Query psy9332
Match_columns 148
No_of_seqs 127 out of 1094
Neff 6.2
Searched_HMMs 46136
Date Sat Aug 17 00:37:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9332.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9332hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03133 TTL: Tubulin-tyrosine 99.9 3.6E-22 7.8E-27 163.7 5.0 98 1-103 186-288 (292)
2 KOG2156|consensus 99.8 4.3E-19 9.3E-24 155.8 8.3 100 1-104 422-529 (662)
3 KOG2157|consensus 99.8 6E-19 1.3E-23 155.4 7.7 106 1-107 328-433 (497)
4 KOG2158|consensus 99.2 3.7E-12 8E-17 111.2 3.2 83 3-86 344-437 (565)
5 PF14398 ATPgrasp_YheCD: YheC/ 98.9 8.1E-09 1.8E-13 84.6 9.9 75 22-99 183-258 (262)
6 PF07478 Dala_Dala_lig_C: D-al 98.2 1.2E-05 2.6E-10 63.6 8.7 57 22-86 130-186 (203)
7 PRK14570 D-alanyl-alanine synt 98.1 2.1E-05 4.6E-10 67.3 8.5 72 23-102 271-349 (364)
8 COG1181 DdlA D-alanine-D-alani 98.0 2.2E-05 4.7E-10 66.4 7.7 58 21-86 239-297 (317)
9 PRK14568 vanB D-alanine--D-lac 98.0 4.5E-05 9.8E-10 64.3 9.0 69 23-99 266-340 (343)
10 PRK01966 ddl D-alanyl-alanine 97.9 8E-05 1.7E-09 62.5 8.9 55 23-85 257-311 (333)
11 PRK14569 D-alanyl-alanine synt 97.9 0.0001 2.3E-09 60.9 9.1 67 23-97 221-293 (296)
12 PRK14572 D-alanyl-alanine synt 97.7 0.0002 4.3E-09 60.5 8.8 68 22-98 271-344 (347)
13 PRK14571 D-alanyl-alanine synt 97.7 0.00025 5.4E-09 58.4 8.9 55 23-86 222-276 (299)
14 TIGR01205 D_ala_D_alaTIGR D-al 97.6 0.00038 8.3E-09 57.1 9.1 54 22-83 240-293 (315)
15 TIGR02291 rimK_rel_E_lig alpha 97.6 0.00015 3.2E-09 61.5 6.4 46 24-78 228-273 (317)
16 PRK01372 ddl D-alanine--D-alan 97.6 0.00046 9.9E-09 56.5 8.8 53 23-83 226-278 (304)
17 PRK14573 bifunctional D-alanyl 97.6 0.00035 7.6E-09 65.2 8.6 72 22-101 711-788 (809)
18 PRK10446 ribosomal protein S6 97.3 0.00061 1.3E-08 56.2 6.5 47 24-80 224-270 (300)
19 TIGR00768 rimK_fam alpha-L-glu 97.2 0.00067 1.4E-08 54.2 5.4 47 25-80 215-261 (277)
20 PF02655 ATP-grasp_3: ATP-gras 96.9 0.0018 4E-08 48.9 4.9 27 49-76 133-159 (161)
21 TIGR02144 LysX_arch Lysine bio 96.9 0.0031 6.7E-08 50.8 6.3 46 25-79 213-258 (280)
22 PLN02257 phosphoribosylamine-- 96.6 0.0082 1.8E-07 52.6 7.5 53 49-101 263-316 (434)
23 PRK13789 phosphoribosylamine-- 96.6 0.0049 1.1E-07 53.8 6.1 77 23-101 245-321 (426)
24 PF08443 RimK: RimK-like ATP-g 96.6 0.0041 8.8E-08 48.2 5.0 48 23-80 127-174 (190)
25 PF14397 ATPgrasp_ST: Sugar-tr 96.4 0.011 2.4E-07 49.1 6.5 47 25-80 217-265 (285)
26 PF13535 ATP-grasp_4: ATP-gras 96.0 0.018 3.9E-07 42.8 5.5 44 25-76 136-180 (184)
27 TIGR03103 trio_acet_GNAT GNAT- 95.9 0.017 3.7E-07 52.1 5.7 53 20-81 474-528 (547)
28 TIGR01161 purK phosphoribosyla 95.7 0.053 1.1E-06 45.6 7.6 48 23-78 221-268 (352)
29 PLN02948 phosphoribosylaminoim 94.8 0.098 2.1E-06 47.6 6.9 69 23-100 246-314 (577)
30 PLN02941 inositol-tetrakisphos 94.6 0.078 1.7E-06 45.2 5.5 34 51-84 278-313 (328)
31 PRK06524 biotin carboxylase-li 94.4 0.13 2.7E-06 46.3 6.7 51 23-78 275-326 (493)
32 COG0189 RimK Glutathione synth 94.2 0.29 6.3E-06 41.4 8.2 46 24-79 248-293 (318)
33 TIGR00877 purD phosphoribosyla 94.2 0.2 4.4E-06 42.9 7.4 51 50-101 266-316 (423)
34 PRK06019 phosphoribosylaminoim 94.1 0.15 3.3E-06 43.4 6.2 48 23-78 223-270 (372)
35 TIGR01142 purT phosphoribosylg 94.0 0.18 3.9E-06 42.4 6.6 48 23-79 229-276 (380)
36 PRK06111 acetyl-CoA carboxylas 93.9 0.17 3.6E-06 43.7 6.3 47 23-77 249-295 (450)
37 PRK06849 hypothetical protein; 93.9 0.16 3.4E-06 43.3 5.9 27 50-76 251-277 (389)
38 TIGR00514 accC acetyl-CoA carb 93.8 0.23 4.9E-06 43.3 7.0 48 23-78 249-296 (449)
39 PRK13790 phosphoribosylamine-- 93.8 0.21 4.6E-06 42.7 6.7 51 23-77 201-252 (379)
40 KOG2158|consensus 93.8 0.019 4E-07 51.3 0.2 59 48-107 12-70 (565)
41 KOG2155|consensus 93.8 0.086 1.9E-06 47.1 4.2 72 23-94 537-617 (631)
42 PRK12767 carbamoyl phosphate s 93.5 0.31 6.8E-06 40.0 7.0 27 49-76 245-271 (326)
43 PRK06395 phosphoribosylamine-- 93.4 0.3 6.5E-06 42.8 7.0 75 23-101 245-319 (435)
44 PRK08591 acetyl-CoA carboxylas 93.4 0.28 6.2E-06 42.5 6.8 49 22-78 248-296 (451)
45 PRK09288 purT phosphoribosylgl 93.4 0.25 5.4E-06 41.8 6.4 47 23-78 242-288 (395)
46 PRK00885 phosphoribosylamine-- 93.1 0.37 8E-06 41.5 7.1 75 23-101 239-314 (420)
47 PRK05586 biotin carboxylase; V 93.1 0.32 7E-06 42.3 6.8 48 23-78 249-296 (447)
48 TIGR01435 glu_cys_lig_rel glut 93.0 0.19 4.2E-06 47.2 5.4 53 19-80 657-717 (737)
49 COG1821 Predicted ATP-utilizin 92.8 0.25 5.5E-06 41.3 5.3 51 48-100 231-284 (307)
50 PRK08462 biotin carboxylase; V 92.7 0.31 6.8E-06 42.2 6.2 48 23-78 251-298 (445)
51 PRK07178 pyruvate carboxylase 92.3 0.47 1E-05 41.8 6.8 48 23-78 248-295 (472)
52 PLN02735 carbamoyl-phosphate s 92.1 0.38 8.1E-06 47.1 6.3 47 23-77 832-878 (1102)
53 PF05770 Ins134_P3_kin: Inosit 91.9 0.34 7.3E-06 41.1 5.1 39 50-88 262-302 (307)
54 PF01071 GARS_A: Phosphoribosy 91.5 0.54 1.2E-05 37.3 5.7 51 22-76 139-190 (194)
55 PRK12833 acetyl-CoA carboxylas 91.4 0.62 1.3E-05 41.0 6.4 48 23-78 251-299 (467)
56 PRK08463 acetyl-CoA carboxylas 91.3 0.64 1.4E-05 41.1 6.5 49 22-78 248-296 (478)
57 PF15632 ATPgrasp_Ter: ATP-gra 91.1 0.22 4.8E-06 42.5 3.3 30 49-78 255-284 (329)
58 PRK14016 cyanophycin synthetas 90.6 0.6 1.3E-05 43.6 5.9 65 22-95 397-471 (727)
59 PRK13278 purP 5-formaminoimida 90.4 0.76 1.6E-05 39.6 6.0 52 22-75 261-312 (358)
60 PRK07206 hypothetical protein; 89.9 0.87 1.9E-05 38.9 6.0 46 24-77 245-290 (416)
61 TIGR01235 pyruv_carbox pyruvat 89.8 0.95 2.1E-05 44.6 6.7 48 23-78 249-296 (1143)
62 PRK05784 phosphoribosylamine-- 88.9 1.2 2.6E-05 39.8 6.2 75 23-100 260-335 (486)
63 TIGR02068 cya_phycin_syn cyano 88.6 0.59 1.3E-05 44.5 4.3 51 21-80 395-451 (864)
64 PLN02735 carbamoyl-phosphate s 88.4 1.3 2.9E-05 43.4 6.6 48 22-77 274-323 (1102)
65 PRK02471 bifunctional glutamat 87.7 0.65 1.4E-05 43.7 3.9 52 20-80 672-731 (752)
66 PF04174 CP_ATPgrasp_1: A circ 86.8 0.64 1.4E-05 39.8 3.1 27 49-75 66-92 (330)
67 PRK05294 carB carbamoyl phosph 86.3 2 4.4E-05 41.8 6.5 46 23-77 798-843 (1066)
68 PRK08654 pyruvate carboxylase 85.3 3.1 6.7E-05 37.2 6.8 48 23-79 249-296 (499)
69 TIGR01369 CPSaseII_lrg carbamo 84.0 2.8 6E-05 40.8 6.3 46 23-77 798-843 (1050)
70 PRK12999 pyruvate carboxylase; 83.1 3.9 8.5E-05 40.4 6.9 48 23-78 253-300 (1146)
71 PRK13277 5-formaminoimidazole- 81.7 4.5 9.9E-05 35.2 6.1 50 22-73 268-317 (366)
72 PRK05246 glutathione synthetas 81.3 2.9 6.4E-05 34.8 4.8 19 53-76 269-288 (316)
73 PRK12815 carB carbamoyl phosph 79.4 5.4 0.00012 39.0 6.5 47 23-77 258-305 (1068)
74 PRK12815 carB carbamoyl phosph 79.0 5.8 0.00013 38.8 6.5 47 23-78 796-842 (1068)
75 PF02750 Synapsin_C: Synapsin, 78.1 4 8.7E-05 32.8 4.3 46 49-94 152-199 (203)
76 PRK05294 carB carbamoyl phosph 78.1 6.7 0.00014 38.3 6.6 49 23-78 258-307 (1066)
77 PRK02186 argininosuccinate lya 77.5 6.7 0.00014 37.4 6.4 46 23-76 233-278 (887)
78 COG4770 Acetyl/propionyl-CoA c 77.2 19 0.00042 33.4 8.8 76 22-107 248-324 (645)
79 PF02786 CPSase_L_D2: Carbamoy 77.1 10 0.00022 30.1 6.4 69 22-100 134-204 (211)
80 TIGR01369 CPSaseII_lrg carbamo 76.8 7.7 0.00017 37.8 6.7 49 23-79 257-306 (1050)
81 TIGR02712 urea_carbox urea car 74.0 10 0.00022 37.8 6.7 48 23-78 247-295 (1201)
82 PHA02117 glutathionylspermidin 73.1 3.6 7.8E-05 36.1 3.1 25 49-73 103-128 (397)
83 PRK12458 glutathione synthetas 73.0 8.2 0.00018 32.7 5.2 43 25-78 259-303 (338)
84 PF07065 D123: D123; InterPro 71.4 11 0.00025 31.7 5.7 23 54-76 217-240 (299)
85 COG0151 PurD Phosphoribosylami 70.9 18 0.0004 32.1 7.0 75 22-100 239-314 (428)
86 COG2232 Predicted ATP-dependen 69.8 3.6 7.8E-05 35.7 2.3 23 53-76 253-275 (389)
87 PF14243 DUF4343: Domain of un 60.0 11 0.00025 27.7 3.1 27 50-76 91-117 (130)
88 COG0754 Gsp Glutathionylspermi 59.8 9.2 0.0002 33.4 2.9 27 48-74 93-120 (387)
89 PF04556 DpnII: DpnII restrict 58.3 8.3 0.00018 32.5 2.4 23 54-76 196-218 (286)
90 PF02222 ATP-grasp: ATP-grasp 56.1 61 0.0013 24.9 6.8 48 23-78 116-164 (172)
91 PF13020 DUF3883: Domain of un 50.7 14 0.00031 25.0 2.2 23 53-75 28-51 (91)
92 PF02955 GSH-S_ATP: Prokaryoti 50.3 12 0.00025 29.1 1.9 26 41-73 135-160 (173)
93 PF13635 DUF4143: Domain of un 50.2 15 0.00033 24.8 2.3 19 55-73 71-89 (90)
94 TIGR01380 glut_syn glutathione 45.8 17 0.00038 30.2 2.4 22 51-77 266-289 (312)
95 KOG2983|consensus 45.7 74 0.0016 27.1 6.0 23 54-76 231-253 (334)
96 COG0439 AccC Biotin carboxylas 38.6 2.2E+02 0.0047 25.6 8.2 46 56-103 274-320 (449)
97 COG1489 SfsA DNA-binding prote 37.8 39 0.00084 27.8 3.2 30 56-85 116-152 (235)
98 COG0458 CarB Carbamoylphosphat 36.7 32 0.0007 30.3 2.8 25 56-80 270-295 (400)
99 PF07494 Reg_prop: Two compone 36.5 38 0.00083 17.4 2.0 13 56-68 8-20 (24)
100 PF03749 SfsA: Sugar fermentat 33.2 42 0.00091 26.9 2.7 20 55-74 105-124 (215)
101 PRK10507 bifunctional glutathi 32.9 42 0.00092 31.2 3.0 27 49-76 309-337 (619)
102 KOG0238|consensus 32.6 71 0.0015 29.6 4.3 48 56-105 270-318 (670)
103 PF04471 Mrr_cat: Restriction 31.6 1.2E+02 0.0027 20.1 4.6 62 27-94 7-72 (115)
104 COG2308 Uncharacterized conser 31.3 64 0.0014 29.1 3.7 33 47-79 141-174 (488)
105 TIGR00372 cas4 CRISPR-associat 29.6 1.2E+02 0.0025 22.4 4.5 31 48-78 62-93 (178)
106 PRK05883 acyl carrier protein; 29.4 56 0.0012 22.4 2.5 36 22-57 12-47 (91)
107 cd00228 eu-GS Eukaryotic Gluta 29.2 1.6E+02 0.0035 26.6 5.9 44 47-90 112-159 (471)
108 PF06319 DUF1052: Protein of u 28.3 50 0.0011 25.5 2.3 26 56-81 51-78 (157)
109 KOG3895|consensus 26.4 1.2E+02 0.0026 26.9 4.5 54 48-101 334-395 (488)
110 PHA02762 hypothetical protein; 25.8 77 0.0017 20.4 2.4 22 57-78 2-23 (62)
111 PF08972 DUF1902: Domain of un 25.1 1.9E+02 0.0041 18.4 4.8 45 56-100 3-50 (54)
112 COG5321 Uncharacterized protei 25.0 59 0.0013 24.8 2.1 75 24-105 23-99 (164)
113 KOG2870|consensus 24.0 1E+02 0.0023 27.0 3.6 76 23-100 358-441 (452)
114 PF03917 GSH_synth_ATP: Eukary 23.5 1.8E+02 0.0039 25.3 5.1 26 48-73 117-145 (370)
115 PHA00691 hypothetical protein 22.3 52 0.0011 21.5 1.2 11 61-71 10-20 (68)
116 PLN02977 glutathione synthetas 20.7 3.8E+02 0.0083 24.3 6.7 46 47-92 121-168 (478)
117 PF14005 YpjP: YpjP-like prote 20.2 1.4E+02 0.003 22.6 3.2 23 18-40 33-55 (136)
118 PRK12449 acyl carrier protein; 20.1 77 0.0017 20.6 1.7 35 23-57 4-38 (80)
No 1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=99.85 E-value=3.6e-22 Score=163.73 Aligned_cols=98 Identities=36% Similarity=0.621 Sum_probs=75.3
Q ss_pred CccHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHc-----hhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCC
Q psy9332 1 MRLLKQIISHSSQVYPRGKDITNKLFTNISWLIVHSLKSV-----SYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASP 75 (148)
Q Consensus 1 ~~~l~q~~~~L~~~~~~G~d~~~~i~~~i~~ii~~t~~a~-----~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P 75 (148)
+|++.+|.+|+.. |.++ +.+|++|..++++++.++ ...+..+.+|||+||+|||||++++|||||||++|
T Consensus 186 ~~~~~~~~~~l~~----~~~~-~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~Fel~G~DfmlD~~~kpwLLEvN~~P 260 (292)
T PF03133_consen 186 KWSLDQFEEYLKE----GIDW-EKIWEKICDIIIKTILAAEFRSSQPNMPPRPNCFELFGFDFMLDEDLKPWLLEVNSNP 260 (292)
T ss_dssp EHHHHHHHCTTTS----SS-S-TTTCHHHHHHHHHHHHHH-HHHHH--TTSSSEE-EEEEEEEEEBTTS-EEEEEEESS-
T ss_pred cchhhhhhhhccc----CCCc-ccchhhhhHHHHHHhhhhhhhhccccccccccccceeeeEEEecCCCeEEEeeCCCCC
Confidence 5788999988854 5665 789999999999999888 34555678999999999999999999999999999
Q ss_pred CCCcCCcchHHHHHHHHHHHHhhccccc
Q psy9332 76 SLTCTTVNDRILKYKLIDNILNIVMWNK 103 (148)
Q Consensus 76 ~l~~~~~~~~~lk~~ll~d~l~lv~~~~ 103 (148)
+++.+++.+..++++|++|+++++.++.
