Query psy9333
Match_columns 308
No_of_seqs 165 out of 1147
Neff 7.0
Searched_HMMs 46136
Date Sat Aug 17 00:38:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03133 TTL: Tubulin-tyrosine 100.0 3.1E-56 6.8E-61 415.9 6.2 249 25-302 4-269 (292)
2 KOG2156|consensus 100.0 8.9E-55 1.9E-59 417.1 13.8 243 22-299 240-487 (662)
3 KOG2157|consensus 100.0 2.3E-47 5.1E-52 373.9 15.1 282 6-299 110-407 (497)
4 KOG2158|consensus 100.0 7.9E-41 1.7E-45 317.6 7.6 240 28-304 172-421 (565)
5 KOG2155|consensus 100.0 2.7E-31 5.9E-36 251.3 6.7 242 19-302 345-607 (631)
6 PF14398 ATPgrasp_YheCD: YheC/ 99.2 5.5E-11 1.2E-15 109.9 10.7 199 39-296 15-236 (262)
7 PF08443 RimK: RimK-like ATP-g 97.8 4.2E-05 9E-10 67.2 5.9 80 81-174 18-99 (190)
8 PF02955 GSH-S_ATP: Prokaryoti 97.7 0.00011 2.3E-09 64.1 7.6 81 78-173 9-92 (173)
9 COG0189 RimK Glutathione synth 97.3 0.00055 1.2E-08 65.2 7.4 93 81-192 134-229 (318)
10 PRK05246 glutathione synthetas 97.3 0.00053 1.2E-08 65.0 7.3 76 79-172 133-214 (316)
11 PF13535 ATP-grasp_4: ATP-gras 97.2 0.00083 1.8E-08 57.3 6.5 80 81-172 19-100 (184)
12 TIGR00768 rimK_fam alpha-L-glu 97.2 0.00079 1.7E-08 61.6 6.5 79 81-172 103-184 (277)
13 TIGR01380 glut_syn glutathione 97.0 0.0042 9.2E-08 58.8 9.4 77 79-173 132-214 (312)
14 TIGR02144 LysX_arch Lysine bio 96.9 0.0065 1.4E-07 55.9 10.0 80 81-172 102-183 (280)
15 PRK12458 glutathione synthetas 96.9 0.0022 4.7E-08 61.6 7.0 78 80-172 140-221 (338)
16 PRK10446 ribosomal protein S6 96.9 0.0026 5.7E-08 59.6 7.2 78 81-172 114-193 (300)
17 PLN02941 inositol-tetrakisphos 96.8 0.0035 7.6E-08 59.9 7.4 76 81-175 129-208 (328)
18 PF14403 CP_ATPgrasp_2: Circul 96.5 0.0082 1.8E-07 59.5 7.5 103 78-195 307-427 (445)
19 PRK12767 carbamoyl phosphate s 95.7 0.055 1.2E-06 50.9 8.7 43 103-155 148-190 (326)
20 TIGR03103 trio_acet_GNAT GNAT- 95.5 0.033 7.2E-07 56.9 6.8 73 81-172 312-387 (547)
21 PRK01372 ddl D-alanine--D-alan 95.3 0.037 8.1E-07 51.6 6.3 74 81-172 113-188 (304)
22 PRK06849 hypothetical protein; 94.7 0.1 2.2E-06 50.7 7.5 64 81-156 131-196 (389)
23 PRK14016 cyanophycin synthetas 94.6 0.068 1.5E-06 56.5 6.4 74 81-172 229-305 (727)
24 TIGR01161 purK phosphoribosyla 94.5 0.08 1.7E-06 50.7 6.2 62 82-155 114-178 (352)
25 COG0439 AccC Biotin carboxylas 94.3 0.027 5.9E-07 56.0 2.4 56 103-158 152-207 (449)
26 TIGR02291 rimK_rel_E_lig alpha 94.2 0.08 1.7E-06 50.4 5.3 45 81-127 52-99 (317)
27 PRK07206 hypothetical protein; 94.1 0.11 2.3E-06 50.8 6.1 75 81-156 123-200 (416)
28 PRK08654 pyruvate carboxylase 94.0 0.053 1.1E-06 54.8 3.9 65 89-157 142-206 (499)
29 PRK08462 biotin carboxylase; V 93.7 0.075 1.6E-06 52.6 4.4 55 103-157 154-208 (445)
30 PRK08463 acetyl-CoA carboxylas 93.7 0.12 2.5E-06 51.9 5.6 55 103-157 152-206 (478)
31 PRK02186 argininosuccinate lya 93.3 0.18 3.9E-06 54.5 6.7 66 81-155 122-189 (887)
32 TIGR01142 purT phosphoribosylg 93.2 0.17 3.7E-06 48.7 5.8 68 82-155 117-186 (380)
