Query psy9332
Match_columns 148
No_of_seqs 127 out of 1094
Neff 6.2
Searched_HMMs 29240
Date Sat Aug 17 00:38:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 99.9 2.3E-21 7.8E-26 165.1 11.1 100 1-108 264-366 (380)
2 4fu0_A D-alanine--D-alanine li 98.4 2.1E-06 7.1E-11 71.0 10.0 74 22-103 272-351 (357)
3 4eg0_A D-alanine--D-alanine li 98.0 2.7E-05 9.3E-10 62.7 9.4 69 23-99 240-314 (317)
4 3se7_A VANA; alpha-beta struct 98.0 3.2E-05 1.1E-09 63.3 9.4 71 22-100 265-341 (346)
5 3tqt_A D-alanine--D-alanine li 98.0 3.4E-05 1.2E-09 64.6 9.5 71 22-100 276-352 (372)
6 3k3p_A D-alanine--D-alanine li 97.9 4.3E-05 1.5E-09 64.2 9.3 70 23-100 297-372 (383)
7 3i12_A D-alanine-D-alanine lig 97.9 5.3E-05 1.8E-09 62.7 9.7 70 23-100 276-351 (364)
8 1e4e_A Vancomycin/teicoplanin 97.9 5.2E-05 1.8E-09 61.8 9.5 53 23-83 266-318 (343)
9 3e5n_A D-alanine-D-alanine lig 97.9 4.6E-05 1.6E-09 63.9 9.2 72 22-101 294-371 (386)
10 2i87_A D-alanine-D-alanine lig 97.9 7.3E-05 2.5E-09 61.5 9.5 52 23-82 267-318 (364)
11 1iow_A DD-ligase, DDLB, D-ALA\ 97.8 0.00015 5.3E-09 57.1 9.5 51 23-81 231-281 (306)
12 2fb9_A D-alanine:D-alanine lig 97.7 0.00011 3.7E-09 59.7 8.5 52 23-83 247-298 (322)
13 3lwb_A D-alanine--D-alanine li 97.7 0.00011 3.7E-09 61.3 8.3 71 22-101 291-367 (373)
14 1z2n_X Inositol 1,3,4-trisphos 97.6 0.00012 4.2E-09 58.6 7.2 49 27-84 259-308 (324)
15 1ehi_A LMDDL2, D-alanine:D-lac 97.6 0.00039 1.3E-08 57.7 10.2 51 23-81 277-327 (377)
16 3r5x_A D-alanine--D-alanine li 97.6 0.00035 1.2E-08 55.5 8.8 70 22-100 224-299 (307)
17 2q7d_A Inositol-tetrakisphosph 97.5 0.0003 1E-08 58.5 8.3 51 26-85 270-321 (346)
18 2pvp_A D-alanine-D-alanine lig 97.3 0.00032 1.1E-08 58.4 5.8 65 23-98 282-346 (367)
19 2r85_A PURP protein PF1517; AT 97.1 0.00097 3.3E-08 53.1 6.1 53 23-78 239-291 (334)
20 3ax6_A Phosphoribosylaminoimid 97.0 0.0014 4.7E-08 53.8 7.0 50 23-80 218-267 (380)
21 1uc8_A LYSX, lysine biosynthes 96.9 0.0016 5.5E-08 50.3 6.0 44 26-79 215-258 (280)
22 3k5i_A Phosphoribosyl-aminoimi 96.5 0.007 2.4E-07 50.5 7.6 48 23-78 248-295 (403)
23 3q2o_A Phosphoribosylaminoimid 96.5 0.0057 2E-07 50.4 6.8 51 22-80 234-284 (389)
24 1pk8_A RAT synapsin I; ATP bin 96.4 0.0073 2.5E-07 51.9 6.9 61 25-93 350-412 (422)
25 2z04_A Phosphoribosylaminoimid 96.3 0.0069 2.4E-07 49.2 6.4 47 26-80 214-260 (365)
26 1i7n_A Synapsin II; synapse, p 96.1 0.0079 2.7E-07 49.4 5.8 37 50-86 255-293 (309)
27 3vot_A L-amino acid ligase, BL 96.1 0.013 4.4E-07 48.7 6.9 49 23-78 246-294 (425)
28 4e4t_A Phosphoribosylaminoimid 96.0 0.016 5.4E-07 48.8 7.2 49 23-79 260-308 (419)
29 3aw8_A PURK, phosphoribosylami 96.0 0.015 5E-07 47.4 6.5 50 23-81 220-269 (369)
30 3df7_A Putative ATP-grAsp supe 95.9 0.012 4E-07 47.4 5.8 48 23-79 206-253 (305)
31 1ulz_A Pyruvate carboxylase N- 95.9 0.019 6.7E-07 48.0 7.1 48 23-78 248-295 (451)
32 2vpq_A Acetyl-COA carboxylase; 95.9 0.017 5.9E-07 48.3 6.7 48 23-78 248-296 (451)
33 1vkz_A Phosphoribosylamine--gl 95.8 0.018 6.2E-07 47.9 6.6 53 23-79 242-294 (412)
34 1kjq_A GART 2, phosphoribosylg 95.7 0.02 7E-07 46.6 6.5 48 22-78 239-286 (391)
35 2p0a_A Synapsin-3, synapsin II 95.6 0.015 5.2E-07 48.5 5.2 49 50-98 272-323 (344)
36 3mjf_A Phosphoribosylamine--gl 95.5 0.013 4.5E-07 49.4 4.7 76 22-100 243-319 (431)
37 3orq_A N5-carboxyaminoimidazol 95.5 0.023 7.8E-07 46.9 6.0 45 26-78 234-278 (377)
38 2dwc_A PH0318, 433AA long hypo 95.2 0.034 1.2E-06 46.2 6.3 47 23-78 253-299 (433)
39 3ouz_A Biotin carboxylase; str 95.1 0.049 1.7E-06 45.6 7.1 69 23-101 253-322 (446)
40 3glk_A Acetyl-COA carboxylase 95.0 0.052 1.8E-06 47.5 7.1 48 23-78 321-368 (540)
41 1w96_A ACC, acetyl-coenzyme A 94.9 0.058 2E-06 46.8 7.0 48 23-78 327-375 (554)
42 2xcl_A Phosphoribosylamine--gl 94.8 0.053 1.8E-06 44.8 6.4 30 49-79 263-292 (422)
43 2ip4_A PURD, phosphoribosylami 94.8 0.061 2.1E-06 44.4 6.7 52 23-78 233-285 (417)
44 2yw2_A Phosphoribosylamine--gl 94.8 0.055 1.9E-06 44.7 6.3 52 23-78 239-291 (424)
45 3jrx_A Acetyl-COA carboxylase 94.6 0.069 2.4E-06 47.4 6.9 48 23-78 337-384 (587)
46 2yrx_A Phosphoribosylglycinami 94.5 0.068 2.3E-06 44.8 6.4 52 23-78 260-312 (451)
47 3lp8_A Phosphoribosylamine-gly 94.5 0.027 9.3E-07 47.6 3.9 53 22-78 259-312 (442)
48 4dim_A Phosphoribosylglycinami 94.5 0.07 2.4E-06 43.6 6.3 48 23-78 236-283 (403)
49 2w70_A Biotin carboxylase; lig 94.4 0.081 2.8E-06 44.1 6.5 47 23-78 250-296 (449)
50 2qk4_A Trifunctional purine bi 94.3 0.082 2.8E-06 44.3 6.3 52 23-78 266-318 (452)
51 3eth_A Phosphoribosylaminoimid 94.1 0.092 3.2E-06 43.4 6.3 49 23-80 200-248 (355)
52 2dzd_A Pyruvate carboxylase; b 93.6 0.14 4.9E-06 42.8 6.6 47 23-78 254-300 (461)
53 3ln7_A Glutathione biosynthesi 93.3 0.051 1.7E-06 49.6 3.6 51 20-79 674-732 (757)
54 3ln6_A Glutathione biosynthesi 93.2 0.058 2E-06 49.2 3.7 51 20-79 668-726 (750)
55 3vmm_A Alanine-anticapsin liga 93.2 0.12 4.2E-06 44.2 5.6 46 23-76 286-332 (474)
56 2pn1_A Carbamoylphosphate synt 93.1 0.11 3.7E-06 41.2 4.7 27 49-76 247-273 (331)
57 3u9t_A MCC alpha, methylcroton 92.2 0.11 3.8E-06 46.5 4.2 70 22-101 274-344 (675)
58 3n6r_A Propionyl-COA carboxyla 92.1 0.17 5.7E-06 45.5 5.1 71 22-102 248-319 (681)
59 2qf7_A Pyruvate carboxylase pr 91.5 0.34 1.2E-05 46.2 6.7 49 23-79 268-317 (1165)
60 1a9x_A Carbamoyl phosphate syn 91.4 0.37 1.3E-05 45.2 6.9 46 23-77 803-848 (1073)
61 4ffl_A PYLC; amino acid, biosy 90.6 0.42 1.5E-05 38.5 5.7 42 27-77 205-247 (363)
62 1a9x_A Carbamoyl phosphate syn 89.4 0.74 2.5E-05 43.2 7.0 47 22-76 257-305 (1073)
63 2r7k_A 5-formaminoimidazole-4- 87.4 1.1 3.6E-05 37.2 6.0 53 23-77 265-317 (361)
64 3hbl_A Pyruvate carboxylase; T 87.0 1.1 3.9E-05 42.6 6.6 47 23-78 252-298 (1150)
65 1gsa_A Glutathione synthetase; 86.8 0.55 1.9E-05 36.3 3.8 42 26-78 248-291 (316)
66 3va7_A KLLA0E08119P; carboxyla 86.1 1.4 4.7E-05 42.4 6.7 70 22-101 276-347 (1236)
67 3t7a_A Inositol pyrophosphate 80.7 5.7 0.0002 32.9 7.5 50 24-83 249-298 (330)
68 2pbz_A Hypothetical protein; N 69.3 7.7 0.00026 31.5 5.4 50 23-76 221-270 (320)
69 2io8_A Bifunctional glutathion 44.3 12 0.00041 33.3 2.6 22 52-74 312-334 (619)
70 2vob_A Trypanothione synthetas 42.4 16 0.00054 32.8 3.1 23 52-74 324-348 (652)
71 4e9m_A Nucleotide-binding olig 39.1 1.6 5.3E-05 32.2 -3.3 19 63-81 105-123 (144)
72 3n6x_A Putative glutathionylsp 37.2 23 0.00078 30.6 3.2 27 50-76 141-168 (474)
73 3kal_A Homoglutathione synthet 33.7 81 0.0028 27.4 6.1 27 48-74 146-173 (499)
74 3dnx_A Uncharacterized protein 22.5 55 0.0019 24.1 2.6 23 60-82 48-71 (153)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=99.85 E-value=2.3e-21 Score=165.11 Aligned_cols=100 Identities=21% Similarity=0.416 Sum_probs=89.7
Q ss_pred CccHHHHHHHHHhhccCCcchhHHHHHHHHHHHHHHHHHchhhhcCC---CCcceeeeeeEEEeCCCCcEEEeeccCCCC
Q psy9332 1 MRLLKQIISHSSQVYPRGKDITNKLFTNISWLIVHSLKSVSYIMAND---KHCFECYGYDIIIDNQLKPWLIEVNASPSL 77 (148)
Q Consensus 1 ~~~l~q~~~~L~~~~~~G~d~~~~i~~~i~~ii~~t~~a~~~~l~~~---~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l 77 (148)
+|++++|.+||.+.+ |.++.+.||++|++++++++.|+++.+... .+|||+||+|||||++++|||||||++|++
T Consensus 264 ~~~~~~f~~yL~~~~--~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~ 341 (380)
T 3tig_A 264 EMFFEEFNQYLVTSL--NINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPAC 341 (380)
T ss_dssp CBCHHHHHHHHSTTS--SCCHHHHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCC
T ss_pred cCcHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCc
Confidence 488999999997643 777777999999999999999999988753 589999999999999999999999999999
Q ss_pred CcCCcchHHHHHHHHHHHHhhcccccCCCCC
Q psy9332 78 TCTTVNDRILKYKLIDNILNIVMWNKYKKAD 108 (148)
Q Consensus 78 ~~~~~~~~~lk~~ll~d~l~lv~~~~~~~~~ 108 (148)
.. .+.++|+++++++++++-++++.
