RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy933
(330 letters)
>1kjw_A Postsynaptic density protein 95; protein-protein interaction,
scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP:
b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Length = 295
Score = 295 bits (757), Expect = e-100
Identities = 72/286 (25%), Positives = 130/286 (45%), Gaps = 32/286 (11%)
Query: 2 FQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRK 58
+I D WWQAR+ D+ G IPS E R
Sbjct: 31 LHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREW-------------------- 70
Query: 59 KKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
+L + + + + +++YE V ++ + +++LG + + L+++FP
Sbjct: 71 SRLKAKDWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEFP 127
Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFIS-HDEMMSDIAANQYLEYGTHEDAMYGTKLETI 177
DK+ VPHTTR R E +GR Y+F+S ++M DI A++++E G + +YGT ++++
Sbjct: 128 DKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSV 187
Query: 178 RRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDG-----SLEKLAKE 232
R + ++GK ILDV A++ L+ P +FI L+N+ + + K
Sbjct: 188 REVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDR 247
Query: 233 SDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSW 278
+ L+ + F V + EE +++ IE+L W+P
Sbjct: 248 ATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARE 293
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3,
guanylate kinase, phosphorylation-depen cell membrane;
1.60A {Drosophila melanogaster} PDB: 3uat_A*
Length = 292
Score = 284 bits (729), Expect = 1e-95
Identities = 72/286 (25%), Positives = 129/286 (45%), Gaps = 41/286 (14%)
Query: 2 FQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRK 58
+ + D WWQAR+ DN G++PS E +
Sbjct: 35 LHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERK---------------------- 72
Query: 59 KKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP 118
A+ +V + ++++YE V +L + +++LG + I + LI+++P
Sbjct: 73 -------MRARDRSVKSEENVLSYEAVQRLSINYTRPVIILGP---LKDRINDDLISEYP 122
Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTKLETI 177
DK+ VPHTTR R E +GR Y+F+S E M DI + ++E G + D +YGT + ++
Sbjct: 123 DKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASV 182
Query: 178 RRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDY-----DGSLEKLAKE 232
R + ++GK ILDV A+K L+ + P VFI + ++ + + +K +
Sbjct: 183 REVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYER 242
Query: 233 SDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSW 278
+ ++ + +F V + IEE ++ I W+P
Sbjct: 243 AIKMEQEFGEYFTGVVQGDTIEEIYSKVKSMIWSQSGPTIWVPSKE 288
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 275 bits (703), Expect = 6e-87
Identities = 74/287 (25%), Positives = 131/287 (45%), Gaps = 32/287 (11%)
Query: 1 MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGR 57
+ +I D WWQAR+ D+ G IPS E R + R
Sbjct: 456 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERRE-----------------WSR 498
Query: 58 KKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF 117
K + + + + +++YE V ++ + +++LG + + L+++F
Sbjct: 499 LKAK---DWGSSSGSQGREDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEF 552
Query: 118 PDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM-SDIAANQYLEYGTHEDAMYGTKLET 176
PDK+ VPHTTR R E +GR Y+F+S E M DI A++++E G + +YGT +++
Sbjct: 553 PDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQS 612
Query: 177 IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDG-----SLEKLAK 231
+R + ++GK ILDV A++ L+ P +FI L+N+ + + K
Sbjct: 613 VREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFD 672
Query: 232 ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSW 278
+ L+ + F V + EE +++ IE+L W+P
Sbjct: 673 RATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPARE 719
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 245 bits (628), Expect = 8e-82
Identities = 94/193 (48%), Positives = 143/193 (74%), Gaps = 3/193 (1%)
Query: 82 YEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRA 141
L RKTLVL+GA GVGR HIKN L+++ P+K+ YPVP+TTR PR EE+G+
Sbjct: 8 SSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKE 67
Query: 142 YYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRT 201
Y+FIS +EM +I+AN++LE+G+++ M+GTK ET+ +IH++ KIAILD+EPQ LKI+RT
Sbjct: 68 YHFISTEEMTRNISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRT 127
Query: 202 GEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILE 261
E SPF+VFIA ++ +L++L K+S+ ++S Y H+FDL++VNN ++ET+ L+
Sbjct: 128 AELSPFIVFIAPTDQGTQTE---ALQQLQKDSEAIRSQYAHYFDLSLVNNGVDETLKKLQ 184
Query: 262 KAIEELHTTPQWI 274
+A ++ ++PQW+
Sbjct: 185 EAFDQACSSPQWV 197
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 240 bits (614), Expect = 8e-80
Identities = 125/178 (70%), Positives = 153/178 (85%)
Query: 90 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDE 149
S RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+PHTTR P+ DEENG+ YYF+SHD+
Sbjct: 2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61
Query: 150 MMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVV 209
MM DI+ N+YLEYG+HEDAMYGTKLETIR+IH++G IAILDVEPQALK+LRT EF+PFVV
Sbjct: 62 MMQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVV 121
Query: 210 FIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL 267
FIAAP + + D SL++L KESDIL+ Y H+FDLT++NN+I+ETI LE+A+E +
Sbjct: 122 FIAAPTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVELV 179
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage
dependent calcium channel, transport protein; 1.95A
{Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A
1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Length = 337
Score = 179 bits (454), Expect = 5e-54
Identities = 42/291 (14%), Positives = 89/291 (30%), Gaps = 45/291 (15%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKL 61
+ K +++WW R G IPSP E + +
Sbjct: 70 LHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEF---------KLHSK 120
Query: 62 YKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRR---HIKNTLINKFP 118
K K D+V + +VL+G G ++ L +
Sbjct: 121 EKRMPFFKKTEHTPPYDVVPS----------MRPVVLVGPSLKGYEVTDMMQKALFDFLK 170
Query: 119 DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAM--YGTKLET 176
++ + TR ++ ++++ + + +E ++ +++E
Sbjct: 171 HRFEGRISI-TRVTAD--------ISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSEIER 221
Query: 177 IRRIHQEGKIAILDVEP-QALKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKE--- 232
I + + ++ +LD + L +P VV++ + L S K +
Sbjct: 222 IFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLN 281
Query: 233 -----SDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL---HTTPQWIP 275
+D L FD+ + N +E+ L +E P
Sbjct: 282 VQMVAADKLAQCPPELFDVILDENQLEDACEHLADYLEAYWKATHPPSSNL 332
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 165 bits (419), Expect = 3e-48
Identities = 58/289 (20%), Positives = 103/289 (35%), Gaps = 45/289 (15%)
