RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy933
(330 letters)
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 123 bits (310), Expect = 6e-35
Identities = 124/173 (71%), Positives = 151/173 (87%)
Query: 93 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMS 152
RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+PHTTR P+ DEENG+ YYF+SHD+MM
Sbjct: 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ 62
Query: 153 DIAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIA 212
DI+ N+YLEYG+HEDAMYGTKLETIR+IH++G IAILDVEPQALK+LRT EF+PFVVFIA
Sbjct: 63 DISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIA 122
Query: 213 APQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE 265
AP + + D SL++L KESDIL+ Y H+FDLT++NN+I+ETI LE+A+E
Sbjct: 123 APTITPGLNEDESLQRLQKESDILQRTYAHYFDLTIINNEIDETIRHLEEAVE 175
>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 199
Score = 109 bits (272), Expect = 3e-29
Identities = 53/197 (26%), Positives = 97/197 (49%), Gaps = 9/197 (4%)
Query: 85 VVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYF 144
V ++ + +++LG + + L+++FPDK+ VPHTTR R E +GR Y+F
Sbjct: 1 VTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHF 57
Query: 145 ISHDEMMSDIAANQ-YLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGE 203
+S E M ++E G + +YGT ++++R + ++GK ILDV A++ L+
Sbjct: 58 VSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAH 117
Query: 204 FSPFVVFIAAPQLQNLSDYDGSL-----EKLAKESDILKSAYEHFFDLTVVNNDIEETIG 258
P +FI L+N+ + + + K + L+ + F V + EE
Sbjct: 118 LHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYH 177
Query: 259 ILEKAIEELHTTPQWIP 275
+++ IE+L W+P
Sbjct: 178 KVKRVIEDLSGPYIWVP 194
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 92.7 bits (229), Expect = 3e-23
Identities = 53/187 (28%), Positives = 97/187 (51%), Gaps = 10/187 (5%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
+VL G G G+ + L + + + V HTTR+PR EE+G+ YYF++ + M DIA
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIA 62
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAP- 214
A ++E+ +YGT E +R + +I +LDV+ Q ++ ++ + P +F+ P
Sbjct: 63 AGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS 122
Query: 215 --------QLQNLSDYDGSLEKLAK-ESDILKSAYEHFFDLTVVNNDIEETIGILEKAIE 265
+L+N + ++LA +D+ S FDL ++N+D+++ L++A+
Sbjct: 123 LDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQALS 182
Query: 266 ELHTTPQ 272
E Q
Sbjct: 183 EEIKKAQ 189
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 85.4 bits (210), Expect = 2e-20
Identities = 49/182 (26%), Positives = 94/182 (51%), Gaps = 10/182 (5%)
Query: 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
+ +V+ G G G+ + L ++PD + + V TTR+PR+ E NG+ Y F+S DE S
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 154 IAANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILR-TGEFSPFVVFIA 212
I N+++E+ YG+ + +++++ + GK ILD++ Q +K ++ E + +FIA
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 213 APQLQNLSDY---------DGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKA 263
P +++L + ++L+ L A D +VN+D+++ L+
Sbjct: 122 PPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAETGAHDKVIVNDDLDKAYKELKDF 181
Query: 264 IE 265
I
Sbjct: 182 IF 183
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 83.7 bits (206), Expect = 8e-20
Identities = 44/187 (23%), Positives = 77/187 (41%), Gaps = 10/187 (5%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFP-DKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDI 154
++ G G+ + L+ P V HTTR PR E +G Y+F++HDE I
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 64
Query: 155 AANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFIAAP 214
+ + +LE+ YGT E I ++ G LD++ Q + +R +FI P
Sbjct: 65 SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 124
Query: 215 Q-------LQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAI--E 265
L+ + + + ++ +D +VN+D + + L+ I E
Sbjct: 125 SKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAEYDYLIVNDDFDTALTDLKTIIRAE 184
Query: 266 ELHTTPQ 272
L + Q
Sbjct: 185 RLRMSRQ 191
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 63.9 bits (154), Expect = 7e-13
Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 10/180 (5%)
Query: 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
+ +VL G VG+ + L + P+ + V TTR+PR E +G Y+FI
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 61
Query: 154 IAANQYLEYGTHEDAMYGTKLET--IRRIHQEGKIAILDVEPQALKILRTGEFSPFVVFI 211
I + LE+ ++ + +R G +++V+ + ++ VF+
Sbjct: 62 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 121
Query: 212 AAPQLQNLSDYDGSLEKLAKESDI--LKSA-----YEHFFDLTVVNNDIEETIGILEKAI 264
A P Q+L + L +A + FD VVN +E L +
Sbjct: 122 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLL 181
