|||||.+.|...
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5679999999999999999988764
No 298
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.04 E-value=0.0035 Score=57.32 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||.+.|....+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 567999999999999999998876543
No 299
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=96.03 E-value=0.0027 Score=44.11 Aligned_cols=29 Identities=21% Similarity=0.700 Sum_probs=24.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
++.|+++.|++||.++. ++..|++|+...
T Consensus 25 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 53 (58)
T 1uti_A 25 VVEVLDSSNPSWWTGRL---HNKLGLFPANYV 53 (58)
T ss_dssp EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEECCCCEEEEEE---CCeEEEeeHHHe
Confidence 47899999999999986 468999998653
No 300
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=96.02 E-value=0.0028 Score=44.06 Aligned_cols=29 Identities=31% Similarity=0.762 Sum_probs=24.6
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+++|+.++|++||.++. ++..|++|+...
T Consensus 25 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 53 (58)
T 2bz8_A 25 IITNIRKEDGGWWEGQI---NGRRGLFPDNFV 53 (58)
T ss_dssp EEEEEECCTTTEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEeCCCCEEEEEE---CCeEEEEehHHe
Confidence 47899999999999986 468999998653
No 301
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.01 E-value=0.0064 Score=51.73 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..|+|+|++|||||||.++|....
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998653
No 302
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=96.00 E-value=0.0031 Score=45.25 Aligned_cols=30 Identities=43% Similarity=0.897 Sum_probs=25.0
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+++.|++||+++.. ++..|++|+...
T Consensus 26 ~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv 55 (67)
T 1gl5_A 26 EYIILEKNDLHWWRARDK--YGSEGYIPSNYV 55 (67)
T ss_dssp EEEEEECSSSSEEEEECS--SSCEEEEETTSE
T ss_pred EEEEEEccCCCcEEEEEC--CCCEEEEEhHhE
Confidence 578999999999999854 467999999764
No 303
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.99 E-value=0.013 Score=54.54 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+.|+|.||+|+|||+|++.+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3679999999999999999998763
No 304
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.99 E-value=0.0037 Score=56.38 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..++|+||+|+|||||.+.|....+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999887654
No 305
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=95.98 E-value=0.0025 Score=63.13 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=39.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecccch
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISHDEM 150 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~~~f 150 (330)
.|+|+|++|||||||.++|..... .+....+.|||..... ..+|..+.+++..-+
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~ 282 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGI 282 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHB-SCCSCCTTCCHHHHHHEEEETTEEEEECC----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCeeEEEEEEEEEECCEEEEEEECCcc
Confidence 599999999999999999987632 2455667788865433 457888888876655
No 306
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=95.98 E-value=0.003 Score=43.78 Aligned_cols=29 Identities=24% Similarity=0.656 Sum_probs=24.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+++|+.++|++||.++. ++..|++|+...
T Consensus 27 ~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv 55 (58)
T 2drm_A 27 TIIVHQKDPAGWWEGEL---NGKRGWVPANYV 55 (58)
T ss_dssp EEEEEECCTTSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEEeHHHE
Confidence 47899999999999987 468999998653
No 307
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.97 E-value=0.0029 Score=60.20 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
....|+|+|++|||||||+++|...+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998653
No 308
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.97 E-value=0.0058 Score=62.37 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=37.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc---------cCCeeEEEecccch
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE---------ENGRAYYFISHDEM 150 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E---------~~G~dy~fvs~~~f 150 (330)
..|+|+|++|||||||+|+|..... .| .+++|||....|- ..|..+.++|..-+
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~-~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKK-GF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGL 101 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS-CS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCB
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCC-cc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCc
Confidence 4688999999999999999987642 23 6777877654442 13455666665544
No 309
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.97 E-value=0.0055 Score=49.93 Aligned_cols=22 Identities=32% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 310
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.0095 Score=58.55 Aligned_cols=26 Identities=15% Similarity=0.307 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+|=|+|.||+|+|||.|++.|+.+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999864
No 311
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.95 E-value=0.0056 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 312
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.95 E-value=0.0031 Score=55.96 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..|+|.||+|||||||++.|...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999988775
No 313
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.95 E-value=0.0042 Score=54.03 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=22.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..++|+||+|+|||||++.|+...+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999987764
No 314
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}
Probab=95.94 E-value=0.0026 Score=51.41 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=27.6
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|++++|++||+++..+..+..|++|+...
T Consensus 27 ~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv 58 (120)
T 2kym_A 27 NLSICAHYDYEWFIAKPINRLGGPGLVPVSYV 58 (120)
T ss_dssp EEEEEEEETTTEEEEEESSSCSCCCCEEGGGE
T ss_pred EEEEEEecCCCEEEEEECCCCCCEEEEchHHE
Confidence 57899999999999998666788999999764
No 315
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.94 E-value=0.0035 Score=57.37 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=33.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH 147 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~ 147 (330)
..|+|+|.+|||||||.++|.... ......|.||..+..+ +.+|..+.+++.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDt 57 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDL 57 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEEC
Confidence 368999999999999999998754 2334455556544333 223444555543
No 316
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.93 E-value=0.0092 Score=56.65 Aligned_cols=25 Identities=16% Similarity=0.413 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+.|+|.||+|+|||+|++.|+...
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3579999999999999999998764
No 317
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=95.93 E-value=0.0038 Score=43.21 Aligned_cols=31 Identities=13% Similarity=0.329 Sum_probs=25.6
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|+.|+.++|++||.++.. .++..|++|+...
T Consensus 25 ~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv 55 (58)
T 1zuy_A 25 VIYITREEPSGWSLGKLL-DGSKEGWVPTAYM 55 (58)
T ss_dssp EEEEEEECTTSEEEEEES-SCSCEEEEEGGGE
T ss_pred EEEEEEecCCCeEEEEEC-CCCCEEEecHHHE
Confidence 478999999999999876 3478999998653
No 318
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=95.92 E-value=0.0032 Score=45.44 Aligned_cols=31 Identities=23% Similarity=0.772 Sum_probs=25.0
Q ss_pred CcEEEeC-CCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISK-DDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~-~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|++|+++ .|.+||.++.. .++..|++||...
T Consensus 34 ~i~v~~~~~~~~Ww~g~~~-~~g~~G~fP~~yv 65 (70)
T 1gcq_C 34 IVELTKAEAEHNWWEGRNT-ATNEVGWFPCNRV 65 (70)
T ss_dssp EEEEEECCTTCSEEEEEET-TTTEEEEEEGGGE
T ss_pred EEEEEeCCCCCCCeEEEeC-CCCCEeEeehHHe
Confidence 5789999 68999999864 3578999998653
No 319
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.91 E-value=0.0062 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
--|+|+|++|||||||+++|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 320
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.91 E-value=0.0044 Score=58.54 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..|.|+||+|||||||++.|.....
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4799999999999999999977653
No 321
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.90 E-value=0.0065 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||+++|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999865
No 322
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.90 E-value=0.0056 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.492 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||.++|....
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998653
No 323
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.90 E-value=0.0065 Score=50.09 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 324
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.90 E-value=0.0032 Score=55.59 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..++|+||+|+|||||++.|...
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3578999999999999999998865
No 325
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.89 E-value=0.0065 Score=58.36 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=29.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD 135 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~ 135 (330)
...|+|+|.+|||||||.++|..... .....|.||+.|..|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~--~v~~~p~tTi~p~~g 42 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTG 42 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceECceEE
Confidence 35699999999999999999997542 344567889888765
No 326
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=95.89 E-value=0.003 Score=44.03 Aligned_cols=29 Identities=21% Similarity=0.706 Sum_probs=24.3
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+++|++++|++||.++. ++..|++|+...
T Consensus 28 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 56 (59)
T 2g6f_X 28 VIHVTRVEEGGWWEGTH---NGRTGWFPSNYV 56 (59)
T ss_dssp EEEEEEECTTSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEEeHHHE
Confidence 47899999999999986 467899998653
No 327
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=95.89 E-value=0.0038 Score=44.99 Aligned_cols=31 Identities=16% Similarity=0.374 Sum_probs=25.8
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|.|++++|++||+++... ++..|++|+...
T Consensus 27 ~i~v~~~~~~~W~~g~~~~-~g~~G~~P~~yv 57 (69)
T 1ruw_A 27 IVFISRDEPSGWSLAKLLD-GSKEGWVPTAYM 57 (69)
T ss_dssp EEEEEEECTTSEEEEEETT-SSCEEEEEGGGE
T ss_pred EEEEEEecCCCeEEEEECC-CCCEEEEehHHe
Confidence 4789999999999998753 478999998764
No 328
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=95.89 E-value=0.003 Score=43.90 Aligned_cols=29 Identities=21% Similarity=0.552 Sum_probs=24.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
++.|+++.|++||.++. ++..|++|+...
T Consensus 26 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 54 (58)
T 1zx6_A 26 KVQLLEKLSPEWYKGSC---NGRTGIFPANYV 54 (58)
T ss_dssp EEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEeeHHHE
Confidence 47899999999999996 568999998653
No 329
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=95.88 E-value=0.0031 Score=44.16 Aligned_cols=29 Identities=34% Similarity=0.846 Sum_probs=24.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+++|++++|++||.++. ++..|++|+...