T Consensus 342 ~q------~~i~~l~~~~~~iavdp~f~~~~ 366 (380)
T 3tig_A 342 AQ------KLYAELCKGIVDLAISSVFPLNE 366 (380)
T ss_dssp CT------TTHHHHHHHHHHHTTTTTSCCCC
T ss_pred cH------HhHHHHHHHHHHHhcccccCCcc
Confidence 74 38899999999999999999873
No 2
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.36 E-value=2.1e-06 Score=70.96 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNI 95 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~ 95 (148)
.+.+..+|++++.+++.+. +|-.+.++||++|+++++|++|||+.|+|+..+-+.+.. .+.|+..+
T Consensus 272 ~~~~~~~i~~~A~~~~~aL--------g~~G~~~VDf~~~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~~~li~~l 343 (357)
T 4fu0_A 272 DAEAEKRIQEAAVTIYKAL--------GCSGFSRVDMFYTPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKL 343 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCcceEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCHHHHHHHH
Confidence 3567888888888887663 455778899999999999999999999999887655443 35788888
Q ss_pred Hhhccccc
Q psy9332 96 LNIVMWNK 103 (148)
Q Consensus 96 l~lv~~~~ 103 (148)
+++.+.++
T Consensus 344 i~~aler~ 351 (357)
T 4fu0_A 344 IGLYVELE 351 (357)
T ss_dssp HHTTC---
T ss_pred HHHHhccc
Confidence 88887654
No 3
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.02 E-value=2.7e-05 Score=62.73 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHHH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNIL 96 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~l 96 (148)
+.+..++.+++.+++.+. +|....++||++|.++++|++|||+.|+++..+.+.... ...++..++
T Consensus 240 ~~~~~~l~~~a~~~~~~l--------g~~G~~~vD~~~~~~g~~~vlEiN~~pg~t~~s~~p~~~~~~G~~~~~l~~~li 311 (317)
T 4eg0_A 240 AEQETELKRIARRAFDVL--------GCTDWGRADFMLDAAGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 311 (317)
T ss_dssp HHHHHHHHHHHHHHHHTT--------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--------CCCceEEEEEEEeCCCCEEEEEeeCCCCCCcccHHHHHHHHcCCCHHHHHHHHH
Confidence 456777777777765443 444578899999999999999999999999887554322 345555555
Q ss_pred hhc
Q psy9332 97 NIV 99 (148)
Q Consensus 97 ~lv 99 (148)
+..
T Consensus 312 ~~a 314 (317)
T 4eg0_A 312 SLT 314 (317)
T ss_dssp HTT
T ss_pred HHH
Confidence 543
No 4
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=97.98 E-value=3.2e-05 Score=63.30 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNI 95 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~ 95 (148)
.+.+..+|++++.+++.+. +|..++++||++|+++++|++|||+.|+++..+.+.... ...++..+
T Consensus 265 ~~~~~~~i~~~a~~~~~~l--------g~~G~~~vD~~~~~~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~~l~~~l 336 (346)
T 3se7_A 265 STTSRSLVQDTAKAVYRAL--------GCRGLSRVDLFLTEDGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRADVIDRL 336 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEECTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCceEEEEEEEEeCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 3567778888887776554 444778999999999999999999999998877554322 24455555
Q ss_pred Hhhcc
Q psy9332 96 LNIVM 100 (148)
Q Consensus 96 l~lv~ 100 (148)
++...
T Consensus 337 i~~a~ 341 (346)
T 3se7_A 337 VSLAL 341 (346)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 5
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=97.97 E-value=3.4e-05 Score=64.57 Aligned_cols=71 Identities=18% Similarity=0.363 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNI 95 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~ 95 (148)
.+.+..+|++++.+++.+. +|..+.++||++|+++++|++|||+.|+|+..+-+.... .+.++..+
T Consensus 276 ~~~~~~~i~~~a~~~~~aL--------g~~G~~rvDf~~~~dg~~~vlEINt~PG~t~~S~~p~~~~~~G~~~~~li~~l 347 (372)
T 3tqt_A 276 SESVTKQIQQIAIDAFKMV--------HCSGMARVDFFVTPNNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQL 347 (372)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCccEEEEEEEEeCCCcEEEEEEECCCCcCccCHHHHHHHHhCCCHHHHHHHH
Confidence 3567888888888877653 455778899999999999999999999999887553322 34555555
Q ss_pred Hhhcc
Q psy9332 96 LNIVM 100 (148)
Q Consensus 96 l~lv~ 100 (148)
+++..
T Consensus 348 i~~a~ 352 (372)
T 3tqt_A 348 IELAI 352 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 6
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=97.92 E-value=4.3e-05 Score=64.24 Aligned_cols=70 Identities=14% Similarity=0.250 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHHH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNIL 96 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~l 96 (148)
+.+..+|++++.+++.+. +|-.+.++||++|+++++|++|||+.|+|+..+.+.+.. .+.++..++
T Consensus 297 ~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~~~g~~~vlEINtrPG~t~~S~~p~~~~a~Gi~~~~li~~li 368 (383)
T 3k3p_A 297 PVIVEKMRDYAATAFRTL--------GCCGLSRCDFFLTEDGKVYLNELNTMPGFTQWSMYPLLWENMGLSYSVLIEELV 368 (383)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCC--CHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--------CCceEEEEEEEEECCCCEEEEEeeCCCCCCcccHHHHHHHHhCCCHHHHHHHHH
Confidence 457778888887776653 455778899999999999999999999999877554332 345555555
Q ss_pred hhcc
Q psy9332 97 NIVM 100 (148)
Q Consensus 97 ~lv~ 100 (148)
++..
T Consensus 369 ~~a~ 372 (383)
T 3k3p_A 369 SLAK 372 (383)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 7
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=97.92 E-value=5.3e-05 Score=62.66 Aligned_cols=70 Identities=13% Similarity=0.307 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHHH
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNIL 96 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~l 96 (148)
+.+..+|++++.+++.+. +|..+.++||++|+++++|++|||+.|+|+..+.+.... .+.++..++
T Consensus 276 ~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~~l~~~li 347 (364)
T 3i12_A 276 SEVNDKIRAIAIQAYQTL--------GCAGMARVDVFLTADNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLI 347 (364)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--------CCceEEEEEEEEecCCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHHHHHHHHH
Confidence 467778888888776653 455778899999999999999999999999877554422 234455554
Q ss_pred hhcc
Q psy9332 97 NIVM 100 (148)
Q Consensus 97 ~lv~ 100 (148)
+...
T Consensus 348 ~~a~ 351 (364)
T 3i12_A 348 ELAL 351 (364)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 8
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.92 E-value=5.2e-05 Score=61.81 Aligned_cols=53 Identities=19% Similarity=0.171 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVN 83 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~ 83 (148)
+.+.++|++++.+++.+. +|..++++||++|.++++|++|||+.|+++..+.+
T Consensus 266 ~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~~ 318 (343)
T 1e4e_A 266 AEERGRIQETVKKIYKTL--------GCRGLARVDMFLQDNGRIVLNEVNTLPGFTSYSRY 318 (343)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCEEEEEEEEEECTTCCEEEEEEESSCCCSTTCHH
T ss_pred HHHHHHHHHHHHHHHHHc--------CCceEEEEEEEEeCCCCEEEEEeeCCCCCCcccHH
Confidence 457778888888876654 35578999999999999999999999999876543
No 9
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=97.91 E-value=4.6e-05 Score=63.92 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNI 95 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~ 95 (148)
.+.+..+|++++.+++.+. +|..+.++||++|+++++|++|||+.|+|+..+.+.+.. .+.++..+
T Consensus 294 ~~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~~dg~~~vlEiN~~PG~t~~S~~p~~~~~~Gi~~~~li~~l 365 (386)
T 3e5n_A 294 DAQTQQRIQQIAVQAYQAL--------GCAGMARVDVFLCADGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRL 365 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEECTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCccEEEEEEEEECCCcEEEEEeECCCCCCccCHHHHHHHHhCCCHHHHHHHH
Confidence 3567778888888776653 455678899999999999999999999999887554432 35556666
Q ss_pred Hhhccc
Q psy9332 96 LNIVMW 101 (148)
Q Consensus 96 l~lv~~ 101 (148)
+++...
