BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9333
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 67/272 (24%), Positives = 114/272 (41%), Gaps = 35/272 (12%)
Query: 21 LGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELE--------------REGNPLAE 66
LG+ Q++N++ +L RK LVK IK + E E P
Sbjct: 55 LGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTETCTWFPESYVIYPTNEKTPAMR 114
Query: 67 KSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLS 126
N +P L P T + F ++ + WI K ++G GI + + +
Sbjct: 115 ARNGLP----DLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDAT 170
Query: 127 KLKKWSRESKTPFNPILVKESYVISKYIDNPLLI--GGKKFDLRLYVLVTSFRPLKCYLF 184
+L + + +VI KY+++PLL+ G +KFD+R +VLV + YL+
Sbjct: 171 ELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN--QYNIYLY 219
Query: 185 KLGFCRFCTVKYDKNITELDNMYVHLTNVSVQK-HGADYNNI-HGGKMNLQNLRLYLEST 242
+ G R + Y T +M HLTN +QK H +Y G +M + YL ++
Sbjct: 220 REGVLRTSSEPYSD--TNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEFNQYLVTS 277
Query: 243 RGKDITNKLFTNISWLIVHSLKSVSYIMAKKW 274
++ N + I +I L + ++ K+
Sbjct: 278 LNINLENSILCQIKEIIRVCLSCLEPAISTKY 309
>pdb|4I4T|F Chain F, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|F Chain F, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 384
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 43/275 (15%)
Query: 21 LGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDF 80
LG+ Q++N++ +L RK LVK IK L+E P Y+
Sbjct: 52 LGHEPGLVQLVNYYRGADKLCRKASLVKLIKT--------SPELSESCTWFPESYVIYPT 103
Query: 81 IPITFILPA--------------DYNMFVEEYRK----NPASTWIMKPCGKSQGNGIFLI 122
T + PA + +F+ Y + + WI K ++G GI +
Sbjct: 104 NLKTPVAPAQNGIRHLINNTRTDEREVFLAAYNRRREGREGNVWIAKSSAGAKGEGILIS 163
Query: 123 NKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLI--GGKKFDLRLYVLVTSFRPLK 180
++ S+L + E + +VI KY++ PLL+ G +KFD+R +VLV +
Sbjct: 164 SEASELLDFIDEQ---------GQVHVIQKYLEKPLLLEPGHRKFDIRSWVLVDHLYNI- 213
Query: 181 CYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQK-HGADYNNI-HGGKMNLQNLRLY 238
YL++ G R + Y N + HLTN +QK + +Y G +M + Y
Sbjct: 214 -YLYREGVLRTSSEPY--NSANFQDKTCHLTNHCIQKEYSKNYGRYEEGNEMFFEEFNQY 270
Query: 239 LESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKK 273
L + N + I +I L + ++ K
Sbjct: 271 LMDALNTTLENSILLQIKHIIRSCLMCIEPAISTK 305
>pdb|1YQF|A Chain A, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|B Chain B, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|C Chain C, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|D Chain D, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|E Chain E, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|F Chain F, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
Length = 203
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 205 NMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDIT-------NKLFTNISW 257
N++V++T + Q AD + I G++ L N+R Y E+ KD N+L+T
Sbjct: 93 NIFVYITQKNGQTMQADLS-IEEGELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGP-- 149
Query: 258 LIVHSL 263
+VH L
Sbjct: 150 -LVHEL 154
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 110 PCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISK 152
P G G FL L + K+ + + P I+VKE +ISK
Sbjct: 16 PRGSHMGKEYFLKVALREAKRAFEKGEVPVGAIIVKEGEIISK 58
>pdb|3K1Q|A Chain A, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
Microscopy And Bioinformatics
pdb|3IYL|W Chain W, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
How Penetration Protein Is Primed For Cell Entry
Length = 1299
Score = 28.1 bits (61), Expect = 6.8, Method: Composition-based stats.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 81 IPITFILPADYNMFVEEYRKNP 102
+P+T ++ A YN F+ E +NP
Sbjct: 805 VPVTTLVAAGYNSFISEQTRNP 826
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,763,614
Number of Sequences: 62578
Number of extensions: 415168
Number of successful extensions: 858
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 10
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)