Query: 2 FQIIS---KDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIF 55
F+++ W A + ++ G+IP+ E + +
Sbjct: 131 FRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFW 190
Query: 56 GRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN 115
+ +K N + DL K P+++R V+L G R
Sbjct: 191 RFRGL-----RSSKRNLRKSREDLSAQPVQTKFPAYER---VVLREAGFLR--------- 233
Query: 116 KFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLE 175
P P+ R + EE IA ++ + GT + + +L
Sbjct: 234 --PVTIFGPIADVAREKLAREEPDI-----------YQIAKSEPRDAGTDQRSSGIIRLH 280
Query: 176 TIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSLE 227
TI++I + K A+LDV P A+ L ++ P VVF+ Q + S
Sbjct: 281 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 340
Query: 228 KLAKESDILKSAYEHFFDLTV-VNNDIEETIGILEKAIEELHTTPQWIP 275
KL + S L+ H F T+ +N+ + G L++AI++ W+
Sbjct: 341 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVS 389
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 165 bits (418), Expect = 2e-47
Identities = 58/293 (19%), Positives = 102/293 (34%), Gaps = 45/293 (15%)
Query: 2 FQIIS---KDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIF 55
F+++ W A + ++ G+IP+ E + +
Sbjct: 123 FRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGDRADFW 182
Query: 56 GRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN 115
+ +K N + DL K P+++R V+L G R
Sbjct: 183 RFRGL-----RSSKRNLRKSREDLSAQPVQTKFPAYER---VVLREAGFLR--------- 225
Query: 116 KFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLE 175
P P+ R + EE IA ++ + GT + + +L
Sbjct: 226 --PVTIFGPIADVAREKLAREEPDI-----------YQIAKSEPRDAGTDQRSSGIIRLH 272
Query: 176 TIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSD--------YDGSLE 227
TI++I + K A+LDV P A+ L ++ P VVF+ Q + S
Sbjct: 273 TIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSAR 332
Query: 228 KLAKESDILKSAYEHFFDLTVVNNDIEETI-GILEKAIEELHTTPQWIPVSWL 279
KL + S L+ H F T+ N + + G L++AI++ W+
Sbjct: 333 KLYERSHKLRKNNHHLFTTTINLNSMNDGWYGALKEAIQQQQNQLVWVSEGKA 385
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 158 bits (400), Expect = 3e-46
Identities = 56/312 (17%), Positives = 93/312 (29%), Gaps = 72/312 (23%)
Query: 2 FQIISKDDHN---------WWQAR---KDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQ 49
F ++ W A +D G+IP+ E + +
Sbjct: 29 FHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVG 88
Query: 50 VNCSIFGRK----KKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTL--------- 96
S +L + AK + DL + P ++R L
Sbjct: 89 PGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPV 148
Query: 97 VLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAA 156
V+LG L + PD++ +R+ +
Sbjct: 149 VILGPV---ADIAMQKLTAEMPDQFEIA-ETVSRTDSPSK-------------------- 184
Query: 157 NQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQL 216
KL+T+R I ++ K A+LDV P A++ L ++ P VVF
Sbjct: 185 --------------IIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESR 230
Query: 217 QNLSD--------YDGSLEKLAKESDILKSAYEHFFDLTV-VNNDIEETIGILEKAIEEL 267
L S +L ++ L+ H F T+ +N + L+ I E
Sbjct: 231 PALKALRQWLAPASRRSTRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAIIREQ 290
Query: 268 HTTPQWIPVSWL 279
T P W L
Sbjct: 291 QTRPIWTAEDQL 302
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 118 bits (299), Expect = 1e-32
Identities = 50/181 (27%), Positives = 94/181 (51%), Gaps = 10/181 (5%)
Query: 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
+ +V+ G G G+ + L ++PD + + V TTR+PR+ E NG+ Y F+S DE S
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIA 212
I N+++E+ YG+ + +++++ + GK ILD++ Q + E + +FIA
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 213 APQLQNL--------SDYDGSLEK-LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKA 263
P +++L ++ + S+ K L+ L A D +VN+D+++ L+
Sbjct: 122 PPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDF 181
Query: 264 I 264
I
Sbjct: 182 I 182
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus
musculus} SCOP: c.37.1.1
Length = 198
Score = 116 bits (293), Expect = 1e-31
Identities = 59/191 (30%), Positives = 100/191 (52%), Gaps = 18/191 (9%)
Query: 96 LVLLGAHGVGRRHIKNTLINK----FPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMM 151
+VL G G G K+TL+ K + + V HTTR+PR EE+G+ YYF++ + M
Sbjct: 7 VVLSGPSGAG----KSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQ 62
Query: 152 SDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFI 211
DIAA ++E+ +YGT E +R + +I +LDV+ Q ++ ++ + P +F+
Sbjct: 63 RDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFV 122
Query: 212 AAPQLQNL--------SDYDGSLEK-LAK-ESDILKSAYEHFFDLTVVNNDIEETIGILE 261
P L L ++ + SL K LA +D+ S FDL ++N+D+++ L+
Sbjct: 123 QPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLK 182
Query: 262 KAIEELHTTPQ 272
+A+ E Q
Sbjct: 183 QALSEEIKKAQ 193
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 115 bits (290), Expect = 4e-31
Identities = 40/180 (22%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
LV+ G GVG+ + ++++FP ++ + + TTR+ R E NG YYF+ D+ +
Sbjct: 15 LVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLK 74
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFV-VFIAA 213
Q+LE+ + + YGT EGKI + ++ ++ + + +F+
Sbjct: 75 EGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKP 134
Query: 214 PQLQNL--------SDYDGSLEK-LAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAI 264
P + L ++ + K + + + + A + F+ +VN+D+ T L + +
Sbjct: 135 PSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVGFNYFIVNDDLARTYAELREYL 194
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 111 bits (279), Expect = 2e-29
Identities = 45/190 (23%), Positives = 81/190 (42%), Gaps = 19/190 (10%)
Query: 92 KRKTLVLLGAHGVGRRHIKNTLINK----FPDKYAYPVPHTTRSPRSDEENGRAYYFISH 147
LV+ G GVG K TLI K FP+ + + V TTR R E+ G YYFI
Sbjct: 22 NIYPLVICGPSGVG----KGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDK 77
Query: 148 DEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSP 206
+ +LEY + + YGT + ++ KI + ++ ++ ++
Sbjct: 78 TIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKN 137
Query: 207 FV-VFIAAPQLQNL--------SDYDGSLEK-LAKESDILKSAYEHFFDLTVVNNDIEET 256
+ +FI P L ++ ++K + + + L A F+L+++N+D+ T
Sbjct: 138 ALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLT 197
Query: 257 IGILEKAIEE 266
L+ +
Sbjct: 198 YQQLKNYLLN 207
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 100 bits (251), Expect = 2e-25
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
+VL G GVG+ ++ + Y Y + TTR R E +G Y+F + D + I
Sbjct: 9 IVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIK 68
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215
+Q++EY + YGT ++ ++ EG L++E + K +R +F+A P
Sbjct: 69 DDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPS 128
Query: 216 LQNLSDYDGSLEKLAKESD--I---LKSA-----YEHFFDLTVVNNDIEETIGILEKAIE 265
L++L + L ESD I + A + +D VVN+++E ++ +E
Sbjct: 129 LEHLRE---RLVGRGTESDEKIQSRINEARKEVEMMNLYDYVVVNDEVELAKNRIQCIVE 185
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 97.2 bits (243), Expect = 2e-24
Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 20/184 (10%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
+VL G GVG+ ++ + + Y + TTR PR E++G YYF S + I
Sbjct: 11 IVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIK 70
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQ 215
+ LEY + YGT LE + G L++E Q +R +F+ P
Sbjct: 71 DGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPD 130
Query: 216 LQNLSDYDGSLEKLAKESD--I---LKSA-----YEHFFDLTVVNNDIEETIGILEKAIE 265
L L + + ES + +++A +D VVN+ + A++
Sbjct: 131 LSELKN---RIIGRGTESMEVVEERMETAKKEIEMMASYDYAVVNDV-------VANAVQ 180
Query: 266 ELHT 269
++
Sbjct: 181 KIKG 184
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 92.6 bits (231), Expect = 1e-22
Identities = 51/187 (27%), Positives = 76/187 (40%), Gaps = 25/187 (13%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
+VL G VG+ + L + P+ + V TTR+PR E +G Y+FI I
Sbjct: 23 VVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLID 81
Query: 156 ANQYLEYGT-HEDA-MYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIA 212
+ LE+ H GT + +R G +++V+ A I +T + VF+A
Sbjct: 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-VFLA 140
Query: 213 APQLQNLSDYDGSLEKLAKESD--I---LKSA-----YEHFFDLTVVNNDIEETIGILEK 262
P Q+L L E+ I L +A + FD VVN LE
Sbjct: 141 PPSWQDLQA---RLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRR-------LES 190
Query: 263 AIEELHT 269
A EL +
Sbjct: 191 ACAELVS 197
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography,
emerald biostructures, ATP-binding, cytoplasm,
nucleotide-binding; HET: 5GP; 1.95A {Anaplasma
phagocytophilum}
Length = 231
Score = 92.3 bits (230), Expect = 3e-22
Identities = 44/181 (24%), Positives = 73/181 (40%), Gaps = 14/181 (7%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
LVL G G+ + N L+ K + V TTR+ R E+ G+ YYF+ +E + +
Sbjct: 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIAAP 214
+ +E+ YG + + +G +L ++ Q A K + +FI P
Sbjct: 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPP 149
Query: 215 QLQNLSDYDGSLEKLAKESDI-----LKSAYE---HF--FDLTVVNNDIEETIGILEKAI 264
++ L L + LK A H +D +VN DIEET + +
Sbjct: 150 SMEELRR---RLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNIL 206
Query: 265 E 265
Sbjct: 207 R 207
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides,
nucleotides, transferase; HET: 5GP; 1.85A {Coxiella
burnetii}
Length = 205
Score = 85.2 bits (212), Expect = 7e-20
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
++ G G+ + L+ + + HTTR R ++ G Y+FI + +
Sbjct: 10 FIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 68
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQ-ALKILRTGEFSPFVVFIAAP 214
+LE+ T + YGT+ + + R + G+ +L+++ Q A +I + +FI P
Sbjct: 69 EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALS-IFILPP 127
Query: 215 QLQNLSDYDGSLEKLAKESDI-----LKSAYE---HF--FDLTVVNNDIEETIGILEKAI 264
++ L + L K ++ L A E H+ FD VVN++ ++ + L I
Sbjct: 128 SIEALRE---RLIKRRQDDTAIIEQRLALAREEMAHYKEFDYLVVNDNFDQAVQNLIHII 184
Query: 265 E 265
Sbjct: 185 S 185
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase;
2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A*
2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Length = 219
Score = 84.1 bits (209), Expect = 2e-19
Identities = 46/185 (24%), Positives = 76/185 (41%), Gaps = 22/185 (11%)
Query: 96 LVLLGAHGVGRRHIKNTLINKF-----PDKYAYPVPHTTRSPRSDEENGRAYYFISHDEM 150
++ G G K++LI V HTTR PR E +G Y+F++HDE
Sbjct: 19 YIVSAPSGAG----KSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEF 74
Query: 151 MSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVF 210
I+ + +LE+ YGT E I ++ G LD++ Q + +R +F
Sbjct: 75 KEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIF 134
Query: 211 IAAPQLQNLSDYDGSLEKLAKESDI-----LKSAYE---HF--FDLTVVNNDIEETIGIL 260
I P L L ++S+ + A H+ +D +VN+D + + L
Sbjct: 135 ILPPSKIELDR---RLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDL 191
Query: 261 EKAIE 265
+ I
Sbjct: 192 KTIIR 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 1e-06
Identities = 43/327 (13%), Positives = 86/327 (26%), Gaps = 99/327 (30%)
Query: 23 SAGLIPSPE--LQEWRTACSTIDKTKHEQVNCS---------IFGRKKKLYKDKYLAKHN 71
+ SPE L+ + ID + + S I ++L K K +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PYE 244
Query: 72 AVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRS 131
L V + + K L+ TTR
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILL------------------------------TTR- 273
Query: 132 PRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYG-TKLETIRRIHQEGKIAILD 190
+ ++D + + + + T E + + D
Sbjct: 274 ----------------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 191 VEPQALKILRTGEFSPFVVFIAAPQLQ---NLSDY-------------DGSLEKLAKESD 234
+ + L +P + I A ++ D + SL L E
Sbjct: 318 LPREVLTT------NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPA 369
Query: 235 ILKSAYEHFFDLTVVNNDI---EETIGILEKAIEELHTTPQWIPVSWLAKESDILKSAYE 291
+ + F L+V + ++ + + + + V+ L K S + K E
Sbjct: 370 EYR---KMFDRLSVFPPSAHIPTILLSLIWFDVIK--SDVMVV-VNKLHKYSLVEKQPKE 423
Query: 292 HFFDLTVVNNDIEETIGILEKAIEELH 318
+ I + + + LH
Sbjct: 424 STISI----PSIYLELKVKLENEYALH 446
Score = 38.7 bits (89), Expect = 0.003
Identities = 45/307 (14%), Positives = 87/307 (28%), Gaps = 94/307 (30%)
Query: 25 GLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRK-------------KKLYKDKYLAKHN 71
+I +++ +T D KH VNC +K++ L+
Sbjct: 331 SIIAE-SIRDGL---ATWDNWKH--VNCDKLTTIIESSLNVLEPAEYRKMFDR--LS--- 379
Query: 72 AVFDQ-------------LDLVTYEEVVKLPSFKRKTLV-------LLGAHGV---GRRH 108
VF D++ + +V + + +LV + + +
Sbjct: 380 -VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 109 IKN--TLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTH- 165
++N L D Y P + + Y I H H
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----------------HL 481
Query: 166 EDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAPQLQNLSDYDGS 225
++ + ++ R + LD KI I LQ L Y
Sbjct: 482 KNIEHPERMTLFRMVF-------LDFRFLEQKIRHDSTAWNASGSI-LNTLQQLKFYKPY 533
Query: 226 LEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQ--WIPVSWLAKES 283
+ + + L +A F L K E L + + ++ +A++
Sbjct: 534 ICDNDPKYERLVNAILDF----------------LPKIEENLICSKYTDLLRIALMAEDE 577
Query: 284 DILKSAY 290
I + A+
Sbjct: 578 AIFEEAH 584
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 2e-04
Identities = 49/304 (16%), Positives = 92/304 (30%), Gaps = 102/304 (33%)
Query: 56 GRKKKLYKDKYLAKHNAVFDQLDLVTYE-------EVVKL-PSFKRKTLVLLGAHGVGRR 107
G LYK A+ V+++ D + ++V P T+ G G +
Sbjct: 1630 GMGMDLYKTSKAAQ--DVWNRADNHFKDTYGFSILDIVINNP--VNLTIHFGGEKG---K 1682
Query: 108 HIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHED 167
I+ + Y+ + T + E F +E + + + +
Sbjct: 1683 RIR--------ENYSAMIFETIVDGKLKTEK----IFKEINEHSTSYT------FRSEKG 1724
Query: 168 AMYGTKLETIRRIHQEGKIAILDVEPQALKILRT---------------GEFS------- 205
+ T+ T Q A+ +E A + L++ GE++
Sbjct: 1725 LLSATQF-T-----Q---PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLAD 1775