T Consensus 366 i~~a~~ 371 (386)
T 3e5n_A 366 IELALE 371 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555553
No 10
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=97.86 E-value=7.3e-05 Score=61.48 Aligned_cols=52 Identities=15% Similarity=0.302 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTV 82 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~ 82 (148)
+.+.++|++++.+++.+. +|..++++||++|+++++|++|||+.|++...+.
T Consensus 267 ~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~viEiN~rpg~t~~s~ 318 (364)
T 2i87_A 267 EDVQLTLRNMALEAFKAT--------DCSGLVRADFFVTEDNQIYINETNAMPGFTAFSM 318 (364)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTSH
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCcEEEEEEEEecCCCEEEEEEeCCCCCCchhH
Confidence 467778888888776654 3447789999999999999999999999987653
No 11
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=97.76 E-value=0.00015 Score=57.06 Aligned_cols=51 Identities=22% Similarity=0.389 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 81 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~ 81 (148)
+.+.+++++++.+++.+. ++...+|+||++|++|++|++|||..|+....+
T Consensus 231 ~~~~~~i~~~a~~~~~~l--------g~~G~~~vD~~~~~~g~~~~iEiN~rpg~~~~s 281 (306)
T 1iow_A 231 ASQEANLQALVLKAWTTL--------GCKGWGRIDVMLDSDGQFYLLEANTSPGMTSHS 281 (306)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEECTTSCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHHHHHHHHc--------CCceEEEEEEEEcCCCCEEEEEecCCCCCCCCC
Confidence 467778888777776553 345578999999999999999999999997654
No 12
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.74 E-value=0.00011 Score=59.69 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVN 83 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~ 83 (148)
+.+.+++++++.+++.+. +|..+.++||++| ++++|++|||+.|++...+-+
T Consensus 247 ~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~t~~s~~ 298 (322)
T 2fb9_A 247 PGTQETVQELALKAYKVL--------GVRGMARVDFFLA-EGELYLNELNTIPGFTPTSMY 298 (322)
T ss_dssp TTHHHHHHHHHHHHHHHH--------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSSSCHH
T ss_pred HHHHHHHHHHHHHHHHHh--------CCceEEEEEEEEE-CCcEEEEEEECCCCCCcccHH
Confidence 456778888888876654 3447789999999 999999999999999877643
No 13
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.71 E-value=0.00011 Score=61.27 Aligned_cols=71 Identities=14% Similarity=0.284 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNI 95 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~ 95 (148)
.+.+..+|++++.+++.+. +|..+.++||++|+++. |++|||+.|+++..+-+.+.. .+.|+..+
T Consensus 291 ~~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~~dg~-~vlEIN~~PG~t~~S~~p~~~~a~Gi~~~~li~~l 361 (373)
T 3lwb_A 291 DDQVAEAIRQLAIRAFAAI--------DCRGLARVDFFLTDDGP-VINEINTMPGFTTISMYPRMWAASGVDYPTLLATM 361 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCSEEEEEEEEETTEE-EEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCccEEEEEEEEECCCC-EEEEecCCCCCCcccHHHHHHHHhCCCHHHHHHHH
Confidence 3567888888888877664 45577899999999999 999999999999877543322 34555565
Q ss_pred Hhhccc
Q psy9332 96 LNIVMW 101 (148)
Q Consensus 96 l~lv~~ 101 (148)
+++...
T Consensus 362 i~~a~~ 367 (373)
T 3lwb_A 362 IETTLA 367 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 14
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=97.63 E-value=0.00012 Score=58.56 Aligned_cols=49 Identities=22% Similarity=0.226 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEe-CCCCcEEEeeccCCCCCcCCcch
Q psy9332 27 TNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLTCTTVND 84 (148)
Q Consensus 27 ~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD-~~~kpwLLEVN~~P~l~~~~~~~ 84 (148)
+++++++.++..+. +|- ..|+||++| ++|++|+||||+.|++.....+.
T Consensus 259 ~~i~~~a~~~~~~l--------g~~-~~~vD~~~~~~~g~~~vlEvN~~Pg~~~~~~~~ 308 (324)
T 1z2n_X 259 AEMRDLAYKVRCAL--------GVQ-LCGIDFIKENEQGNPLVVDVNVFPSYGGKVDFD 308 (324)
T ss_dssp HHHHHHHHHHHHHH--------TCS-EEEEEEECGGGCSSCEEEEEEESCCTTSCBCHH
T ss_pred HHHHHHHHHHHHHh--------CCc-EEeeEEEEEcCCCCEEEEEEcCCCCcCCCCCHH
Confidence 57777777765553 333 589999999 56999999999999999877554
No 15
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=97.61 E-value=0.00039 Score=57.66 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 81 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~ 81 (148)
+.+..+|++++.+++.+. +|-.+.++||++|.++++|++|||+.|++...+
T Consensus 277 ~~~~~~i~~~a~~~~~al--------g~~G~~~vD~~~~~~g~~~vlEiN~rpg~t~~s 327 (377)
T 1ehi_A 277 PEVTKEVKQMALDAYKVL--------NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMS 327 (377)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCCSTTC
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCcEEEEEEEEeCCCCEEEEEEeCCCCCCccc
Confidence 567788888887776553 445788999999999999999999999988765
No 16
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=97.55 E-value=0.00035 Score=55.47 Aligned_cols=70 Identities=20% Similarity=0.337 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH------HHHHHHHH
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL------KYKLIDNI 95 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l------k~~ll~d~ 95 (148)
.+.+..+|++++.+++.+. ++....++||++| ++.+|++|||+.|+++..+.+.... .+.++..+
T Consensus 224 ~~~~~~~i~~~a~~~~~~l--------g~~G~~~vD~~~~-~g~~~vlEiN~rpg~~~~s~~~~~~~~~G~~~~~li~~l 294 (307)
T 3r5x_A 224 PAELKERVNKASLACYKAL--------KCSVYARVDMMVK-DGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMI 294 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCSEEEEEEEEE-TTEEEEEEEESSCCCSTTSHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHh--------CCCceEEEEEEEE-CCeEEEEEEcCCCCCCccCHHHHHHHHcCCCHHHHHHHH
Confidence 3567777777777776553 3334678999999 6999999999999998876443211 34455555
Q ss_pred Hhhcc
Q psy9332 96 LNIVM 100 (148)
Q Consensus 96 l~lv~ 100 (148)
++...
T Consensus 295 l~~a~ 299 (307)
T 3r5x_A 295 IETSL 299 (307)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 17
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=97.52 E-value=0.0003 Score=58.47 Aligned_cols=51 Identities=24% Similarity=0.193 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC-CCCcEEEeeccCCCCCcCCcchH
Q psy9332 26 FTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN-QLKPWLIEVNASPSLTCTTVNDR 85 (148)
Q Consensus 26 ~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~-~~kpwLLEVN~~P~l~~~~~~~~ 85 (148)
-+.+++++.++..+ + +| .++|+|++.|. ++++++||||+.|++.....+..
T Consensus 270 ~~el~~lA~~a~~a----l----Gl-~~~gvDii~~~~~g~~~VlEVN~~PG~~g~~~~~~ 321 (346)
T 2q7d_A 270 DEVIRELSRALRQA----L----GV-SLFGIDIIINNQTGQHAVIDINAFPGYEGVSEFFT 321 (346)
T ss_dssp HHHHHHHHHHHHHH----H----CC-CEEEEEEEECTTTCCEEEEEEEESCCCTTCTTHHH
T ss_pred hHHHHHHHHHHHHH----h----CC-ceEeeEEEeecCCCCEEEEEEeCCccccccchHHH
Confidence 35666666665443 3 23 36899999997 69999999999999998766543
No 18
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.29 E-value=0.00032 Score=58.36 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhh
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNI 98 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~l 98 (148)
+.+.++|++++.+++.+. +|..+.++||++| ++.+|++|||+.|+++..+-+. =.+.++..++..
T Consensus 282 ~~~~~~i~~~a~~~~~aL--------g~~G~~~vDf~~~-~g~~~vlEiN~rpg~t~~s~~p--~~~~l~~~li~~ 346 (367)
T 2pvp_A 282 NALEEQLKENFKKLYSDL--------FDGAIIRCDFFVI-ENEVYLNEINPIPGSLANYLFD--DFKTTLENLAQS 346 (367)
T ss_dssp HHHHHHHHHHHHHHHTTT--------STTCCEEEEEEEE-TTEEEEEEEESSCGGGGGGGSS--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCCEEEEEEEEE-CCeEEEEEEeCCCCCCcccccC--CHHHHHHHHHhC
Confidence 567778888777776543 4556789999999 8999999999999986555333 234455554444
No 19
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.06 E-value=0.00097 Score=53.05 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+.+++++++.+++.+..... ..+...+++||++|.++++|++|||+.|+..