33 PF02655 ATP-grasp_3: ATP-gras 93.2 0.033 7.2E-07 47.5 0.8 41 103-155 31-71 (161)
34 TIGR02068 cya_phycin_syn cyano 93.1 0.21 4.5E-06 53.9 6.8 74 81-172 228-304 (864)
35 PF14397 ATPgrasp_ST: Sugar-tr 93.0 0.61 1.3E-05 43.7 9.1 89 89-192 62-163 (285)
36 PRK12999 pyruvate carboxylase; 92.7 0.19 4.1E-06 55.8 5.8 65 89-157 146-210 (1146)
37 PRK00885 phosphoribosylamine-- 92.6 0.25 5.4E-06 48.5 6.1 71 82-156 118-190 (420)
38 TIGR00514 accC acetyl-CoA carb 92.5 0.13 2.8E-06 51.1 4.0 55 103-157 152-206 (449)
39 PRK06019 phosphoribosylaminoim 92.3 0.29 6.4E-06 47.3 6.1 89 89-196 125-219 (372)
40 PF15632 ATPgrasp_Ter: ATP-gra 92.0 0.52 1.1E-05 45.2 7.3 76 81-157 122-209 (329)
41 PRK14571 D-alanyl-alanine synt 92.0 0.18 3.8E-06 47.2 4.0 59 103-175 125-183 (299)
42 PRK09288 purT phosphoribosylgl 91.9 0.27 5.9E-06 47.6 5.4 51 103-155 149-199 (395)
43 PRK12833 acetyl-CoA carboxylas 91.9 0.16 3.5E-06 50.7 3.9 65 89-157 145-209 (467)
44 PRK02471 bifunctional glutamat 91.5 0.49 1.1E-05 50.3 7.1 56 103-172 524-582 (752)
45 TIGR01205 D_ala_D_alaTIGR D-al 91.5 0.35 7.5E-06 45.2 5.4 57 103-173 146-202 (315)
46 TIGR01369 CPSaseII_lrg carbamo 91.3 0.37 8E-06 53.1 6.2 68 81-156 684-753 (1050)
47 PRK08591 acetyl-CoA carboxylas 91.3 0.2 4.3E-06 49.6 3.7 65 89-157 142-206 (451)
48 PRK01966 ddl D-alanyl-alanine 91.2 0.29 6.2E-06 46.7 4.6 58 103-174 162-219 (333)
49 PRK13790 phosphoribosylamine-- 91.2 0.56 1.2E-05 45.6 6.7 49 103-155 102-150 (379)
50 PRK06111 acetyl-CoA carboxylas 91.0 0.22 4.9E-06 49.1 3.8 55 103-157 152-206 (450)
51 TIGR00877 purD phosphoribosyla 91.0 0.34 7.3E-06 47.5 5.0 62 88-155 128-191 (423)
52 TIGR01235 pyruv_carbox pyruvat 90.9 0.2 4.3E-06 55.5 3.6 75 89-174 142-216 (1143)
53 PRK05586 biotin carboxylase; V 90.6 0.25 5.5E-06 49.0 3.7 55 103-157 152-206 (447)
54 PF01071 GARS_A: Phosphoribosy 89.9 0.93 2E-05 40.2 6.3 70 83-155 21-90 (194)
55 PRK12815 carB carbamoyl phosph 89.9 0.79 1.7E-05 50.6 7.1 47 103-155 705-751 (1068)
56 PF02786 CPSase_L_D2: Carbamoy 89.6 0.2 4.3E-06 44.9 1.8 66 88-157 27-92 (211)
57 PRK05294 carB carbamoyl phosph 89.4 0.56 1.2E-05 51.7 5.6 51 103-157 704-754 (1066)
58 PRK13278 purP 5-formaminoimida 89.4 0.45 9.9E-06 46.1 4.3 50 104-155 150-200 (358)
59 PRK14568 vanB D-alanine--D-lac 89.2 0.41 8.9E-06 45.8 3.8 47 103-155 165-211 (343)
60 PRK14569 D-alanyl-alanine synt 89.1 0.41 8.8E-06 44.8 3.7 55 103-172 130-184 (296)
61 PRK07178 pyruvate carboxylase 89.0 0.37 8.1E-06 48.2 3.6 55 103-157 151-205 (472)
62 TIGR01435 glu_cys_lig_rel glut 88.8 1.2 2.5E-05 47.3 7.1 57 104-174 512-571 (737)
63 COG2308 Uncharacterized conser 88.8 2.1 4.5E-05 42.4 8.3 134 30-196 312-458 (488)
64 PF02222 ATP-grasp: ATP-grasp 88.4 6.2 0.00013 34.2 10.3 89 88-197 17-113 (172)
65 PLN02257 phosphoribosylamine-- 87.9 1.8 3.9E-05 43.0 7.5 65 88-156 126-190 (434)
66 TIGR02712 urea_carbox urea car 87.7 0.87 1.9E-05 50.9 5.6 54 103-156 150-203 (1201)