Query: 206 --PF-----VVFI-------AAPQLQ-NLSDYD------------GSLEKLAKESDILKS 238
VVF A P+ + S+Y S E L + +
Sbjct: 1776 VMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 239 AYEHFFDLTVVNNDIE-ETIGI------LEKAIEEL-HTTPQWIPVSWLAKESDILKSAY 290
+ +VN ++E + L+ L Q I + L ++S L+
Sbjct: 1836 RTGWL--VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIEL-QKSLSLEEVE 1892
Query: 291 EHFF 294
H F
Sbjct: 1893 GHLF 1896
Score = 39.3 bits (91), Expect = 0.002
Identities = 34/249 (13%), Positives = 68/249 (27%), Gaps = 84/249 (33%)
Query: 119 DKYAYPVPHTTRSPRSDEEN-------GRAYYFISHDEMMSDIAA-------------NQ 158
+++ +P T +D+E G+ ++S S + N
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 159 YL----------EYGTHEDAMYGTKLETIR---RIHQEGKIAILDVEPQAL-KILRTGEF 204
YL + D E I+ K AL + + G
Sbjct: 95 YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA 154
Query: 205 SPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAI 264
+F Q G+ + +E L+ Y+ + L + + I + +
Sbjct: 155 QLVAIF--GGQ--------GNTDDYFEE---LRDLYQTYHVL------VGDLI---KFSA 192
Query: 265 EELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQW- 323
E L L + + + + + + + +E TP
Sbjct: 193 ETLSE---------LIRTTLDAEKVFTQGLN--------------ILEWLENPSNTPDKD 229
Query: 324 ----IPVSW 328
IP+S
Sbjct: 230 YLLSIPISC 238
Score = 31.2 bits (70), Expect = 0.53
Identities = 46/298 (15%), Positives = 90/298 (30%), Gaps = 130/298 (43%)
Query: 14 QARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAV 73
+D++ + G +PSP L + S + + EQV Y+ K N+
Sbjct: 322 SILEDSLENNEG-VPSPML-----SISNLTQ---EQV-------------QDYVNKTNS- 358
Query: 74 FDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPR 133
LP+ + ++ +L+N +
Sbjct: 359 -------------HLPA---------------GKQVEISLVN---------------GAK 375
Query: 134 SDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEP 193
+ + ++ G ++YG L +R+ LD
Sbjct: 376 N---------LV--------VS-------G-PPQSLYGLNLT-LRKAKAPSG---LD--- 403
Query: 194 QALKIL---RTGEFSPFVVF--IAAP---QLQNLSDYDGSLEKLAKESDI------LKSA 239
Q+ +I R +FS F +A+P L L + K ++++ ++
Sbjct: 404 QS-RIPFSERKLKFS--NRFLPVASPFHSHL--LVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 240 YEHFFDLTVVNNDIEETIG-ILEKAIEELHTTPQWIPVSWLAKESDILKSAYEHFFDL 296
FD +D+ G I E+ ++ + PV W + H D
Sbjct: 459 VYDTFD----GSDLRVLSGSISERIVDCIIRL----PVKWET----TTQFKATHILDF 504
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 37.4 bits (87), Expect = 6e-04
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPSP----------ELQEW 35
+ ++ + +WW+ + + G G +PS E EW
Sbjct: 44 YCLLDSSEIHWWRVQ--DRNGHEGYVPSSYLVEKSPNNLETYEW 85
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3
domain, phosphorylation; NMR {Mus musculus} SCOP:
b.34.2.1
Length = 67
Score = 36.5 bits (85), Expect = 0.001
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS--------PELQEW 35
+ I+ K+D +WW+AR + GS G IPS L ++
Sbjct: 27 YIILEKNDLHWWRAR--DKYGSEGYIPSNYVTGKKSNNLDQY 66
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 35.8 bits (83), Expect = 0.002
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ ++ + +WW+ + + G G PS L E
Sbjct: 45 YYLLDSSEIHWWRVQ--DKNGHEGYAPSSYLVE 75
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+I K + WW A G G+IP P +++
Sbjct: 27 RIRDKPEEQWWNAEDSE--GKRGMIPVPYVEK 56
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ I+ + + WW+AR + G G IPS
Sbjct: 33 YFILEESNLPWWRAR--DKNGQEGYIPS 58
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 36.5 bits (84), Expect = 0.002
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
I + D+ W+ A+ N G GL+P
Sbjct: 29 SICAHYDYEWFIAKPINRLGGPGLVPV 55
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 34.9 bits (81), Expect = 0.002
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+I K WW A+ + G+ GL+P L+
Sbjct: 36 LVIEKKPDGWWIAK--DAKGNEGLVPRTYLEP 65
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 34.5 bits (80), Expect = 0.004
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+I K + WW A G G+IP
Sbjct: 29 RIRDKPEEQWWNAEDSE--GKRGMIPV 53
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 34.3 bits (79), Expect = 0.006
Identities = 7/35 (20%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 1 MFQIISK-DDHNWWQARKDNVAGSAGLIPSPELQE 34
+ I+ ++ +W++ + + +G GL+ + L+E
Sbjct: 41 VVTILEACENKSWYRVK-HHTSGQEGLLAAGALRE 74
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 34.8 bits (80), Expect = 0.007
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I + + W+ A+ G GL+P
Sbjct: 32 ICAHHNCEWFIAKPIGRLGGPGLVPV 57
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 35.9 bits (82), Expect = 0.008
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 4/34 (11%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPSP--ELQ 33
+I+SK + +WW+AR N G+ GL+P+ ++Q
Sbjct: 143 LEILSKTNQDWWEAR--NALGTTGLVPANYVQIQ 174
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 33.6 bits (77), Expect = 0.012
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 2 FQIISK--DDHNWWQARKDNVAGSAGLIPS 29
++I K +D WW+ + N G GL+P
Sbjct: 42 MEVIEKPENDPEWWKCK--NARGQVGLVPK 69
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 33.0 bits (76), Expect = 0.014
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 39 KFQILNSSEGDWWEAR-SLTTGETGYIPS 66
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 35.6 bits (81), Expect = 0.017
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLY 62
+I+SK + +WW+AR N G+ GL+P+ +Q + Q + G + +
Sbjct: 173 EILSKTNQDWWEAR--NALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSSGGGAERF 230
Query: 63 KD 64
Sbjct: 231 SS 232
Score = 27.5 bits (60), Expect = 6.3
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+ K + ++A + G G +P
Sbjct: 275 LVTQKMSNGMYKAE---LDGQIGSVPH 298
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 32.6 bits (75), Expect = 0.018
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 2 FQIISK--DDHNWWQARKDNVAGSAGLIPS 29
++I K +D WW+ + G GL+P
Sbjct: 31 MEVIEKPENDPEWWKCKNAR--GQVGLVPK 58
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 33.6 bits (77), Expect = 0.023
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS--------PELQEW 35
FQII+ + +WW+AR G +G IPS + +EW
Sbjct: 51 RFQIINNTEGDWWEARS-IATGKSGYIPSNYVVPADSIQAEEW 92
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 32.7 bits (75), Expect = 0.024
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 2 FQIISKDD-HNWWQARKDNVAGSAGLIPS 29
++I D +W +AR N G G +P
Sbjct: 38 LEVIEDGDMEDWVKAR--NKVGQVGYVPE 64
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 32.2 bits (74), Expect = 0.031
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 3 QIISK-DDHNWWQARKDNVAGSAGLIPS 29
I++ D NW++A+ N G G+IP+
Sbjct: 37 TIVAVTKDPNWYKAK--NKVGREGIIPA 62
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 32.0 bits (73), Expect = 0.034
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 6/34 (17%)
Query: 2 FQIISKDDHNWWQAR------KDNVAGSAGLIPS 29
Q++ WW AR G IPS
Sbjct: 32 LQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPS 65