>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium
channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 96
Score = 48.0 bits (114), Expect = 4e-08
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 3 QIISKDDHNWWQARKDNVAGSAGLIPSP-ELQEWRTA 38
+ K +++WW R G IPSP +L+ R
Sbjct: 54 HVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQ 90
>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 145
Score = 44.7 bits (105), Expect = 2e-06
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTK 46
I K +++WW R G IPSP E + +
Sbjct: 54 FLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRKR 99
>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium
channel {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 136
Score = 44.3 bits (104), Expect = 2e-06
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSP-ELQEWRTA 38
I K ++WW R G IPSP L+ R
Sbjct: 54 FLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLK 92
>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 96
Score = 39.7 bits (92), Expect = 4e-05
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 1 MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWR 36
+ +I D WWQAR+ D+ G IPS E R
Sbjct: 30 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERR 68
>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 57
Score = 34.3 bits (79), Expect = 0.001
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 35
+ +I K + WW A G G+IP P ++++
Sbjct: 25 ILRIRDKPEEQWWNAEDSE--GKRGMIPVPYVEKY 57
>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 67
Score = 30.9 bits (70), Expect = 0.028
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ I+ + + WW+AR N G G IPS + E
Sbjct: 32 EYFILEESNLPWWRARDKN--GQEGYIPSNYVTE 63
>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Caenorhabditis
elegans, SEM-5 [TaxId: 6239]}
Length = 58
Score = 29.3 bits (66), Expect = 0.097
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ +I+KDD NWW+ + + G+ PS
Sbjct: 26 VITLINKDDPNWWEGQLN---NRRGIFPS 51
>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 28.9 bits (65), Expect = 0.12
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
++ D NWW+ G G+ P
Sbjct: 25 FIHVMDNSDPNWWKGACH---GQTGMFPR 50
>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 55
Score = 28.5 bits (64), Expect = 0.14
Identities = 4/34 (11%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ +++ + +WW+ + G +P+ +++
Sbjct: 24 ILTLLNSTNKDWWKVEVN---DRQGFVPAAYVKK 54
>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 58
Score = 28.5 bits (64), Expect = 0.15
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ ++ D NWWQ GL PS
Sbjct: 26 LITVLDDSDANWWQGENH---RGTGLFPS 51
>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId:
9606]}
Length = 62
Score = 28.5 bits (64), Expect = 0.17
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ ++SK + W + G G+ P +++
Sbjct: 29 IILVLSKVNEEWLEGESK---GKVGIFPKVFVED 59
>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 28.6 bits (64), Expect = 0.19
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ I+ K+D +WW+AR GS G IPS +
Sbjct: 26 EYIILEKNDLHWWRARDKY--GSEGYIPSNYVTG 57
>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus
musculus [TaxId: 10090]}
Length = 53
Score = 27.9 bits (62), Expect = 0.21
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ ++ + +WW+ + N G G PS L E
Sbjct: 22 EYYLLDSSEIHWWRVQDKN--GHEGYAPSSYLVE 53
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 29.5 bits (65), Expect = 0.37
Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 19/180 (10%)
Query: 96 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSDIA 155
++L G GVG K TL + K + R ++ + D
Sbjct: 7 ILLTGTPGVG----KTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRV 62
Query: 156 ANQYLEYGTHEDAMYGTKLETIRRIHQEGKIAILDVEPQAL-KILRTGEFSPFVVFIAAP 214
++ + + +L + L + L T ++
Sbjct: 63 VDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRGYNE-------K 115
Query: 215 QLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWI 274
+L + + + ++Y+ + +N EE +++ ++ + QWI
Sbjct: 116 KLTDNIQCEIFQVLYEE----ATASYKEEIVHQLPSNKPEELENNVDQILKWIE---QWI 168
>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 27.9 bits (62), Expect = 0.38
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ + D NW++A+ G G+IP+ +Q+
Sbjct: 31 LTIVAVTKDPNWYKAKNKV--GREGIIPANYVQK 62
>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 27.5 bits (61), Expect = 0.43
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ Q + K + WW+ PS ++E
Sbjct: 30 IIQNVEKQEGGWWRGDYGGKKQ--LWFPSNYVEE 61
>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 74
Score = 27.8 bits (61), Expect = 0.44