T Consensus 29 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 57 (60)
T 2xmf_A 29 IIDIIKEDPSGWWTGRL---RGKQGLFPNNYV 57 (60)
T ss_dssp EEEEEEECTTSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCEEEEEcHHHE
Confidence 47899999999999997 468999998653
No 330
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.87 E-value=0.0054 Score=56.04 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=24.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr 133 (330)
..++|+|.+|||||||+++|...... -...+|+||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-~~~~~~g~T~~~~ 138 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-SVGAQPGITKGIQ 138 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-ccCCCCCCccceE
Confidence 47999999999999999999976532 2456778887653
No 331
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.87 E-value=0.0073 Score=54.56 Aligned_cols=53 Identities=25% Similarity=0.297 Sum_probs=32.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc--ccCCeeEEEecc
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD--EENGRAYYFISH 147 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~--E~~G~dy~fvs~ 147 (330)
..|+|+|.+|+|||||.++|..... .+....+.||...... +.+|..+.++|.
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~liDT 91 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQV-VRVSPFQAEGLRPVMVSRTMGGFTINIIDT 91 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCC-SCCCSSCC-CCCCEEEEEEETTEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcceeeEEEEEEECCeeEEEEEC
Confidence 4689999999999999999997542 1333344444433222 234444455543
No 332
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=95.86 E-value=0.0043 Score=45.07 Aligned_cols=31 Identities=39% Similarity=0.860 Sum_probs=25.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|+|+.+.|++||+++.. .++..|++|+...
T Consensus 39 ~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~yv 69 (73)
T 3h0h_A 39 KFQILNSSEGDWWEARSL-TTGETGYIPSNYV 69 (73)
T ss_dssp EEEEEECSSSSEEEEEET-TTCCEEEEEGGGE
T ss_pred EEEEEEecCCCeEEEEEC-CCCCEEEEEHHHe
Confidence 478999999999999975 3467999998653
No 333
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.86 E-value=0.0045 Score=57.51 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||+|+|||||.+.|....+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3568999999999999999998876543
No 334
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.86 E-value=0.0076 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||.++|...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 335
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.85 E-value=0.0064 Score=51.78 Aligned_cols=22 Identities=14% Similarity=0.404 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 336
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.85 E-value=0.0066 Score=51.90 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 337
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=95.85 E-value=0.0036 Score=44.33 Aligned_cols=29 Identities=21% Similarity=0.706 Sum_probs=24.6
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|+.+.|++||.++. ++..|++|+...
T Consensus 30 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 58 (64)
T 2ak5_A 30 VIHVTRVEEGGWWEGTH---NGRTGWFPSNYV 58 (64)
T ss_dssp EEEEEECCTTSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEeEecCCCEEEEEE---CCCEEEEehHHe
Confidence 57899999999999986 467999998654
No 338
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=95.84 E-value=0.0052 Score=58.86 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||.+.|+...+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 467999999999999999999886654
No 339
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.012 Score=58.34 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+|=|+|.||+|+|||.|++.|+.+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~ 267 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRT 267 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 45789999999999999999999764
No 340
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.83 E-value=0.0058 Score=52.45 Aligned_cols=24 Identities=33% Similarity=0.578 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++++|.||+|+|||+|++.|....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998764
No 341
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.82 E-value=0.0053 Score=58.87 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||.+.|+...+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 567999999999999999999887653
No 342
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=95.82 E-value=0.0046 Score=44.70 Aligned_cols=29 Identities=24% Similarity=0.712 Sum_probs=23.2
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|++++ ++||+++.. ++..|+|||...
T Consensus 28 ~i~vl~~~-~~Ww~~~~~--~g~~G~~Psnyv 56 (67)
T 2b86_A 28 RLWLLDDS-KTWWRVRNA--ANRTGYVPSNYV 56 (67)
T ss_dssp EEEEEECS-SSSCEEECT--TSCEEECCCCSE
T ss_pred EEEEEecC-CCeEEEEeC--CCCEEEeChHHE
Confidence 57899985 699999854 478999999654
No 343
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.80 E-value=0.0057 Score=52.21 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.-|+|+|++|||||||+++|....
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 479999999999999999998653
No 344
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.80 E-value=0.0046 Score=53.11 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||.++|...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999753
No 345
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.80 E-value=0.0054 Score=58.87 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||.+.|+...+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 567999999999999999999887654
No 346
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.79 E-value=0.0058 Score=54.68 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
++.++|+||+|+|||+|++.|.....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999987653
No 347
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.79 E-value=0.012 Score=58.50 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
++.|+|+||+|+|||+|++.|....
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999998753
No 348
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=95.79 E-value=0.0048 Score=44.76 Aligned_cols=31 Identities=32% Similarity=0.778 Sum_probs=24.4
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCc---eeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSA---GLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~---GlIPS~~~ 32 (330)
||+| +++|++||.++....++.. |++|+...
T Consensus 34 ~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv 67 (72)
T 2kgt_A 34 VFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYL 67 (72)
T ss_dssp CEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTS
T ss_pred EEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHE
Confidence 5788 8889999999985333567 99999654
No 349
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.78 E-value=0.043 Score=48.58 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=27.3
Q ss_pred hhhhccceeeEEEEcCCHHHHHHHHHHHHHH
Q psy933 286 LKSAYEHFFDLTVVNNDIEETIGILEKAIEE 316 (330)
Q Consensus 286 ~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~~ 316 (330)
.|..|++.||.+|+|||+++|+.+|+++|..
T Consensus 167 ~e~~~~~~~d~~i~Nd~l~~a~~~l~~ii~~ 197 (219)
T 1s96_A 167 AEMSHYAEYDYLIVNDDFDTALTDLKTIIRA 197 (219)
T ss_dssp HHHTTGGGSSEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHhhccCCCEEEECcCHHHHHHHHHHHHHH
Confidence 4556889999999999999999999999853
No 350
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.77 E-value=0.0056 Score=58.97 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||.+.|+...+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 567999999999999999998887654
No 351
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=95.77 E-value=0.004 Score=44.58 Aligned_cols=31 Identities=19% Similarity=0.549 Sum_probs=25.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
++.|+++.|++||.++..+ .+..|++|+...
T Consensus 30 ~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv 60 (67)
T 2o9s_A 30 RITLLRQVDENWYEGRIPG-TSRQGIFPITYV 60 (67)
T ss_dssp EEEEEEECSSSEEEEECTT-SSCEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEECC-CCCEEEEChHHe
Confidence 4789999999999998654 468999998653
No 352
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.76 E-value=0.0047 Score=58.73 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..++|+||+|+|||||++.|...++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 67899999999999999999998765
No 353
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.76 E-value=0.021 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..+.|+|.||+|+|||+|++.|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998764
No 354
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.75 E-value=0.0042 Score=44.65 Aligned_cols=29 Identities=38% Similarity=0.833 Sum_probs=24.6
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|+++.|++||.++. ++..|++|+...
T Consensus 31 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 59 (68)
T 1x2k_A 31 IIYITDMSDTNWWKGTS---KGRTGLIPSNYV 59 (68)
T ss_dssp EEEEEECSCSSEEEEES---SSCEEEEETTTE
T ss_pred EEEEEEcCCCCEEEEEE---CCcEEEEehHHe
Confidence 57899999999999985 568999998664
No 355
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=95.74 E-value=0.0051 Score=45.62 Aligned_cols=32 Identities=22% Similarity=0.627 Sum_probs=26.3
Q ss_pred CcEEEeCCCCCceeEEeCC--CCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDN--VAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~--~~~~~GlIPS~~~ 32 (330)
||+|+.++|++||.++..+ ..+..|++|+...
T Consensus 31 ~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv 64 (80)
T 1ue9_A 31 LILILKKNTSGWWQGELQARGKKRQKGWFPASHV 64 (80)
T ss_dssp EEEEEEECSSSEEEEEECSCCSSCCEEEEETTSE
T ss_pred EEEEEEecCCCcEEEEECCCCCCCcEEEEchHHe
Confidence 5789999999999999863 3368999999664
No 356
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=95.74 E-value=0.0052 Score=43.27 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=24.3
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|++|+++.|++||.++. ++..|++|+...
T Consensus 29 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 57 (62)
T 1k4u_S 29 IILVLSKVNEEWLEGES---KGKVGIFPKVFV 57 (62)
T ss_dssp EEEEEEESSSSCEEEEC---SSCEEEECGGGC
T ss_pred EEEEEEeCCCCEEEEEE---CCcEEEEeHHHE
Confidence 57899999999999984 468999998654
No 357
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.74 E-value=0.0077 Score=51.26 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.-|+|+|++|||||||+++|....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 358
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.74 E-value=0.004 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||.++|...