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 34.1 bits (77), Expect = 0.035
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACST 41
+ +I K + WW A + G G+IP P ++++R A ++
Sbjct: 160 ILRIRDKPEEQWWNAE--DSEGKRGMIPVPYVEKYRPASAS 198
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 31.7 bits (72), Expect = 0.049
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 1 MFQIISKDDHNWWQAR-KDNVAGSAGLIPS 29
+++ ++ + WW + D V G +PS
Sbjct: 33 SMEVLERNPNGWWYCQILDGVKPFKGWVPS 62
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 31.5 bits (72), Expect = 0.053
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 2 FQIISKDD-HNWWQARKDNVAGSAGLIPS 29
++ +D W + R+ G G +P+
Sbjct: 32 LSLMEEDKGDGWTRVRRKE--GGEGYVPT 58
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 31.1 bits (71), Expect = 0.060
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
I+ + +WW AG G IP+
Sbjct: 33 LILRQTTADWWWGE---RAGCCGYIPA 56
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 31.6 bits (72), Expect = 0.065
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 30 FQILNSSEGDWWEAR-SLTTGETGYIPS 56
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 31.2 bits (71), Expect = 0.071
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++ KD+ +WW G G P+
Sbjct: 32 RVFFKDNEDWWYGSIGK--GQEGYFPA 56
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C
4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A
1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C
1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 31.2 bits (71), Expect = 0.074
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI+ +WW+AR G G IPS
Sbjct: 30 KFQILEFGPGDWWEAR-SLTTGETGYIPS 57
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic
protein NCK2; T-cell receptor, SH3 domain, immunology,
SH2 domain; NMR {Homo sapiens}
Length = 86
Score = 31.3 bits (71), Expect = 0.074
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 5 ISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ D WW+ R N A G +PS ++
Sbjct: 58 LLDDSKTWWRVR--NAANRTGYVPSNYVER 85
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2
domain, signaling protein; NMR {Homo sapiens}
Length = 72
Score = 31.1 bits (71), Expect = 0.079
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
++ WW+ R N G +PS
Sbjct: 32 LWLLDDSKS-WWRVR--NSMNKTGFVPS 56
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 30.7 bits (70), Expect = 0.087
Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 5 ISKDDHNWWQARKDNVAGSAGLIPS 29
I D WW+ R + G +G +P+
Sbjct: 28 ILDDRRQWWKVRNAS--GDSGFVPN 50
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil,
cytoplasm, SH3 domain, signaling protein; NMR {Homo
sapiens} PDB: 2rol_A
Length = 68
Score = 30.7 bits (70), Expect = 0.091
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 5 ISKDDHNWWQARKDNVAGSAGLIPS 29
+ D WW+ R + AG G +P
Sbjct: 35 VLDDSRKWWKVR--DPAGQEGYVPY 57
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 30.7 bits (70), Expect = 0.097
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 5 ISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ D WW+ R N A G +PS ++
Sbjct: 31 LLDDSKTWWRVR--NAANRTGYVPSNYVER 58
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 30.8 bits (70), Expect = 0.099
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 2 FQIISKDDHNWWQARKDNVAGSA--GLIPS 29
F + K++ WW D G+ G +P
Sbjct: 35 FHVARKEEQWWWATLLDEAGGAVAQGYVPH 64
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein
3, protein-protein interaction, structural genomics;
NMR {Homo sapiens}
Length = 68
Score = 30.7 bits (70), Expect = 0.100
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 5 ISKDDHNWWQARKDNVAGSAGLIPS 29
+ WW + N AG +G IPS
Sbjct: 34 VLDHSKRWWLVK--NEAGRSGYIPS 56
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 30.8 bits (70), Expect = 0.11
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
+++ + +WW+ + G +P+
Sbjct: 27 LTLLNSTNKDWWKVEVN---DRQGFVPA 51
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 33.2 bits (76), Expect = 0.11
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
QI++ + +WW A + G G IPS
Sbjct: 26 RLQIVNNTEGDWWLAHSLS-TGQTGYIPS 53
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 71
Score = 30.4 bits (69), Expect = 0.12
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++I K+ WW R G G P+
Sbjct: 34 EVIRKNLEGWWYIRYL---GKEGWAPA 57
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 30.0 bits (68), Expect = 0.16
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+I K++ WW G +P+
Sbjct: 34 DVIEKNESGWWFVSTS---EEQGWVPA 57
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A
2kr3_A
Length = 65
Score = 30.0 bits (68), Expect = 0.16
Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 2 FQIISKDDHNWWQARKDNVA-----GSAGLIPS 29
+++ + +WW+ G +P+
Sbjct: 26 LTLLNSTNKDWWKVEVKITVNGKTYERQGFVPA 58
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 30.0 bits (68), Expect = 0.17
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 4 IISKDDH-----NWWQARKDNVAGSAGLIPS 29
I+SK D +WW+ R N G+ G IP
Sbjct: 35 ILSKKDPLGRDSDWWKVRTKN--GNIGYIPY 63
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 30.1 bits (68), Expect = 0.18
Identities = 4/27 (14%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+++ + +WW+ + G +P+
Sbjct: 43 TLLNSTNKDWWKVEVN---DRQGFVPA 66
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like
protein; SH3, EPS8, EPS8L2, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 29.9 bits (68), Expect = 0.20
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 5 ISKDDHNWWQARKDNVAGSAGLIPS 29
+ +D WW+ R + +G AG +P
Sbjct: 34 VLEDGRQWWKLR--SRSGQAGYVPC 56
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 29.6 bits (67), Expect = 0.22
Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+++ + +WW+ V G +P+
Sbjct: 31 TLLNSTNKDWWKVE---VNDRQGFVPA 54
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 29.7 bits (67), Expect = 0.23
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 7/31 (22%)
Query: 4 IISKDDH-----NWWQARKDNVAGSAGLIPS 29
I+SK D +WW+ R N G+ G IP
Sbjct: 42 ILSKKDPLGRDSDWWKVRTKN--GNIGYIPY 70
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel
beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP:
b.34.2.1 PDB: 1n5z_A
Length = 92
Score = 30.2 bits (68), Expect = 0.24
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
Query: 4 IISKDDH-----NWWQARKDNVAGSAGLIPSPELQE 34
I+SK D +WW+ R N G+ G IP ++
Sbjct: 42 ILSKKDPLGRDSDWWKVRTKN--GNIGYIPYNYIEI 75
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 29.1 bits (66), Expect = 0.25
Identities = 4/33 (12%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 35
I ++ W + + G +P+ ++
Sbjct: 27 YITREEPSGWSLGKLLD-GSKEGWVPTAYMKPH 58
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein;
1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A
1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A
1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A
...