T Consensus 261 sl~~~~~~~~~~~~~li~d~l~i~v~~~ 288 (292)
T PF03133_consen 261 SLSTSTPVDKELKPQLIDDLLKIVVDPD 288 (292)
T ss_dssp -----TTTHHHHHHHHHHHTTTTTS---
T ss_pred CcccCCHhHHHHHHHHHHHHhEEEeCCC
Confidence 9999999999999999999999888654
No 2
>KOG2156|consensus
Probab=99.78 E-value=4.3e-19 Score=155.81 Aligned_cols=100 Identities=36% Similarity=0.560 Sum_probs=90.0
Q ss_pred CccHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHchhhhc--------CCCCcceeeeeeEEEeCCCCcEEEeec
Q psy9332 1 MRLLKQIISHSSQVYPRGKDITNKLFTNISWLIVHSLKSVSYIMA--------NDKHCFECYGYDIIIDNQLKPWLIEVN 72 (148)
Q Consensus 1 ~~~l~q~~~~L~~~~~~G~d~~~~i~~~i~~ii~~t~~a~~~~l~--------~~~~~FEl~G~D~~iD~~~kpwLLEVN 72 (148)
||+++.+=.|++ .+|+| +++||++|+.+|++||+|.++.+. ....|||||||||++|++++|||+|||
T Consensus 422 kwtl~~lw~~l~---~qGvd-t~kIW~qir~iV~kti~s~E~~i~~~lr~~~~~~~~CfELfgFDiilDedLkpwLlEVN 497 (662)
T KOG2156|consen 422 KWTLKSLWLYLD---NQGVD-TDKIWEQIRNIVIKTIISGEKGINSMLRNYVENPYSCFELFGFDIILDEDLKPWLLEVN 497 (662)
T ss_pred hhhHHHHHHHHH---hcCCC-HHHHHHHHHHHHHHHhhccChhHHHHHHHHhcCCchhhhhhcceEEecCccceeeEEEe
Confidence 577877777775 46999 499999999999999999887654 457899999999999999999999999
Q ss_pred cCCCCCcCCcchHHHHHHHHHHHHhhcccccC
Q psy9332 73 ASPSLTCTTVNDRILKYKLIDNILNIVMWNKY 104 (148)
Q Consensus 73 ~~P~l~~~~~~~~~lk~~ll~d~l~lv~~~~~ 104 (148)
.+|++++.++.+-.+|.+|+.+.+++++....
T Consensus 498 ISPSLhS~tpld~~vk~~li~~vlNlagi~~p 529 (662)
T KOG2156|consen 498 ISPSLHSETPLDCSVKAPLIQDVLNLAGIKVP 529 (662)
T ss_pred cccccccCCCccchhhhHHHHHHHHhcceecC
Confidence 99999999999999999999999999997655
No 3
>KOG2157|consensus
Probab=99.77 E-value=6e-19 Score=155.41 Aligned_cols=106 Identities=36% Similarity=0.472 Sum_probs=96.2
Q ss_pred CccHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcC
Q psy9332 1 MRLLKQIISHSSQVYPRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 80 (148)
Q Consensus 1 ~~~l~q~~~~L~~~~~~G~d~~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~ 80 (148)
||++.+|..||.... .+..+....++.|...|+.++.++.+.+....+|||+||+|||+|++++|||||||++|+++.+
T Consensus 328 ~w~~~~~~~yl~~~~-~~~~~~~~~i~~~~~~iv~~v~~s~~~~~~~~n~FElyG~DfliD~~lkpwLiEiNssP~~~~t 406 (497)
T KOG2157|consen 328 KWTLNSLLLYLRNIG-SPCLELKLQIKPIITGIVLSVFASATTVPSLANCFELYGFDFLIDEALKPWLIEINASPDLTQT 406 (497)
T ss_pred cccHHHHHHHHHhhc-CCcccccccchhhhhhhhhhhhhhccccccccchhhhhCcceeecCCCCeEEEEeecCCccccc
Confidence 799999999998744 3444557899999999999999999999989999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhcccccCCCC
Q psy9332 81 TVNDRILKYKLIDNILNIVMWNKYKKA 107 (148)
Q Consensus 81 ~~~~~~lk~~ll~d~l~lv~~~~~~~~ 107 (148)
+..+..+|..++.|++++|.++...+.
T Consensus 407 ~~~d~~l~~~l~~d~l~~v~~~~~~~~ 433 (497)
T KOG2157|consen 407 TKNDARLKSKLIDDVLKVVVDPRLDPN 433 (497)
T ss_pred chhhhHHHHHHHHHhhccccCcccccc
Confidence 999999999999999999998765543
No 4
>KOG2158|consensus
Probab=99.24 E-value=3.7e-12 Score=111.19 Aligned_cols=83 Identities=25% Similarity=0.411 Sum_probs=73.8
Q ss_pred cHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHchhhhcC-----------CCCcceeeeeeEEEeCCCCcEEEee
Q psy9332 3 LLKQIISHSSQVYPRGKDITNKLFTNISWLIVHSLKSVSYIMAN-----------DKHCFECYGYDIIIDNQLKPWLIEV 71 (148)
Q Consensus 3 ~l~q~~~~L~~~~~~G~d~~~~i~~~i~~ii~~t~~a~~~~l~~-----------~~~~FEl~G~D~~iD~~~kpwLLEV 71 (148)
|.-||+..+.++...|+|. ..+|.+|+.++++|.+|..|.+.. ...||+++|||++++.++.|.|+||
T Consensus 344 SkR~Lsti~~ql~s~gvdt-k~vwsDik~v~iktvlA~~peLk~~y~~~fp~h~tgpacfqi~gfDi~~~~k~~pillev 422 (565)
T KOG2158|consen 344 SKRQLSTINEQLDSLGVDT-KFVWSDIKIVFIKTVLAESPELKEDYIDNFPYHKTGPACFQIIGFDIVKQRKVLPILLEV 422 (565)
T ss_pred hhHHHHHHHHHHHhcCchH-HHHHhhhhhhhcchhhhcCHHHHHHHHHhCCCCCcCCceEEEeccchhhccccchHHHHh
Confidence 5678888888888999995 999999999999999999998762 4689999999999999999999999
Q ss_pred ccCCCCCcCCcchHH
Q psy9332 72 NASPSLTCTTVNDRI 86 (148)
Q Consensus 72 N~~P~l~~~~~~~~~ 86 (148)
|.+|++.....++.+
T Consensus 423 nrapslr~~~~vd~e 437 (565)
T KOG2158|consen 423 NRAPSLRIWKVVDVE 437 (565)
T ss_pred cccccccccccCCCc
Confidence 999999988755443
No 5
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=98.93 E-value=8.1e-09 Score=84.58 Aligned_cols=75 Identities=25% Similarity=0.260 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcc-hHHHHHHHHHHHHhhc
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVN-DRILKYKLIDNILNIV 99 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~-~~~lk~~ll~d~l~lv 99 (148)
...+..+|++++..+..++...+.. ++.| +|+||.||.+|++||||||+.|+....... +.++..+++...++.+
T Consensus 183 ~~~~~~~l~~~a~~ia~~le~~~~~--~~gE-lGiDl~iD~~g~iWliEvN~kP~~~~~~~~~~~~~~~~~~~~pl~Ya 258 (262)
T PF14398_consen 183 AEKIREELEDLALEIAQALEKHFGG--HLGE-LGIDLGIDKNGKIWLIEVNSKPGKFDFRDIGDKELIRQSYRRPLEYA 258 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--ceeE-EEEEEEEcCCCCEEEEEEeCCCCcchhhcccchHHHHHHHHHHHHHH
Confidence 3678888888887775554444432 2555 999999999999999999999998887765 5667777777766543
No 6
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=98.17 E-value=1.2e-05 Score=63.63 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRI 86 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~ 86 (148)
.+.+..+|++++.+++.+ -+|-..-.+||.+|++++||++|||+.|+|+..+.+.+.
T Consensus 130 ~~~~~~~i~~~a~~a~~~--------lg~~~~~RiD~rv~~~g~~~~lEiNt~PGlt~~S~~p~~ 186 (203)
T PF07478_consen 130 SEELQEKIKEIAKKAFKA--------LGCRGYARIDFRVDEDGKPYFLEINTIPGLTPTSLFPRM 186 (203)
T ss_dssp -HHHHHHHHHHHHHHHHH--------TTTCSEEEEEEEEETTTEEEEEEEESS-G-STTSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH--------HcCCCceeEEEEeccCCceEEEeccCcccccCCCHHHHH
Confidence 357888888888888655 256665669999999999999999999999988766443
No 7
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=98.05 E-value=2.1e-05 Score=67.32 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC-CCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNI 95 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~-~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~ 95 (148)
+.+..+|++++.+++.+ -+|-.+..+||++|. +++||++|||+.|+|+..+.+.+.. ...|++.+
T Consensus 271 ~e~~~~i~~~A~~~~~a--------Lg~~G~~RvDf~l~~~~g~~yvlEiNt~PG~t~~S~~p~~~~~~G~~~~~li~~l 342 (364)
T PRK14570 271 TKHLLDIKEYAFLTYKN--------LELRGMARIDFLIEKDTGLIYLNEINTIPGFTDISMFAKMCEHDGLQYKSLVDNL 342 (364)
T ss_pred HHHHHHHHHHHHHHHHH--------hCCcceEEEEEEEECCCCcEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 56677888888777655 267787889999996 5999999999999999987665443 36677777
Q ss_pred Hhhcccc
Q psy9332 96 LNIVMWN 102 (148)
Q Consensus 96 l~lv~~~ 102 (148)
++....+
T Consensus 343 i~~a~~r 349 (364)
T PRK14570 343 IDLAFQS 349 (364)
T ss_pred HHHHHHH
Confidence 7766643
No 8
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=98.01 E-value=2.2e-05 Score=66.37 Aligned_cols=58 Identities=22% Similarity=0.420 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC-CCCcEEEeeccCCCCCcCCcchHH
Q psy9332 21 ITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLTCTTVNDRI 86 (148)
Q Consensus 21 ~~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~-~~kpwLLEVN~~P~l~~~~~~~~~ 86 (148)
.++.+.++|+++..++.++. +|-.+-|+||++|+ .+++||+|||++|+|...+.+.+.
T Consensus 239 lt~~~~~~i~~lA~~a~~al--------g~~g~~rvDf~~~~~~g~~~l~EvNt~PG~t~~sl~P~~ 297 (317)
T COG1181 239 LTDEIHEEIKELALRAYKAL--------GCLGLARVDFFVDDDEGEFVLLEVNTNPGMTAMSLFPKA 297 (317)
T ss_pred CCHHHHHHHHHHHHHHHHhc--------CCCceEEEEEEEECCCCCEEEEEEeCCCCCcccccchhh
Confidence 56889999999999998773 67788899999999 899999999999999888765443
No 9
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.97 E-value=4.5e-05 Score=64.26 Aligned_cols=69 Identities=17% Similarity=0.229 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHHH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNIL 96 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~l 96 (148)
+.+..+|++++.+++.+. +|..+.++||++|+++++|++|||+.|+|+..+.+.+.. .+.+++.++
T Consensus 266 ~~~~~~i~~~a~~~~~~L--------g~~G~~rvDf~l~~~g~~~llEINt~Pg~t~~S~~p~~~~~~G~~~~~l~~~li 337 (343)
T PRK14568 266 AEERSRVQETAKAIYRAL--------GCRGLARVDMFLQEDGTVVLNEVNTLPGFTSYSRYPRMMAAAGIPLAELIDRLV 337 (343)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCcEEEEEEEEeCCCCEEEEEeeCCCCCCccCHHHHHHHHcCCCHHHHHHHHH
Confidence 356667777776665543 356778899999999999999999999999877554332 245555555
Q ss_pred hhc
Q psy9332 97 NIV 99 (148)
Q Consensus 97 ~lv 99 (148)
++.
T Consensus 338 ~~a 340 (343)
T PRK14568 338 SLA 340 (343)
T ss_pred HHH
Confidence 443
No 10
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.88 E-value=8e-05 Score=62.52 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDR 85 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~ 85 (148)
+.+..+|++++.+++.+. +|-...++||++|.++++|++|||+.|+|+..+-+.+
T Consensus 257 ~~~~~~i~~~a~~~~~aL--------g~~G~~rvDf~~~~~g~~~vlEiNt~Pg~t~~s~~p~ 311 (333)
T PRK01966 257 EELTEKIRELAIKAFKAL--------GCSGLARVDFFLTEDGEIYLNEINTMPGFTPISMYPK 311 (333)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCcceEEEEEEEcCCCCEEEEEeeCCCCCCcccHHHH
Confidence 466777777777776552 3446688999999999999999999999998765443
No 11
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=97.86 E-value=0.0001 Score=60.88 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHHH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNIL 96 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~l 96 (148)
+.+..++++++.+++.+. +|-...++||++|++++||++|||+.|+|+.++.+.... .++|+..++
T Consensus 221 ~~~~~~i~~~a~~~~~~L--------g~~G~~rvD~~~~~~g~~~vlEIN~~Pg~t~~s~~~~~~~~~G~~~~~li~~ii 292 (296)
T PRK14569 221 EQKELEVRQLAKKAYDLL--------GCSGHARVDFIYDDRGNFYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRII 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCCcCHHHHHHHHcCCCHHHHHHHHH
Confidence 345566666666665442 355778899999999999999999999999877544333 345555444
Q ss_pred h
Q psy9332 97 N 97 (148)
Q Consensus 97 ~ 97 (148)
+
T Consensus 293 ~ 293 (296)
T PRK14569 293 E 293 (296)
T ss_pred H
Confidence 3
No 12
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.72 E-value=0.0002 Score=60.53 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNI 95 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~ 95 (148)
.+.+..+|++++.+++.+. +|-...++||+++ ++.||++|||+.|+|+.++.+.... ..+|++.+
T Consensus 271 ~~~~~~~i~~~a~~~~~~L--------g~~G~~rvD~~~~-~~~~~vlEiNt~PG~t~~S~~p~~~~~~G~~~~~l~~~i 341 (347)
T PRK14572 271 SDQEMKRVQELAIRAHESL--------GCKGYSRTDFIIV-DGEPHILETNTLPGMTETSLIPQQAKAAGINMEEVFTDL 341 (347)
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCcceeEEEEEEE-CCcEEEEeeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 3567778888877776553 3667788999998 5899999999999999887554432 24555555
Q ss_pred Hhh
Q psy9332 96 LNI 98 (148)
Q Consensus 96 l~l 98 (148)
++.