T Consensus 239 ~~~~~~i~~~a~~~~~~l~~~~---~~~~G~~~vd~~~~~~g~~~viEiN~R~g~~ 291 (334)
T 2r85_A 239 ESLLMDVIEAGERVVKAAEELM---GGLWGPFCLEGVFTPDLEFVVFEISARIVAG 291 (334)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHS---SCCCEEEEEEEEECTTSCEEEEEEECSCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHhhc---ccccccEEEEEEECCCCCEEEEEEeCCcCCC
Confidence 4567788887777766543222 1567789999999999999999999999884
No 20
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.04 E-value=0.0014 Score=53.78 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 80 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~ 80 (148)
+.+..++++++.+++.+. ++...+++||++|.++++|++|||..|+.+..
T Consensus 218 ~~~~~~~~~~a~~~~~~l--------g~~G~~~vd~~~~~~g~~~viEiN~R~~~~~~ 267 (380)
T 3ax6_A 218 EKYSKIAREIATSVVEAL--------EGVGIFGIEMFLTKQGEILVNEIAPRPHNSGH 267 (380)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETTSCEEEEEEESSCCGGGT
T ss_pred HHHHHHHHHHHHHHHHHC--------CCeEEEEEEEEEeCCCcEEEEEecCCCCCCce
Confidence 567778888877776654 34568999999999999999999999987653
No 21
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=96.90 E-value=0.0016 Score=50.28 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCc
Q psy9332 26 FTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 26 ~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~ 79 (148)
-+++++++.+++.+. ++ ..+|+||++|+++ +|++|||..|++..
T Consensus 215 ~~~~~~~~~~~~~~l--------g~-g~~~vD~~~~~~g-~~~iEiN~r~g~~~ 258 (280)
T 1uc8_A 215 TEEVARLSVKAAEAV--------GG-GVVAVDLFESERG-LLVNEVNHTMEFKN 258 (280)
T ss_dssp CHHHHHHHHHHHHHT--------TC-SEEEEEEEEETTE-EEEEEEETTCCCTT
T ss_pred CHHHHHHHHHHHHHh--------CC-CeEEEEEEEeCCC-eEEEEEeCCCCccc
Confidence 346666666665543 23 5789999999997 99999999998764
No 22
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=96.52 E-value=0.007 Score=50.55 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..++++++.+++.+. ++..++++||+++.++++|++|||..|+.+
T Consensus 248 ~~~~~~~~~~a~~i~~~L--------g~~G~~~ve~~~~~dg~~~v~EiNpR~~~s 295 (403)
T 3k5i_A 248 DAINQKAQELARKAVAAF--------DGKGVFGVEMFLLEDDSIMLCEIASRIHNS 295 (403)
T ss_dssp HHHHHHHHHHHHHHHHTS--------CCSEEEEEEEEEETTSCEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCCCcEEEEEeecCCCCC
Confidence 567777887777765543 456789999999999999999999999875
No 23
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=96.48 E-value=0.0057 Score=50.42 Aligned_cols=51 Identities=8% Similarity=0.037 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcC
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 80 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~ 80 (148)
.+.+..++++++.+++.+. ++..++++||++|.++++|++|||..|+.+..
T Consensus 234 ~~~~~~~~~~~a~~~~~~l--------g~~G~~~ve~~~~~dg~~~viEiNpR~~~s~~ 284 (389)
T 3q2o_A 234 TEELSQKAIAYAKVLADEL--------ELVGTLAVEMFATADGEIYINELAPRPHNSGH 284 (389)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTSCEEEEEEESSCCGGGT
T ss_pred CHHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCCCCEEEEEeeCCCCCchh
Confidence 3567778887777765553 34568999999999999999999999987643
No 24
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=96.36 E-value=0.0073 Score=51.89 Aligned_cols=61 Identities=11% Similarity=0.120 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeecc--CCCCCcCCcchHHHHHHHHH
Q psy9332 25 LFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNA--SPSLTCTTVNDRILKYKLID 93 (148)
Q Consensus 25 i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~--~P~l~~~~~~~~~lk~~ll~ 93 (148)
+-+.+++++.++..+ + ....+.|+|++.+.+++++++|||. +|++......+...+..+|-
T Consensus 350 lt~e~~elA~kAaka----~----gGldiaGVDlL~s~dG~~~VlEVN~s~~P~~~g~~~~~~~~IA~~ii 412 (422)
T 1pk8_A 350 MSDRYKLWVDTCSEI----F----GGLDICAVEALHGKDGRDHIIEVVGSSMPLIGDHQDEDKQLIVELVV 412 (422)
T ss_dssp CCHHHHHHHHHHTTG----G----GCCSEEEEEEEEETTSCEEEEEEECTTCCCCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----h----CCCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhHHHHHHHHHH
Confidence 334556565555332 2 3478899999999999999999999 99998555444443333333
No 25
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=96.33 E-value=0.0069 Score=49.18 Aligned_cols=47 Identities=4% Similarity=0.017 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcC
Q psy9332 26 FTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 80 (148)
Q Consensus 26 ~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~ 80 (148)
.+++++++.+++.+. ++...+++||++|+++++|++|||..|+....
T Consensus 214 ~~~~~~~~~~~~~~l--------g~~G~~~vd~~~~~~g~~~~iEiN~R~~~~~~ 260 (365)
T 2z04_A 214 LKEAEEITKRLMELL--------DIVGVFTVEFFLLKDGRVLINEFAPRVHNTGH 260 (365)
T ss_dssp CHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTSCEEEEEEESSCCGGGT
T ss_pred HHHHHHHHHHHHHHc--------CCEEEEEEEEEEeCCCcEEEEEeccCcCCCce
Confidence 456666666665542 34467899999999999999999999987543
No 26
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=96.15 E-value=0.0079 Score=49.41 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=30.6
Q ss_pred cceeeeeeEEEeCCCCcEEEeecc--CCCCCcCCcchHH
Q psy9332 50 CFECYGYDIIIDNQLKPWLIEVNA--SPSLTCTTVNDRI 86 (148)
Q Consensus 50 ~FEl~G~D~~iD~~~kpwLLEVN~--~P~l~~~~~~~~~ 86 (148)
...++|+|++.+.+|+++++|||. +|++......+..
T Consensus 255 Gldi~GVDll~~~~g~~~V~EVN~~~~P~~~~~~~~~~~ 293 (309)
T 1i7n_A 255 GLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQ 293 (309)
T ss_dssp CCSEEEEEEEEETTSCEEEEEEECTTCCCCSSCHHHHHH
T ss_pred CCCEEEEEEEEcCCCCEEEEEECCCCCCCccchhhhhHH
Confidence 478899999999999999999999 9999855443333
No 27
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=96.08 E-value=0.013 Score=48.68 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..+|.+++.+++.+. . -.+..+.+||++|.+|+|+++|||..|+-.
T Consensus 246 ~~~~~~i~~~~~~~~~al----g---~~~G~~~ve~~~~~dG~~~~iEiN~R~gG~ 294 (425)
T 3vot_A 246 EETRLAIVKEVTGAVSAL----G---IHQGPAHTELRLDKDGTPYVIEVGARIGGS 294 (425)
T ss_dssp HHHHHHHHHHHHHHHHHT----T---CCSEEEEEEEEECTTCCEEEEEEESSCGGG
T ss_pred HHHHHHHHHHHHHHHHHc----C---CCcceEEEEEEEEeCCcEEEEEEecCCCCC
Confidence 456777777777765543 1 113678899999999999999999999654
No 28
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=96.01 E-value=0.016 Score=48.83 Aligned_cols=49 Identities=6% Similarity=-0.049 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~ 79 (148)
+.+..++++++.+++.+. ++..++++||+++.+++++++|||..|+-+.
T Consensus 260 ~~~~~~~~~~a~~i~~~l--------g~~G~~~vE~~~~~dG~~~v~EiNpR~~~sg 308 (419)
T 4e4t_A 260 TARVEEAQQAAVRIADTL--------GYVGVLCVEFFVLEDGSFVANEMAPRPHNSG 308 (419)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETTCCEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHC--------CCeeEEEEEEEEeCCCCEEEEEEeCCCCCCC
Confidence 567777777777765553 3456899999999999999999999998653
No 29
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=95.96 E-value=0.015 Score=47.39 Aligned_cols=50 Identities=4% Similarity=-0.007 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTT 81 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~ 81 (148)
+.+..++++++.+++.+. ++...+++||+++. +.++++|||..|+.+...
T Consensus 220 ~~~~~~~~~~a~~~~~~l--------g~~G~~~vd~~~~~-~~~~viEiN~R~~~~~~~ 269 (369)
T 3aw8_A 220 EALQKKAEAYALRAMEAL--------DYVGVLALEFFQVG-EELLFNEMAPRVHNSGHW 269 (369)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEET-TEEEEEEEESSCCGGGTT
T ss_pred HHHHHHHHHHHHHHHHHC--------CCeeEEEEEEEEEC-CcEEEEEEeCCcCCccce
Confidence 567778877777776654 34567889999999 899999999999876554
No 30
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=95.92 E-value=0.012 Score=47.42 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~ 79 (148)
+.+.+++.+++.+++.+. +++....|+||++| +++|++|||..|+.+.
T Consensus 206 ~~~~~~i~~~a~~~~~~l-------~g~~G~~~vD~~~~--~~~~viEiNpR~~~~~ 253 (305)
T 3df7_A 206 DEVKREVVEEAVRAVECV-------EGLNGYVGVDIVYS--DQPYVIEINARLTTPV 253 (305)
T ss_dssp HHHHHHHHHHHHHHHTTS-------TTCCEEEEEEEEES--SSEEEEEEESSCCGGG
T ss_pred HHHHHHHHHHHHHHHHHc-------CCCcCceEEEEEEC--CCEEEEEEcCCCCCCH
Confidence 456677777776664332 14456899999996 7899999999999864
No 31
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=95.87 E-value=0.019 Score=47.97 Aligned_cols=48 Identities=13% Similarity=0.201 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+.++|.+++.+++.+. ++-..+++||++|.++++|++|||..|+-.