Length = 62
Score = 29.1 bits (66), Expect = 0.25
Identities = 5/27 (18%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+++ + +WW+ + G G +P+
Sbjct: 32 TLLNSTNKDWWKIEVN---GRQGFVPA 55
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 29.2 bits (66), Expect = 0.30
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+ + +WW+ R G GLIP
Sbjct: 35 LLYQRASDDWWEGR---HNGIDGLIPH 58
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C*
2o88_A 1bbz_A 1awo_A
Length = 63
Score = 29.1 bits (66), Expect = 0.34
Identities = 5/29 (17%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 2 FQIISKD-DHNWWQARKDNVAGSAGLIPS 29
+++ + + W +A+ G +PS
Sbjct: 30 LRVLGYNHNGEWCEAQTK---NGQGWVPS 55
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels,
signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP:
b.34.2.1 PDB: 1h92_A 1kik_A
Length = 62
Score = 28.8 bits (65), Expect = 0.35
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+I+ + WW+A+ G G IP
Sbjct: 30 QLRILEQSGE-WWKAQ-SLTTGQEGFIPF 56
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 28.8 bits (65), Expect = 0.37
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI 42
+ I + W A+ + G +P+ + ++ +T+
Sbjct: 27 IVFISRDEPSGWSLAKLLD-GSKEGWVPTAYMTPYKDTRNTV 67
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 29.2 bits (66), Expect = 0.37
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+ ++D WW + G+ P
Sbjct: 37 VTGEEDQEWWIGHIEGQPERKGVFPV 62
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 28.8 bits (65), Expect = 0.38
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+++ + WW+A+ + G IPS
Sbjct: 31 KMKVLEEHG-EWWKAK-SLLTKKEGFIPS 57
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 31.4 bits (71), Expect = 0.38
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
QI++ + +WW A + G G IPS
Sbjct: 109 RLQIVNNTEGDWWLAHSLS-TGQTGYIPS 136
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 29.1 bits (66), Expect = 0.38
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+++ K W + + G G+ PS
Sbjct: 31 GIRVLGKYQDGWLKGLS-LLTGRTGIFPS 58
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 28.7 bits (65), Expect = 0.41
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
++++D + W ++ G GL+P+
Sbjct: 26 ISLVARDTGSGWTKINNDTTGETGLVPT 53
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 28.7 bits (65), Expect = 0.41
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
I D NWW+ G GLIPS
Sbjct: 29 YITDMSDTNWWKGT---SKGRTGLIPS 52
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 28.7 bits (65), Expect = 0.42
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+ K +WW + + +G +GL+P+
Sbjct: 30 LDDKKSKDWWMCQLVD-SGKSGLVPA 54
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 29.0 bits (65), Expect = 0.43
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
Q++ K + WW R G PS
Sbjct: 34 QVLEKQESGWWYVRFG---ELEGWAPS 57
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 29.3 bits (66), Expect = 0.44
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
++ + WW+AR G IPS
Sbjct: 49 QMVVLEESG-EWWKAR-SLATRKEGYIPS 75
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 28.9 bits (65), Expect = 0.45
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++ + +WW+ G GLIP
Sbjct: 36 RLHERASSDWWRGE---HNGMRGLIPH 59
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
Length = 77
Score = 28.8 bits (65), Expect = 0.46
Identities = 5/27 (18%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 4 IISKDDH-NWWQARKDNVAGSAGLIPS 29
+ + + W + + + G GL+P+
Sbjct: 37 VTNPNVGGGWLEGKNNK--GEQGLVPT 61
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 28.9 bits (65), Expect = 0.47
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
++IS + WW+A G IP
Sbjct: 41 KLRVISDEGG-WWKAI-SLSTGRESYIPG 67
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 30.7 bits (68), Expect = 0.53
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSP 30
+ II K + WW AR + G G+IP P
Sbjct: 149 ILVIIEKPEEQWWSARNKD--GRVGMIPVP 176
Score = 29.2 bits (64), Expect = 1.7
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ ++ + + W+ + G GL P
Sbjct: 263 IVKVTRMNINGQWEGEVN---GRKGLFPF 288
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 28.3 bits (64), Expect = 0.61
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
I D NWW+ G GLIPS
Sbjct: 32 IYITDMSDTNWWKGT---SKGRTGLIPS 56
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 27.9 bits (63), Expect = 0.70
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+ + +WW+ R G GL+P
Sbjct: 32 LLYHRASEDWWEGR---HNGIDGLVPH 55
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton,
phosphorylation, SH3 domain, DNA damage, DNA repair,
nucleus; NMR {Saccharomyces cerevisiae}
Length = 71
Score = 28.0 bits (63), Expect = 0.79
Identities = 7/26 (26%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+ K +WW + + +G +GL+P+
Sbjct: 34 LDDKKSKDWWMCQLVD-SGKSGLVPA 58
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 30.0 bits (67), Expect = 0.87
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
++ D NWW+ G G+ P
Sbjct: 183 IHVMDNSDPNWWKGA---CHGQTGMFPR 207
Score = 27.0 bits (59), Expect = 9.1
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 1 MFQIISKD-DHNWWQARKDNVAGSAGLIPS 29
+ ++++++ D NW++A + G G IP
Sbjct: 24 ILKVLNEECDQNWYKAELN---GKDGFIPK 50
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 28.0 bits (63), Expect = 0.90
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I K W A ++ GL+P
Sbjct: 32 ISYKHGQGWLVA-ENESGSKTGLVPE 56
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 28.1 bits (63), Expect = 0.92
Identities = 4/28 (14%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 2 FQIISKDDHNWWQARKDNVAGSAGLIPS 29
+++ + +WW+ + G +P+
Sbjct: 24 LTLLNSTNKDWWKVEVN---DRQGFVPA 48
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 29.9 bits (66), Expect = 0.98
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKH 47
+ +I K + WW A + G G+IP P ++++R A +++
Sbjct: 158 ILRIRDKPEEQWWNAE--DSEGKRGMIPVPYVEKYRPASASVSALIG 202
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 29.7 bits (68), Expect = 1.0
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 27/75 (36%)
Query: 175 ETIRRIHQEGKIAILDVE---PQALKI------LRTGEFSPFVVFIAAPQLQNLSDYDGS 225
E I++I+QEG IL VE ALK+ L TG+ +V +G
Sbjct: 180 EVIQKINQEG-TTILLVEQNALGALKVAHYGYVLETGQ----IVL------------EGK 222
Query: 226 LEKLAKESDILKSAY 240
+L ++++++ AY
Sbjct: 223 ASELL-DNEMVRKAY 236
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor
complex, DOWN-regulated kinase, ordered activation
loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A*
2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 30.1 bits (68), Expect = 1.0
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
++ + WW+AR G IPS
Sbjct: 32 QMVVLEESGE-WWKAR-SLATRKEGYIPS 58
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 27.1 bits (61), Expect = 1.1
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+ KD WW+ + G G +P+
Sbjct: 30 VHQKDPAGWWEGELN---GKRGWVPA 52
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 27.1 bits (61), Expect = 1.2
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I K W A + GL+P
Sbjct: 28 ISYKHGQGWLVAE-NESGSKTGLVPE 52
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 27.1 bits (61), Expect = 1.2
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
++ + +WW R + GL P+
Sbjct: 28 VLDSSNPSWWTGR---LHNKLGLFPA 50
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif)