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 359
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.73 E-value=0.0064 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..++|+||+|+|||||++.|+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998854
No 360
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.73 E-value=0.004 Score=56.54 Aligned_cols=37 Identities=24% Similarity=0.313 Sum_probs=26.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSP 132 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~p 132 (330)
..|+|+|++|||||||.++|..... .....|.+|...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~--~~~~~pg~tv~~ 42 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQ--YVANWPGVTVEK 42 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCE--EEEECTTSCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceEEE
Confidence 3689999999999999999986431 223344445433
No 361
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.73 E-value=0.0081 Score=50.60 Aligned_cols=23 Identities=13% Similarity=0.375 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||+++|...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 362
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.72 E-value=0.0039 Score=45.90 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=24.0
Q ss_pred CcEEEe-CCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIIS-KDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~-~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|++ .+|++||+++. +++.|++||...
T Consensus 38 ~i~v~~~~~~~gWw~g~~---~g~~G~fP~~yv 67 (75)
T 2ege_A 38 VVMVYGPMDDQGFYYGEL---GGHRGLVPAHLL 67 (75)
T ss_dssp EEEEESCCCTTCEEEEES---SSCEEEEETTTE
T ss_pred EEEEeEccCCCCEEEEEE---CCcEEEEChHHe
Confidence 578997 58999999985 568999999764
No 363
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.72 E-value=0.0062 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.++.|+|.||+|+|||+|++.|.....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 347899999999999999999988653
No 364
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.72 E-value=0.0066 Score=51.74 Aligned_cols=27 Identities=19% Similarity=0.517 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..-|+|+|++|||||+|+++|...+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345799999999999999998876543
No 365
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.71 E-value=0.0075 Score=48.94 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999865
No 366
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.017 Score=56.74 Aligned_cols=26 Identities=27% Similarity=0.502 Sum_probs=23.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.++=|+|.||+|+|||.|++.|+.+.
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCCceECCCCchHHHHHHHHHHHh
Confidence 35789999999999999999999874
No 367
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.71 E-value=0.0051 Score=58.75 Aligned_cols=27 Identities=19% Similarity=0.332 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||||||||||.+.|+...+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 567999999999999999998886643
No 368
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0077 Score=52.96 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
No 369
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.70 E-value=0.0061 Score=57.82 Aligned_cols=39 Identities=28% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr 133 (330)
...|+|+|++|||||||.++|....+ .....++||+.+.
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~--~~~~~~~~t~~~~ 205 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKP--EIASYPFTTRGIN 205 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCC--EEECCTTCSSCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCeeecee
Confidence 45899999999999999999987543 2334567776543
No 370
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=95.69 E-value=0.0048 Score=43.91 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=25.1
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+.+.|++||.++.. .++..|++||...
T Consensus 30 ~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv 60 (65)
T 2j05_A 30 MFIVHNELEDGWMWVTNL-RTDEQGLIVEDLV 60 (65)
T ss_dssp EEEEEEECTTSEEEEEET-TTCCEEEEEGGGE
T ss_pred EEEEeEecCCCEEEEEEC-CCCCEEEEEhHHe
Confidence 578999999999999854 3478999998653
No 371
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=95.69 E-value=0.0047 Score=46.57 Aligned_cols=32 Identities=9% Similarity=0.386 Sum_probs=25.7
Q ss_pred CcEEEeCCCCCceeEEeCCC---CCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNV---AGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~---~~~~GlIPS~~~ 32 (330)
|+.|+++.|++||+++..+. ++..|++|+...
T Consensus 43 iI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV 77 (83)
T 2ke9_A 43 VITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV 77 (83)
T ss_dssp EEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGE
T ss_pred EEEEEEecCCCeEEEEECCCCCCCCCEEEechHHE
Confidence 57899999999999997532 478999998653
No 372
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.69 E-value=0.0053 Score=57.34 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+||||||+++.|+..++
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999987653
No 373
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.68 E-value=0.0065 Score=50.89 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.-|+|+|++|||||||.++|....
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999998654
No 374
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.67 E-value=0.0051 Score=58.11 Aligned_cols=27 Identities=19% Similarity=0.470 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|+...+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 457899999999999999999988765
No 375
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0084 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||+++|...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 376
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.67 E-value=0.014 Score=57.44 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+..|+|+|.+|+|||||+++|.+..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998764
No 377
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.67 E-value=0.017 Score=56.50 Aligned_cols=25 Identities=16% Similarity=0.456 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+.|+|.||+|+|||+|++.|+...
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999875
No 378
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.65 E-value=0.0081 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=22.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+-++|+||+|+|||||++.|.....
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999988754
No 379
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=95.64 E-value=0.0041 Score=44.99 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=24.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|+.|+++.|++||.++. ++..|++|+...
T Consensus 27 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 55 (68)
T 2ew3_A 27 IITLTNQIDENWYEGMI---HGESGFFPINYV 55 (68)
T ss_dssp EEEEEEESSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEeeHHHE
Confidence 57899999999999986 468999998664
No 380
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.64 E-value=0.0064 Score=58.95 Aligned_cols=28 Identities=18% Similarity=0.356 Sum_probs=23.8
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||||||||||.+.|+...+
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 3568999999999999999998886543
No 381
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=95.64 E-value=0.0062 Score=58.39 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC----C-ccccccccccCCCCcccCCeeEEEecccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD----K-YAYPVPHTTRSPRSDEENGRAYYFISHDE 149 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~----~-f~~~v~~TTR~pr~~E~~G~dy~fvs~~~ 149 (330)
++.|+++|.+|+|||||.|.|...... . -....|+||+.+.....+. ...++|..-
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG 220 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPG 220 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCC
Confidence 467999999999999999999987421 1 2355778888765544322 144554443
No 382
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.63 E-value=0.0079 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999999865
No 383
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.63 E-value=0.006 Score=57.70 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=23.9
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
..+..++|+||+||||||+++.|+..++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999987653
No 384
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.62 E-value=0.0073 Score=55.08 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+.++|.||+|+|||+|++.|.....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999998764
No 385
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=95.62 E-value=0.0025 Score=55.49 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHH-hhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLI-NKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~-~~~p 118 (330)
-|+|+|++|||||||+++|+ ..+.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~~ 41 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEFE 41 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC
Confidence 68999999999999999944 4433
No 386
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.61 E-value=0.0077 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.-|+|+|++|||||||+++|....
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 387
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.60 E-value=0.0071 Score=58.16 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=30.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD 135 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~ 135 (330)
.|+|+|++|||||||.++|....+ .....|.||..|..+
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g 41 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVG 41 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceecccee
Confidence 588999999999999999987743 344456778877655
No 388
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=95.59 E-value=0.003 Score=44.28 Aligned_cols=28 Identities=25% Similarity=0.770 Sum_probs=23.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE 31 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~ 31 (330)
++.|+++.|++||.++. ++..|++|+..
T Consensus 30 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~y 57 (60)
T 2gnc_A 30 SLLLYHRASEDWWEGRH---NGIDGLVPHQY 57 (60)
T ss_dssp EEEEEEEEETTEEEEEE---TTEEEEEEGGG
T ss_pred EEEEEEecCCCEEEEEE---CCeEEEEeHhh
Confidence 47899998899999997 36899999864
No 389
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.59 E-value=0.0067 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.573 Sum_probs=21.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..|+|+|++|||||||+++|....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998653
No 390
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.59 E-value=0.0077 Score=54.49 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.++.++|.||+|+|||+|++.|.....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 457899999999999999999988753
No 391
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.59 E-value=0.008 Score=51.60 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+.++|.||+|+|||+|++.+.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999987653
No 392
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=95.58 E-value=0.0047 Score=43.25 Aligned_cols=29 Identities=17% Similarity=0.546 Sum_probs=24.2
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
++.|+++.|++||.++. ++..|++|+...
T Consensus 28 ~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv 56 (60)
T 1w70_A 28 VIFLLSRINKDWLEGTV---RGATGIFPLSFV 56 (60)
T ss_dssp EEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEeCCCCeEEEEE---CCCEEEechHHE
Confidence 47899999999999985 368999998653
No 393
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.57 E-value=0.0062 Score=55.73 Aligned_cols=26 Identities=19% Similarity=0.578 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..++|+||+|+|||||.+.|....|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~p 55 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLLP 55 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCC
Confidence 67999999999999999998876544
No 394
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=95.57 E-value=0.0012 Score=48.97 Aligned_cols=30 Identities=23% Similarity=0.706 Sum_probs=24.8
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|++++|.+||+++. .++..|++|+...
T Consensus 44 ~i~v~~~~~~~Ww~~~~--~~g~~G~~P~~yv 73 (77)
T 1awj_A 44 EYYLLDSSEIHWWRVQD--KNGHEGYAPSSYL 73 (77)
T ss_dssp CCSCCCTTSSSBCCCCC--SSSCCCCCBSTTC
T ss_pred EEEEEEecCCCCEEEEE--CCCCEEEEehHHE
Confidence 57889999999999975 3578999999764
No 395
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.57 E-value=0.0041 Score=45.13 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=24.8
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+++.|++||.++.. .++..|++|+...