T Consensus 248 ~~~~~~i~~~a~~~~~~l--------g~~G~~~ve~~~~~~g~~~viEiN~R~~~~ 295 (451)
T 1ulz_A 248 PEKREYYGNIVTKAAKEI--------GYYNAGTMEFIADQEGNLYFIEMNTRIQVE 295 (451)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCcceEEEEEEeCCCCEEEEEeeCCCCcc
Confidence 567778888777776552 233467899999999999999999998643
No 32
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=95.85 E-value=0.017 Score=48.27 Aligned_cols=48 Identities=19% Similarity=0.217 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEe-CCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD-~~~kpwLLEVN~~P~l~ 78 (148)
+.+.++|.+++.+++.+. ++-..+++||++| .++++|++|||..|+-.
T Consensus 248 ~~~~~~i~~~a~~~~~~l--------g~~G~~~ve~~~~~~~g~~~viEiN~R~~~~ 296 (451)
T 2vpq_A 248 DETRREMGNAAVRAAKAV--------NYENAGTIEFIYDLNDNKFYFMEMNTRIQVE 296 (451)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHc--------CCcceEEEEEEEECCCCCEEEEEeeCCCCCc
Confidence 567778888887776552 2335688999999 89999999999998654
No 33
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=95.80 E-value=0.018 Score=47.88 Aligned_cols=53 Identities=13% Similarity=0.092 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~ 79 (148)
+.+..++++++.+++.+.... ..++-..+++||+++.++ ++++|||..|+...
T Consensus 242 ~~~~~~i~~~a~~~~~~l~~~---g~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~~ 294 (412)
T 1vkz_A 242 SDTIKKIEELFDKTLWGVEKE---GYAYRGFLYLGLMLHDGD-PYILEYNVRLGDPE 294 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TCCCEEEEEEEEEEETTE-EEEEEEESSCCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHhc---CCCcEEEEEEEEEEECCC-cEEEEEecCCCCCc
Confidence 567778887777776554211 124457788999999999 99999999998654
No 34
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=95.73 E-value=0.02 Score=46.61 Aligned_cols=48 Identities=10% Similarity=0.184 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
.+.+..++.+++.+++.+. ++...+++||+++++ .+|++|||..|+-+
T Consensus 239 ~~~~~~~~~~~a~~~~~~l--------g~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 286 (391)
T 1kjq_A 239 SPLALERAQEIARKVVLAL--------GGYGLFGVELFVCGD-EVIFSEVSPRPHDT 286 (391)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------CSSEEEEEEEEEETT-EEEEEEEESSCCGG
T ss_pred CHHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCC-cEEEEEEECCCCCC
Confidence 3567778888777776554 245688999999988 89999999999854
No 35
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=95.56 E-value=0.015 Score=48.47 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=35.3
Q ss_pred cceeeeeeEEEeCCCCcEEEeecc--CCCCCcCCcch-HHHHHHHHHHHHhh
Q psy9332 50 CFECYGYDIIIDNQLKPWLIEVNA--SPSLTCTTVND-RILKYKLIDNILNI 98 (148)
Q Consensus 50 ~FEl~G~D~~iD~~~kpwLLEVN~--~P~l~~~~~~~-~~lk~~ll~d~l~l 98 (148)
...+.|+|++.+.+|+++++|||. +|++......+ ..+...+++.+.+.
T Consensus 272 Gldi~GVDll~~~~G~~~VlEVN~~~~P~~~~~~~~~~~~Ia~~ii~~i~~~ 323 (344)
T 2p0a_A 272 GLDICAVKAVHSKDGRDYIIEVMDSSMPLIGEHVEEDRQLMADLVVSKMSQL 323 (344)
T ss_dssp CCSEEEEEEEEETTSCEEEEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEEEcCCCCEEEEEEcCCCCCcccchhhhHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999 99997544333 33444444444333
No 36
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=95.52 E-value=0.013 Score=49.38 Aligned_cols=76 Identities=12% Similarity=0.044 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHH-HHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHHHHHHHHHHhhcc
Q psy9332 22 TNKLFTNISWLIVH-SLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVM 100 (148)
Q Consensus 22 ~~~i~~~i~~ii~~-t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk~~ll~d~l~lv~ 100 (148)
.+.+..++.+.+++ ++.+ ..... -++..++.+||+++++++|++||+|..|+...+..+...+...+++-+++++.
T Consensus 243 ~~~~~~~i~~~i~~~~~~~-~~~~g--~~~~G~~~ve~~~~~~g~~~viEiN~R~G~~~~~~i~~~~g~dl~~~~~~~~~ 319 (431)
T 3mjf_A 243 TDDVHQRVMDQVIWPTVRG-MAAEG--NIYTGFLYAGLMISADGQPKVIEFNCRFGDPETQPIMLRMRSDLVELCLAGTQ 319 (431)
T ss_dssp CHHHHHHHHHHTHHHHHHH-HHHTT--CCCEEEEEEEEEECTTSCEEEEEECGGGSTTTHHHHHHHBCSCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHH-HHHcC--CCcEEEEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHCCCHHHHHHHHHc
Confidence 35666777665333 2222 11111 23346788999999999999999999998333222222233344444444443
No 37
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=95.49 E-value=0.023 Score=46.85 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 26 FTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 26 ~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
..++++++.+++.+ + ++..++++||+++.++++|++|||..|+-+
T Consensus 234 ~~~~~~~a~~i~~~----l----g~~G~~~ve~~~~~~g~~~v~EinpR~~~s 278 (377)
T 3orq_A 234 TAEAKEQVNKIIQS----I----HFIGTFTVEFFIDSNNQLYVNEIAPRPHNS 278 (377)
T ss_dssp HHHHHHHHHHHHTT----S----CCCEEEEEEEEEETTCCEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHH----C----CCeEEEEEEEEEeCCCcEEEEEeeCCcCCC
Confidence 45666666655433 2 456689999999999999999999999844
No 38
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=95.22 E-value=0.034 Score=46.24 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..++++++.+++.+. ++...+++||+++.+ .+|++|||..|+-+
T Consensus 253 ~~~~~~i~~~a~~~~~~l--------g~~G~~~ve~~~~~~-~~~viEiN~R~~~~ 299 (433)
T 2dwc_A 253 EKAEREVYRIAKRITDVL--------GGLGIFGVEMFVKGD-KVWANEVSPRPHDT 299 (433)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CSSEECEEEEEEETT-EEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHHc--------CCeeEEEEEEEEeCC-cEEEEEEeCCcCCC
Confidence 567778887777776554 245678999999988 89999999999854
No 39
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=95.15 E-value=0.049 Score=45.55 Aligned_cols=69 Identities=13% Similarity=0.263 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH-HHHHHHHHHhhccc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL-KYKLIDNILNIVMW 101 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l-k~~ll~d~l~lv~~ 101 (148)
..+..+|.+++.+++.+. ++-..+++||++|.++++|++|||..|+-. .++.... --.+++-.++++..
T Consensus 253 ~~~~~~l~~~a~~~~~~l--------g~~G~~~ve~~~~~~g~~~~iEiNpR~~g~--~~~~~~~~G~dl~~~~~~~~~G 322 (446)
T 3ouz_A 253 EKTRTRLHETAIKAAKAI--------GYEGAGTFEFLVDKNLDFYFIEMNTRLQVE--HCVSEMVSGIDIIEQMIKVAEG 322 (446)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEECTTCCEEEEEEESSCCTT--HHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCCceEEEEEEeCCCCEEEEEeECCCCCc--ceeeeeeeCCCHHHHHHHHHCC
Confidence 567778887777765552 222467799999999999999999998754 2232221 12344445555543
No 40
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=95.02 E-value=0.052 Score=47.48 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
..+..+|.+++.++..++ ++....++||++|.++++|+||||+.|+-+
T Consensus 321 ~~~~~~l~~~a~~~~~al--------G~~G~~~VEf~~d~dg~~~~lEiNpR~~~~ 368 (540)
T 3glk_A 321 LAIFEFMEQCAIRLAKTV--------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 368 (540)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEETTSCEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHc--------CCccceEEEEEEcCCCCEEEEEEECCCCCc
Confidence 567788888777776553 334567799999999999999999999754
No 41
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=94.88 E-value=0.058 Score=46.84 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEe-CCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD-~~~kpwLLEVN~~P~l~ 78 (148)
..+.++|.+++.+++.+. ++-..+++||++| .++++|+||||..|+-.
T Consensus 327 ~~~~~~i~~~a~~~~~al--------g~~G~~~ve~~~~~~dg~~~~iEiN~R~~g~ 375 (554)
T 1w96_A 327 AETFHEMEKAAVRLGKLV--------GYVSAGTVEYLYSHDDGKFYFLELNPRLQVE 375 (554)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEECTTTCCEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHc--------CCcceEEEEEEEECCCCCEEEEEeeCCCCcc
Confidence 567788888777776543 2224578999998 78999999999988754
No 42
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=94.84 E-value=0.053 Score=44.80 Aligned_cols=30 Identities=13% Similarity=-0.027 Sum_probs=25.6
Q ss_pred CcceeeeeeEEEeCCCCcEEEeeccCCCCCc
Q psy9332 49 HCFECYGYDIIIDNQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 49 ~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~ 79 (148)
++...+++||++++++ +|++|||..|+...
T Consensus 263 ~~~G~~~vd~~~~~~g-~~viEiN~R~g~~~ 292 (422)
T 2xcl_A 263 SFTGVLYAGLMLTENG-SKVIEFNARFGDPE 292 (422)
T ss_dssp CCEEEEEEEEEEETTE-EEEEEEESSCCTTT
T ss_pred CcEEEEEeeEEEeCCC-cEEEEEecCCCCcH
Confidence 4556788999999999 99999999998543
No 43
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=94.83 E-value=0.061 Score=44.44 Aligned_cols=52 Identities=8% Similarity=0.024 Sum_probs=34.4
Q ss_pred HHHHHHH-HHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNI-SWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i-~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..++ ++++.+++.+. ..+. -++...+++||++|+++ +|++|||..|+-.