67 PRK13789 phosphoribosylamine-- 87.1 1.2 2.6E-05 44.1 5.7 54 103-156 143-196 (426)
68 PRK13277 5-formaminoimidazole- 86.9 1.2 2.5E-05 43.3 5.3 62 103-170 152-216 (366)
69 PRK14572 D-alanyl-alanine synt 86.9 0.76 1.6E-05 44.1 4.1 57 103-173 171-227 (347)
70 PF07478 Dala_Dala_lig_C: D-al 86.6 0.99 2.2E-05 40.1 4.4 148 103-300 33-182 (203)
71 KOG0238|consensus 86.0 0.31 6.6E-06 48.9 0.8 57 103-159 148-204 (670)
72 KOG0369|consensus 85.1 0.52 1.1E-05 48.8 2.0 67 89-159 174-240 (1176)
73 KOG2157|consensus 83.9 0.54 1.2E-05 47.4 1.5 43 253-303 350-395 (497)
74 PRK05294 carB carbamoyl phosph 83.8 3.7 8E-05 45.4 8.1 91 82-180 144-241 (1066)
75 COG1038 PycA Pyruvate carboxyl 83.7 0.68 1.5E-05 48.9 2.2 76 79-158 135-213 (1149)
76 PHA02117 glutathionylspermidin 83.2 1.9 4.2E-05 42.4 5.0 59 105-172 309-367 (397)
77 TIGR02049 gshA_ferroox glutama 83.0 11 0.00023 36.8 9.7 101 101-215 255-362 (403)
78 COG4770 Acetyl/propionyl-CoA c 82.2 0.61 1.3E-05 47.4 1.2 56 103-158 152-207 (645)
79 PRK06395 phosphoribosylamine-- 80.7 3.5 7.7E-05 40.9 6.0 47 104-156 142-192 (435)
80 PRK14570 D-alanyl-alanine synt 80.1 2.1 4.5E-05 41.5 4.0 56 103-172 171-226 (364)
81 TIGR01369 CPSaseII_lrg carbamo 79.9 6.7 0.00015 43.4 8.3 51 103-157 162-212 (1050)
82 PLN02948 phosphoribosylaminoim 75.2 6.3 0.00014 40.7 6.1 47 103-155 156-203 (577)
83 PRK06524 biotin carboxylase-li 75.0 4 8.7E-05 41.2 4.4 46 103-155 181-226 (493)
84 PLN02735 carbamoyl-phosphate s 73.6 4.9 0.00011 44.7 5.1 50 103-156 737-786 (1102)
85 PRK12815 carB carbamoyl phosph 73.1 6 0.00013 43.9 5.6 67 82-156 144-212 (1068)
86 COG0151 PurD Phosphoribosylami 72.5 20 0.00043 35.6 8.3 69 83-155 122-190 (428)
87 PRK10507 bifunctional glutathi 65.2 11 0.00023 39.3 5.1 59 104-170 528-586 (619)
88 PF08886 GshA: Glutamate-cyste 62.5 9 0.0002 37.4 3.8 103 101-217 258-367 (404)
89 COG3919 Predicted ATP-grasp en 62.1 13 0.00028 35.4 4.5 65 81-154 129-199 (415)
90 PRK05784 phosphoribosylamine-- 62.0 15 0.00032 37.2 5.4 22 105-126 146-167 (486)
91 PLN02735 carbamoyl-phosphate s 60.7 15 0.00033 40.9 5.7 49 104-156 181-229 (1102)
92 COG1759 5-formaminoimidazole-4 60.4 5.8 0.00013 37.9 2.0 53 103-155 150-203 (361)
93 COG1821 Predicted ATP-utilizin 54.2 6.5 0.00014 36.5 1.2 22 103-124 138-159 (307)
94 PF03133 TTL: Tubulin-tyrosine 53.0 3.8 8.3E-05 38.0 -0.5 21 283-303 231-254 (292)
95 COG0754 Gsp Glutathionylspermi 53.0 9.8 0.00021 36.9 2.2 46 105-157 298-343 (387)
96 PRK14573 bifunctional D-alanyl 49.5 24 0.00053 37.8 4.9 47 103-155 610-656 (809)
97 PF04174 CP_ATPgrasp_1: A circ 47.5 16 0.00035 35.1 2.8 78 28-126 232-310 (330)
98 PF08442 ATP-grasp_2: ATP-gras 42.7 73 0.0016 28.3 6.1 51 81-134 18-74 (202)
99 COG0027 PurT Formate-dependent 41.8 1.1E+02 0.0023 29.6 7.2 78 85-174 132-209 (394)
100 COG1181 DdlA D-alanine-D-alani 32.4 2.3E+02 0.005 27.0 8.1 152 92-301 131-294 (317)
101 TIGR01016 sucCoAbeta succinyl- 30.0 1.2E+02 0.0026 29.3 5.9 65 88-155 28-103 (386)