T Consensus 32 ~i~v~~~~~~~W~~g~~~-~~g~~G~~P~~yv 62 (71)
T 2gqi_A 32 MFIVHNELEDGWMWVTNL-RTDEQGLIVEDLV 62 (71)
T ss_dssp BCCCCEECSSSCEEEECT-TTCCEEEECTTSE
T ss_pred EEEEEEecCCCEEEEEEC-CCCCEEEeeHHHE
Confidence 577888999999999843 3578999998654
No 396
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=95.57 E-value=0.004 Score=44.81 Aligned_cols=32 Identities=22% Similarity=0.673 Sum_probs=25.9
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhHHH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~~e 34 (330)
++.|++++|++||+++. .++..|++|+...++
T Consensus 30 ~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~ 61 (69)
T 4esr_A 30 IIRVFFKDNEDWWYGSI--GKGQEGYFPANHVAS 61 (69)
T ss_dssp EEEEEEECSSSEEEEEE--ETTEEEEEEGGGEEE
T ss_pred EEEEEEecCCCeEEEEe--CCCCEEEEchHHeEE
Confidence 47899999999999986 246889999976543
No 397
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.55 E-value=0.006 Score=51.84 Aligned_cols=22 Identities=18% Similarity=0.665 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999754
No 398
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=95.55 E-value=0.0055 Score=42.91 Aligned_cols=29 Identities=21% Similarity=0.825 Sum_probs=24.2
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
++.|+++.|++||+++. +++.|++|+...
T Consensus 30 ~i~v~~~~~~~Ww~~~~---~g~~G~~P~~yv 58 (62)
T 3ngp_A 30 ILTLLNSTNKDWWKIEV---NGRQGFVPAAYL 58 (62)
T ss_dssp EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEeEecCCCeEEEEE---CCEEEEEEHHHE
Confidence 47899999999999985 468899998653
No 399
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=95.55 E-value=0.0059 Score=42.95 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=25.1
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|+.|+++.|++||.++.. .++..|++|+...
T Consensus 27 ~i~v~~~~~~~W~~g~~~-~~g~~G~fP~~yv 57 (62)
T 2fpe_A 27 PLLVELQAEDYWYEAYNM-RTGARGVFPAYYA 57 (62)
T ss_dssp EEEEEEECTTSEEEEEET-TTCCEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEEC-CCCCEEEechHHE
Confidence 478999999999999863 2578999998653
No 400
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.54 E-value=0.008 Score=55.51 Aligned_cols=27 Identities=19% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.++.|+|.||+|+|||+|++.|.....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 357899999999999999999998754
No 401
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=95.54 E-value=0.0069 Score=45.09 Aligned_cols=31 Identities=42% Similarity=0.871 Sum_probs=25.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|.|++++|++||.++... ++..|++|+...
T Consensus 29 ~i~vl~~~~~~Ww~g~~~~-~g~~G~~P~~yv 59 (79)
T 3cqt_A 29 KFQILNSSEGDWWEARSLT-TGETGYIPSIYL 59 (79)
T ss_dssp EEEEEECTTSSEEEEEETT-TCCEEEEEGGGE
T ss_pred EEEEEEecCCCeEEEEECC-CCCEEEeehHHe
Confidence 4789999999999999742 568999998764
No 402
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=95.53 E-value=0.0049 Score=44.43 Aligned_cols=31 Identities=19% Similarity=0.549 Sum_probs=25.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+.+.|++||+++..+ .+..|++|+...
T Consensus 31 ~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv 61 (70)
T 2ecz_A 31 RITLLRQVDENWYEGRIPG-TSRQGIFPITYV 61 (70)
T ss_dssp BCEEEEEEETTEEEEEETT-TTEEEEECTTTE
T ss_pred EEEEEEecCCCeEEEEECC-CCCEEEEchHHE
Confidence 5789999899999998764 468999998654
No 403
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.53 E-value=0.017 Score=55.26 Aligned_cols=25 Identities=20% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+.|+|.||+|+|||+|++.+....
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh
Confidence 4799999999999999999998764
No 404
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=95.53 E-value=0.0044 Score=43.99 Aligned_cols=29 Identities=14% Similarity=0.736 Sum_probs=24.4
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|+.|+++.|++||+++. ++..|++|+...
T Consensus 13 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 41 (63)
T 1tuc_A 13 ILTLLNSTNKDWWKVEV---NDRQGFVPAAYV 41 (63)
T ss_dssp EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEEeHHHE
Confidence 57899999999999974 457899998764
No 405
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=95.53 E-value=0.0054 Score=43.24 Aligned_cols=29 Identities=31% Similarity=0.810 Sum_probs=24.1
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+++.|++||+++.. +..|++|+...
T Consensus 29 ~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv 57 (62)
T 1uj0_A 29 LITVLDDSDANWWQGENH---RGTGLFPSNFV 57 (62)
T ss_dssp EEEEEECCSSSEEEEEET---TEEEEEEGGGE
T ss_pred EEEEEEeCCCCEEEEEEC---CCEEEechhHE
Confidence 578999999999999875 35899998654
No 406
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.50 E-value=0.0061 Score=45.88 Aligned_cols=30 Identities=23% Similarity=0.757 Sum_probs=25.1
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|.|++++|++||+++.. ++..|+||+...
T Consensus 43 ~i~v~~~~~~~Ww~~~~~--~g~~G~~P~~yv 72 (85)
T 2yuq_A 43 EYCLLDSSEIHWWRVQDR--NGHEGYVPSSYL 72 (85)
T ss_dssp EEEEEECCSSSEEEEECS--SSCEEEEETTTC
T ss_pred EEEEEEecCCCeEEEEEC--CCCEEEEehHHe
Confidence 578999999999999852 468999999765
No 407
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=95.50 E-value=0.0078 Score=41.85 Aligned_cols=31 Identities=23% Similarity=0.647 Sum_probs=24.6
Q ss_pred CcEEEeC-CCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISK-DDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~-~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
++.|+++ ++++||.++.. .++..|++|+...
T Consensus 26 ~i~v~~~~~~~~Ww~g~~~-~~g~~G~~P~~yv 57 (60)
T 2v1q_A 26 KVYILDDKKSKDWWMCQLV-DSGKSGLVPAQFI 57 (60)
T ss_dssp EEEEEESSSCSSEEEEEET-TTCCEEEEEGGGE
T ss_pred EEEEEeCCCCCCCEEEEEC-CCCCEEEEEHHHE
Confidence 4788998 59999999874 3478999998653
No 408
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.50 E-value=0.0063 Score=56.93 Aligned_cols=24 Identities=21% Similarity=0.409 Sum_probs=21.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.++|+|++|+|||||++.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 478999999999999999999765
No 409
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.50 E-value=0.0087 Score=49.07 Aligned_cols=25 Identities=28% Similarity=0.171 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..+|+|.||+|+||++|++.|....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999987654
No 410
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.48 E-value=0.0088 Score=53.13 Aligned_cols=27 Identities=22% Similarity=0.493 Sum_probs=24.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
++.|+|.|+.||||||+++.|.+.+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 457999999999999999999998753
No 411
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.48 E-value=0.0075 Score=51.66 Aligned_cols=23 Identities=17% Similarity=0.524 Sum_probs=20.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
--|+|+|++|||||||+++|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999999854
No 412
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.48 E-value=0.011 Score=50.70 Aligned_cols=23 Identities=13% Similarity=0.355 Sum_probs=21.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
..|+|+|++|||||||.++|...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999865
No 413
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=95.48 E-value=0.0065 Score=43.96 Aligned_cols=31 Identities=32% Similarity=0.812 Sum_probs=25.0
Q ss_pred CcEEEe-CCCCCceeEEeCCCCCCceeeCChhHH
Q psy933 1 MFQIIS-KDDHNWWQARKDNVAGSAGLIPSPELQ 33 (330)
Q Consensus 1 iL~v~~-~~D~~WWQA~~~~~~~~~GlIPS~~~~ 33 (330)
+|+|++ ..|++||+++.. ++..|++|+...+
T Consensus 35 ~i~v~~~~~~~~Ww~g~~~--~g~~G~~P~~yv~ 66 (71)
T 1csk_A 35 VLTIVAVTKDPNWYKAKNK--VGREGIIPANYVQ 66 (71)
T ss_dssp EEEEEEECSSTTEEEEECT--TSCEEEEETTSEE
T ss_pred EEEEeECCCCCCCEEEEeC--CCCEEEEehHHeE
Confidence 478898 889999999843 5789999997653
No 414
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.48 E-value=0.0064 Score=59.08 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=24.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDE 136 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E 136 (330)
+..|+|+|++|||||||.++|..... -....|.||..|..|.
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~ 63 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESR 63 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC---------------CCSEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEE
Confidence 35699999999999999999986532 3445678888886653
No 415
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=95.47 E-value=0.0078 Score=44.07 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.1
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|+.|+++.|.+||+++. ++..|++||...