T Consensus 342 i~~ 344 (347)
T PRK14572 342 IEI 344 (347)
T ss_pred HHH
Confidence 544
No 13
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=97.70 E-value=0.00025 Score=58.36 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRI 86 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~ 86 (148)
+.+..+|++++.+++.+ + +|....++||+++ +++||++|||+.|+|+..+.+...
T Consensus 222 ~~~~~~i~~~a~~~~~~----l----g~~g~~rvD~~~~-~~~~~viEiN~~Pg~~~~s~~~~~ 276 (299)
T PRK14571 222 PEEERLVKETALKAFVE----A----GCRGFGRVDGIFS-DGRFYFLEINTVPGLTELSDLPAS 276 (299)
T ss_pred HHHHHHHHHHHHHHHHH----h----CCCceEEEEEEEE-CCcEEEEEeeCCCCCCccCHHHHH
Confidence 45667777776666543 2 3456789999998 579999999999999987755433
No 14
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=97.64 E-value=0.00038 Score=57.13 Aligned_cols=54 Identities=22% Similarity=0.351 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcc
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVN 83 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~ 83 (148)
.+.+..+|++++.+++.+.. +...+++||++|.++++|++|||+.|++...+.+
T Consensus 240 ~~~~~~~i~~~a~~~~~~lg--------~~G~~~vD~~~~~~g~~~viEvN~~pg~~~~s~~ 293 (315)
T TIGR01205 240 DEELEEKIKELALKAYKALG--------CRGLARVDFFLDEEGEIYLNEINTIPGMTAISLF 293 (315)
T ss_pred CHHHHHHHHHHHHHHHHHhC--------CCceEEEEEEEeCCCCEEEEEeeCCCCCCCccHH
Confidence 34667777777777765532 3356889999999999999999999999987643
No 15
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=97.61 E-value=0.00015 Score=61.49 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 24 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 24 ~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
..|+.+.+++.++..+ .+| .++|+|+++|.++.||+||||+.|+|+
T Consensus 228 p~~~el~~la~~A~~~--------~g~-~~~GvDii~~~~~g~~VlEVN~~Pg~t 273 (317)
T TIGR02291 228 PHWERLLELAASCWEL--------TGL-GYMGVDMVLDKEEGPLVLELNARPGLA 273 (317)
T ss_pred hhHHHHHHHHHHHHHh--------cCC-CeEEEEEEEeCCCCEEEEEeCCCCCCC
Confidence 5788888887777543 245 679999999988999999999999998
No 16
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=97.59 E-value=0.00046 Score=56.51 Aligned_cols=53 Identities=23% Similarity=0.453 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVN 83 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~ 83 (148)
+.+..+|++++.+.+.+. ++-...++||++|++|+++++|||+.|++...+.+
T Consensus 226 ~~~~~~l~~~a~~~~~~l--------g~~g~~~iD~~~~~~g~~~viEvN~~p~~~~~~~~ 278 (304)
T PRK01372 226 AEIEAELQELALKAYRAL--------GCRGWGRVDFMLDEDGKPYLLEVNTQPGMTSHSLV 278 (304)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCcceEEEEEEEcCCCCEEEEEecCCCCCCcccHH
Confidence 456677777766665443 23345689999999999999999999999876533
No 17
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.55 E-value=0.00035 Score=65.19 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNI 95 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~ 95 (148)
.+.+..+|++++.+++.+. +|-.+..+||++|+++++|++|||+.|+|+..+.+.+.. .++|++.+
T Consensus 711 ~~~~~~~i~~~a~~~~~aL--------g~~G~~riDf~v~~~g~~yv~EiNt~PG~t~~s~~p~~~~~~G~~~~~li~~i 782 (809)
T PRK14573 711 SKESQEQVLELAERIYRLL--------QGKGSCRIDFFLDEEGNFWLSEMNPIPGMTEASPFLTAFVRKGWTYEQIVHQL 782 (809)
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCceEEEEEEEEcCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHH
Confidence 3567788888888776653 477888899999999999999999999999887554432 35566666
Q ss_pred Hhhccc
Q psy9332 96 LNIVMW 101 (148)
Q Consensus 96 l~lv~~ 101 (148)
++....
T Consensus 783 i~~a~~ 788 (809)
T PRK14573 783 IIDGLH 788 (809)
T ss_pred HHHHHH
Confidence 655553
No 18
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=97.32 E-value=0.00061 Score=56.20 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcC
Q psy9332 24 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 80 (148)
Q Consensus 24 ~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~ 80 (148)
.+-+.+++++.++..+. +|. +.|+||+.|+++ +|++|||++|++...
T Consensus 224 ~l~~~~~~~a~~a~~al--------g~~-~~gvD~~~~~~g-~~vlEvN~~pg~~~~ 270 (300)
T PRK10446 224 SITPQEREIAIKAARTM--------ALD-VAGVDILRANRG-PLVMEVNASPGLEGI 270 (300)
T ss_pred CCCHHHHHHHHHHHHHh--------CCC-EEEEEEEEcCCC-cEEEEEECCCChhhh
Confidence 45666777777665554 344 789999999888 999999999998643
No 19
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.22 E-value=0.00067 Score=54.16 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcC
Q psy9332 25 LFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 80 (148)
Q Consensus 25 i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~ 80 (148)
+-+++++++.++..+. . + ..+|+||++|.++.+|++|||..|++...
T Consensus 215 l~~~~~~~a~~~~~~l----~----~-~~~~vD~~~~~~g~~~viEiN~~p~~~~~ 261 (277)
T TIGR00768 215 LTEEIEELAIKAAKAL----G----L-DVVGIDLLESEDRGLLVNEVNPNPEFKNS 261 (277)
T ss_pred CCHHHHHHHHHHHHHh----C----C-CeEEEEEEEcCCCCeEEEEEcCCcchhhh
Confidence 3455666665554433 2 2 35799999999999999999999997643
No 20
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=96.89 E-value=0.0018 Score=48.95 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=21.1
Q ss_pred CcceeeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 49 HCFECYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 49 ~~FEl~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
++..++|+||++++ ..+|+||||..|+
T Consensus 133 gl~G~~giD~I~~~-~~~~viEINPR~t 159 (161)
T PF02655_consen 133 GLRGYVGIDFILDD-GGPYVIEINPRFT 159 (161)
T ss_dssp T--EEEEEEEEESS--SEEEEEEESS--
T ss_pred CCeeeEeEEEEEeC-CcEEEEEEcCCCC
Confidence 88899999999999 9999999999875
No 21
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=96.86 E-value=0.0031 Score=50.83 Aligned_cols=46 Identities=22% Similarity=0.184 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCc
Q psy9332 25 LFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 25 i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~ 79 (148)
+-+.+.+++.+++.+. . ....|+||+.++++.++++|||..|++..
T Consensus 213 ~~~~~~~~a~~~~~~l----g-----~~~~~vD~~~~~~g~~~v~EvN~~p~~~~ 258 (280)
T TIGR02144 213 LDEEVEELAVKAAEAV----G-----GGVVAIDIFESKERGLLVNEVNHVPEFKN 258 (280)
T ss_pred CCHHHHHHHHHHHHHh----C-----CCeEEEEEEEcCCCCEEEEEEeCCcchhh
Confidence 3445555555554432 1 23789999999999999999999999965
No 22
>PLN02257 phosphoribosylamine--glycine ligase
Probab=96.60 E-value=0.0082 Score=52.65 Aligned_cols=53 Identities=17% Similarity=0.034 Sum_probs=40.6
Q ss_pred CcceeeeeeEEEe-CCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhccc
Q psy9332 49 HCFECYGYDIIID-NQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVMW 101 (148)
Q Consensus 49 ~~FEl~G~D~~iD-~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~~ 101 (148)
.+..++.+|||++ +++.||+||+|+.|+......+...+...+++-++.++..
T Consensus 263 ~y~Gvl~ve~ml~~~~g~p~vLE~N~R~Gdpe~~~~l~~l~~Dl~~~~~~~~~g 316 (434)
T PLN02257 263 KFVGVLYAGLMIEKKSGLPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKG 316 (434)
T ss_pred CcEEEEEEEEEEEcCCCCEEEEEEECCCCCCchheEehhhcCCHHHHHHHHHcC
Confidence 4567788999999 7899999999999998655555555666666666666654
No 23
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=96.60 E-value=0.0049 Score=53.82 Aligned_cols=77 Identities=10% Similarity=0.004 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhccc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVMW 101 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~~ 101 (148)
+.+..++++.+++.+..+..... ..+..++.+|||++.+++||++|+|..|+-..++.+...+...+++-+++.+..
T Consensus 245 ~~~~~~i~~~i~~~~~~~l~~~g--~~~~Gvl~~e~~it~~g~~~vlE~n~R~Gdpe~~~ll~~l~~dl~~~~~~~~~g 321 (426)
T PRK13789 245 EAILQKVKERIFDPMFDDFRKKG--HPYRGLLYAGLMISPEGEPKVVEFNCRFGDPETQCVLAMLDGDLLELLYAASTG 321 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCceEEEEEEEEEcCCCCEEEEEEecCCCCcHhhhhhccCCCCHHHHHHHHHcC
Confidence 45666666533322222222221 246788999999999999999999999986555544444444555555554443
No 24
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=96.59 E-value=0.0041 Score=48.15 Aligned_cols=48 Identities=25% Similarity=0.448 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 80 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~ 80 (148)
-.+-+.+++++.++..+. ...+.|+| +++.+..+|++|||.+|++...
T Consensus 127 ~~l~~e~~~~a~~~~~~l---------gl~~~giD-i~~~~~~~~v~EvN~~~~~~~~ 174 (190)
T PF08443_consen 127 YDLPEEIKELALKAARAL---------GLDFAGID-ILDTNDGPYVLEVNPNPGFRGI 174 (190)
T ss_dssp ----HHHHHHHHHHHHHT---------T-SEEEEE-EEEETTEEEEEEEETT---TTH
T ss_pred ecCCHHHHHHHHHHHHHh---------CCCEEEEE-EEecCCCeEEEEecCCchHhHH
Confidence 356778888877775553 24679999 5566678999999999998864
No 25
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=96.36 E-value=0.011 Score=49.06 Aligned_cols=47 Identities=26% Similarity=0.318 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccC--CCCCcC
Q psy9332 25 LFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNAS--PSLTCT 80 (148)
Q Consensus 25 i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~--P~l~~~ 80 (148)
-|+++.+++.++-.. . ..+..+|.|+.+|++| |.|||.|.. |++...
T Consensus 217 ~w~~~~~l~~~~~~~-~-------p~~~~iGWDvait~~G-p~llE~N~~~~pgl~~~ 265 (285)
T PF14397_consen 217 NWDEILELAKEAHRK-F-------PGLGYIGWDVAITEDG-PVLLEGNARWDPGLMIQ 265 (285)
T ss_pred CHHHHHHHHHHHHHH-C-------CCCCeEEEEEEEcCCC-cEEEEeeCCCCCCcHhh
Confidence 466666666554222 2 2345799999999999 999999999 998754
No 26
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=95.99 E-value=0.018 Score=42.82 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHchhhhcCCCCc-ceeeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 25 LFTNISWLIVHSLKSVSYIMANDKHC-FECYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 25 i~~~i~~ii~~t~~a~~~~l~~~~~~-FEl~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
..+++++.+.+.+.+. ++ ...+++||++|++|..++||||..|+
T Consensus 136 ~~~~~~~~~~~~~~~~--------g~~~G~~~id~~~~~~g~~~~iEiN~R~~ 180 (184)
T PF13535_consen 136 LPEELRDLARKLLRAL--------GYRNGFFHIDFIVDPDGELYFIEINPRFG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHH--------T--SEEEEEEEEEETCCEEEEEEEESS--
T ss_pred cHHHHHHHHHHHHHHc--------CCceEEEEEEEEEeCCCCEEEEEECccCC
Confidence 4467777777665443 22 67789999999999999999999875
No 27
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=95.86 E-value=0.017 Score=52.08 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCc--EEEeeccCCCCCcCC
Q psy9332 20 DITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKP--WLIEVNASPSLTCTT 81 (148)
Q Consensus 20 d~~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kp--wLLEVN~~P~l~~~~ 81 (148)
|+++.+++.++++.+++..+. ...+-|+||++++-.+| .+||||.+|+|..-.
T Consensus 474 dvtd~~~~~~~~~A~~aa~~~---------gl~~~GvD~i~~~~~~p~~~iiEvN~~Pgl~~h~ 528 (547)
T TIGR03103 474 DVTEQLHPDLREAAERAARAL---------DIPVVGIDFLVPDVTGPDYVIIEANERPGLANHE 528 (547)
T ss_pred ecccccCHHHHHHHHHHHHHh---------CCCeEEEEEEeccCCCCCeEEEEecCCccccccC
Confidence 446779999999988886542 24568999999987777 899999999998653
No 28
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=95.66 E-value=0.053 Score=45.56 Aligned_cols=48 Identities=2% Similarity=0.014 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..++++++.+.+.+. ++...+++||+++.++.+|++|||..|+=+
T Consensus 221 ~~~~~~~~~~a~~i~~~l--------~~~G~~~ve~~~~~dg~~~v~EinpR~~~s 268 (352)
T TIGR01161 221 DAIQARAEEIARRLMEEL--------GYVGVLAVEMFVLPDGRLLINELAPRVHNS 268 (352)
T ss_pred HHHHHHHHHHHHHHHHHc--------CceeEEEEEEEEeCCCcEEEEEecCCCCCc
Confidence 345666666666654443 234678999999999999999999998754
No 29
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.77 E-value=0.098 Score=47.61 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhcc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVM 100 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~ 100 (148)
+.+..++++++.+++.+. +|...+.+||++++++.+|++|||+.|+.+.. -+....--.+.+..++.+.
T Consensus 246 ~~~~~~~~~~A~~~~~aL--------g~~Gv~~vEffv~~dG~v~v~EInpRpg~sGh-~t~ea~~~s~fe~~vRa~l 314 (577)
T PLN02948 246 WKVAKLATDVAEKAVGSL--------EGAGVFGVELFLLKDGQILLNEVAPRPHNSGH-YTIEACYTSQFEQHLRAVL 314 (577)
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCeEEEEEEEEcCCCcEEEEEEeCCCCCCCc-eeeecccCCHHHHHHHHHc
Confidence 467777777777776553 47778999999999999999999999985432 1111111244555555554
No 30
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=94.57 E-value=0.078 Score=45.22 Aligned_cols=34 Identities=15% Similarity=0.360 Sum_probs=27.8
Q ss_pred ceeeeeeEEEeCC--CCcEEEeeccCCCCCcCCcch
Q psy9332 51 FECYGYDIIIDNQ--LKPWLIEVNASPSLTCTTVND 84 (148)
Q Consensus 51 FEl~G~D~~iD~~--~kpwLLEVN~~P~l~~~~~~~ 84 (148)
-++||+|++.|.+ .+.+++|||..|++..-..+.
