RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9332
         (148 letters)



>d1i7na2 d.142.1.3 (A:215-420) Synapsin II {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 206

 Score = 32.0 bits (71), Expect = 0.016
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 50  CFECYGYDIIIDNQLKPWLIEVNASPSLTC--TTVNDRILKYKLIDNILNIVM 100
             +      +     K ++ EV            V DR L   L+ + +N ++
Sbjct: 153 GLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITDLVISKMNQLL 205


>d1uc8a2 d.142.1.7 (A:89-280) Lysine biosynthesis enzyme LysX
           ATP-binding domain {Thermus thermophilus [TaxId: 274]}
          Length = 192

 Score = 31.1 bits (69), Expect = 0.028
 Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 4/59 (6%)

Query: 42  YIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVM 100
            + A +         D+    +    + EVN +     +          +   IL    
Sbjct: 134 SVKAAEAVGGGVVAVDLFESER-GLLVNEVNHTMEFKNS---VHTTGVDIPGEILKYAW 188


>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
           C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
          Length = 228

 Score = 29.2 bits (64), Expect = 0.13
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 49  HCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKY------KLIDNILNIVM 100
           +       D ++D    P+L E N  P  T  ++  R+  Y      KL+D +++   
Sbjct: 161 NLRGEARMDFLLDENNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLIDYGF 218


>d1e4ea2 d.142.1.1 (A:132-342) D-alanine:D-lactate ligase VanA,
           C-domain {Enterococcus faecium [TaxId: 1352]}
          Length = 211

 Score = 28.6 bits (62), Expect = 0.27
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 7/91 (7%)

Query: 15  YPRGKDITNKLFTNISWLIVHSLKSVSYIMANDKHCFECYGY-DIIIDNQLKPWLIEVNA 73
             +G +                    +                D+ + +  +  L EVN 
Sbjct: 118 PEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDNGRIVLNEVNT 177

Query: 74  SPSLTCTTVNDRILKY------KLIDNILNI 98
            P  T  +   R++        +LID ++ +
Sbjct: 178 LPGFTSYSRYPRMMAAAGISLPELIDRLIVL 208


>d1iowa2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain
           {Escherichia coli, gene ddlB [TaxId: 562]}
          Length = 210

 Score = 28.2 bits (61), Expect = 0.37
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 57  DIIIDNQLKPWLIEVNASPSLTCTTVNDRILKY------KLIDNILNI 98
           D+++D+  + +L+E N SP +T  ++     +       +L+  IL +
Sbjct: 161 DVMLDSDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILEL 208


>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
           (GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
          Length = 220

 Score = 26.9 bits (58), Expect = 0.89
 Identities = 8/65 (12%), Positives = 25/65 (38%)

Query: 44  MANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRILKYKLIDNILNIVMWNK 103
           +  + + +  + Y  ++ +   P+++E N       T V   +     ++ +L      K
Sbjct: 154 VEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGGK 213

Query: 104 YKKAD 108
            +  +
Sbjct: 214 MEPVE 218


>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
           303]}
          Length = 155

 Score = 24.4 bits (52), Expect = 6.0
 Identities = 10/87 (11%), Positives = 25/87 (28%), Gaps = 5/87 (5%)

Query: 28  NISWLIVHSLKSVSYIMANDKHCFECYGYDIIIDNQLKPWLIEVNASPSLTCTTVNDRIL 87
           NI   I  S  +++Y        F      ++ ++ +      ++       T   D I+
Sbjct: 38  NIDAAIFTSYHNINYYSDFLYCSFGRPYALVVTEDDVISISANIDGGQPWRRTVGTDNIV 97

Query: 88  -----KYKLIDNILNIVMWNKYKKADG 109
                +      I   +   +    + 
Sbjct: 98  YTDWQRDNYFAAIQQALPKARRIGIEH 124


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.416 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 572,422
Number of extensions: 24911
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 12
Length of query: 148
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,350,386
Effective search space: 95877406
Effective search space used: 95877406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)