T Consensus 35 ~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv 63 (73)
T 2ebp_A 35 IIDIISKPPMGTWMGLL---NNKVGTFKFIYV 63 (73)
T ss_dssp EEEEEECCSSSCEEEEC---SSCEEEECSTTE
T ss_pred EEEEEEeCCCCeEEEEE---CCCEEEEeHHHE
Confidence 57899999999999975 357899999653
No 416
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=95.47 E-value=0.0061 Score=43.65 Aligned_cols=29 Identities=24% Similarity=0.559 Sum_probs=24.3
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|+.|+++.|++||.++. ++..|++|+...
T Consensus 25 ~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv 53 (65)
T 2nwm_A 25 IVYIHKEVDKNWLEGEH---HGRLGIFPANYV 53 (65)
T ss_dssp EEEEEECCTTTCEEEEE---TTEEEEECGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEEehhhE
Confidence 47899999999999984 468899998654
No 417
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.47 E-value=0.005 Score=59.13 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+||||||+++.|+..++
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456899999999999999999987654
No 418
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.46 E-value=0.009 Score=51.51 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~ 115 (330)
.+..++|+||+|+|||||+..|+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999986
No 419
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=95.46 E-value=0.0033 Score=69.67 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..++|+||+|+|||||++.|...++
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 567999999999999999999887654
No 420
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.45 E-value=0.0084 Score=49.54 Aligned_cols=22 Identities=18% Similarity=0.477 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 421
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.45 E-value=0.0088 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.++|.||+|+|||+|++.+.+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 459999999999999999998763
No 422
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=95.45 E-value=0.0051 Score=44.18 Aligned_cols=29 Identities=14% Similarity=0.396 Sum_probs=24.2
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|++|++++|++||++.. ++..|++||...
T Consensus 32 ~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv 60 (67)
T 2eyx_A 32 LVKVTKINVSGQWEGEC---NGKRGHFPFTHV 60 (67)
T ss_dssp EEEEEEECTTSEEEEEE---TTEEEEEEGGGB
T ss_pred EEEEEEecCCCEEEEEE---CCCEEEEehHhE
Confidence 57899999999999975 368899998653
No 423
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=95.44 E-value=0.0035 Score=44.98 Aligned_cols=29 Identities=24% Similarity=0.596 Sum_probs=24.1
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|+.|+++.|++||.++. ++..|++||...
T Consensus 25 ~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv 53 (65)
T 2fei_A 25 IIDINEEVEEGWWSGTL---NNKLGLFPSNFV 53 (65)
T ss_dssp EEECCCCSSSSEEEEES---SSCEEEEETTTS
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEecHHHE
Confidence 46788999999999984 468999999654
No 424
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.44 E-value=0.0084 Score=54.93 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
-++|+||+|+|||||++.|+....
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcHHHHHHHHHHHcC
Confidence 499999999999999999998754
No 425
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.43 E-value=0.019 Score=60.61 Aligned_cols=64 Identities=22% Similarity=0.431 Sum_probs=42.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCcccCCeeEEEecccchhhHHhccceeeEEeecCcccc
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG 171 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~f~~~i~~~~fle~~~~~g~~YG 171 (330)
.++-|+|.||+|+|||+|++.|+.+.. ..++.|+-.++. +.++|
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg---------------------~~~~~v~~~~l~---------------sk~~g 280 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETG---------------------AFFFLINGPEIM---------------SKLAG 280 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTT---------------------CEEEEEEHHHHH---------------SSCTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC---------------------CeEEEEEhHHhh---------------cccch
Confidence 456799999999999999999987542 234444433331 34567
Q ss_pred ccHHHHHHHHHh---CCeEEEEe
Q psy933 172 TKLETIRRIHQE---GKIAILDV 191 (330)
Q Consensus 172 ts~~~i~~v~~~---gk~~vldv 191 (330)
.+...++++++. ...||+-+
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfI 303 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFI 303 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCeEEEE
Confidence 777777776653 45666665
No 426
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=95.42 E-value=0.0067 Score=42.33 Aligned_cols=28 Identities=29% Similarity=0.845 Sum_probs=23.3
Q ss_pred CcEEEeCC--CCCceeEEeCCCCCCceeeCChh
Q psy933 1 MFQIISKD--DHNWWQARKDNVAGSAGLIPSPE 31 (330)
Q Consensus 1 iL~v~~~~--D~~WWQA~~~~~~~~~GlIPS~~ 31 (330)
+++|+++. +++||.++. ++..|++|+..
T Consensus 27 ~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~y 56 (60)
T 1oot_A 27 VITILKKSDSQNDWWTGRV---NGREGIFPANY 56 (60)
T ss_dssp EEEEEECCSCTTSEEEEEE---TTEEEEEEGGG
T ss_pred EEEEEEeCCCCCCeEEEEE---CCEEEEEeHHH
Confidence 47888887 789999987 46899999865
No 427
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=95.41 E-value=0.0082 Score=42.20 Aligned_cols=30 Identities=27% Similarity=0.719 Sum_probs=23.4
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|.|++++| +||+++... ++..|++|+...
T Consensus 30 ~i~v~~~~~-~Ww~g~~~~-~g~~G~~P~~yv 59 (62)
T 2iim_A 30 QLRILEQSG-EWWKAQSLT-TGQEGFIPFNFV 59 (62)
T ss_dssp EEEEEECCS-SEEEEEETT-TCCEEEEEGGGE
T ss_pred EEEEEEcCC-CEEEEEECC-CCCEEEEEHHHE
Confidence 478899875 999998642 468999998653
No 428
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=95.41 E-value=0.14 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|.+|+|||||.++|+..
T Consensus 35 ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 35 SFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp EEEEESCGGGTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6899999999999999999866
No 429
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.41 E-value=0.0077 Score=57.71 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=37.8
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC----CCCccccccccccCCCCcccCCeeEEEecccc
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF----PDKYAYPVPHTTRSPRSDEENGRAYYFISHDE 149 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~----p~~f~~~v~~TTR~pr~~E~~G~dy~fvs~~~ 149 (330)
++.|+++|++|+|||||.|.|.... ........|.||+.+.....+. ...++|..-
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG 221 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES-GATLYDTPG 221 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST-TCEEEECCS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC-CeEEEeCCC
Confidence 4679999999999999999999861 1123456778888765443321 244554443
No 430
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=95.41 E-value=0.0092 Score=41.22 Aligned_cols=30 Identities=23% Similarity=0.665 Sum_probs=24.4
Q ss_pred CcEEEeCCC-CCceeEEeCCCCCCceeeCChh
Q psy933 1 MFQIISKDD-HNWWQARKDNVAGSAGLIPSPE 31 (330)
Q Consensus 1 iL~v~~~~D-~~WWQA~~~~~~~~~GlIPS~~ 31 (330)
++.|+.++| ++||.++.. .++..|++|+..
T Consensus 25 ~i~v~~~~~~~~W~~g~~~-~~g~~G~~P~~y 55 (58)
T 1zuu_A 25 KISLVARDTGSGWTKINND-TTGETGLVPTTY 55 (58)
T ss_dssp CEEEEECCSSSSEEEEEET-TTTEEEEEEGGG
T ss_pred EEEEeEcCCCCCCEEEEEC-CCCCEEEEEHHH
Confidence 578999987 899999874 246789999864
No 431
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.40 E-value=0.0077 Score=43.28 Aligned_cols=29 Identities=14% Similarity=0.693 Sum_probs=24.3
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|+.+.|++||.++. ++..|++|+...
T Consensus 31 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 59 (68)
T 2dl4_A 31 IITLLEDSNEDWWKGKI---QDRIGFFPANFV 59 (68)
T ss_dssp EEEEEECCCSSEEEEEC---SSCEEEEETTTE
T ss_pred EEEEEEeCCCCEEEEEE---CCcEEEEehHHe
Confidence 57899999999999984 458999998654
No 432
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=95.40 E-value=0.0082 Score=46.38 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=25.0
Q ss_pred CcEEE-eCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQII-SKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~-~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+ .++|++||+++.. ++..|++|+...
T Consensus 47 ~i~v~~~~~~~gWw~g~~~--~g~~G~~Psnyv 77 (96)
T 1wie_A 47 YLYVYGDMDEDGFYEGELL--DGQRGLVPSNFV 77 (96)
T ss_dssp EEEEESSCCSSSCCEEEET--TCCBCBCCTTSE
T ss_pred EEEEeEecCCCCEEEEEEC--CCCEEEEchHHE
Confidence 57899 8899999999963 368999999765
No 433
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.40 E-value=0.011 Score=53.63 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=22.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+-++|+||+|+|||||++.|.....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECCCcChHHHHHHHHHHHcC
Confidence 4599999999999999999988764
No 434
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=95.40 E-value=0.0051 Score=44.90 Aligned_cols=29 Identities=14% Similarity=0.736 Sum_probs=24.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|++|++++|++||.++. ++..|++|+...
T Consensus 23 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 51 (73)
T 2kxd_A 23 ILTLLNSTNKDWWKVEV---NDRQGFVPAAYV 51 (73)
T ss_dssp EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCCEEEEehHHe
Confidence 57899999999999974 457899998764
No 435
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.0056 Score=44.90 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=25.4
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|.|+++.|++||+++.. .++..|++|+...