T Consensus 278 l~l~GvDvI~~~~~~~~~~VidVN~fP~~k~~p~~~ 313 (328)
T PLN02941 278 LRLFNFDMIREHGTGDRYYVIDINYFPGYAKMPGYE 313 (328)
T ss_pred CceEEEEEEeecCCCCceEEEEecCCCccccCCchH
Confidence 5789999999975 478999999999998665443
No 31
>PRK06524 biotin carboxylase-like protein; Validated
Probab=94.44 E-value=0.13 Score=46.31 Aligned_cols=51 Identities=16% Similarity=0.032 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC-CCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~-~~kpwLLEVN~~P~l~ 78 (148)
+.+..++++++.++..+.. .-+|..++++||++|. ++++|++|||..|+=.
T Consensus 275 ~ei~eeIqeiA~ka~~aL~-----~lG~~Gv~rVDFfvd~ddgevYfnEINPR~~G~ 326 (493)
T PRK06524 275 PAQTRKAREMVRKLGDVLS-----REGYRGYFEVDLLHDLDADELYLGEVNPRLSGA 326 (493)
T ss_pred HHHHHHHHHHHHHHHHHhh-----cCCCEEEEEEEEEEECCCCeEEEEEEeCCcccc
Confidence 4556667766666644321 1257889999999996 6999999999988753
No 32
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=94.25 E-value=0.29 Score=41.42 Aligned_cols=46 Identities=28% Similarity=0.256 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCc
Q psy9332 24 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 24 ~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~ 79 (148)
.+=+.++++++++- +.+ ...++|+||+.+ +...+++|||.+|+.-.
T Consensus 248 ~l~~e~~elA~kaa----~~l-----Gl~~~GVDiie~-~~g~~V~EVN~sP~~~~ 293 (318)
T COG0189 248 ELTEEEEELAVKAA----PAL-----GLGLVGVDIIED-KDGLYVTEVNVSPTGKG 293 (318)
T ss_pred CCCHHHHHHHHHHH----HHh-----CCeEEEEEEEec-CCCcEEEEEeCCCcccc
Confidence 46677888888774 444 567799999999 77899999999996655
No 33
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=94.23 E-value=0.2 Score=42.93 Aligned_cols=51 Identities=18% Similarity=0.083 Sum_probs=34.3
Q ss_pred cceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhccc
Q psy9332 50 CFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVMW 101 (148)
Q Consensus 50 ~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~~ 101 (148)
+...+.+||++++++ ||++|||..|+-.........+...+.+-.+.++..
T Consensus 266 ~~G~~~ie~~~t~~g-~~viEin~R~g~~~~~~~~~~~~~dl~~~~~~~~~g 316 (423)
T TIGR00877 266 YKGVLYAGLMLTKEG-PKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEG 316 (423)
T ss_pred cEeEEEEEEEEECCC-cEEEEEEccCCCccceeEecccCCCHHHHHHHHHcC
Confidence 556788999999888 999999999974433323222334555555555554
No 34
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=94.07 E-value=0.15 Score=43.39 Aligned_cols=48 Identities=6% Similarity=0.095 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+.+++++++.+++.+. ++...+++||+++.+++++++|+|..|.-+
T Consensus 223 ~~~~~~~~~~a~~i~~~L--------~~~G~~~vEff~~~dg~~~v~EinpR~~~s 270 (372)
T PRK06019 223 AELQAQAEEIASRIAEEL--------DYVGVLAVEFFVTGDGELLVNEIAPRPHNS 270 (372)
T ss_pred HHHHHHHHHHHHHHHHHc--------CccceeEEEEEEcCCCeEEEEEecCCccCc
Confidence 456667777666665442 234678999999999999999999999754
No 35
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=94.01 E-value=0.18 Score=42.44 Aligned_cols=48 Identities=13% Similarity=0.263 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~ 79 (148)
+.+..++++++.+++.+.- +...+++||+++++ .||++|||..|+-+.
T Consensus 229 ~~~~~~i~~~a~~~~~~l~--------~~G~~~ie~~~~~~-~~~viEinpR~~~~~ 276 (380)
T TIGR01142 229 EKALEEAQRIAKRITDALG--------GYGLFGVELFVKGD-EVIFSEVSPRPHDTG 276 (380)
T ss_pred HHHHHHHHHHHHHHHHHcC--------CcceEEEEEEEECC-cEEEEEeecCCCCCc
Confidence 5566677777666655532 35678999999876 799999999998653
No 36
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=93.91 E-value=0.17 Score=43.75 Aligned_cols=47 Identities=13% Similarity=0.204 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 77 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l 77 (148)
+.+..+|++++.+++.+ +. +-..+.+||++|++++|+++|||..|+-
T Consensus 249 ~~~~~~i~~~a~~~~~~----lg----~~g~~~ve~~~~~~g~~~viEiN~R~~~ 295 (450)
T PRK06111 249 EETRKAMGERAVQAAKA----IG----YTNAGTIEFLVDEQKNFYFLEMNTRLQV 295 (450)
T ss_pred HHHHHHHHHHHHHHHHH----cC----CCCceeEEEEEcCCCCEEEEEEECCcCC
Confidence 45667777777665433 22 1224568999999999999999998853
No 37
>PRK06849 hypothetical protein; Provisional
Probab=93.85 E-value=0.16 Score=43.28 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.2
Q ss_pred cceeeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 50 CFECYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 50 ~FEl~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
....+++||+.|++|++++||||..++
T Consensus 251 ~~G~~~~df~~~~~g~~~~iEiNpR~~ 277 (389)
T PRK06849 251 YTGQISFDFIETENGDAYPIECNPRTT 277 (389)
T ss_pred ceeEEEEEEEECCCCCEEEEEecCCCC
Confidence 445678999999999999999998766
No 38
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=93.80 E-value=0.23 Score=43.28 Aligned_cols=48 Identities=13% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..+|++++.+++.+. ++...+.+||++|.++.+|++|||..++-+
T Consensus 249 ~~~~~~i~~~a~~~~~~l--------g~~G~~~vef~~~~~g~~~viEiNpR~~~~ 296 (449)
T TIGR00514 249 PELRRKMGDAAVKAAVSI--------GYRGAGTVEFLLDKNGEFYFMEMNTRIQVE 296 (449)
T ss_pred HHHHHHHHHHHHHHHHHC--------CCcceEEEEEEEeCCCCEEEEEEECCCCCC
Confidence 456677777776664443 344667789999989999999999988644
No 39
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=93.79 E-value=0.21 Score=42.74 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=32.0
Q ss_pred HHHHHHH-HHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCC
Q psy9332 23 NKLFTNI-SWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 77 (148)
Q Consensus 23 ~~i~~~i-~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l 77 (148)
+.+.+++ ++++..++.+... . ....+..+.+|||+++++ ||++|+|..|+=
T Consensus 201 ~~~~~~~~~~i~~~~~~aL~~-~--g~~~~Gvl~~e~~lt~~g-~~viEiN~R~G~ 252 (379)
T PRK13790 201 DDVLKLTNETIAQPIAKAMLN-E--GYQFFGVLYIGAILTKDG-PKVIEFNARFGD 252 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-c--CCCceeEEEEEEEEeCCC-eEEEEEEcccCC
Confidence 3445555 4444444433222 1 123466777899998876 999999998754
No 40
>KOG2158|consensus
Probab=93.79 E-value=0.019 Score=51.29 Aligned_cols=59 Identities=34% Similarity=0.635 Sum_probs=53.0
Q ss_pred CCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhcccccCCCC
Q psy9332 48 KHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVMWNKYKKA 107 (148)
Q Consensus 48 ~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~~~~~~~~ 107 (148)
.-||+.+|+|+.. +..++|++|+|..|++..+...+..++..++..++.+...+.+.+.
T Consensus 12 ~v~~~~~~~~~~~-~~~~~w~~~~~~~p~~~~~~~~~~~~~r~~~~~~l~~~~i~~s~~~ 70 (565)
T KOG2158|consen 12 SVCFEVLGFDILL-RKLKPWLLEINRAPSFGTDQKIDYDVKRGVLLNALKLLNIRTSDKR 70 (565)
T ss_pred eeehHhhhhhhhh-hhcccccchhhcCCCCCCCcCcchhhhhhhhhhcccccCCCccchh
Confidence 4699999999999 9999999999999999999999999999999999999886555443
No 41
>KOG2155|consensus
Probab=93.78 E-value=0.086 Score=47.10 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHchhh---hc--CCCCcceeeeeeEEE--eCC--CCcEEEeeccCCCCCcCCcchHHHHHHHHH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYI---MA--NDKHCFECYGYDIII--DNQ--LKPWLIEVNASPSLTCTTVNDRILKYKLID 93 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~---l~--~~~~~FEl~G~D~~i--D~~--~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~ 93 (148)
..+-.+|..++.+.+.++... +. ..+++--+||.|+|+ |.+ ++|-|||||-+|.-.-.++.+......+..
T Consensus 537 ~dvq~~i~~aire~~eaaak~~~e~g~a~~p~sramygvDlml~~~~~pVmq~qILEVNFnPDc~RACrYhpdFfnnVFs 616 (631)
T KOG2155|consen 537 EDVQCSIVPAIREPFEAAAKLNPECGAALLPNSRAMYGVDLMLAGDLTPVMQPQILEVNFNPDCKRACRYHPDFFNNVFS 616 (631)
T ss_pred chhhhHHHHHHHHHHhhhhccCCcccccCCchhhhhhhheeeeccCCCccccceeEEEecCcchHHHhhcChhHHHhHHH
Confidence 344555555666666555432 22 245666679999999 777 999999999999988888777655544444
Q ss_pred H
Q psy9332 94 N 94 (148)
Q Consensus 94 d 94 (148)
.
T Consensus 617 t 617 (631)
T KOG2155|consen 617 T 617 (631)
T ss_pred H
Confidence 3
No 42
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=93.52 E-value=0.31 Score=40.00 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=22.6
Q ss_pred CcceeeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 49 HCFECYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 49 ~~FEl~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
++...+++||++|+ ++++++|+|..++
T Consensus 245 g~~G~~~vd~~~~~-g~~~viEiNpR~~ 271 (326)
T PRK12767 245 GARGPLNIQCFVTD-GEPYLFEINPRFG 271 (326)
T ss_pred CCeeeEEEEEEEEC-CeEEEEEEeCCCC
Confidence 34677889999997 8999999997665
No 43
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=93.40 E-value=0.3 Score=42.82 Aligned_cols=75 Identities=9% Similarity=-0.036 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhccc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVMW 101 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~~ 101 (148)
+.+..++++++..++.+.... ......++.++||+.+++ ||+||+|..++=....-+...+...+++-++.++..
T Consensus 245 ~~~~~~i~~i~~~~~~~l~~~---~~~~~G~l~~~~~lt~~g-p~ViE~n~R~gdpe~~~il~~l~~d~~~~~~~~~~g 319 (435)
T PRK06395 245 KDAPERAKHILNDIIRAMKDE---NNPFKGIMYGQFMDTPNG-VKVIEINARFADPEGINVLYLLKSDFVETLHQIYSG 319 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCceEEEEEEEEEEeCCC-cEEEEEeCCCCCccHHhhhhhcccCHHHHHHHHhcC
Confidence 567777777777776664422 224557788999998666 999999998773322223344445555555544443
No 44
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=93.39 E-value=0.28 Score=42.47 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
...+..+|.+++.+.+.+. . +-..+.+||++|.++++|++|||..++-.
T Consensus 248 ~~~~~~~l~~~a~~~~~~l----g----~~G~~~vEf~~~~~g~~~viEINpR~~~~ 296 (451)
T PRK08591 248 TEELRRKIGEAAVKAAKAI----G----YRGAGTIEFLYEKNGEFYFIEMNTRIQVE 296 (451)
T ss_pred CHHHHHHHHHHHHHHHHHc----C----CCceEEEEEEEcCCCCEEEEEEECCCCcc
Confidence 3567777777776665442 2 23446689999999999999999988644
No 45
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=93.39 E-value=0.25 Score=41.84 Aligned_cols=47 Identities=11% Similarity=0.214 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..++++++.+++.+.. +...+.+||+++++ .|+++|+|..|+-.
T Consensus 242 ~~~~~~i~~~~~~~~~~L~--------~~G~~~ve~~~~~~-~~~viEinpR~~~~ 288 (395)
T PRK09288 242 PAALEEAQEIAKKVTDALG--------GRGLFGVELFVKGD-EVYFSEVSPRPHDT 288 (395)
T ss_pred HHHHHHHHHHHHHHHHHcC--------CeeEEEEEEEEeCC-eEEEEEecCCCCCC
Confidence 4566677777776655542 45678899999887 79999999998754
No 46
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=93.14 E-value=0.37 Score=41.48 Aligned_cols=75 Identities=19% Similarity=0.102 Sum_probs=43.8
Q ss_pred HHHHHHHHH-HHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhccc
Q psy9332 23 NKLFTNISW-LIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVMW 101 (148)
Q Consensus 23 ~~i~~~i~~-ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~~ 101 (148)
+.+..++++ ++..++.+... +. -.+...+.+||++++++ |+|+|+|..|+-.........+...+++-+++++..
T Consensus 239 ~~~~~~~~~~i~~~~~~al~~-~g--l~~~G~~~ve~~~t~~g-~~viEin~R~g~~~~~~~~~~~~~d~~~~~~~~~~g 314 (420)
T PRK00885 239 EEVVERVMEEIIKPTVKGMAA-EG--IPYTGVLYAGLMITKDG-PKVIEFNARFGDPETQVVLPRLKSDLVELLLAAADG 314 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cC--CCcEeEEEEEEEEECCC-cEEEEEecccCCccHHhhhhhccCCHHHHHHHHHcC
Confidence 345555554 44444333221 11 12345678999999876 899999999875433333344444666666666654
No 47
>PRK05586 biotin carboxylase; Validated
Probab=93.14 E-value=0.32 Score=42.34 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..+|++++.+++.+. . +-....+||++|.++++|++|||..|+-+
T Consensus 249 ~~~~~~l~~~a~~i~~aL----g----~~g~~~vEf~~~~~g~~~~iEvNpR~~~~ 296 (447)
T PRK05586 249 EELRKKMGEIAVKAAKAV----N----YKNAGTIEFLLDKDGNFYFMEMNTRIQVE 296 (447)
T ss_pred HHHHHHHHHHHHHHHHHc----C----CcceeEEEEEEcCCCCEEEEEEECCCCCC
Confidence 456666776666665442 2 22245699999999999999999988654
No 48
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=92.96 E-value=0.19 Score=47.16 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=41.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcE--------EEeeccCCCCCcC
Q psy9332 19 KDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPW--------LIEVNASPSLTCT 80 (148)
Q Consensus 19 ~d~~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpw--------LLEVN~~P~l~~~ 80 (148)
.|+++.|.+..+++++++..++ . ..+-|+|+++.+--+|+ +||||.+|+|..-
T Consensus 657 iDvTd~ihp~~~~lA~~aa~al----g-----l~i~GVDii~~di~~p~~~~~~~~~iiEvN~~P~l~mH 717 (737)
T TIGR01435 657 IDMTDEMDDSYKQIAIRIATAV----G-----AAICGVDLIIPDETIPDTDKHAIWGVIEANFNPAMHMH 717 (737)
T ss_pred EecccccCHHHHHHHHHHHHhc----C-----CCEEEEEEEecCCCCCccccccceEEEEEcCCcchhhh
Confidence 4567889999999988886553 1 23689999998776665 8999999999754
No 49
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=92.80 E-value=0.25 Score=41.35 Aligned_cols=51 Identities=20% Similarity=0.334 Sum_probs=35.7
Q ss_pred CCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCC---cchHHHHHHHHHHHHhhcc
Q psy9332 48 KHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT---VNDRILKYKLIDNILNIVM 100 (148)
Q Consensus 48 ~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~---~~~~~lk~~ll~d~l~lv~ 100 (148)
.+|+..+|+|+++. ..||++|||..|.-..-. .....+-.-++...+.-+.