T Consensus 233 ~~~~~~~~~~~~~~~~~~l-~~~g--~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~ 285 (417)
T 2ip4_A 233 EATLRRVEEEILGPLVRGL-RAEG--VVYRGVVYAGLMLTREG-PKVLEFNARFGDP 285 (417)
T ss_dssp HHHHHHHHHHTHHHHHHHH-HHTT--CCCCEEEEEEEEECSSC-EEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HHcC--CCceEEEEEEEEEeCCC-eEEEEEecCCCCc
Confidence 4566666 44444443332 2221 24456788999999999 9999999999854
No 44
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=94.78 E-value=0.055 Score=44.72 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=34.7
Q ss_pred HHHHHHHH-HHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNIS-WLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~-~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..++. +++.+++.+.. ... -++...+++||++|.++ +|++|||..|+-.
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~-~~g--~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~ 291 (424)
T 2yw2_A 239 EEVEKRIREEIVERVIKGLK-EEG--IYYRGFLYAGLMITKEG-PKVLEFNVRLGDP 291 (424)
T ss_dssp HHHHHHHHHHTHHHHHHHHH-HHT--CCCEEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HcC--CCceeEEEEEEEEeCCC-cEEEEEecCCCCc
Confidence 45666663 44444433321 111 24556788999999999 9999999999844
No 45
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=94.63 E-value=0.069 Score=47.36 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
..+..+|.+++.++..++ ++....++||++|.++++|+||||+.|+-+
T Consensus 337 ~~~~~~i~~~A~~~a~al--------Gy~G~~~VEfl~d~dG~~yflEINpRl~~e 384 (587)
T 3jrx_A 337 LAIFEFMEQCAIRLAKTV--------GYVSAGTVEYLYSQDGSFHFLELNPRLQVE 384 (587)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEECSSSCEEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHHc--------CCcceeEEEEEEeCCCCEEEEEEeCCCCCc
Confidence 567888888887776554 334567799999999999999999999743
No 46
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=94.53 E-value=0.068 Score=44.81 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=34.2
Q ss_pred HHHHHHH-HHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNI-SWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i-~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..++ ++++.+++.+. ..+. -++...+++||++++++ ||++|||..|+-.
T Consensus 260 ~~~~~~~~~~~~~~~~~~l-~~~g--~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~ 312 (451)
T 2yrx_A 260 DEMMDAALEAILRPAAKAL-AAEG--RPFLGVLYAGLMATANG-PKVIEFNARFGDP 312 (451)
T ss_dssp HHHHHHHHHHTHHHHHHHH-HHTT--CCCEEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHH-HHcC--CCceeEEEEEEEEeCCC-cEEEEEecCCCCc
Confidence 4556666 44444443332 1111 24556788999999999 9999999999854
No 47
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=94.51 E-value=0.027 Score=47.63 Aligned_cols=53 Identities=23% Similarity=0.162 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHH-HHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 22 TNKLFTNISWLIVH-SLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 22 ~~~i~~~i~~ii~~-t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
.+.+..++.+.+++ ++.+. ..+. -.....+.+||++++++ |++||+|..|+-.
T Consensus 259 ~~~~~~~i~~~i~~~a~~~~-~a~g--~~~~G~~~ve~~~~~~g-~~viEiN~R~g~~ 312 (442)
T 3lp8_A 259 TQEMEHIIIQKIIYPTIKAM-FNMN--IQFRGLLFAGIIIKKNE-PKLLEYNVRFGDP 312 (442)
T ss_dssp CHHHHHHHHHHTHHHHHHHH-HHTT--CCCEEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHcC--CCceeEEEEEEEEeCCC-eEEEEEecCCCCC
Confidence 35677777765333 32221 1111 22356788999999999 9999999999843
No 48
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=94.51 E-value=0.07 Score=43.64 Aligned_cols=48 Identities=10% Similarity=0.193 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+.++|.+++.+++.+. .- ....+++||++| ++.+|++|||..|+-+
T Consensus 236 ~~~~~~l~~~a~~~~~~l----g~---~gg~~~ve~~~~-~~~~~~iEiN~R~~~~ 283 (403)
T 4dim_A 236 DDIIEKTKTEVKKAIKAL----GL---NNCAVNVDMILK-DNEVYIIELTGRVGAN 283 (403)
T ss_dssp HHHHHHHHHHHHHHHHHH----TC---CSEEEEEEEEEE-TTEEEEEEEESSCCST
T ss_pred HHHHHHHHHHHHHHHHHc----CC---CCCcEEEEEEEE-CCcEEEEEEcCCCCCC
Confidence 567777877777765553 21 122578999998 6899999999998854
No 49
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=94.38 E-value=0.081 Score=44.11 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+.+++.+++.+++.+. . +-..+++||++|. +.+|++|||..|+-.
T Consensus 250 ~~~~~~i~~~a~~~~~~l----g----~~G~~~ve~~~~~-~~~~viEiN~R~~~~ 296 (449)
T 2w70_A 250 PELRRYIGERCAKACVDI----G----YRGAGTFEFLFEN-GEFYFIEMNTRIQVE 296 (449)
T ss_dssp HHHHHHHHHHHHHHHHHH----T----CCEEEEEEEEEET-TEEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHc----C----CCceEEEEEEEEC-CCEEEEEEECCCCcc
Confidence 567778888777776552 2 2246889999998 899999999998643
No 50
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=94.25 E-value=0.082 Score=44.27 Aligned_cols=52 Identities=13% Similarity=0.133 Sum_probs=34.6
Q ss_pred HHHHHHHH-HHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNIS-WLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~-~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..++. +++.+++.+... . .-++...+++||++|.++ +|++|||..|+-.
T Consensus 266 ~~~~~~~~~~~a~~~~~~l~~-~--g~~~~G~~~ve~~~~~~g-~~viEiN~R~~~~ 318 (452)
T 2qk4_A 266 NDLLLKIKDTVLQRTVDGMQQ-E--GTPYTGILYAGIMLTKNG-PKVLEFNCRFGDP 318 (452)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH-T--TCCCCEEEEEEEEEETTE-EEEEEEESSCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-c--CCCceeEEEEEEEEeCCC-cEEEEEeccCCCc
Confidence 45666665 444444433311 1 123446788999999999 9999999999843
No 51
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=94.15 E-value=0.092 Score=43.44 Aligned_cols=49 Identities=2% Similarity=-0.016 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCT 80 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~ 80 (148)
+.+..++++++.+++.+. ++..++++||++++ +.+|++|||..|+-+..
T Consensus 200 ~~~~~~~~~~a~~i~~aL--------g~~G~~~vEf~~~~-~~~~v~EinpR~~~sg~ 248 (355)
T 3eth_A 200 AQQQARAEEMLSAIMQEL--------GYVGVMAMECFVTP-QGLLINELAPRVHNSGH 248 (355)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCEEEEEEEEEET-TEEEEEEEESSCCGGGT
T ss_pred HHHHHHHHHHHHHHHHHC--------CCeeEEEEEEEEEC-CcEEEEEeeCCCCCCcc
Confidence 567778888777776553 45678999999997 48999999999987543
No 52
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=93.64 E-value=0.14 Score=42.83 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+.++|.+++.+++.+. . +-...++||++|. +.+|+||||..|+..
T Consensus 254 ~~~~~~i~~~a~~~~~~l----g----~~g~~~ve~~~~~-~~~~viEiN~R~~~~ 300 (461)
T 2dzd_A 254 DELRQRICEAAVQLMRSV----G----YVNAGTVEFLVSG-DEFYFIEVNPRIQVE 300 (461)
T ss_dssp HHHHHHHHHHHHHHHHHT----T----CCEEEEEEEEEET-TEEEEEEEESSCCGG
T ss_pred HHHHHHHHHHHHHHHHHc----C----CCcceEEEEEEeC-CCEEEEEEECCCCCc
Confidence 567777887777776553 1 2224579999999 899999999998743
No 53
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=93.34 E-value=0.051 Score=49.64 Aligned_cols=51 Identities=25% Similarity=0.306 Sum_probs=40.0
Q ss_pred chhHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC--------CCCcEEEeeccCCCCCc
Q psy9332 20 DITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN--------QLKPWLIEVNASPSLTC 79 (148)
Q Consensus 20 d~~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~--------~~kpwLLEVN~~P~l~~ 79 (148)
|+++.+-+..+++++++..+. .+.+-|+|+++++ .+...+||||.+|++..
T Consensus 674 dvtd~i~p~~~~~a~~aa~~l---------Gl~~~GvDli~~di~~p~~~~~~~~~iiEvN~~P~~~~ 732 (757)
T 3ln7_A 674 DMTDEMHESYKQLAVGITKAM---------GAAVCGVDLIIPDLKQPATPNLTSWGVIEANFNPMMMM 732 (757)
T ss_dssp ECTTTSCHHHHHHHHHHHHHH---------TCSEEEEEEEESCSSSCCCSSTTTCEEEEEESSCCHHH
T ss_pred eccccCCHHHHHHHHHHHHHh---------CCCEEEEEEEecCccccccccCCCeEEEEEcCCcchhh
Confidence 456678899998888876554 4567899999984 35678999999999764
No 54
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=93.22 E-value=0.058 Score=49.17 Aligned_cols=51 Identities=25% Similarity=0.280 Sum_probs=39.2
Q ss_pred chhHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeC--------CCCcEEEeeccCCCCCc
Q psy9332 20 DITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDN--------QLKPWLIEVNASPSLTC 79 (148)
Q Consensus 20 d~~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~--------~~kpwLLEVN~~P~l~~ 79 (148)
|.++.+-+.++++++++..++ .+.+-|+|+++++ .+...+||||.+|++..