T Consensus 29 ~i~v~~~~~~gWw~g~~~-~~g~~G~~P~~yv 59 (73)
T 2lcs_A 29 IVFISYKHGQGWLVAENE-SGSKTGLVPEEFV 59 (73)
T ss_dssp EEEEEEEETTTEEEEECT-TSSCEEEEESTTE
T ss_pred EEEEEEEcCCCEEEEEEC-CCCCEEEeeHHHE
Confidence 478999999999999865 2478999999764
No 436
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.38 E-value=0.011 Score=49.38 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=20.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
--|+|+|++|||||||.++|...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 437
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=95.37 E-value=0.0044 Score=43.83 Aligned_cols=32 Identities=13% Similarity=0.598 Sum_probs=25.3
Q ss_pred CcEEEeCCCCCceeEEeCC---CC--CCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDN---VA--GSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~---~~--~~~GlIPS~~~ 32 (330)
+|.|+++.|++||.++... .. +..|++|+...
T Consensus 25 ~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv 61 (65)
T 2oaw_A 25 ILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61 (65)
T ss_dssp EEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGE
T ss_pred EEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHe
Confidence 5789999999999998751 11 78999998653
No 438
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.37 E-value=0.011 Score=49.92 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
...+|+||+|+|||||++.|.-..
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 389999999999999999987654
No 439
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.37 E-value=0.0099 Score=52.09 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+..++|+||+|+|||||+..|+..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999999999874
No 440
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.37 E-value=0.0091 Score=50.96 Aligned_cols=38 Identities=24% Similarity=0.211 Sum_probs=23.5
Q ss_pred ccccchhhhhhhccceeeEEEEcCCHHHHHHHHHHHHH
Q psy933 278 WLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE 315 (330)
Q Consensus 278 w~~~~~~~~e~~y~h~fd~~ivn~~~~~~~~~l~~~~~ 315 (330)
++......|+..|+++||.+|+|||++.|+.+|.++|.
T Consensus 146 rl~~~~~~~~~~~~~~~d~vi~nd~~~~a~~~l~~~i~ 183 (186)
T 3a00_A 146 RLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDFIF 183 (186)
T ss_dssp -------------CCCCSEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccCCcEEEECcCHHHHHHHHHHHHH
Confidence 44444445666667999999999999999999998874
No 441
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=95.36 E-value=0.0098 Score=55.25 Aligned_cols=37 Identities=16% Similarity=0.422 Sum_probs=26.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCCCccccccccccC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS 131 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~ 131 (330)
.-|+|+|++|||||+|.++|..... .+....+.+|+.
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~-~~~~~~~~~Ti~ 40 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYS-AFDTRRLGATID 40 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCC-TGGGGGCCCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CccccCcCCccc
Confidence 4689999999999999999987643 244334445543
No 442
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.36 E-value=0.0091 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+.|+|+|++|||||||+++|+...
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999764
No 443
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.36 E-value=0.011 Score=50.10 Aligned_cols=23 Identities=17% Similarity=0.556 Sum_probs=20.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||+++|...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999865
No 444
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=95.36 E-value=0.0069 Score=42.86 Aligned_cols=29 Identities=28% Similarity=0.611 Sum_probs=24.1
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|.|+++.|++||.++. ++..|++|+...
T Consensus 33 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 61 (65)
T 3ulr_B 33 IITNIEMIDDGWWRGVC---KGRYGLFPANYV 61 (65)
T ss_dssp EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEEehHHe
Confidence 47899999999999985 467899998653
No 445
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=95.36 E-value=0.0046 Score=42.89 Aligned_cols=31 Identities=23% Similarity=0.468 Sum_probs=24.9
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
++.|+++.+++||.++.. .++..|++|+...
T Consensus 25 ~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv 55 (59)
T 1yn8_A 25 IVFISYKHGQGWLVAENE-SGSKTGLVPEEFV 55 (59)
T ss_dssp EEEEEEEEETTEEEEECT-TSSCEEEEEGGGE
T ss_pred EEEEEEcCCCCeEEEEEC-CCCCEEEEehHHe
Confidence 478899999999999864 2468999998653
No 446
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.35 E-value=0.0063 Score=51.36 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=21.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
....|+|+|++|||||||+++|...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999854
No 447
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=95.35 E-value=0.51 Score=45.22 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=22.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
-.|+++|++|+|||||.++|.....+
T Consensus 9 ~~I~vvG~~~~GKSTLi~~L~~~~~~ 34 (403)
T 3sjy_A 9 VNIGVVGHVDHGKTTLVQAITGIWTS 34 (403)
T ss_dssp CEEEEECSTTSSHHHHHHHHHSCCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcccc
Confidence 47999999999999999999875443
No 448
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.013 Score=49.17 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
.-|+|+|++|||||||.++|...
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999854
No 449
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=95.34 E-value=0.0036 Score=43.77 Aligned_cols=29 Identities=28% Similarity=0.910 Sum_probs=23.4
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
++.|+++ |++||+++.. ++..|++|+...
T Consensus 25 ~i~v~~~-~~~Ww~~~~~--~g~~G~~P~~yv 53 (60)
T 1i07_A 25 VLEILDD-RRQWWKVRNA--SGDSGFVPNNIL 53 (60)
T ss_dssp EEEECGG-GCCEEEEECT--TSCEEEEEGGGE
T ss_pred EEEEEEc-CCCeEEEEEC--CCCEEEEEHHHe
Confidence 4678888 8999999854 378999998654
No 450
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=95.33 E-value=0.0065 Score=44.07 Aligned_cols=29 Identities=31% Similarity=0.807 Sum_probs=24.1
Q ss_pred CcEEEeCC--CCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKD--DHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~--D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|++++ |++||.++. ++..|++|+...
T Consensus 26 ~i~vl~~~~~~~gWw~g~~---~g~~G~~P~~yV 56 (69)
T 2ydl_A 26 IVTLINKDCIDVGWWEGEL---NGRRGVFPDNFV 56 (69)
T ss_dssp EEEEEESCCSSTTEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEcCCCCCCEEEEEE---CCcEEEecHHHE
Confidence 47899986 899999986 468899998664
No 451
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.31 E-value=0.0092 Score=50.12 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 452
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.29 E-value=0.011 Score=42.46 Aligned_cols=31 Identities=13% Similarity=0.339 Sum_probs=25.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|+|+.+.|++||.++.. .++..|++|+...
T Consensus 31 ~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv 61 (70)
T 2ct3_A 31 RVDVMQQCDDGWFVGVSR-RTQKFGTFPGNYV 61 (70)
T ss_dssp EEEEEEECSSSCEEEEES-SSCCEEEECTTTE
T ss_pred EEEEEEECCCCEEEEEEC-CCCCEEEechHHe
Confidence 478999999999999875 2478999998654
No 453
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.28 E-value=0.0099 Score=49.18 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhhC
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
-|+|+|++|||||||.++|....
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999998753
No 454
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.27 E-value=0.0083 Score=49.77 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||+|+++|...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 455
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.0055 Score=41.85 Aligned_cols=28 Identities=29% Similarity=0.575 Sum_probs=23.3
Q ss_pred CcEEEeCCC-CCceeEEeCCCCCCceeeCChh
Q psy933 1 MFQIISKDD-HNWWQARKDNVAGSAGLIPSPE 31 (330)
Q Consensus 1 iL~v~~~~D-~~WWQA~~~~~~~~~GlIPS~~ 31 (330)
|+.|+.++| ++||.++. ++..|++|+..
T Consensus 24 ~i~v~~~~~~~~W~~g~~---~g~~G~~P~~y 52 (54)
T 2a28_A 24 IITVIRGDDGSGWTYGEC---DGLKGLFPTSY 52 (54)
T ss_dssp EEEEEECCCSSSEEEEEE---TTEEEEEEGGG
T ss_pred EEEEEEecCCCCEEEEEE---CCeEEEeeHHH
Confidence 478899986 79999997 56889999864
No 456
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.26 E-value=0.0078 Score=55.97 Aligned_cols=21 Identities=33% Similarity=0.687 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHh
Q psy933 95 TLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~ 115 (330)
-|+|+||+|||||||++.|..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 469999999999999999875
No 457
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.26 E-value=0.01 Score=56.90 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
.+..|+|+||+||||||+++.|+..++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 457999999999999999999987653
No 458
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.26 E-value=0.0054 Score=44.63 Aligned_cols=29 Identities=28% Similarity=0.791 Sum_probs=24.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+.+.|++||.++. ++..|++|+...
T Consensus 33 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 61 (72)
T 2dl8_A 33 SLLLYQRASDDWWEGRH---NGIDGLIPHQYI 61 (72)
T ss_dssp EEEEEEEEETTEEEEEE---TTEEEEECSSSE
T ss_pred EEEEEeecCCCEEEEEE---CCEEEEEchHHe
Confidence 57899998999999997 468999998654
No 459
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.25 E-value=0.0042 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998743
No 460
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.25 E-value=0.0096 Score=50.19 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
--|+|+|++|||||||.++|....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998653
No 461
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.25 E-value=0.0067 Score=54.72 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.7
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
+..|+|.|+.||||||+++.|.+.+.+
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~ 50 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCED 50 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 358999999999999999999988753
No 462
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...