T Consensus 231 ~Gl~GYVGVDlVls--D~pYvIEINpR~TTp~vg~sr~~~~sv~~LLl~~~~g~~~ 284 (307)
T COG1821 231 PGLNGYVGVDLVLS--DEPYVIEINPRPTTPTVGLSRVTPESVAELLLEGPTGKVL 284 (307)
T ss_pred ccccceeeEEEEec--CCcEEEEecCCCCcceeeeeccccHHHHHHHhcCcccccc
Confidence 47999999999998 889999999988655332 2344555555555444443
No 50
>PRK08462 biotin carboxylase; Validated
Probab=92.75 E-value=0.31 Score=42.23 Aligned_cols=48 Identities=13% Similarity=0.257 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+.++|++++.+++.+. . +....-+||++|.++.+|++|||..++-.
T Consensus 251 ~~~~~~i~~~a~~~~~al----g----~~G~~~ve~~~~~~g~~~viEiNpR~~~~ 298 (445)
T PRK08462 251 EKTRERLHETAIKAAKAI----G----YEGAGTFEFLLDSNLDFYFMEMNTRLQVE 298 (445)
T ss_pred HHHHHHHHHHHHHHHHHc----C----CCCcceEEEEEeCCCCEEEEEEECCcCcC
Confidence 456677777776665543 2 11222368999988899999999998653
No 51
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=92.32 E-value=0.47 Score=41.80 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..+|++++.+.+.+. . +-....+||++|.++++|++|||..++.+
T Consensus 248 ~~~~~~i~~~a~~~~~aL----g----~~g~~~vEf~~d~~g~~y~iEiNpRl~~~ 295 (472)
T PRK07178 248 PEQRAYIGDLAVRAAKAV----G----YENAGTVEFLLDADGEVYFMEMNTRVQVE 295 (472)
T ss_pred HHHHHHHHHHHHHHHHHc----C----CCceeEEEEEEeCCCCEEEEEEeCCcCCC
Confidence 567777777777765553 2 22234589999999999999999988654
No 52
>PLN02735 carbamoyl-phosphate synthase
Probab=92.08 E-value=0.38 Score=47.05 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 77 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l 77 (148)
+.+..+|++++.+...+ -++-.++.+||++|.++++|++|||..|+.
T Consensus 832 ~e~~~~i~~~a~ki~~~--------L~~~G~~~vqf~v~~dg~~yviEiNpR~s~ 878 (1102)
T PLN02735 832 SSCLATIRDWTTKLAKR--------LNVCGLMNCQYAITPSGEVYIIEANPRASR 878 (1102)
T ss_pred HHHHHHHHHHHHHHHHH--------cCCcceeeEEEEEcCCCcEEEEEEeCCCCc
Confidence 34556666655554322 245577789999999999999999999974
No 53
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=91.89 E-value=0.34 Score=41.09 Aligned_cols=39 Identities=21% Similarity=0.445 Sum_probs=29.0
Q ss_pred cceeeeeeEEEeCCC--CcEEEeeccCCCCCcCCcchHHHH
Q psy9332 50 CFECYGYDIIIDNQL--KPWLIEVNASPSLTCTTVNDRILK 88 (148)
Q Consensus 50 ~FEl~G~D~~iD~~~--kpwLLEVN~~P~l~~~~~~~~~lk 88 (148)
...|||||++++... +-++|.||.-||+..-..+...+.
T Consensus 262 gL~LFgfDvI~~~~t~~~~~VIDINyFPgY~~vp~f~~~l~ 302 (307)
T PF05770_consen 262 GLTLFGFDVIRENGTGGRYYVIDINYFPGYKKVPDFESVLT 302 (307)
T ss_dssp T-SEEEEEEEEGCCT-SSEEEEEEEES--TTTSCTHHHHHH
T ss_pred CcceeeeEEEEEcCCCCcEEEEEeccCCCccCCCChHHHHH
Confidence 367999999999874 899999999999987665554443
No 54
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=91.55 E-value=0.54 Score=37.34 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=35.1
Q ss_pred hHHHHHHHHH-HHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 22 TNKLFTNISW-LIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 22 ~~~i~~~i~~-ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
.+.+..+|.+ |+..|+.+...+ .-.+..++.+.+|+.++| |++||.|...+
T Consensus 139 ~~~~~~~i~~~I~~pt~~~l~~e---g~~y~GvLy~glMlt~~G-p~vlEfN~RfG 190 (194)
T PF01071_consen 139 TDELLEEIIEEILEPTLKGLKKE---GIPYRGVLYAGLMLTEDG-PKVLEFNVRFG 190 (194)
T ss_dssp -HHHHHHHHHHTHHHHHHHHHHT---T---EEEEEEEEEEETTE-EEEEEEESSGS
T ss_pred CHHHHHHHHHHHHHHHHHHHHhc---CCCcceeeeeeeEEeCCC-cEEEEEeCCCC
Confidence 4567777776 556665554443 346778899999999888 99999998643
No 55
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=91.35 E-value=0.62 Score=41.03 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC-CCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~-~~kpwLLEVN~~P~l~ 78 (148)
+.+.++|++++.+++.++ ++-....+||++|+ ++.+|+||||..++-+
T Consensus 251 ~~~~~~l~~~a~~~~~al--------g~~G~~~vEf~~~~~~g~~~~iEvNpR~~~~ 299 (467)
T PRK12833 251 PAQRDALCASAVRLARQV--------GYRGAGTLEYLFDDARGEFYFIEMNTRIQVE 299 (467)
T ss_pred HHHHHHHHHHHHHHHHHc--------CCcCcceEEEEEecCCCCEEEEEEECCCCcc
Confidence 456777777776665443 22234557999984 6899999999988644
No 56
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=91.31 E-value=0.64 Score=41.07 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
.+.+..+|++++.+++.+.. . .+ ..-+||++|.++++|++|||+.++-+
T Consensus 248 ~~~~~~~i~~~a~~~~~alg----~-~g---~~~vEf~~~~~~~~y~iEiN~R~~~~ 296 (478)
T PRK08463 248 SDNLRKTMGVTAVAAAKAVG----Y-TN---AGTIEFLLDDYNRFYFMEMNTRIQVE 296 (478)
T ss_pred CHHHHHHHHHHHHHHHHHcC----C-CC---ceeEEEEEcCCCCEEEEEEECCcCCC
Confidence 35677777777777655432 1 12 23579999998999999999888655
No 57
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=91.08 E-value=0.22 Score=42.49 Aligned_cols=30 Identities=23% Similarity=0.253 Sum_probs=25.9
Q ss_pred CcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 49 HCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 49 ~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
++-.++++.|-.|.+|+|+|||||+.||=.
T Consensus 255 ~l~g~~NiQ~r~d~~g~p~LLEINpR~sGG 284 (329)
T PF15632_consen 255 GLDGLFNIQFRYDEDGNPKLLEINPRPSGG 284 (329)
T ss_pred CCCceEEEEEEEcCCCCEEEEEeCCCCccc
Confidence 566678999999999999999999988733
No 58
>PRK14016 cyanophycin synthetase; Provisional
Probab=90.55 E-value=0.6 Score=43.63 Aligned_cols=65 Identities=18% Similarity=0.265 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCC------CCcEEEeeccCCCCCcCC-c---chHHHHHHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQ------LKPWLIEVNASPSLTCTT-V---NDRILKYKL 91 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~------~kpwLLEVN~~P~l~~~~-~---~~~~lk~~l 91 (148)
++.+-++..+++.++..+ -.+.+.|+|++.++- -...++|||.+|++.... + ....+-..+
T Consensus 397 td~i~~~~~~~a~~aa~~---------~gl~~~GvDi~~~di~~p~~~~~~~iiEvN~sPgi~~~~~p~~g~~r~v~~~I 467 (727)
T PRK14016 397 TDEVHPENAAIAERAAKI---------IGLDIAGVDVVCEDISKPLEEQGGAIVEVNAAPGLRMHLAPSEGKPRNVGEAI 467 (727)
T ss_pred ccccCHHHHHHHHHHHHh---------cCCCEEEEEEEecCcccccccCCcEEEEEcCCcchhhccCCCCCcchhHHHHH
Confidence 456778877777776433 246789999999763 234799999999998643 2 234444555
Q ss_pred HHHH
Q psy9332 92 IDNI 95 (148)
Q Consensus 92 l~d~ 95 (148)
+..+
T Consensus 468 id~L 471 (727)
T PRK14016 468 VDML 471 (727)
T ss_pred HHHh
Confidence 5553
No 59
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=90.40 E-value=0.76 Score=39.63 Aligned_cols=52 Identities=8% Similarity=0.117 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCC
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASP 75 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P 75 (148)
.+.+.+++.+.+.+.+.++...+. +....-|.+|+++++++.+|++|||..+
T Consensus 261 resll~~v~~~~~~~v~a~~~~~~--~~~~Gp~~ie~~~~~d~~~~V~Eis~R~ 312 (358)
T PRK13278 261 RESLLPQVFEYGERFVETSKELVP--PGMIGPFCLESVVTDNLEIVVFEISARI 312 (358)
T ss_pred hHhHHHHHHHHHHHHHHHHHHhcC--ccccCCceEEEEEcCCCCEEEEEEeCcc
Confidence 456778888888877777655553 2455667789999999999999998876
No 60
>PRK07206 hypothetical protein; Provisional
Probab=89.95 E-value=0.87 Score=38.85 Aligned_cols=46 Identities=13% Similarity=0.097 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCC
Q psy9332 24 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 77 (148)
Q Consensus 24 ~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l 77 (148)
....+|.+.+.+++.+. .- .+..+.+||++++++ |||||||..|+=
T Consensus 245 ~~~~~i~~~~~~~~~al----g~---~~G~~h~E~~~~~~g-~~liEin~R~~G 290 (416)
T PRK07206 245 PEYQELVDYTKQALDAL----GI---KNGPAHAEVMLTADG-PRLIEIGARLDG 290 (416)
T ss_pred HHHHHHHHHHHHHHHHc----CC---ccCCceEEEEEcCCC-CEEEEECCccCC
Confidence 45566666666655442 21 124467899999887 899999999874
No 61
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=89.80 E-value=0.95 Score=44.56 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+.++|++++.+.+.+ + ++-....+||++|.++++|+||||..++-+
T Consensus 249 ~e~r~~I~~~A~kla~a----L----gy~G~gtVEFlvd~dg~~yfIEVNPRiqve 296 (1143)
T TIGR01235 249 REVRDEIAEYAVKLAKA----V----NYINAGTVEFLVDNDGKFYFIEVNPRIQVE 296 (1143)
T ss_pred HHHHHHHHHHHHHHHHH----c----CCcceEEEEEEEeCCCcEEEEEeecCCCcc
Confidence 45667777777765543 2 222345699999999999999999998754
No 62
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=88.87 E-value=1.2 Score=39.80 Aligned_cols=75 Identities=4% Similarity=-0.058 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEe-CCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhcc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVM 100 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD-~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~ 100 (148)
+..+..+.+++..++.+....+. ..+...+-.+||++ +++ |+|||+|..++=...+.+...+...+++-++.++.
T Consensus 260 ~~~~~~~~~~v~~~l~al~~~~g--~~~~G~l~~elmlt~~~G-P~vIE~n~R~Gdpe~~~llp~l~~dl~~~~~~~~~ 335 (486)
T PRK05784 260 EEEYEEAVEIVKRTIDAIYKETG--ERYVGVISGQMMLTELWG-PTVIEYYSRFGDPEASNIIPRIESDFGELFELAAT 335 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEEEEEEEecCCC-cEEEEEecccCCchHHHHHHhccCCHHHHHHHHHc
Confidence 55666677777777666554433 12335566799998 555 99999999877222222233334444444444444
No 63
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=88.57 E-value=0.59 Score=44.50 Aligned_cols=51 Identities=25% Similarity=0.426 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcE------EEeeccCCCCCcC
Q psy9332 21 ITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPW------LIEVNASPSLTCT 80 (148)
Q Consensus 21 ~~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpw------LLEVN~~P~l~~~ 80 (148)
+++.+-+..++++.++-.+ + ...+-|+|++..+--+|| ++|||.+|++..-
T Consensus 395 ~td~i~~~~~~~a~~aa~~----~-----gl~i~gvD~i~~di~~~~~~~~~~iiEvN~~p~~~~h 451 (864)
T TIGR02068 395 RTDEIHPENAATAVRAAKI----I-----GLDIAGVDIVTEDISRPLRDTDGAIVEVNAAPGLRMH 451 (864)
T ss_pred cccccCHHHHHHHHHHHHH----h-----CCCeEEEEEEecCCCCCccccCcEEEEEcCCcchhhc
Confidence 4567778877777766333 2 346788999998766665 9999999999743
No 64
>PLN02735 carbamoyl-phosphate synthase
Probab=88.39 E-value=1.3 Score=43.37 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCc-ceeeeeeEEEe-CCCCcEEEeeccCCCC
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHC-FECYGYDIIID-NQLKPWLIEVNASPSL 77 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~-FEl~G~D~~iD-~~~kpwLLEVN~~P~l 77 (148)
.+..+.+|++++.+++.+. ++ .....+||++| .++++|++|||..++.
T Consensus 274 ~~~~~q~l~~~A~ki~~aL--------gi~~G~~nVqf~l~~~~g~~~ViEVNPR~s~ 323 (1102)
T PLN02735 274 TDKEYQRLRDYSVAIIREI--------GVECGGSNVQFAVNPVDGEVMIIEMNPRVSR 323 (1102)
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCCcCceEEEEEEECCCCcEEEEEecCCCCC
Confidence 3567778888877776553 23 34467899999 5899999999976664
No 65
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=87.70 E-value=0.65 Score=43.72 Aligned_cols=52 Identities=25% Similarity=0.407 Sum_probs=39.3
Q ss_pred chhHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCc--------EEEeeccCCCCCcC
Q psy9332 20 DITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKP--------WLIEVNASPSLTCT 80 (148)
Q Consensus 20 d~~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kp--------wLLEVN~~P~l~~~ 80 (148)
|+++.|-+..+++++++..++ ...+.|+|+++++-.+| -+||||.+|++..-
T Consensus 672 dvtd~ih~~~~~lA~~aa~~i---------gl~~~GvDii~~di~~p~~~~~~~~~IiEvN~~P~l~mH 731 (752)
T PRK02471 672 DMTDDMDDSYKQIAVKAAKAL---------GAKICGVDLIIPDLTQPASPEHPNYGIIELNFNPAMYMH 731 (752)
T ss_pred ecccccCHHHHHHHHHHHHhc---------CCCEEEEEEEeCCCcccccccCCCeEEEEecCCCchhhc
Confidence 456788888888888876553 14478999999874443 57999999999754
No 66
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=86.85 E-value=0.64 Score=39.76 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=20.1
Q ss_pred CcceeeeeeEEEeCCCCcEEEeeccCC
Q psy9332 49 HCFECYGYDIIIDNQLKPWLIEVNASP 75 (148)
Q Consensus 49 ~~FEl~G~D~~iD~~~kpwLLEVN~~P 75 (148)
....++|+||.-+.+|+.|+||.|++.