T Consensus 668 d~td~i~p~~~~~a~~aa~~i---------gl~~~GvDli~~di~~~~~~~~~~~~iiEvN~~pg~~~ 726 (750)
T 3ln6_A 668 DVTNTMDPTYKQLAAEMAEAM---------GAWVCGVDLIIPNATQAYSKDKKNATCIELNFNPLMYM 726 (750)
T ss_dssp ECTTTSCHHHHHHHHHHHHHH---------TCSSCEEEEEESCSSSCCCTTTTCCEEEEEESSCCCHH
T ss_pred eccccCCHHHHHHHHHHHHHh---------CCCeEEEEEEecCccccccccCCCeEEEEEcCCcchhh
Confidence 345568888888888876554 2447899999996 45668999999999964
No 55
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=93.21 E-value=0.12 Score=44.16 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeee-eeEEEeCCCCcEEEeeccCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYG-YDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G-~D~~iD~~~kpwLLEVN~~P~ 76 (148)
+.+..+|.+++.+++.+. ++-...+ +||++|.++++++||||..|+
T Consensus 286 ~~~~~~l~~~a~~~~~al--------G~~g~~~~vef~~~~dg~~~~iEvNpR~~ 332 (474)
T 3vmm_A 286 EEAKKKIVEAAKKANEGL--------GLQNCATHTEIKLMKNREPGLIESAARFA 332 (474)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEEEEGGGEEEEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCCccEEEEEEEcCCCCEEEEEEeCCCC
Confidence 457778888777776654 2223343 899999999999999998776
No 56
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=93.08 E-value=0.11 Score=41.22 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=21.7
Q ss_pred CcceeeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 49 HCFECYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 49 ~~FEl~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
++...+++||+ +.++.++++|||..|+
T Consensus 247 g~~G~~~vd~~-~~~g~~~~iEiN~R~~ 273 (331)
T 2pn1_A 247 GLVGPLDFDLF-DVAGTLYLSEINPRFG 273 (331)
T ss_dssp CCCEEEEEEEE-EETTEEEEEEEESSCC
T ss_pred CCcceEEEEEE-EcCCCEEEEEEeCCCC
Confidence 44567899998 5678999999999754
No 57
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=92.22 E-value=0.11 Score=46.55 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHH-HHHHHHHHHhhcc
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL-KYKLIDNILNIVM 100 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~l-k~~ll~d~l~lv~ 100 (148)
.+.+..+|.+++.+.+.++ ++...+++||++|.++++|+||||+.|+-. +++...+ --.+++-.++++.
T Consensus 274 ~~~~~~~l~~~a~~~~~al--------g~~G~~~vEf~~~~dG~~~~iEiNpR~~~~--~~~te~~tGvdl~~~~l~~a~ 343 (675)
T 3u9t_A 274 GAELRRAMGEAAVRAAQAI--------GYVGAGTVEFLLDERGQFFFMEMNTRLQVE--HPVTEAITGLDLVAWQIRVAR 343 (675)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCCSEEEEECCBCTTSCBCBCEEESSCCTT--HHHHHHTTTCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHc--------CCccceEEEEEEcCCCCEEEEeccccccCC--chhhhhhcCCCHHHHHHHHHC
Confidence 3567788888888776553 233567899999999999999999999753 2332221 1234445555555
Q ss_pred c
Q psy9332 101 W 101 (148)
Q Consensus 101 ~ 101 (148)
.
T Consensus 344 G 344 (675)
T 3u9t_A 344 G 344 (675)
T ss_dssp T
T ss_pred C
Confidence 3
No 58
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=92.08 E-value=0.17 Score=45.46 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcchHHHH-HHHHHHHHhhcc
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILK-YKLIDNILNIVM 100 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~~~~lk-~~ll~d~l~lv~ 100 (148)
.+.+..+|.+++.+++.+. ++-..+.+||++|.++++++||||+.|+-+ +++...+. -.+++-.++++.
T Consensus 248 ~~~~~~~l~~~a~~~~~al--------g~~G~~~vEf~~d~dg~~~~lEiNpR~~~~--~~~te~~tGvdl~~~~l~~a~ 317 (681)
T 3n6r_A 248 DEATRRAMGEQAVALAKAV--------GYASAGTVEFIVDGQKNFYFLEMNTRLQVE--HPVTELITGVDLVEQMIRVAA 317 (681)
T ss_dssp CHHHHHHHHHHHHHHHHTT--------TCCSEEEEEEEECTTSCCCCCEEECSCCTT--HHHHHHHHTCCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHc--------CCCceEEEEEEEeCCCCEEEEecccccCCC--cHHhHHHhCCCHHHHHHHHHC
Confidence 3567778888777765443 222456699999999999999999998754 34433221 245566666665
Q ss_pred cc
Q psy9332 101 WN 102 (148)
Q Consensus 101 ~~ 102 (148)
..
T Consensus 318 G~ 319 (681)
T 3n6r_A 318 GE 319 (681)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 59
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=91.49 E-value=0.34 Score=46.19 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEe-CCCCcEEEeeccCCCCCc
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIID-NQLKPWLIEVNASPSLTC 79 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD-~~~kpwLLEVN~~P~l~~ 79 (148)
+.+..+|.+++.+++.+. ++-..+++||++| .++++++||||..|+.+.
T Consensus 268 ~~~~~~i~~~a~~i~~al--------g~~G~~~vEf~vd~~dg~~~~iEiNpR~~~~~ 317 (1165)
T 2qf7_A 268 EAQRQELAAYSLKIAGAT--------NYIGAGTVEYLMDADTGKFYFIEVNPRIQVEH 317 (1165)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEEETTTTEEEEEEEECSCCTTH
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCcceeEEEEEECCCCCEEEEEEEcCCCCCc
Confidence 467777887777776543 2234567999999 889999999999988543
No 60
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=91.43 E-value=0.37 Score=45.24 Aligned_cols=46 Identities=11% Similarity=0.106 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 77 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l 77 (148)
+.+..+|++++.++..+. ++-.++++||+++ ++.+|+||||..|+-
T Consensus 803 ~~~~~~i~~~a~~i~~aL--------g~~G~~~vdf~v~-~~~~~viEvNpR~~~ 848 (1073)
T 1a9x_A 803 QEIQDVMRQQVQKLAFEL--------QVRGLMNVQFAVK-NNEVYLIEVNPRAAR 848 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEEC-SSCEEEEEEECSCCT
T ss_pred HHHHHHHHHHHHHHHHHc--------CCcceEEEEEEEE-CCeEEEEEEECCCcc
Confidence 456777777777665543 3447899999997 789999999999974
No 61
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=90.59 E-value=0.42 Score=38.48 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccC-CCC
Q psy9332 27 TNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNAS-PSL 77 (148)
Q Consensus 27 ~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~-P~l 77 (148)
+.+++++.+++.+. ++-..+++||++|+++ ++++|||+. |+.
T Consensus 205 ~~~~~~a~~~~~~l--------~~~G~~~vef~~~~~~-~~viEiN~R~~g~ 247 (363)
T 4ffl_A 205 PLFRQISHDLAANL--------PLKGIMDVEAIFGPKG-LRVIEIDARFPSQ 247 (363)
T ss_dssp HHHHHHHHHHHHTT--------TCEEEEEEEEEEETTE-EEEEEEECSCCSS
T ss_pred HHHHHHHHHHHHhC--------CccceeeeeeEEeCCe-EEEEEEeCCCCCC
Confidence 44555555544331 3445788999999865 999999997 553
No 62
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=89.41 E-value=0.74 Score=43.24 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcc-eeeeeeEEEeC-CCCcEEEeeccCCC
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCF-ECYGYDIIIDN-QLKPWLIEVNASPS 76 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~F-El~G~D~~iD~-~~kpwLLEVN~~P~ 76 (148)
.+....+|.+++.+++.+. ++- ...++||++|. ++++++||||..++
T Consensus 257 ~~~~~~~l~~~a~~i~~~l--------g~~~G~~~vdf~~~~~~g~~~viEiNpR~~ 305 (1073)
T 1a9x_A 257 TDKEYQIMRNASMAVLREI--------GVETGGSNVQFAVNPKNGRLIVIEMNPRVS 305 (1073)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------TCCSEEEEEEEEECTTTCCEEEEEEESSCC
T ss_pred CHHHHHHHHHHHHHHHHHc--------CcccCceEEEEEEECCCCCEEEEEecCCCC
Confidence 3567778888887776654 232 56889999997 79999999996655
No 63
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=87.39 E-value=1.1 Score=37.18 Aligned_cols=53 Identities=8% Similarity=0.059 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSL 77 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l 77 (148)
+.+.+++.+++.+.+.+....+. ++....|+++|+++.++.++++|||..|+=
T Consensus 265 ~~~~~~a~~~a~~v~~al~~~~~--~~~~G~~~vE~fvt~dg~i~V~EIapR~gG 317 (361)
T 2r7k_A 265 ESLLPQVFEMGDKLVAKAKELVP--PGMIGPFCLQSLCNENLELVVFEMSARVDG 317 (361)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHST--TCCCEEEEEEEEECTTSCEEEEEEESSBCG
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc--CCccceEEEEEEEcCCCCEEEEEEcCCCCC
Confidence 45667888887777666533222 256788999999999999999999987763
No 64
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=86.95 E-value=1.1 Score=42.57 Aligned_cols=47 Identities=13% Similarity=0.230 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLT 78 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~ 78 (148)
+.+..+|.+++.+.+.+. ++-....+||++|++ ++|+||||..|+-+
T Consensus 252 ~~~~~~l~~~a~~~~~al--------G~~G~~~vEflvd~d-~~y~iEINpR~~g~ 298 (1150)
T 3hbl_A 252 PTLRQRICDAAIQLMENI--------KYVNAGTVEFLVSGD-EFFFIEVNPRVQVE 298 (1150)
T ss_dssp HHHHHHHHHHHHHHHHHT--------TCCEEEEEEEEEETT-EEEEEEEECSCCTT
T ss_pred HHHHHHHHHHHHHHHHHc--------CCCceEEEEEEEECC-eEEEEEEeCCCCCC
Confidence 567777887777776554 233456789999999 99999999999744
No 65
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=86.81 E-value=0.55 Score=36.28 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccC--CCCC
Q psy9332 26 FTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNAS--PSLT 78 (148)
Q Consensus 26 ~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~--P~l~ 78 (148)
-+++++++.++..+.. .+ ++ ...|+||+ | +|+||||+. |++.