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 1 MFQIISKDDHNWWQARKDNVA---GSAGLIPSPELQE 34
+ Q+++ + N + + G +P L
Sbjct: 31 VVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP 67
>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 28.0 bits (62), Expect = 0.48
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ +++KDD +WWQ + G GL PS
Sbjct: 58 LINVMNKDDPDWWQGEIN---GVTGLFPS 83
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 27.5 bits (61), Expect = 0.57
Identities = 7/34 (20%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
+ + ++ WW+ + G G PS ++E
Sbjct: 34 IIYVTRVEEGGWWEGTLN---GRTGWFPSNYVRE 64
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 28.9 bits (63), Expect = 0.59
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 12/83 (14%)
Query: 88 LPSFKRKTLVLLGAHGVGRRHIKNTLI-----NKFPDKYAYPVPHTTRSPRSDEENGRAY 142
LP++K LV++G GVG K+ L F Y + + +
Sbjct: 2 LPTYK---LVVVGDGGVG----KSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAIL 54
Query: 143 YFISHDEMMSDIAANQYLEYGTH 165
+ A +
Sbjct: 55 DVLDTAGQEEFSAMREQYMRTGD 77
>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 58
Score = 27.0 bits (60), Expect = 0.61
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
I D +WW + GS GL PS
Sbjct: 24 KIINIEFVDDDWWLGELEK-DGSKGLFPS 51
>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 57
Score = 26.6 bits (59), Expect = 0.66
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ +++ + +WW R GL P+
Sbjct: 25 VVEVLDSSNPSWWTGRLH---NKLGLFPA 50
>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor
1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 28.1 bits (62), Expect = 0.69
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 34
++I K WW RKD G PS LQ+
Sbjct: 38 AVEVIHKLLDGWWVIRKD---DVTGYFPSMYLQK 68
>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 26.6 bits (59), Expect = 0.86
Identities = 5/29 (17%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ D W G G++P+
Sbjct: 27 AIINVQAIDEGWMYGTVQR-TGRTGMLPA 54
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 28.4 bits (62), Expect = 0.98
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
Query: 79 LVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEEN 138
L++ +K + ++LLG G K TL+ + + + T ++
Sbjct: 2 LLSILRKLKSAPDQEVRILLLGLDNAG----KTTLLKQLASEDISHITPTQGFNIKSVQS 57
Query: 139 GRAYYFISHDEMMSDIAANQYLEY 162
+ I +
Sbjct: 58 QGFKLNVWDIGGQRKIRPYWRSYF 81
>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 57
Score = 26.2 bits (58), Expect = 1.1
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
FQI++ + +WW+AR G G IPS
Sbjct: 24 KFQILNSSEGDWWEARS-LTTGETGYIPS 51
>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 64
Score = 26.3 bits (58), Expect = 1.2
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
QI++ + +WW A G G IPS
Sbjct: 26 RLQIVNNTEGDWWLAHS-LSTGQTGYIPS 53
>d1vk6a3 d.113.1.4 (A:0-96) NADH pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 97
Score = 26.7 bits (59), Expect = 1.7
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 1 MFQIISKDDHNWW-QARKDNVAGSAGLIPSPELQEW 35
M +II K DH WW + + + G +P E +
Sbjct: 2 MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANF 37
>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2
(GRB2), N- and C-terminal domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 25.4 bits (56), Expect = 2.0
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 4 IISKDDHNWWQARKDNVAGSAGLIPS 29
+ + D NW++A + G G IP
Sbjct: 28 LNEECDQNWYKAELN---GKDGFIPK 50
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 27.9 bits (61), Expect = 2.2
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 246 LTVVNNDIEETIGILEKAIEEL 267
LT+ + I + + I+ + +E
Sbjct: 402 LTIEDAQIRQGLEIISQCFDEA 423
Score = 27.9 bits (61), Expect = 2.2
Identities = 5/22 (22%), Positives = 12/22 (54%)
Query: 296 LTVVNNDIEETIGILEKAIEEL 317
LT+ + I + + I+ + +E
Sbjct: 402 LTIEDAQIRQGLEIISQCFDEA 423
>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN
cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 25.6 bits (56), Expect = 2.2
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 1 MFQIISKDDHNWWQARKDNVAGSAGLIPS 29
+ ++ ++ + W + + + G PS
Sbjct: 32 VLTLLIPEEKDGWLYGEHDTTKARGWFPS 60
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 27.4 bits (60), Expect = 2.4
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 246 LTVVNNDIEETIGILEKAIEEL 267
L + ++E I+ K ++
Sbjct: 382 LCITKEQLDECTEIIVKTVKFF 403
Score = 27.4 bits (60), Expect = 2.4
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 296 LTVVNNDIEETIGILEKAIEEL 317
L + ++E I+ K ++
Sbjct: 382 LCITKEQLDECTEIIVKTVKFF 403
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 26.2 bits (56), Expect = 4.4