T Consensus 66 ~~~~~~g~Dl~r~~dG~w~VleDn~~~ 92 (330)
T PF04174_consen 66 VRLHFYGADLVRDPDGRWRVLEDNTRA 92 (330)
T ss_dssp -S-SEEEEEEEE-SSS-EEEEEEE-SS
T ss_pred eEEEEEEEeeeECCCCCEEEEEecCCC
Confidence 456689999999999999999999973
No 67
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=86.26 E-value=2 Score=41.78 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 77 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l 77 (148)
+....+|++++.+++.+. ++...+++||+++ ++.||++|||..|+-
T Consensus 798 ~~~~~~i~~~a~~i~~aL--------g~~G~~~vqf~~~-~~~~yViEiNpR~s~ 843 (1066)
T PRK05294 798 EEIIEEIREYTKKLALEL--------NVVGLMNVQFAVK-DDEVYVIEVNPRASR 843 (1066)
T ss_pred HHHHHHHHHHHHHHHHHc--------CCeeeEEEEEEEE-CCeEEEEEEecCCCc
Confidence 456667776666665442 2346788999998 568999999999863
No 68
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=85.27 E-value=3.1 Score=37.22 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~ 79 (148)
..+..+|++++.+.+.++ .- -....+||+++ ++++|++|||+.++.++
T Consensus 249 ~~~~~~l~~~A~~l~~al----gy----~g~gtVEfl~~-~g~~yflEiNpRlqveh 296 (499)
T PRK08654 249 PELRERMGEAAVKAAKAI----NY----ENAGTVEFLYS-NGNFYFLEMNTRLQVEH 296 (499)
T ss_pred HHHHHHHHHHHHHHHHHc----CC----CCceEEEEEEE-CCcEEEEEEECCCCCCC
Confidence 567777777777665442 21 11233688886 57999999999987654
No 69
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=84.00 E-value=2.8 Score=40.81 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 77 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l 77 (148)
+.+.++|++++.+...+. ++-.++.+||++++ +.+|+||||..++-
T Consensus 798 ~~~~~~i~~~a~ki~~aL--------gi~G~~~vqf~~~~-~~~yvIEvNpR~s~ 843 (1050)
T TIGR01369 798 AEIVDRIKDIVRKIAKEL--------NVKGLMNIQFAVKD-GEVYVIEVNPRASR 843 (1050)
T ss_pred HHHHHHHHHHHHHHHHHC--------CCcceEEEEEEEEC-CeEEEEEEeCCCCc
Confidence 456677777766665443 22356789999985 78999999999874
No 70
>PRK12999 pyruvate carboxylase; Reviewed
Probab=83.05 E-value=3.9 Score=40.36 Aligned_cols=48 Identities=19% Similarity=0.207 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..+|++++.+.+.++ .- .+ ...+||++|.++.+|+||||..++-+
T Consensus 253 ~~~~~~l~~~A~kl~~al----gy-~G---~gtVEflvd~dg~~yfIEINpRlqve 300 (1146)
T PRK12999 253 EELRERICEAAVKLARAV----GY-VN---AGTVEFLVDADGNFYFIEVNPRIQVE 300 (1146)
T ss_pred HHHHHHHHHHHHHHHHHc----CC-Cc---eEEEEEEEECCCCEEEEEEECCCCCc
Confidence 456777777777665543 21 12 34589999999999999999887643
No 71
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=81.72 E-value=4.5 Score=35.18 Aligned_cols=50 Identities=8% Similarity=0.086 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeecc
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNA 73 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~ 73 (148)
.+.+.+++.+++.+.+.++...+.+ +...-|.+|+++++++.+|++|||.
T Consensus 268 rEslle~v~e~ger~v~a~~~~~~p--g~iGpf~lQ~iv~~d~~~~V~EInp 317 (366)
T PRK13277 268 RESLLEKVFEIGEKFVEATKELYPP--GIIGPFTLQTIVTPDLDFVVYDVAP 317 (366)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhcCc--ccccceEEEEEEcCCCcEEEEEEcC
Confidence 4467788888877776665544432 3344466788999999999999985
No 72
>PRK05246 glutathione synthetase; Provisional
Probab=81.32 E-value=2.9 Score=34.76 Aligned_cols=19 Identities=47% Similarity=0.796 Sum_probs=15.0
Q ss_pred eeeeeEEEeCCCCcEEEeecc-CCC
Q psy9332 53 CYGYDIIIDNQLKPWLIEVNA-SPS 76 (148)
Q Consensus 53 l~G~D~~iD~~~kpwLLEVN~-~P~ 76 (148)
..|+|++.+ ||+|||. +|+
T Consensus 269 ~~GVDli~~-----~l~EvN~~~p~ 288 (316)
T PRK05246 269 FVGIDVIGD-----YLTEINVTSPT 288 (316)
T ss_pred EEEEEEeCC-----EEEEEeCCCch
Confidence 489999943 8999996 473
No 73
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=79.43 E-value=5.4 Score=38.98 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCC-CCcEEEeeccCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQ-LKPWLIEVNASPSL 77 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~-~kpwLLEVN~~P~l 77 (148)
+..+.++++++.+++.+. ++...+.++|++|.+ ++++++|||..++-
T Consensus 258 ~~~~~~l~~~a~ki~~~L--------g~~G~~~vef~l~~~~g~~~ViEINPR~~~ 305 (1068)
T PRK12815 258 DDEYQMLRSASLKIISAL--------GVVGGCNIQFALDPKSKQYYLIEVNPRVSR 305 (1068)
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCCceEEEEEEECCCCcEEEEEEecCccc
Confidence 456677777777765553 234557789999976 79999999976654
No 74
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=78.98 E-value=5.8 Score=38.76 Aligned_cols=47 Identities=17% Similarity=0.163 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
....++|++.+.+.+.+. +.-.++.+||++++ +.+|+||||..++-.
T Consensus 796 ~~~~~~i~~~a~ki~~~L--------~~~G~~niqf~v~~-~~~yviEiNpR~s~t 842 (1068)
T PRK12815 796 EEQQEKIRDYAIKIAKKL--------GFRGIMNIQFVLAN-DEIYVLEVNPRASRT 842 (1068)
T ss_pred HHHHHHHHHHHHHHHHHc--------CCccEEEEEEEEEC-CcEEEEEEeCCCCcc
Confidence 345677777666654442 22357889999986 579999999998753
No 75
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=78.06 E-value=4 Score=32.75 Aligned_cols=46 Identities=28% Similarity=0.309 Sum_probs=28.9
Q ss_pred CcceeeeeeEEEeCCCCcEEEeeccC--CCCCcCCcchHHHHHHHHHH
Q psy9332 49 HCFECYGYDIIIDNQLKPWLIEVNAS--PSLTCTTVNDRILKYKLIDN 94 (148)
Q Consensus 49 ~~FEl~G~D~~iD~~~kpwLLEVN~~--P~l~~~~~~~~~lk~~ll~d 94 (148)
+..++.|+|.+...+|+-+++|||.+ |=+.-..+-|..++..|+-.
T Consensus 152 GGlDI~~v~ai~~kdGke~Iievnds~m~L~g~~qeeDr~~I~dlV~~ 199 (203)
T PF02750_consen 152 GGLDICAVDAIHGKDGKEYIIEVNDSSMPLIGEHQEEDRRLIADLVVA 199 (203)
T ss_dssp G--SEEEEEEEEETTS-EEEEEEE-TT----GGGHHHHHHHHHHHHHH
T ss_pred CCccEEEEEEEEcCCCCEEEEEecCCcccccchhHHHHHHHHHHHHHH
Confidence 45678889999999999999999986 33333334566666665543
No 76
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=78.05 E-value=6.7 Score=38.26 Aligned_cols=49 Identities=10% Similarity=0.100 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEe-CCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD-~~~kpwLLEVN~~P~l~ 78 (148)
+....++++++.+++.+. . -.+..+.+||++| .+++++++|||..|+-+
T Consensus 258 ~~~~~~l~~~a~ki~~aL----g---~~~G~~~vef~~~~~~g~~~viEiNPR~~~s 307 (1066)
T PRK05294 258 DKEYQMLRDASIAIIREI----G---VETGGCNVQFALNPKDGRYIVIEMNPRVSRS 307 (1066)
T ss_pred HHHHHHHHHHHHHHHHHc----C---CccCceEEEEEEECCCCcEEEEEeecCCCcc
Confidence 456667777777665442 2 1225577899999 57899999999777644
No 77
>PRK02186 argininosuccinate lyase; Provisional
Probab=77.53 E-value=6.7 Score=37.45 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
+.+..++.+++.+++.+ +.- .+..+.+||+++++ .|+++|||..|+
T Consensus 233 ~~~~~~l~~~~~~~l~a----LG~---~~G~~hvE~~~t~~-g~~liEIn~R~~ 278 (887)
T PRK02186 233 APQRERIVRTVLRALDA----VGY---AFGPAHTELRVRGD-TVVIIEINPRLA 278 (887)
T ss_pred HHHHHHHHHHHHHHHHH----cCC---CcCceEEEEEEECC-CEEEEEECCCCC
Confidence 34566666666666544 221 14557889999865 599999998765
No 78
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=77.21 E-value=19 Score=33.37 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHH-HHHHHHHHhhcc
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILK-YKLIDNILNIVM 100 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk-~~ll~d~l~lv~ 100 (148)
++.+...|....+.+.+++- ...-+..| |++|.++.-|+||+|+ -|++.+|+.+.+- -.|++..+++..
T Consensus 248 ~~~~R~amg~aAv~~a~avg---Y~gAGTVE-----Fivd~~~~f~FlEMNT--RLQVEHPVTE~iTGiDLVewqiRVA~ 317 (645)
T COG4770 248 TEETREAMGEAAVAAAKAVG---YVGAGTVE-----FIVDADGNFYFLEMNT--RLQVEHPVTELITGIDLVEWQIRVAS 317 (645)
T ss_pred CHHHHHHHHHHHHHHHHhcC---CCcCceEE-----EEEcCCCcEEEEEeec--ceeccccchhhhhhhHHHHHHHHHhc
Confidence 35666777766666544421 11234444 7999999999999999 5777888877763 578888999988
Q ss_pred cccCCCC
Q psy9332 101 WNKYKKA 107 (148)
Q Consensus 101 ~~~~~~~ 107 (148)
.++-+..
T Consensus 318 GekL~~~ 324 (645)
T COG4770 318 GEKLPFT 324 (645)
T ss_pred CCcCCcc
Confidence 7765543
No 79
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=77.08 E-value=10 Score=30.13 Aligned_cols=69 Identities=12% Similarity=0.133 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC-CCCcEEEeeccCCCCCcCCcchHH-HHHHHHHHHHhhc
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLTCTTVNDRI-LKYKLIDNILNIV 99 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~-~~kpwLLEVN~~P~l~~~~~~~~~-lk~~ll~d~l~lv 99 (148)
.+.++.+|.++..+...++ +.-.+.-+=|++|. +++.|+||||+. ++.++++... .-..++.-.++++
T Consensus 134 ~~~~~~~l~~~a~~ia~~l--------~~~G~~tvef~~~~~~~~~y~lEvNpR--~~~~~p~~e~~tg~dlv~~~~~ia 203 (211)
T PF02786_consen 134 SDEERQKLREAAKKIARAL--------GYVGAGTVEFAVDPDDGEFYFLEVNPR--LQREHPVTEKVTGYDLVRVQIRIA 203 (211)
T ss_dssp -HHHHHHHHHHHHHHHHHT--------T-EEEEEEEEEEETTTTEEEEEEEESS----TTHHHHHHHHT--HHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhh--------CeeecceEEEEEccCccceeeecccCC--CCCcchHHHHHHCCCHHHHHHHHH
Confidence 3567777777777664332 33344456789998 899999999874 4555666543 4456666666665
Q ss_pred c
Q psy9332 100 M 100 (148)
Q Consensus 100 ~ 100 (148)
.
T Consensus 204 ~ 204 (211)
T PF02786_consen 204 L 204 (211)
T ss_dssp T
T ss_pred C
Confidence 5
No 80
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=76.78 E-value=7.7 Score=37.82 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC-CCCcEEEeeccCCCCCc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLTC 79 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~-~~kpwLLEVN~~P~l~~ 79 (148)
+..+.++++++.+++.+ +. +...+.+||++|. +++++++|||..++-++
T Consensus 257 ~~~~~~l~~~a~~i~~~----Lg----~~G~~~Vef~l~~~~g~~~viEiNPR~~~s~ 306 (1050)
T TIGR01369 257 DKEYQMLRDASIKIIRE----LG----IEGGCNVQFALNPDSGRYYVIEVNPRVSRSS 306 (1050)
T ss_pred HHHHHHHHHHHHHHHHH----cC----CcceeEEEEEEECCCCcEEEEEeecCcCcch
Confidence 45666777766666544 22 2233778999996 48999999998887543
No 81
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=73.98 E-value=10 Score=37.75 Aligned_cols=48 Identities=10% Similarity=0.033 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC-CCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~-~~kpwLLEVN~~P~l~ 78 (148)
+.+..+|.+.+.+...+ +. +-....+||++|. ++.+++||||..++-.
T Consensus 247 ~~~~~~l~~~a~~l~~a----Lg----y~G~~~VEfild~~~g~~y~lEVNpRlq~~ 295 (1201)
T TIGR02712 247 PETRQALLAAAERLGEA----VN----YRSAGTVEFIYDEARDEFYFLEVNTRLQVE 295 (1201)
T ss_pred HHHHHHHHHHHHHHHHh----cC----ccceEEEEEEEECCCCCEEEEEEECCcCcc
Confidence 45566666666554433 22 2234568999996 4899999999988543
No 82
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=73.13 E-value=3.6 Score=36.09 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=22.2
Q ss_pred Ccceeee-eeEEEeCCCCcEEEeecc
Q psy9332 49 HCFECYG-YDIIIDNQLKPWLIEVNA 73 (148)
Q Consensus 49 ~~FEl~G-~D~~iD~~~kpwLLEVN~ 73 (148)
.-..++| |||..|.++.+-|+|.|+
T Consensus 103 ~~~slyGRfDfa~dg~g~~KllE~NA 128 (397)
T PHA02117 103 DEWGLYGRFDLIMTPNGGPKMLEYNA 128 (397)
T ss_pred CCCcEEEEEEEEEcCCCCeEEEEecC
Confidence 3446999 999999999999999998
No 83
>PRK12458 glutathione synthetase; Provisional
Probab=72.99 E-value=8.2 Score=32.71 Aligned_cols=43 Identities=33% Similarity=0.315 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeecc-CC-CCC
Q psy9332 25 LFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNA-SP-SLT 78 (148)
Q Consensus 25 i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~-~P-~l~ 78 (148)
+-+.+++++.++ .+.+.. .+.+ ..|+|++ .++|+|||. +| ++.
T Consensus 259 l~~~~~~ia~~~----~~~l~~-~GL~-~~gVDli-----~~~l~EIN~~sp~g~~ 303 (338)
T PRK12458 259 LTKEELELCEAI----RPKLVR-DGLF-FVGLDIV-----GDKLVEVNVFSPGGLT 303 (338)
T ss_pred CCHHHHHHHHHH----HHHHhh-cCCe-EEeEEEE-----CCEEEEEeCCCcchHH
Confidence 445555555554 333321 2333 5899998 346999998 78 543
No 84
>PF07065 D123: D123; InterPro: IPR009772 This family contains a number of eukaryotic D123 proteins approximately 330 residues long. It has been shown that mutated variants of D123 exhibit temperature-dependent differences in their degradation rate [].
Probab=71.36 E-value=11 Score=31.65 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.5
Q ss_pred eeeeEEEeCC-CCcEEEeeccCCC
Q psy9332 54 YGYDIIIDNQ-LKPWLIEVNASPS 76 (148)
Q Consensus 54 ~G~D~~iD~~-~kpwLLEVN~~P~ 76 (148)
|-+|+-++.+ .++||||+|.--.