T Consensus 248 ~~~~~~~a~~~~~~l~-~~----g~-~~~~vD~~----g-~~~iEvN~r~~~~~~ 291 (316)
T 1gsa_A 248 TESDWKIARQIGPTLK-EK----GL-IFVGLDII----G-DRLTEINVTSPTCIR 291 (316)
T ss_dssp CHHHHHHHHHHHHHHH-HT----TC-CEEEEEEE----T-TEEEEEECSSCCCHH
T ss_pred CHHHHHHHHHHHHHHH-hC----CC-cEEEEEec----C-CEEEEEcCCCCcchH
Confidence 3455555555443321 11 22 45789998 4 599999994 5654
No 66
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=86.09 E-value=1.4 Score=42.37 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCC-CCcEEEeeccCCCCCcCCcchHHH-HHHHHHHHHhhc
Q psy9332 22 TNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQ-LKPWLIEVNASPSLTCTTVNDRIL-KYKLIDNILNIV 99 (148)
Q Consensus 22 ~~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~-~kpwLLEVN~~P~l~~~~~~~~~l-k~~ll~d~l~lv 99 (148)
.+.+..+|.+++.+++.+. ++-..+++||++|.+ +.+++||||..++-. +++.+.+ --.+++-.++++
T Consensus 276 ~~~~~~~l~~~a~~~~~al--------g~~G~~~VEfivd~d~g~~y~iEINpRl~g~--~~~te~vtGvDlv~~~l~~a 345 (1236)
T 3va7_A 276 PEATRAKMRAASERLGSLL--------KYKCAGTVEFIYDEQRDEFYFLEVNARLQVE--HPITEMVTGLDLVEWMLRIA 345 (1236)
T ss_dssp CHHHHHHHHHHHHHHHHHT--------TCEEEEEEEEEEETTTTEEEEEEEECSCCTT--HHHHHHHHCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHc--------CCcceEEEEEEEECCCCcEEEEEEECCCCCc--cHHHHHHHCCCHHHHHHHHH
Confidence 3567778888877775552 233567899999985 999999999988643 2333332 234455555555
Q ss_pred cc
Q psy9332 100 MW 101 (148)
Q Consensus 100 ~~ 101 (148)
..
T Consensus 346 ~G 347 (1236)
T 3va7_A 346 AN 347 (1236)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 67
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=80.74 E-value=5.7 Score=32.94 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCCCCcCCcc
Q psy9332 24 KLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVN 83 (148)
Q Consensus 24 ~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~l~~~~~~ 83 (148)
++-+..+++++++..+.. -.+.|+|++-+. ++++++|||.-|-...+..+
T Consensus 249 ~Lt~eek~iA~kaa~a~G---------~~v~GVDlLrs~-~~~~V~EVNg~~fvk~~~~y 298 (330)
T 3t7a_A 249 ILNAREKLIAWKVCLAFK---------QTVCGFDLLRAN-GQSYVCDVNGFSFVKNSMKY 298 (330)
T ss_dssp CCCHHHHHHHHHHHHHTT---------BSEEEEEEEEET-TEEEEEEEEESCCCSSCHHH
T ss_pred cCCHHHHHHHHHHHHHhC---------CceEEEEEEEEC-CccEEEEeCCCccccCchhH
Confidence 466777888887765532 346899999885 57999999999998877544
No 68
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=69.27 E-value=7.7 Score=31.48 Aligned_cols=50 Identities=4% Similarity=-0.022 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHchhhhcCCCCcceeeeeeEEEeCCCCcEEEeeccCCC
Q psy9332 23 NKLFTNISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPS 76 (148)
Q Consensus 23 ~~i~~~i~~ii~~t~~a~~~~l~~~~~~FEl~G~D~~iD~~~kpwLLEVN~~P~ 76 (148)
+.+.+++.+++.+.+.+...... ++....|+++ ++.+++++++|||..|.
T Consensus 221 ~~~~~~a~~~a~~i~~~L~~l~~--~g~~G~~~vE--~~~dg~~~v~EIapR~~ 270 (320)
T 2pbz_A 221 ESLLPQLYDYGLAFVRTMRELEP--PGVIGPFALH--FAYDGSFKAIGIASRID 270 (320)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHST--TCCCSEEEEE--EECSSSCEEEEEESSBC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc--CCceeeEEEE--EcCCCcEEEEEecCCCC
Confidence 34567777777766555432211 1556678888 68889999999998844
No 69
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=44.30 E-value=12 Score=33.30 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=19.4
Q ss_pred eeee-eeEEEeCCCCcEEEeeccC
Q psy9332 52 ECYG-YDIIIDNQLKPWLIEVNAS 74 (148)
Q Consensus 52 El~G-~D~~iD~~~kpwLLEVN~~ 74 (148)
-++| +||.+|.++ +-|+|.|.-
T Consensus 312 ~l~gRfDf~~dg~g-~KllE~NaD 334 (619)
T 2io8_A 312 MITGRMDFCMDERG-LKVYEYNAD 334 (619)
T ss_dssp CCEEEEEEEEETTE-EEEEEEECS
T ss_pred CeEEEEEEEEeCCe-eEEEEEeCC
Confidence 4677 999999998 999999984
No 70
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=42.37 E-value=16 Score=32.78 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.9
Q ss_pred eeee-eeEEEeCC-CCcEEEeeccC
Q psy9332 52 ECYG-YDIIIDNQ-LKPWLIEVNAS 74 (148)
Q Consensus 52 El~G-~D~~iD~~-~kpwLLEVN~~ 74 (148)
.++| |||.+|.+ +.+-|+|.|.-
T Consensus 324 ~lygRfDf~~dg~~g~~KllE~NAD 348 (652)
T 2vob_A 324 YISGRFDFAFNNETGEVKCFEYNAD 348 (652)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETT
T ss_pred ceEEEEEEEEcCCCCceEEEEEcCC
Confidence 3677 99999988 78999999983
No 71
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=39.05 E-value=1.6 Score=32.24 Aligned_cols=19 Identities=47% Similarity=0.994 Sum_probs=11.0
Q ss_pred CCCcEEEeeccCCCCCcCC
Q psy9332 63 QLKPWLIEVNASPSLTCTT 81 (148)
Q Consensus 63 ~~kpwLLEVN~~P~l~~~~ 81 (148)
+++|||-||+.+|+-...+
T Consensus 105 dl~pwl~ei~~~p~~~~~~ 123 (144)
T 4e9m_A 105 DLRPWLLEIGFSPSLLTQS 123 (144)
T ss_dssp GGHHHHHHTTCC-------
T ss_pred chhHHHHHhCCCcHHHhcc
Confidence 4799999999999865543
No 72
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=37.22 E-value=23 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.6
Q ss_pred cceeeeeeEEEeCCCCcEEEeeccC-CC
Q psy9332 50 CFECYGYDIIIDNQLKPWLIEVNAS-PS 76 (148)
Q Consensus 50 ~FEl~G~D~~iD~~~kpwLLEVN~~-P~ 76 (148)
...+.|+|++-|.+|+-|++|-|+. ||
T Consensus 141 ~~~i~~~Dl~r~~dG~~~vlEdn~~~PS 168 (474)
T 3n6x_A 141 YAHIAGVDLVRTGENDFYVLEDNLRTPS 168 (474)
T ss_dssp SCSEEEEEEEECSSSCEEEEEEECSSCC
T ss_pred EEEEEEEEEEECCCCCEEEEEeCCCCCc
Confidence 4557899999999999999999994 65
No 73
>3kal_A Homoglutathione synthetase; dimer, ATP-grAsp domain; HET: ADP HGS; 1.90A {Glycine max} PDB: 3kak_A* 3kaj_A*
Probab=33.69 E-value=81 Score=27.42 Aligned_cols=27 Identities=30% Similarity=0.332 Sum_probs=20.7
Q ss_pred CCcceeeeeeEEEeCCCCcEE-EeeccC
Q psy9332 48 KHCFECYGYDIIIDNQLKPWL-IEVNAS 74 (148)
Q Consensus 48 ~~~FEl~G~D~~iD~~~kpwL-LEVN~~ 74 (148)
+-...++.-|+|+|.....+. +|+|+-
T Consensus 146 ~l~Lgl~RSDYMld~~~~~lkQVEfNTI 173 (499)
T 3kal_A 146 DIRMGIVRSDYMIDEKTKSLLQIEMNTI 173 (499)
T ss_dssp CEEEEEEEEEEEEETTTTEEEEEEEECS
T ss_pred ceeeeeeehhhhcCCCCCceEEEEeech
Confidence 345667777999998766665 999984
No 74
>3dnx_A Uncharacterized protein SPO1766; structural genomics, APC88088, protein of unknown function, protein structure initiative; HET: MSE; 1.94A {Silicibacter pomeroyi}
Probab=22.53 E-value=55 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=17.4
Q ss_pred EeCCCCcEEEeeccC-CCCCcCCc
Q psy9332 60 IDNQLKPWLIEVNAS-PSLTCTTV 82 (148)
Q Consensus 60 iD~~~kpwLLEVN~~-P~l~~~~~ 82 (148)
+..+|.+|++||.++ .+|..+.+
T Consensus 48 l~~kg~i~ivEiKsS~aDFr~D~K 71 (153)
T 3dnx_A 48 LGPKGEIWVIECKSSRADFQADAK 71 (153)
T ss_dssp ECTTCCEEEEEECSSHHHHHHTTT
T ss_pred ECCCCcEEEEEEEccHHHhhcccc
Confidence 788999999999996 44444443
Done!