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 7/80 (8%)
Query: 91 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEM 150
+K ++LLGA GVG K+ L F P
Sbjct: 2 YK---VLLLGAPGVG----KSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYD 54
Query: 151 MSDIAANQYLEYGTHEDAMY 170
+ + ++L
Sbjct: 55 IWEQDGGRWLPGHCMAMGDA 74
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.0 bits (56), Expect = 4.6
Identities = 25/177 (14%), Positives = 51/177 (28%), Gaps = 21/177 (11%)
Query: 94 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPHTTRSPRSDEENGRAYYFISHDEMMSD 153
K +V +G G G K+TL + + F E
Sbjct: 1 KNIVFIGFMGSG----KSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFR 56
Query: 154 IAANQYLEYGTHEDAMYGT---KLETIRRIHQEGKIAILDVEPQALKILRTGEFSPFVVF 210
+ ++ + + + + + G L + + L R
Sbjct: 57 EQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYL-KKRLD----KDEI 111
Query: 211 IAAPQLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVV--NNDIEETIGILEKAIE 265
P + + +KL E YE + + N +I+E + ++K I+
Sbjct: 112 SKRPLFYD----EIKAKKLYNERLSK---YEQKANFILNIENKNIDELLSEIKKVIK 161
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 26.0 bits (56), Expect = 4.8
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 7/30 (23%)
Query: 88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKF 117
L + K ++++G GVG K++L+ +F
Sbjct: 5 LTTLK---ILIIGESGVG----KSSLLLRF 27
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 26.4 bits (57), Expect = 5.7
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 238 SAYEHFF-DLTVVNNDIEETIGILEKAIEEL 267
S +E F L DI+ T+ + L
Sbjct: 397 SQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
Score = 26.4 bits (57), Expect = 5.7
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 288 SAYEHFF-DLTVVNNDIEETIGILEKAIEEL 317
S +E F L DI+ T+ + L
Sbjct: 397 SQFEAGFTSLAHTEEDIDATLAAARTVMSAL 427
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 24.5 bits (53), Expect = 5.9
Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)
Query: 215 QLQNLSDYDGSLEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEEL 267
+L+ L + +L A H L + I L++ L
Sbjct: 22 KLKGLVPLGPDSSRHTT-LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHL 73
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 26.2 bits (56), Expect = 6.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 246 LTVVNNDIEETIGILEKAIEE 266
LTV ++I+ + +L +AIE
Sbjct: 409 LTVSEDEIDLGLSLLGQAIER 429
Score = 26.2 bits (56), Expect = 6.1
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 296 LTVVNNDIEETIGILEKAIEE 316
LTV ++I+ + +L +AIE
Sbjct: 409 LTVSEDEIDLGLSLLGQAIER 429
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 25.8 bits (55), Expect = 6.7
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 89 PSFKRKTLVLLGAHGVGRRHIKNTLI-NKFPDKYAYPVPHTTRSPRSDEENGRAYYFISH 147
PS K LV++G GVG+ + I + F Y + + S + +
Sbjct: 3 PSETHK-LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDT 61
Query: 148 DEMMSDIAANQYLEYGTH 165
A + H
Sbjct: 62 AGQEEFGAMREQYMRAGH 79
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 26.1 bits (56), Expect = 7.5
Identities = 1/21 (4%), Positives = 10/21 (47%)
Query: 246 LTVVNNDIEETIGILEKAIEE 266
++ ++ + +A+++
Sbjct: 403 YIILPQQLQRLTAAVNRAVQD 423
Score = 26.1 bits (56), Expect = 7.5
Identities = 1/21 (4%), Positives = 10/21 (47%)
Query: 296 LTVVNNDIEETIGILEKAIEE 316
++ ++ + +A+++
Sbjct: 403 YIILPQQLQRLTAAVNRAVQD 423
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 25.6 bits (55), Expect = 8.6
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 226 LEKLAKESDILKSAYEHFFDLTVVNNDIEETIGILEKAIEELHTTPQWIPVSWLAKESDI 285
LE L++ I+ S ++ IE+ G + +L P V+ + S+
Sbjct: 250 LEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDLQQLPSDFAVNVQDESSNY 309
Query: 286 LKS 288
LK
Sbjct: 310 LKV 312
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 25.3 bits (54), Expect = 9.4
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 88 LPSFKRKTLVLLGAHGVGRRHIKNTLINKF 117
+ +K LV++GA GVG K+ L +
Sbjct: 1 MTEYK---LVVVGAGGVG----KSALTIQL 23
>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens
[TaxId: 615]}
Length = 243
Score = 25.2 bits (54), Expect = 10.0
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 5/65 (7%)
Query: 101 AHGVGRRHIKNTLINKFPDKYAYP----VPHTTRSPRSDEENGR-AYYFISHDEMMSDIA 155
A G+ N + S S+ G + ++ DIA
Sbjct: 178 ALGLSHPGDYNAGEGDPTYADVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIA 237
Query: 156 ANQYL 160
A Q+L
Sbjct: 238 AIQHL 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.402
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,329,150
Number of extensions: 63976
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 83
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)