T Consensus 217 ~v~DVyi~~~~~~v~LID~NPf~~ 240 (299)
T PF07065_consen 217 YVFDVYITRDKDKVWLIDFNPFGP 240 (299)
T ss_pred EEEEEEEcCCCCeEEEEEecCCcc
Confidence 6789999999 9999999998655
No 85
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=70.94 E-value=18 Score=32.14 Aligned_cols=75 Identities=16% Similarity=0.116 Sum_probs=45.4
Q ss_pred hHHHHHHHH-HHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhcc
Q psy9332 22 TNKLFTNIS-WLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVM 100 (148)
Q Consensus 22 ~~~i~~~i~-~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~ 100 (148)
++.++.++. +|+..|+.+...+ ...+..++=.=||++.+| |.+||.|..=+=-.+..+...++..+++-++..+.
T Consensus 239 t~e~~~~~~~~Iv~ptv~gm~~E---G~~f~GvLy~glMlt~~G-PkViEfN~RFGDPEtq~vL~~l~sdl~~~~~a~~~ 314 (428)
T COG0151 239 TDEVVERAVEEIVEPTVEGMAKE---GYPFRGVLYAGLMLTADG-PKVIEFNARFGDPETQVVLPLLESDLVELLLAAVD 314 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHc---CCCceEEEEeEEEEcCCC-cEEEEEecccCChhHHHHHHhccccHHHHHHHHHh
Confidence 356677776 7888887776665 234445555678999999 99999998532212223333444444444443333
No 86
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=69.80 E-value=3.6 Score=35.71 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=18.6
Q ss_pred eeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 53 CYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 53 l~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
.=|+||++.++| |++||||..+.
T Consensus 253 snGVDfvl~d~g-pyViEVNPR~q 275 (389)
T COG2232 253 SNGVDFVLNDKG-PYVIEVNPRIQ 275 (389)
T ss_pred ccccceEeecCC-cEEEEecCccc
Confidence 346899999886 89999997654
No 87
>PF14243 DUF4343: Domain of unknown function (DUF4343)
Probab=59.96 E-value=11 Score=27.69 Aligned_cols=27 Identities=22% Similarity=0.082 Sum_probs=22.2
Q ss_pred cceeeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 50 CFECYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 50 ~FEl~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
.-.-+.+||.+.++|...|+|+|..=+
T Consensus 91 ~p~~~vlDvg~~~~G~~~lVE~N~~~~ 117 (130)
T PF14243_consen 91 LPPAYVLDVGVTDDGGWALVEANDGWS 117 (130)
T ss_pred CCCeEEEEEEEeCCCCEEEEEecCccc
Confidence 334578999999999999999998543
No 88
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=59.79 E-value=9.2 Score=33.44 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=23.6
Q ss_pred CCcceeee-eeEEEeCCCCcEEEeeccC
Q psy9332 48 KHCFECYG-YDIIIDNQLKPWLIEVNAS 74 (148)
Q Consensus 48 ~~~FEl~G-~D~~iD~~~kpwLLEVN~~ 74 (148)
..--.|+| |||..|.+|++-|+|.|.-
T Consensus 93 ~~~~sLygRfDl~~dg~g~iKLlEyNAD 120 (387)
T COG0754 93 RRDPSLYGRFDLAYDGDGPIKLLEYNAD 120 (387)
T ss_pred ccCcceeeeeEEEecCCCCeEEEEecCC
Confidence 33478899 9999999999999999984
No 89
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=58.33 E-value=8.3 Score=32.52 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.0
Q ss_pred eeeeEEEeCCCCcEEEeeccCCC
Q psy9332 54 YGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 54 ~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
=.|||+|..+.+.|+||+|-.-+
T Consensus 196 KrFDFvi~~~~k~y~IE~NFY~~ 218 (286)
T PF04556_consen 196 KRFDFVIKTNKKIYLIETNFYGS 218 (286)
T ss_pred eEEEEEEEcCCEEEEEEEeeecC
Confidence 44899999999999999998554
No 90
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=56.11 E-value=61 Score=24.91 Aligned_cols=48 Identities=4% Similarity=0.085 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCC-cEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLK-PWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~k-pwLLEVN~~P~l~ 78 (148)
+.+-.+++++..+...+. +...+|++.|.++.+|+ +|+-|+-..|.-+
T Consensus 116 ~~~~~~a~~ia~~i~~~l--------~~vGv~~VE~Fv~~~g~~v~vNEiaPRpHnS 164 (172)
T PF02222_consen 116 DEVEEEAKEIARKIAEAL--------DYVGVLAVEFFVTKDGDEVLVNEIAPRPHNS 164 (172)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TSSEEEEEEEEEETTSTEEEEEEEESS--GG
T ss_pred HHHHHHHHHHHHHHHHHc--------CcEEEEEEEEEEecCCCEEEEEeccCCccCc
Confidence 456677777766664442 46789999999999998 9999998877644
No 91
>PF13020 DUF3883: Domain of unknown function (DUF3883)
Probab=50.75 E-value=14 Score=25.04 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.6
Q ss_pred eeeeeEEEeC-CCCcEEEeeccCC
Q psy9332 53 CYGYDIIIDN-QLKPWLIEVNASP 75 (148)
Q Consensus 53 l~G~D~~iD~-~~kpwLLEVN~~P 75 (148)
-.|+||.+.. ++...+|||.+.-
T Consensus 28 ~~gyDi~~~~~~g~~~~IEVKst~ 51 (91)
T PF13020_consen 28 GLGYDIKSFDEDGEERFIEVKSTT 51 (91)
T ss_pred CCCeEEEEEeCCCCEEEEEEEEEe
Confidence 3899999988 8999999999976
No 92
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=50.26 E-value=12 Score=29.10 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=16.1
Q ss_pred hhhhcCCCCcceeeeeeEEEeCCCCcEEEeecc
Q psy9332 41 SYIMANDKHCFECYGYDIIIDNQLKPWLIEVNA 73 (148)
Q Consensus 41 ~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~ 73 (148)
.|.+..+. .-..|+|++-| +|+|||.
T Consensus 135 ~~~L~~~G--l~f~GiDvig~-----~l~EiNv 160 (173)
T PF02955_consen 135 GPKLREDG--LLFVGIDVIGD-----KLTEINV 160 (173)
T ss_dssp HHHHHHTT----EEEEEEETT-----EEEEEE-
T ss_pred HHHHhhcC--cEEEEEecccc-----ceEEEec
Confidence 44554432 33479998843 9999997
No 93
>PF13635 DUF4143: Domain of unknown function (DUF4143)
Probab=50.21 E-value=15 Score=24.75 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=17.1
Q ss_pred eeeEEEeCCCCcEEEeecc
Q psy9332 55 GYDIIIDNQLKPWLIEVNA 73 (148)
Q Consensus 55 G~D~~iD~~~kpwLLEVN~ 73 (148)
-+||++...++.+.|||..
T Consensus 71 EVDfv~~~~~~~~~IEVK~ 89 (90)
T PF13635_consen 71 EVDFVIENGGRIIPIEVKY 89 (90)
T ss_pred EEEEEEEeCCEEEEEEEEE
Confidence 4799999999999999975
No 94
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=45.81 E-value=17 Score=30.21 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=16.0
Q ss_pred ceeeeeeEEEeCCCCcEEEeecc-CC-CC
Q psy9332 51 FECYGYDIIIDNQLKPWLIEVNA-SP-SL 77 (148)
Q Consensus 51 FEl~G~D~~iD~~~kpwLLEVN~-~P-~l 77 (148)
...-|+|++ .++++|||. +| ++
T Consensus 266 l~~agVDii-----g~~v~EvN~~~p~~~ 289 (312)
T TIGR01380 266 LLFVGIDVI-----GGYLTEVNVTSPTGI 289 (312)
T ss_pred CcEEEEEEe-----CCEEEEEecCCcchH
Confidence 345789998 258999997 46 44
No 95
>KOG2983|consensus
Probab=45.74 E-value=74 Score=27.06 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=19.7
Q ss_pred eeeeEEEeCCCCcEEEeeccCCC
Q psy9332 54 YGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 54 ~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
|-||+-++..+|+|||.+|.--.
T Consensus 231 fvfDVYi~k~~kv~lID~Npf~~ 253 (334)
T KOG2983|consen 231 FVFDVYITKERKVWLIDFNPFCG 253 (334)
T ss_pred eeEEEEecCCCcEEEEeccCccC
Confidence 67899999999999999997533
No 96
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=38.59 E-value=2.2e+02 Score=25.55 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=30.3
Q ss_pred eeEEEeCCCCcEEEeeccCCCCCcCCcchHHH-HHHHHHHHHhhccccc
Q psy9332 56 YDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL-KYKLIDNILNIVMWNK 103 (148)
Q Consensus 56 ~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l-k~~ll~d~l~lv~~~~ 103 (148)
+.|+.|.++++++||+|+. ++..+++.+.+ =-.++...++++....
T Consensus 274 vEfl~~~~~~~yfiEmN~R--lqveh~vte~vtGiDlv~~qi~ia~ge~ 320 (449)
T COG0439 274 VEFLYDSNGEFYFIEMNTR--LQVEHPVTEMVTGIDLVKEQIRIAAGEP 320 (449)
T ss_pred EEEEEeCCCCEEEEEEecc--cccCccceehhhhhhHHHHHHHHHcCCC
Confidence 4567888999999999885 44444443332 3466777777776543
No 97
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=37.79 E-value=39 Score=27.78 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=24.2
Q ss_pred eeEEEeCCC-CcEEEeecc------CCCCCcCCcchH
Q psy9332 56 YDIIIDNQL-KPWLIEVNA------SPSLTCTTVNDR 85 (148)
Q Consensus 56 ~D~~iD~~~-kpwLLEVN~------~P~l~~~~~~~~ 85 (148)
+||++++.. ..|.+||.+ .+++.++++...
T Consensus 116 iDfll~~~~~~~~~vEVK~vtL~~~~~a~FPDApT~R 152 (235)
T COG1489 116 IDFLLDDDERPDCYVEVKSVTLVENGVAMFPDAPTAR 152 (235)
T ss_pred EEEEEcCCCCCceEEEEeeEEEeeCCEEECCCCcchh
Confidence 899999997 899999998 466777766543
No 98
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=36.66 E-value=32 Score=30.35 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.4
Q ss_pred eeEEEeCC-CCcEEEeeccCCCCCcC
Q psy9332 56 YDIIIDNQ-LKPWLIEVNASPSLTCT 80 (148)
Q Consensus 56 ~D~~iD~~-~kpwLLEVN~~P~l~~~ 80 (148)
++|.+|.+ ++.|++|||..+|-++.
T Consensus 270 iQ~av~~~~~~~~viEvNpRvSrssa 295 (400)
T COG0458 270 IQFAVDPGGGELYVIEINPRVSRSSA 295 (400)
T ss_pred eeEEEcCCCceEEEEEecCCcCcchh
Confidence 45678877 69999999998887765
No 99
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=36.53 E-value=38 Score=17.42 Aligned_cols=13 Identities=31% Similarity=0.680 Sum_probs=10.2
Q ss_pred eeEEEeCCCCcEE
Q psy9332 56 YDIIIDNQLKPWL 68 (148)
Q Consensus 56 ~D~~iD~~~kpwL 68 (148)
.++..|.+++.|+
T Consensus 8 ~~i~~D~~G~lWi 20 (24)
T PF07494_consen 8 YSIYEDSDGNLWI 20 (24)
T ss_dssp EEEEE-TTSCEEE
T ss_pred EEEEEcCCcCEEE
Confidence 4678899999998
No 100
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=33.15 E-value=42 Score=26.94 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=18.1
Q ss_pred eeeEEEeCCCCcEEEeeccC
Q psy9332 55 GYDIIIDNQLKPWLIEVNAS 74 (148)
Q Consensus 55 G~D~~iD~~~kpwLLEVN~~ 74 (148)
.+||+++.++..+++||.+.
T Consensus 105 R~Dfll~~~~~~~~vEVKsv 124 (215)
T PF03749_consen 105 RFDFLLEDNGGKCYVEVKSV 124 (215)
T ss_pred cEEEEEEcCCCCEEEEEeee
Confidence 38999999999999999884
No 101
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=32.86 E-value=42 Score=31.24 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=22.2
Q ss_pred Ccceeee-eeEEEeCCCCcEEEeecc-CCC
Q psy9332 49 HCFECYG-YDIIIDNQLKPWLIEVNA-SPS 76 (148)
Q Consensus 49 ~~FEl~G-~D~~iD~~~kpwLLEVN~-~P~ 76 (148)
....++| |||..|.+ .+.|+|.|. +|+
T Consensus 309 ~~~slyGRfDf~~dg~-~~KllEyNADTPT 337 (619)
T PRK10507 309 RHHMITGRMDFCMDER-GLKVYEYNADSAS 337 (619)
T ss_pred CCCceEEEEEEEEcCC-ceEEEEEcCCcch
Confidence 4556899 99999987 699999998 344
No 102
>KOG0238|consensus
Probab=32.63 E-value=71 Score=29.61 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=37.7
Q ss_pred eeEEEeCCCCcEEEeeccCCCCCcCCcchHHHH-HHHHHHHHhhcccccCC
Q psy9332 56 YDIIIDNQLKPWLIEVNASPSLTCTTVNDRILK-YKLIDNILNIVMWNKYK 105 (148)
Q Consensus 56 ~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk-~~ll~d~l~lv~~~~~~ 105 (148)
+.|++|...+-+++|+|+ -|...+|+.+.+- -.|++-++++....+-|
T Consensus 270 VEFi~D~~~~FyFmEmNT--RLQVEHPvTEmItg~DLVewqiRvA~ge~lp 318 (670)
T KOG0238|consen 270 VEFIVDSKDNFYFMEMNT--RLQVEHPVTEMITGTDLVEWQIRVAAGEPLP 318 (670)
T ss_pred EEEEEcCCCcEEEEEeec--eeeecccchhhccchHHHHHHHHHhcCCCCC
Confidence 568999999999999999 4667777776654 57888888888865544
No 103
>PF04471 Mrr_cat: Restriction endonuclease; InterPro: IPR007560 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. This entry represents Mrr, a type IV restriction endonuclease involved in the acceptance of modified foreign DNA, restricting both adenine- and cytosine-methylated DNA. Plasmids carrying HincII, HpaI, and TaqI R and M genes are severely restricted in Escherichia coli strains that are Mrr+ []. Mrr appears to be the final effector of the bacterial SOS response, which is not only a vital reply to DNA damage but also constitutes an essential mechanism for the generation of genetic variability that in turn fuels adaptation and resistance development in bacterial populations []. Mrr possesses a cleavage domain that is similar to that found in type II restriction enzymes, however it has an unusual glutamine residue at the central position of the (D/E)-(D/E)XK hallmark of the active site [].; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0009307 DNA restriction-modification system; PDB: 1Y88_A.
Probab=31.62 E-value=1.2e+02 Score=20.08 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHchhh-hcCCCCcceeeeeeEEEeCCC---CcEEEeeccCCCCCcCCcchHHHHHHHHHH
Q psy9332 27 TNISWLIVHSLKSVSYI-MANDKHCFECYGYDIIIDNQL---KPWLIEVNASPSLTCTTVNDRILKYKLIDN 94 (148)
Q Consensus 27 ~~i~~ii~~t~~a~~~~-l~~~~~~FEl~G~D~~iD~~~---kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d 94 (148)
...+.++...+...--. +.....+-+ .|+|+++..+. ..|++|+.... .++......+++..