2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 27.2 bits (61), Expect = 1.2
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
++ D NWWQ GL PS
Sbjct: 32 VLDDSDANWWQGENH---RGTGLFPS 54
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 27.2 bits (61), Expect = 1.6
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++ K + NW + G GL+P
Sbjct: 33 FVLKKGNDNWATVMFN---GQKGLVPC 56
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 27.3 bits (61), Expect = 1.7
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I D WW+ G GL P+
Sbjct: 44 NIEMIDDGWWRGVCK---GRYGLFPA 66
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3
domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo
sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A
1wlp_B
Length = 193
Score = 28.8 bits (64), Expect = 1.7
Identities = 7/32 (21%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+++ K + WW + G IP+ L+
Sbjct: 37 EVVEKSESGWWFCQMK---AKRGWIPASFLEP 65
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 27.1 bits (60), Expect = 1.8
Identities = 4/26 (15%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+++ + +WW+ + G +P+
Sbjct: 18 LLNSTNKDWWKVEVN---DRQGFVPA 40
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 26.8 bits (60), Expect = 2.0
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ +SK+ WW+ PS
Sbjct: 31 LIHNVSKEPGGWWKGDYGT--RIQQYFPS 57
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 27.4 bits (61), Expect = 2.1
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+++KDD +WWQ + G GL PS
Sbjct: 60 NVMNKDDPDWWQGEIN---GVTGLFPS 83
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural
genomics, northeast structural genomics consortiu
PSI-2, protein structure initiative; NMR {Homo sapiens}
Length = 72
Score = 26.9 bits (60), Expect = 2.1
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
++ D NWW+ GL PS
Sbjct: 44 VLDDSDPNWWKGETH---QGIGLFPS 66
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 27.4 bits (61), Expect = 2.2
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
++ D NWW+ GL PS
Sbjct: 44 VLDDSDANWWKGENH---RGIGLFPS 66
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 26.8 bits (60), Expect = 2.2
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I D WW+ G GL P+
Sbjct: 36 NIEMIDDGWWRGVCK---GRYGLFPA 58
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 26.8 bits (60), Expect = 2.4
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++ + +WW+ + + G P+
Sbjct: 33 TLLEDSNEDWWKGK---IQDRIGFFPA 56
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 27.4 bits (61), Expect = 2.4
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
++ + WW+AR G IPS
Sbjct: 27 QMVVLEESGE-WWKARS-LATRKEGYIPS 53
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42
guanine nucleotide exchange factor (GEF) 9, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 27.0 bits (60), Expect = 2.5
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+++ + +WW + + G P+
Sbjct: 36 KVLDASNKDWWWGQ---IDDEEGWFPA 59
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 26.4 bits (59), Expect = 2.5
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I D +WW + GS GL PS
Sbjct: 27 NIEFVDDDWWLGELEK-DGSKGLFPS 51
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein,
membrane, nuclear protein, phosphorylation,
polymorphism, transport, structural genomics; NMR {Homo
sapiens}
Length = 70
Score = 26.4 bits (59), Expect = 2.6
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++ + D NW++ R G+ P
Sbjct: 33 TLLRQVDENWYEGRI-PGTSRQGIFPI 58
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 26.4 bits (59), Expect = 2.7
Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++I + + WW ++ G G +P
Sbjct: 34 EVILEGEDGWWTVERN---GQRGFVPG 57
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 28.8 bits (64), Expect = 2.7
Identities = 7/43 (16%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTID 43
+ +++ + WW VA G P+ ++ D
Sbjct: 54 VIEVMDATNREWW---WGRVADGEGWFPASFVRLRVNQDEPAD 93
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 28.9 bits (65), Expect = 2.8
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 1 MFQIISK-DDHNWWQARKDNVAGSAGLIPS 29
+ I++ D NW++A+ N G G+IP+
Sbjct: 35 VLTIVAVTKDPNWYKAK--NKVGREGIIPA 62
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 26.0 bits (58), Expect = 3.0
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
II +D WW R G GL P+
Sbjct: 31 DIIKEDPSGWWTGRLR---GKQGLFPN 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 3.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 192 EPQALKILRTG--EFSPFVVFIAAPQLQNLSDYDGSLE 227
E QALK L+ ++ +AP L ++E
Sbjct: 18 EKQALKKLQASLKLYAD----DSAPALA----IKATME 47
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein;
2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB:
2sem_A 3sem_A 1k76_A 1kfz_A
Length = 58
Score = 26.0 bits (58), Expect = 3.2
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+I+KDD NWW+ + + G+ PS
Sbjct: 28 TLINKDDPNWWEGQ---LNNRRGIFPS 51
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3,
SH3-containing adapter molecule 1, SCAM-1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 90
Score = 27.0 bits (60), Expect = 3.2
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+I K + NW++ R G G+ P+
Sbjct: 44 LIRKVNENWYEGRITG-TGRQGIFPA 68
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 26.1 bits (58), Expect = 3.4
Identities = 6/26 (23%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
++ + D NW++ R G+ P
Sbjct: 33 LLRQVDENWYEGRI-PGTSRQGIFPI 57
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor;
hormone-receptor complex, natriuretic peptide receptor,
ALLO activation, signaling protein; HET: NDG NAG; 2.00A
{Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A*
1yk1_A*
Length = 441
Score = 28.6 bits (63), Expect = 3.5
Identities = 23/143 (16%), Positives = 42/143 (29%), Gaps = 5/143 (3%)
Query: 134 SDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEP 193
SD++ R YF + + ++ + +R I ++ I+
Sbjct: 162 SDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASS 221
Query: 194 QA-----LKILRTGEFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTV 248
L R G S F + S DGS ++ K K AY +T+
Sbjct: 222 DTIRSIMLVAHRHGMTSGDYAFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTL 281
Query: 249 VNNDIEETIGILEKAIEELHTTP 271
+ E + +
Sbjct: 282 LRTVKPEFEKFSMEVKSSVEKQG 304
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 26.6 bits (59), Expect = 3.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 7/31 (22%)
Query: 3 QIISKDDH----NWWQARKDNVAGSAGLIPS 29
+I+ D WW A + G G +PS
Sbjct: 39 KILEFKDVTGNTEWWLAEVN---GKKGYVPS 66
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 26.0 bits (58), Expect = 3.9
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I K+D WW+ + + G GL P
Sbjct: 28 NIRKEDGGWWEGQIN---GRRGLFPD 50
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 26.0 bits (58), Expect = 4.0
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I + D NW + G G+ P+
Sbjct: 28 IHKEVDKNWLEGEHH---GRLGIFPA 50
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 26.2 bits (58), Expect = 4.0
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+I K+D W++ + G GL P
Sbjct: 43 YVIKKNDDGWYEGV---MNGVTGLFPG 66
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 26.1 bits (58), Expect = 4.2
Identities = 4/29 (13%), Positives = 8/29 (27%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
++ + D W+ G P
Sbjct: 31 RVDVMQQCDDGWFVGV-SRRTQKFGTFPG 58