Probab=95.24 E-value=0.0098 Score=44.80 Aligned_cols=31 Identities=39% Similarity=0.775 Sum_probs=25.6
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|.|++++|++||+++.. .++..|++|+...
T Consensus 30 ~i~vl~~~~~~Ww~g~~~-~~g~~G~~P~~yv 60 (84)
T 4ag1_C 30 KFQILEFGPGDWWEARSL-TTGETGYIPSNYV 60 (84)
T ss_dssp EEEEEECCSSSEEEEEET-TTCCEEEEEGGGE
T ss_pred EEEEEEecCCCeEEEEEC-CCCCEEEEehHHe
Confidence 478999999999999975 3467899998664
No 463
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.23 E-value=0.013 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.665 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||+++|...
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999865
No 464
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.23 E-value=0.009 Score=55.36 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
...+++|.||+|+|||+|++.+....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34689999999999999999998764
No 465
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.23 E-value=0.011 Score=51.45 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
+.|+|+|++|||||||+++|+...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999763
No 466
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.23 E-value=0.01 Score=55.62 Aligned_cols=24 Identities=17% Similarity=0.538 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHhhC
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..++|+||+|+|||||++.|+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999998875
No 467
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.22 E-value=0.011 Score=56.88 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 91 FKRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 91 ~~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
..++.++|+||+|+|||||++.|....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356799999999999999999998764
No 468
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.0076 Score=43.52 Aligned_cols=29 Identities=34% Similarity=0.878 Sum_probs=23.0
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|+++ |++||+++.. ++..|++|+...
T Consensus 31 ~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv 59 (70)
T 2vkn_A 31 ILQVSDI-EGRWWKARRA--NGETGIIPSNYV 59 (70)
T ss_dssp EEEEECT-TSSEEEEECT--TSCEEEEEGGGE
T ss_pred EEEEEEc-CCCeEEEEEC--CCCEEEEehHHE
Confidence 4678876 7899999854 578999998664
No 469
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.21 E-value=0.0099 Score=54.01 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFPD 119 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p~ 119 (330)
+.+++|.||+|+|||+|++.|.+....
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999987643
No 470
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=95.20 E-value=0.011 Score=42.64 Aligned_cols=30 Identities=30% Similarity=0.882 Sum_probs=24.6
Q ss_pred CcEEEeC--CCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISK--DDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~--~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+++ .|++||.++.. ++..|++|+...
T Consensus 30 ~i~v~~~~~~~~~Ww~g~~~--~g~~G~~P~~yv 61 (71)
T 1u5s_A 30 TMEVIEKPENDPEWWKCKNA--RGQVGLVPKNYV 61 (71)
T ss_dssp CEEEEECCCTTTCEEEEEET--TTEEEEEETTSE
T ss_pred EEEEEECCCCCCCCEEEEeC--CCCEEEEeHHHE
Confidence 5789999 78999999853 468999999654
No 471
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.19 E-value=0.011 Score=49.12 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhh
Q psy933 95 TLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~ 116 (330)
-|+|+|++|||||||.++|...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
No 472
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=95.19 E-value=0.0073 Score=42.53 Aligned_cols=29 Identities=17% Similarity=0.552 Sum_probs=24.0
Q ss_pred CcEEEeC-CCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISK-DDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~-~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+.+ .|++||.++. ++..|++|+...
T Consensus 25 ~i~v~~~~~~~~Ww~g~~---~g~~G~~P~~yv 54 (62)
T 2j6f_A 25 IIRNVKKLQEEGWLEGEL---NGRRGMFPDNFV 54 (62)
T ss_dssp EEEEEEECSSTTEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCCEEEEEE---CCcEEEechHHE
Confidence 4788888 8999999985 468999998654
No 473
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.19 E-value=0.012 Score=53.94 Aligned_cols=26 Identities=8% Similarity=0.271 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||+|+|||||++.|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999887654
No 474
>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Probab=95.17 E-value=0.0054 Score=46.40 Aligned_cols=32 Identities=22% Similarity=0.533 Sum_probs=24.2
Q ss_pred CcEEEeCC--CCCceeEEeCC-CCCCceeeCChhH
Q psy933 1 MFQIISKD--DHNWWQARKDN-VAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~--D~~WWQA~~~~-~~~~~GlIPS~~~ 32 (330)
+|+|++.. |++||-||... ...+.|||||..+
T Consensus 41 ~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl 75 (82)
T 1u3o_A 41 TVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL 75 (82)
T ss_dssp EEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred EEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence 36788876 69999999843 3456799999664
No 475
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=95.17 E-value=0.0074 Score=43.99 Aligned_cols=29 Identities=21% Similarity=0.597 Sum_probs=24.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|+|+++.|++||.++. ++..|++|+...
T Consensus 37 ~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv 65 (73)
T 3c0c_A 37 LITLTNQIDENWYEGML---HGQSGFFPLSYV 65 (73)
T ss_dssp EEEEEEECSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCCEEEeChHHE
Confidence 47899999999999986 468899998653
No 476
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=95.16 E-value=0.0062 Score=44.72 Aligned_cols=28 Identities=29% Similarity=0.771 Sum_probs=23.2
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChh
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPE 31 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~ 31 (330)
||.|+++.|++||+++.. +..|++|+..
T Consensus 41 ~i~Vl~~~~~gWw~g~~~---g~~G~fP~~y 68 (72)
T 2l0a_A 41 IITVLDDSDPNWWKGETH---QGIGLFPSNF 68 (72)
T ss_dssp EEEEEEEEETTEEEEECS---SCEEECTTCC
T ss_pred EEEEEEecCCCEEEEEEC---CCEEEechhh
Confidence 578999999999999854 4589999864
No 477
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=95.14 E-value=0.0089 Score=57.93 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhhCCCCccccccccccCCCCc
Q psy933 95 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSD 135 (330)
Q Consensus 95 ~ivLvGpsGvGKstL~~~L~~~~p~~f~~~v~~TTR~pr~~ 135 (330)
.|+|+|.+|||||||.++|.... ......|.||+.|..|
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g 40 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVG 40 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceE
Confidence 48899999999999999998654 2344567788877655
No 478
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.14 E-value=0.015 Score=48.17 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
--|+|+|++|||||||.++|...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 479
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.14 E-value=0.01 Score=44.97 Aligned_cols=29 Identities=17% Similarity=0.481 Sum_probs=24.3
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|++++|.+||++.. ++..|++|+...
T Consensus 42 ~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv 70 (88)
T 2dbk_A 42 IVKVTRMNINGQWEGEV---NGRKGLFPFTHV 70 (88)
T ss_dssp EEEEEEECTTSCEEEEC---SSCEEEECTTTE
T ss_pred EEEEEEecCCCEEEEEe---CCCEEEEehHHe
Confidence 57899999999999964 368899999664
No 480
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=95.13 E-value=0.0075 Score=44.83 Aligned_cols=29 Identities=14% Similarity=0.736 Sum_probs=24.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|++++|.+||.++. ++..|++|+...
T Consensus 26 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 54 (80)
T 2pqh_A 26 ILTLLNSTNKDWWKVEV---NDRQGFVPAAYV 54 (80)
T ss_dssp EEEEEECCSSSEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEEehHHe
Confidence 57899999999999987 357899998765
No 481
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.13 E-value=0.013 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+++|+|.||+|+|||++++.|.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 482
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=95.13 E-value=0.01 Score=42.41 Aligned_cols=29 Identities=24% Similarity=0.654 Sum_probs=24.2
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
++.|+.+.|++||.++. ++..|++|+...
T Consensus 31 ~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv 59 (68)
T 2dl3_A 31 IVYIYKQIDQNWYEGEH---HGRVGIFPRTYI 59 (68)
T ss_dssp EEEEEECCSTTEEEEEC---SSCEEEEETTTE
T ss_pred EEEEeEecCCCEEEEEE---CCCEEEEchHHE
Confidence 47899999999999983 468899998654
No 483
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=95.12 E-value=0.009 Score=42.95 Aligned_cols=29 Identities=24% Similarity=0.777 Sum_probs=23.9
Q ss_pred CcEEEeCC---CCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKD---DHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~---D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+++|++++ |++||.++. ++..|++|+...
T Consensus 27 ~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv 58 (69)
T 1wyx_A 27 IMTVLEQDTQGLDGWWLCSL---HGRQGIVPGNRL 58 (69)
T ss_dssp EEEEEETTGGGCTTEEEEEE---TTEEEEEEGGGE
T ss_pred EEEEeECCCCCCCCcEEEEE---CCcEEEechhhE
Confidence 47899998 899999985 467999998654
No 484
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=95.12 E-value=0.012 Score=42.79 Aligned_cols=29 Identities=21% Similarity=0.716 Sum_probs=23.1
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+++ |++||+++.. ++..|++|+...