T Consensus 7 ~~FE~l~~~ll~~~g~~~v~~~~~~~d-~giDi~~~~~~~~~~~~~vqcK~~~-----~~v~~~~v~~~~~~ 72 (115)
T PF04471_consen 7 REFEELVAELLRKLGYTDVEVTGGSGD-GGIDIIAEKDDLGKERILVQCKRYK-----KKVDVKAVRQLIGK 72 (115)
T ss_dssp -------HHHHHTTT-EEEEEE-SSSE-EEEEEEEEETT---EEEEEEE---S------EE-HHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCccEEEeccCCC-CCEEEEEEEcccCceEEEEEEEEec-----cccchHHHHHHhhh
Confidence 34455566665553222 222233445 69999998754 78999998863 34444444444443
No 104
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=31.28 E-value=64 Score=29.13 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=27.5
Q ss_pred CCCcceeeeeeEEEeCCCCcEEEeeccC-CCCCc
Q psy9332 47 DKHCFECYGYDIIIDNQLKPWLIEVNAS-PSLTC 79 (148)
Q Consensus 47 ~~~~FEl~G~D~~iD~~~kpwLLEVN~~-P~l~~ 79 (148)
......+.|+|++-+.+|+.|+||=|.. ||=.+
T Consensus 141 ~g~y~H~~g~dl~R~~dG~~~VLeDn~r~PSGvs 174 (488)
T COG2308 141 GGHYLHVCGTDLIRDPDGNFQVLEDNLRAPSGVS 174 (488)
T ss_pred CceEEEEeeeheeECCCCCEEEecccCcCCCchh
Confidence 5668888999999999999999999984 55433
No 105
>TIGR00372 cas4 CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.
Probab=29.59 E-value=1.2e+02 Score=22.44 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=25.0
Q ss_pred CCcceeee-eeEEEeCCCCcEEEeeccCCCCC
Q psy9332 48 KHCFECYG-YDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 48 ~~~FEl~G-~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
...+.+.| +|++...++.+.++|+.++-...
T Consensus 62 ~~~~~l~G~iD~i~~~~~~~~ive~Ktg~~~~ 93 (178)
T TIGR00372 62 SKKLGLKGVIDVVLEADGELVPVEVKSGKPKL 93 (178)
T ss_pred cccCCcEEEEEEEEEECCeEEEEEEecCCCCC
Confidence 44578899 89999889999999999974443
No 106
>PRK05883 acyl carrier protein; Validated
Probab=29.38 E-value=56 Score=22.42 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeee
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYD 57 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D 57 (148)
.+.|..++..++...+-.-...+....+.++.+|+|
T Consensus 12 ~~~I~~~l~~iia~~l~v~~~~I~~d~~l~~dlg~D 47 (91)
T PRK05883 12 PSTVSATLLSILRDDLNVDLTRVTPDARLVDDVGLD 47 (91)
T ss_pred HHHHHHHHHHHHHHHhCCChhhCCCCCchhhccCCC
Confidence 378999999999988754445566666666888876
No 107
>cd00228 eu-GS Eukaryotic Glutathione Synthetase (eu-GS); catalyses the production of glutathione from gamma-glutamylcysteine and glycine in an ATP-dependent manner. Belongs to the ATP-grasp superfamily.
Probab=29.22 E-value=1.6e+02 Score=26.58 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=28.7
Q ss_pred CCCcceeeeeeEEEeCC---CCcEEEeeccC-CCCCcCCcchHHHHHH
Q psy9332 47 DKHCFECYGYDIIIDNQ---LKPWLIEVNAS-PSLTCTTVNDRILKYK 90 (148)
Q Consensus 47 ~~~~FEl~G~D~~iD~~---~kpwLLEVN~~-P~l~~~~~~~~~lk~~ 90 (148)
.+-...++.=|+|+|.. ..+..+|+|+- -||..-+.....+..-
T Consensus 112 q~~~Lgl~RSDYMl~~~~~~~~~kQVE~NTIS~sfg~ls~~v~~lH~~ 159 (471)
T cd00228 112 QPVRLGIFRSDYMFDEKDGTKGLKQIEINTISSSFGGLSSRVTELHRY 159 (471)
T ss_pred CceEEeeeehhcccCCccCCCceeEEEEeeeeeccchHHHHHHHHHHH
Confidence 34566677779999987 57899999993 4444444333333333
No 108
>PF06319 DUF1052: Protein of unknown function (DUF1052); InterPro: IPR009394 This entry is represented by Ralstonia phage RSL1, Orf212. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function.; PDB: 3DNX_A.
Probab=28.31 E-value=50 Score=25.53 Aligned_cols=26 Identities=15% Similarity=0.503 Sum_probs=14.8
Q ss_pred eeEE-EeCCCCcEEEeeccC-CCCCcCC
Q psy9332 56 YDII-IDNQLKPWLIEVNAS-PSLTCTT 81 (148)
Q Consensus 56 ~D~~-iD~~~kpwLLEVN~~-P~l~~~~ 81 (148)
.|+| ++.+|.+|++||.++ .+|..+.
T Consensus 51 aDv~al~~kGeI~ivEIKSs~~DF~~D~ 78 (157)
T PF06319_consen 51 ADVMALGPKGEIWIVEIKSSRADFRSDR 78 (157)
T ss_dssp EEEEEE-TT--EEEEEE-SSHHHHHHTT
T ss_pred EEEEEECCCCeEEEEEEEcCHHHhhccC
Confidence 4654 688899999999986 3343333
No 109
>KOG3895|consensus
Probab=26.37 E-value=1.2e+02 Score=26.91 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=39.7
Q ss_pred CCcceeee------eeEEEeCCCCcEEEeeccC--CCCCcCCcchHHHHHHHHHHHHhhccc
Q psy9332 48 KHCFECYG------YDIIIDNQLKPWLIEVNAS--PSLTCTTVNDRILKYKLIDNILNIVMW 101 (148)
Q Consensus 48 ~~~FEl~G------~D~~iD~~~kpwLLEVN~~--P~l~~~~~~~~~lk~~ll~d~l~lv~~ 101 (148)
..|-|+|| +|.+...+|+-+++|||.+ |-+....+-|+.++..|+...+.-...
T Consensus 334 dtcse~fGgldICav~alhsKdGrd~i~eV~d~smpliGeh~eeDrql~~~Lvvskmaq~l~ 395 (488)
T KOG3895|consen 334 DTCSEMFGGLDICAVKALHSKDGRDYIIEVMDSSMPLIGEHQEEDRQLISELVVSKMAQLLT 395 (488)
T ss_pred HHHHHhcCCcceEEeeeeecccchhheeeeccccccccccchhHHHHHHHHHHHHHhhhccC
Confidence 45666666 4677889999999999983 666555667788888887776665553
No 110
>PHA02762 hypothetical protein; Provisional
Probab=25.79 E-value=77 Score=20.38 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=18.3
Q ss_pred eEEEeCCCCcEEEeeccCCCCC
Q psy9332 57 DIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 57 D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
.+.+|.++--.++|+|.+|--+
T Consensus 2 ki~idn~fgnlii~~~rs~~ks 23 (62)
T PHA02762 2 KILIDNDFGNLIIEFKRNVEKS 23 (62)
T ss_pred eEEecCCCccEEEEEecCcccc
Confidence 4688999999999999988544
No 111
>PF08972 DUF1902: Domain of unknown function (DUF1902); InterPro: IPR015066 Members of these prokaryotic proteins adopt a fold consisting of one alpha-helix and four beta-strands. Their function has not, as yet, been elucidated []. ; PDB: 1WV8_A.
Probab=25.10 E-value=1.9e+02 Score=18.41 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=29.7
Q ss_pred eeEEEeCCCCcEEEeeccCCCCCcCCcchHHH---HHHHHHHHHhhcc
Q psy9332 56 YDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL---KYKLIDNILNIVM 100 (148)
Q Consensus 56 ~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l---k~~ll~d~l~lv~ 100 (148)
+...-|++-.+|+-+...-|+|....+....+ .+.|+.+++.+-.
T Consensus 3 I~a~wD~EA~VWvA~s~dvpGLvtEA~Tle~L~~kl~~~ipeLLelN~ 50 (54)
T PF08972_consen 3 IRAFWDEEAGVWVATSDDVPGLVTEADTLEELIEKLRVMIPELLELNG 50 (54)
T ss_dssp EEEEEETTTTEEEEE-SSSTT---EESSHHHHHHHHHHHHHHHHHHS-
T ss_pred EEEEEcCCCCEEEEecCCCccceecCccHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999877665444 4566666665543
No 112
>COG5321 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.04 E-value=59 Score=24.80 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHchhhhcCC-CCcceeeeeeEEEeCCCCcEEEeeccC-CCCCcCCcchHHHHHHHHHHHHhhccc
Q psy9332 24 KLFTNISWLIVHSLKSVSYIMAND-KHCFECYGYDIIIDNQLKPWLIEVNAS-PSLTCTTVNDRILKYKLIDNILNIVMW 101 (148)
Q Consensus 24 ~i~~~i~~ii~~t~~a~~~~l~~~-~~~FEl~G~D~~iD~~~kpwLLEVN~~-P~l~~~~~~~~~lk~~ll~d~l~lv~~ 101 (148)
.+...++.+....=.++.|++.-- ...-.|+ -+..+|.+|++||.++ -.+..+.+... ..+.+|-+-....
T Consensus 23 ~VrRGvqrLl~~mg~a~LpEltLasGRRADLi----als~kGeiwIiEiKssiEDfrvDrKWpd---Yr~~cDr~fFAth 95 (164)
T COG5321 23 LVRRGVQRLLMAMGHAVLPELTLASGRRADLI----ALSPKGEIWIIEIKSSIEDFRVDRKWPD---YRLHCDRLFFATH 95 (164)
T ss_pred HHHHhHHHHHHHhccccCccccccCCccccee----eecCCCcEEEEEeecchhhhcccccCcc---hhhhchheeeecc
Confidence 345555555555445566666532 2233332 3678999999999985 23333332221 3455565555554
Q ss_pred ccCC
Q psy9332 102 NKYK 105 (148)
Q Consensus 102 ~~~~ 105 (148)
+..|
T Consensus 96 p~vP 99 (164)
T COG5321 96 PSVP 99 (164)
T ss_pred CCCc
Confidence 4444
No 113
>KOG2870|consensus
Probab=24.04 E-value=1e+02 Score=26.97 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHchhh-hcC-------CCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYI-MAN-------DKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDN 94 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~-l~~-------~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d 94 (148)
..+|..|+..|.+-=...+.. +.+ ...--| ||+=++-|..++||--.|- .|++.+...+++..|.-|+.|
T Consensus 358 ~~mk~~mE~lihhfk~~t~gf~vppg~tY~avEaPKGE-fGvfLisdgS~rPyRckIr-apgfahla~l~~m~k~h~lAD 435 (452)
T KOG2870|consen 358 AEMKESMESLIHHFKLFTEGFQVPPGATYVAVEAPKGE-FGVFLISDGSGRPYRCKIR-APGFAHLAALDKMSKRHMLAD 435 (452)
T ss_pred chhhhhhHHHhhhccccCcccccCCCceeEEeecCCCc-eeEEEEecCCCCceeeeec-CCchHHHHHHHHHHHhhhHHH
Confidence 457777777666532222211 111 122233 7888888999999998874 599999999999999999999
Q ss_pred HHhhcc
Q psy9332 95 ILNIVM 100 (148)
Q Consensus 95 ~l~lv~ 100 (148)
.+.+++
T Consensus 436 vvaIiG 441 (452)
T KOG2870|consen 436 VVAIIG 441 (452)
T ss_pred HHHhhc
Confidence 999887
No 114
>PF03917 GSH_synth_ATP: Eukaryotic glutathione synthase, ATP binding domain; InterPro: IPR005615 This entry represents eukaryotic glutathione synthetase (6.3.2.3 from EC) (GSS), a homodimeric enzyme that catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to phosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis, the first step being catalysed by gamma-glutamylcysteine synthetase []. In humans, defects in GSS are inherited in an autosomal recessive way and are the cause of severe metabolic acidosis, 5-oxoprolinuria, and increased rate of haemolysis and defective function of the central nervous system. ; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 3KAJ_A 3KAL_A 3KAK_A 2WYO_A 2HGS_A 1M0W_B 1M0T_A.
Probab=23.55 E-value=1.8e+02 Score=25.31 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=19.8
Q ss_pred CCcceeeeeeEEEe---CCCCcEEEeecc
Q psy9332 48 KHCFECYGYDIIID---NQLKPWLIEVNA 73 (148)
Q Consensus 48 ~~~FEl~G~D~~iD---~~~kpwLLEVN~ 73 (148)
+-+..++.=|+|+| ....+-.+|+|+
T Consensus 117 ~i~Lgi~RSDYMl~~~~~~~~~KQVE~NT 145 (370)
T PF03917_consen 117 PISLGIFRSDYMLDQDDGSPSLKQVEFNT 145 (370)
T ss_dssp SEEEEEEEEEEEEEEETTCEEEEEEEEE-
T ss_pred CeEEEEeechhcccccCCCCceEEEEecc
Confidence 44566777799999 566788999999
No 115
>PHA00691 hypothetical protein
Probab=22.27 E-value=52 Score=21.46 Aligned_cols=11 Identities=9% Similarity=0.413 Sum_probs=9.5
Q ss_pred eCCCCcEEEee
Q psy9332 61 DNQLKPWLIEV 71 (148)
Q Consensus 61 D~~~kpwLLEV 71 (148)
-+||++|+||-
T Consensus 10 ~ENGr~WVL~K 20 (68)
T PHA00691 10 YENGRVWVLKK 20 (68)
T ss_pred ccCCeEEEEEe
Confidence 57999999993
No 116
>PLN02977 glutathione synthetase
Probab=20.69 E-value=3.8e+02 Score=24.27 Aligned_cols=46 Identities=15% Similarity=0.087 Sum_probs=29.4
Q ss_pred CCCcceeeeeeEEEeCC-CCcEEEeeccC-CCCCcCCcchHHHHHHHH
Q psy9332 47 DKHCFECYGYDIIIDNQ-LKPWLIEVNAS-PSLTCTTVNDRILKYKLI 92 (148)
Q Consensus 47 ~~~~FEl~G~D~~iD~~-~kpwLLEVN~~-P~l~~~~~~~~~lk~~ll 92 (148)
.+-...++.=|+|+|.. +.+-.+|+|+- =||..-+.....+..-|+
T Consensus 121 q~~~Lgl~RSDYMld~~~~~~KQVE~NTIS~sfggls~~v~~lH~~l~ 168 (478)
T PLN02977 121 EDIRLGLHRSDYMLDEPTGLLLQVELNTISSSFPGLSSLVSQLHRSLL 168 (478)
T ss_pred CceEEeeeehhhcccCCCCCeEEEEEeeeeeccchhHHHHHHHHHHHH
Confidence 34566677789999976 55689999993 445444444444444333
No 117
>PF14005 YpjP: YpjP-like protein
Probab=20.24 E-value=1.4e+02 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=17.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHc
Q psy9332 18 GKDITNKLFTNISWLIVHSLKSV 40 (148)
Q Consensus 18 G~d~~~~i~~~i~~ii~~t~~a~ 40 (148)
+.++.+.|+|+|+.+|..++...
T Consensus 33 edef~~~IlPkie~~I~~~~~~~ 55 (136)
T PF14005_consen 33 EDEFREEILPKIEEAIEDLLEQY 55 (136)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhC
Confidence 34456789999999999887554
No 118
>PRK12449 acyl carrier protein; Provisional
Probab=20.13 E-value=77 Score=20.55 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeee
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYD 57 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D 57 (148)
+.++.++++++...+--....+......++-+|+|
T Consensus 4 ~~i~~~l~~il~~~~~~~~~~i~~~~~l~~dlg~D 38 (80)
T PRK12449 4 EEIFERLINLIQKQRSYLSLAITEQTHLKDDLAVD 38 (80)
T ss_pred HHHHHHHHHHHHHHhCCCccccCCCCcHHHHcCCc
Confidence 56788888888876543233344434444556654
Done!