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 25.9 bits (58), Expect = 4.2
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
++S+ + +W + V G+ G+ P
Sbjct: 31 LLSRINKDWLEGT---VRGATGIFPL 53
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 25.8 bits (57), Expect = 4.4
Identities = 4/26 (15%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+++ + +WW+ + G +P+
Sbjct: 16 LLNSTNKDWWKVEVN---DRQGFVPA 38
>3b40_A PVDM, probable dipeptidase; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 417
Score = 27.9 bits (62), Expect = 4.6
Identities = 10/68 (14%), Positives = 19/68 (27%)
Query: 122 AYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIH 181
+ P P + + + + + + E RR+
Sbjct: 67 IFGWPEMWNGPNAPHKPTPGFVDEARHQQEIRYKILTGMVRDFPNQVGIAYSPEDFRRLA 126
Query: 182 QEGKIAIL 189
EGK AI+
Sbjct: 127 MEGKFAIV 134
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 25.7 bits (57), Expect = 4.7
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 4 IISKDDHNWWQARKDNVAGS--AGLIPS 29
+ S +D W+ + G G+ P
Sbjct: 34 VTSVEDAEWYFGEYQDSNGDVIEGIFPK 61
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 26.4 bits (58), Expect = 4.8
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 3/24 (12%)
Query: 6 SKDDHNWWQARKDNVAGSAGLIPS 29
KD +++ GLIP
Sbjct: 55 DKDADGFYRGETC---ARLGLIPC 75
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 25.7 bits (57), Expect = 4.9
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I + D NW++ G G+ P
Sbjct: 34 IYKQIDQNWYEGEHH---GRVGIFPR 56
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics,
SH3 domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 26.1 bits (58), Expect = 5.0
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+ ++ WW+ + G G PS
Sbjct: 36 YVTRVEEGGWWEGT---LNGRTGWFPS 59
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins,
CIN85, PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 25.7 bits (57), Expect = 5.2
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+ ++ WW+ G G PS
Sbjct: 32 HVTRVEEGGWWEGT---HNGRTGWFPS 55
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 27.8 bits (62), Expect = 5.4
Identities = 5/30 (16%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 1 MFQIISK-DDHNWWQARKDNVAGSAGLIPS 29
+++ + W +A+ G +PS
Sbjct: 67 KLRVLGYNHNGEWCEAQTK---NGQGWVPS 93
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 25.3 bits (56), Expect = 5.6
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
+ ++ WW+ G G PS
Sbjct: 30 HVTRVEEGGWWEGT---HNGRTGWFPS 53
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 25.7 bits (57), Expect = 5.8
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
IIS+ D + W + G G P+
Sbjct: 34 IISQKDEHCWVGELN---GLRGWFPA 56
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 25.7 bits (57), Expect = 6.0
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+ ++ D NW++ + G +G P
Sbjct: 30 LTNQIDENWYEGM---IHGESGFFPI 52
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain
protein 2A, endophilin 1, EEN-B1, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 25.7 bits (57), Expect = 6.3
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+ ++ D NW++ + G +G P
Sbjct: 34 LTNQIDENWYEGM---LHGHSGFFPI 56
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 25.2 bits (56), Expect = 6.3
Identities = 6/27 (22%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
Q++ K W++ G G+ P+
Sbjct: 28 QLLEKLSPEWYKGS---CNGRTGIFPA 51
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes
cervina}
Length = 338
Score = 27.6 bits (61), Expect = 6.6
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 6/37 (16%)
Query: 88 LPSFKRKTL------VLLGAHGVGRRHIKNTLINKFP 118
L LL +H + ++ +T + P
Sbjct: 156 LARMADIGFSPTEVVHLLASHSIAAQYEVDTDVAGSP 192
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 25.8 bits (57), Expect = 6.6
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
I K + WW + G G P+
Sbjct: 33 IIHEKKEEGWWFGSLN---GKKGHFPA 56
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 25.2 bits (56), Expect = 6.8
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++ D NWW+ G G+ P
Sbjct: 28 HVMDNSDPNWWKGA---CHGQTGMFPR 51
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 25.9 bits (57), Expect = 6.9
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++ K WW+ + G G PS
Sbjct: 43 IVMEKCSDGWWRGSYN---GQVGWFPS 66
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 27.2 bits (61), Expect = 7.1
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 123 YPVPHTTRSPRSDEENGRAYYFISHDEMMSDIAANQYL 160
YPV + S E G + + M + QY
Sbjct: 188 YPVVNFVAPTPSLLEFGEGLWILDQKIM--SWFSEQYF 223
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 25.4 bits (56), Expect = 7.7
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
I KD N W + N G G P
Sbjct: 36 TITFKDQENKWFMGQLN--GKEGSFPV 60
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel,
oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1
PDB: 1pz0_A*
Length = 312
Score = 27.1 bits (61), Expect = 8.1
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 223 DGSLEKLAKES-DILKSAYEHFFDLTVVNNDIEETIGILEKAIEE 266
D SL++L + D+ Y HF D +E + L + +
Sbjct: 108 DESLKRLNTDYIDLF---YIHFPDEHT---PKDEAVNALNEMKKA 146
>2qr4_A Peptidase M3B, oligoendopeptidase F; structural genomics, PSI-2,
protein ST initiative; 2.50A {Enterococcus faecium}
Length = 587
Score = 27.3 bits (61), Expect = 8.1
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 22/102 (21%)
Query: 203 EFSPFVVFIAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEK 262
+ S V + P++ LSD + + KE L+ Y H+ V N +L
Sbjct: 83 KVSEAVSWFE-PEILQLSD--DQIWQYFKEEPKLE-VYRHYIQQIVDNRAH-----VLSA 133
Query: 263 AIEELHTTPQWIPVSWLAKESDILKSAYEHFFDLTVVNNDIE 304
E L LA +I ++ + F L N D+
Sbjct: 134 EQESL-----------LAGAGEIFDASSDTFAVLN--NADLV 162
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 24.9 bits (55), Expect = 8.2
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+ +D+ W + R D+ G GL P+
Sbjct: 31 LGEEDEQGWCRGRLDS--GQLGLYPA 54
>2i5g_A Amidohydrolase; NYSGXRC, NYSGXRC-9311A, PSI2, structural genomics,
protein structure initiative; 2.60A {Pseudomonas
aeruginosa}
Length = 325
Score = 26.9 bits (60), Expect = 8.4
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 141 AYYFISHDEMMSDIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAIL 189
+ +++I A+ L + + IR+ ++GK IL
Sbjct: 41 VSVWEGFQATVNNITASNKLIRDNSDLVIPVRSTADIRKAKEQGKTGIL 89
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 25.3 bits (56), Expect = 8.8
Identities = 6/27 (22%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPS 29
++S+ + +W + V G+ G+ P
Sbjct: 44 FLLSRINKDWLEGT---VRGATGIFPL 67
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 24.9 bits (55), Expect = 9.0
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
I + + WW + GL PS
Sbjct: 28 INEEVEEGWWSGT---LNNKLGLFPS 50
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 24.9 bits (55), Expect = 9.9
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 4/27 (14%)
Query: 4 IISKD-DHNWWQARKDNVAGSAGLIPS 29
+++++ D NW++A + G G IP
Sbjct: 36 VLNEECDQNWYKAELN---GKDGFIPK 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.402
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,370,833
Number of extensions: 332592
Number of successful extensions: 1058
Number of sequences better than 10.0: 1
Number of HSP's gapped: 983
Number of HSP's successfully gapped: 206
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)