T Consensus 31 ~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv 59 (72)
T 2jw4_A 31 RLWLLDD-SKSWWRVRNS--MNKTGFVPSNYV 59 (72)
T ss_dssp EEEEEEC-SSSSEEEECT--TSCEEEECTTSC
T ss_pred EEEEEEC-CCCEEEEEEC--CCCEEEEEhhHE
Confidence 4788887 5699999854 478999999764
No 485
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.11 E-value=0.011 Score=56.49 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..|+|+||+||||||+.+.|+...+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccc
Confidence 34899999999999999999887653
No 486
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.09 E-value=0.011 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.1
Q ss_pred CEEEEEcCCCccHHHHHHHHHhh
Q psy933 94 KTLVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 94 r~ivLvGpsGvGKstL~~~L~~~ 116 (330)
--|+|+|++|||||||.++|...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999854
No 487
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.09 E-value=0.0094 Score=44.35 Aligned_cols=29 Identities=17% Similarity=0.691 Sum_probs=24.6
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|++++|++||+++.. +..|++|+...
T Consensus 34 ~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv 62 (81)
T 2ysq_A 34 VIKVLDASNKDWWWGQID---DEEGWFPASFV 62 (81)
T ss_dssp EEEEEECCSSSEEEEECS---SCEEEEEGGGE
T ss_pred EEEEEEEcCcCEEEEEEC---CCEEEechHHE
Confidence 578999999999999853 67999998664
No 488
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.08 E-value=0.011 Score=55.94 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHhhC
Q psy933 92 KRKTLVLLGAHGVGRRHIKNTLINKF 117 (330)
Q Consensus 92 ~~r~ivLvGpsGvGKstL~~~L~~~~ 117 (330)
.+..++|+||+|||||||.+.|....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999998653
No 489
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.07 E-value=0.011 Score=59.52 Aligned_cols=29 Identities=24% Similarity=0.401 Sum_probs=24.6
Q ss_pred CCCCCEEEEEcCCCccHHHHHHHHHhhCC
Q psy933 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFP 118 (330)
Q Consensus 90 ~~~~r~ivLvGpsGvGKstL~~~L~~~~p 118 (330)
+..+..++|+||+|+|||||++.|....+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 44567999999999999999999987653
No 490
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.07 E-value=0.0099 Score=58.31 Aligned_cols=25 Identities=24% Similarity=0.535 Sum_probs=21.7
Q ss_pred CCCE--EEEEcCCCccHHHHHHHHHhh
Q psy933 92 KRKT--LVLLGAHGVGRRHIKNTLINK 116 (330)
Q Consensus 92 ~~r~--ivLvGpsGvGKstL~~~L~~~ 116 (330)
.+.. ++|+||+|+|||||++.|...
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4567 999999999999999999865
No 491
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=95.06 E-value=0.0081 Score=43.78 Aligned_cols=30 Identities=37% Similarity=0.887 Sum_probs=23.6
Q ss_pred CcEEEeCCCC-----CceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDH-----NWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~-----~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|++++|+ +||+++.. ++..|++||...
T Consensus 32 ~i~Vl~~~~~~~~~~gWW~g~~~--~G~~G~~PsnyV 66 (69)
T 1nm7_A 32 LMAILSKKDPLGRDSDWWKVRTK--NGNIGYIPYNYI 66 (69)
T ss_dssp EEEECCSSSSSCCSSSCEEEEET--TTEEEEECGGGE
T ss_pred EEEEEecCCCCCCCCCeeEEEeC--CCCEEEecHHHE
Confidence 4788888864 99999874 367999998653
No 492
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}
Probab=95.06 E-value=0.014 Score=45.69 Aligned_cols=31 Identities=42% Similarity=0.879 Sum_probs=25.9
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|++++|++||+++.. .++..|+||+...
T Consensus 51 ~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~yv 81 (109)
T 2yt6_A 51 RFQIINNTEGDWWEARSI-ATGKSGYIPSNYV 81 (109)
T ss_dssp EEEEEECSCTTCEEEEES-SSCCEEEECTTTE
T ss_pred EEEEEEccCCCcEEEEEC-CCCCEEEechHHc
Confidence 578999999999999874 2468999999765
No 493
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=95.06 E-value=0.013 Score=42.30 Aligned_cols=31 Identities=23% Similarity=0.701 Sum_probs=25.0
Q ss_pred CcEEEeCC-CCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKD-DHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~-D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|+|+.+. +++||.++... ++..|++|+...
T Consensus 30 ~i~v~~~~~~~~Ww~g~~~~-~g~~G~~P~~yv 61 (71)
T 2jt4_A 30 KVYILDDKKSKDWWMCQLVD-SGKSGLVPAQFI 61 (71)
T ss_dssp EEEEEESSSCSSEEEEEETT-TCCEEEEEGGGE
T ss_pred EEEEEECCCCCCCEEEEECC-CCCeEEechHHe
Confidence 47899987 89999998742 468999998664
No 494
>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}
Probab=95.05 E-value=0.016 Score=42.08 Aligned_cols=31 Identities=13% Similarity=0.413 Sum_probs=24.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+|.|+.++ ++||.++....++..|++|+...
T Consensus 35 ~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv 65 (74)
T 2m0y_A 35 TVHILETY-EGWYRGYTLRKKSKKGIFPASYI 65 (74)
T ss_dssp EEEEEEBS-SSCEEEEESSCSSCCEEECGGGE
T ss_pred EEEEEEcC-CCeEEEEECCCCCCEEEEehHHE
Confidence 47888886 78999998655678999998653
No 495
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.05 E-value=0.011 Score=44.72 Aligned_cols=29 Identities=28% Similarity=0.755 Sum_probs=24.5
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|+++.|++||+++.. +..|++|+...
T Consensus 41 ~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv 69 (88)
T 1x2q_A 41 IIIVLDDSDANWWKGENH---RGIGLFPSNFV 69 (88)
T ss_dssp EEEEEECSCSSSEEEEET---TEEEEECGGGE
T ss_pred EEEEEEeCCCCEEEEEEC---CcEEEEehHHE
Confidence 578999999999999875 45899998764
No 496
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=95.04 E-value=0.0097 Score=43.66 Aligned_cols=29 Identities=21% Similarity=0.652 Sum_probs=24.6
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||.|+.+.|.+||.++. ++..|++|+...
T Consensus 34 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 62 (76)
T 1ujy_A 34 IIYVTRVEEGGWWEGTL---NGRTGWFPSNYV 62 (76)
T ss_dssp CEEESSCCSSSCEEEEE---TTEEEEECTTTS
T ss_pred EEEEEEecCCCEEEEEE---CCCEEEechHHE
Confidence 57899999999999986 468899999764
No 497
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=95.04 E-value=0.01 Score=42.50 Aligned_cols=29 Identities=24% Similarity=0.636 Sum_probs=24.4
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
+++|+.+.|++||.++. ++..|++|+...
T Consensus 31 ~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv 59 (68)
T 2djq_A 31 VILLRRQLDENWYQGEI---NGVSGIFPASSV 59 (68)
T ss_dssp EEEEEECCCSSEEEEEE---TTEEEEEESSSE
T ss_pred EEEEEEecCCCEEEEEE---CCcEEEeehHHE
Confidence 47899999999999985 468999998654
No 498
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.03 E-value=0.0098 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHh
Q psy933 93 RKTLVLLGAHGVGRRHIKNTLIN 115 (330)
Q Consensus 93 ~r~ivLvGpsGvGKstL~~~L~~ 115 (330)
..-|+|+|++|||||||.++|..
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999874
No 499
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=95.03 E-value=0.0068 Score=43.59 Aligned_cols=29 Identities=24% Similarity=0.889 Sum_probs=24.7
Q ss_pred CcEEEeCCCCCceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
|++|+.+.|++||.++.. +..|++|+...
T Consensus 32 ~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv 60 (69)
T 2dil_A 32 ILEVILEGEDGWWTVERN---GQRGFVPGSYL 60 (69)
T ss_dssp EEEEEECCSSSEEEEEET---TEEEEEEGGGC
T ss_pred EEEEEECCCCCEEEEEEC---CCEEEEehHHe
Confidence 578999999999999874 68999998664
No 500
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.02 E-value=0.0062 Score=44.83 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=23.9
Q ss_pred CcEEEeCCCC-CceeEEeCCCCCCceeeCChhH
Q psy933 1 MFQIISKDDH-NWWQARKDNVAGSAGLIPSPEL 32 (330)
Q Consensus 1 iL~v~~~~D~-~WWQA~~~~~~~~~GlIPS~~~ 32 (330)
||+|+.+.|+ +||+++. ++..|++|+...
T Consensus 38 ~i~v~~~~~~~gWw~g~~---~g~~G~~P~~yv 67 (76)
T 2csi_A 38 IITVFGEIDEDGFYYGEL---NGQKGLVPSNFL 67 (76)
T ss_dssp EEEEESSCCSSSEEEEEE---TTEEEEEEGGGC
T ss_pred EEEEeEecCCCCeEEEEE---CCcEEEEehHHE
Confidence 5789999875 7999986 468999999765
Done!