102 PF10281 Ish1: Putative stress 29.6 71 0.0015 20.2 2.9 15 228-242 2-16 (38)
103 PF02750 Synapsin_C: Synapsin, 26.8 1.7E+02 0.0037 26.2 5.6 102 39-175 8-109 (203)
104 COG2232 Predicted ATP-dependen 26.8 41 0.00088 32.5 1.8 36 104-155 150-185 (389)
105 PF02041 Auxin_BP: Auxin bindi 23.3 84 0.0018 26.9 2.9 23 164-187 117-139 (167)
106 PF13973 DUF4222: Domain of un 20.2 1.2E+02 0.0025 21.1 2.7 28 169-196 15-42 (53)
No 1
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=100.00 E-value=3.1e-56 Score=415.94 Aligned_cols=249 Identities=41% Similarity=0.707 Sum_probs=125.9
Q ss_pred CCCCceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccchhhHHHHHHHHHhCCCC
Q psy9333 25 MNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPAS 104 (308)
Q Consensus 25 l~~~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~lp~e~~~f~~~~~~~~~~ 104 (308)
+.++|+||||||++.||+|+.|+++++++.+... .. .+|+|+||.||.+..+|.+.+.+.+.+
T Consensus 4 ~~~~q~vN~~p~~~~l~~K~~l~~~l~~~~~~~~--------------~~---~~~~p~t~~l~~~~~~~~~~~~~~~~~ 66 (292)
T PF03133_consen 4 MKPFQKVNHFPGSQELTRKDLLAKNLQRYRKKFP--------------KE---FDFYPETFILPQDYKEFLKYFEKNPKN 66 (292)
T ss_dssp -CHHTT-TSS--EEEE----------------------------------------------HHHHHHHHHHHHHTTS--
T ss_pred CCCCeeEccCCCCchhhhhHHHHHHHHHHHhhcC--------------Cc---ccCCcceEecHHHHHHHHHHHhcCCCC
Confidence 5668999999999999999999999999876542 11 379999999999999999999888889
Q ss_pred eEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEeeecCcEEEEE
Q psy9333 105 TWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCYLF 184 (308)
Q Consensus 105 ~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts~~Pl~vy~y 184 (308)
+||+||++++||+||.++++++++.++. .....++||||||+||+||+|||||||+||||+|++||+||+|
T Consensus 67 ~wI~KP~~~~rG~GI~l~~~~~~i~~~~---------~~~~~~~vvQkYI~~PlLi~grKFDlR~yvlvts~~pl~vy~y 137 (292)
T PF03133_consen 67 LWIVKPSNGSRGRGIKLFNNLEQILRFS---------KNKNQPYVVQKYIENPLLIDGRKFDLRVYVLVTSLNPLRVYLY 137 (292)
T ss_dssp -EEEEES-------EEEES-HHHHHCCH---------CCTTS-EEEEE--SSB--BTTB-EEEEEEEEE-T--T--EEEE
T ss_pred EEEEeccccCCCCCceecCCHHHHHHHh---------hhhhhhhhhhhccCCCeEEeeeeEEEEEEEEEeeccceeeeec
Confidence 9999999999999999999999987541 2356899999999999999999999999999999999999999
Q ss_pred cCceEeecCCCCCCCcccccccccCCccccccccCC---CcC-CCCCCccchHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q psy9333 185 KLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGA---DYN-NIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIV 260 (308)
Q Consensus 185 ~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~~~---~~~-~~~g~~wsl~~l~~~L~~~~g~~~~~~i~~~I~~ii~ 260 (308)
++|++|+|+++|+....+..+.++||||+++||+.+ ++. ...+++|++..|++++.. |.+ .+.+|++|.++|+
T Consensus 138 ~~g~vR~~~~~Y~~~~~~~~~~~~HlTN~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~-~~~~~~~i~~~i~ 214 (292)
T PF03133_consen 138 KEGYVRFASEPYDPDLDDLSDRFAHLTNYSIQKKSESNEEDSNEENGNKWSLDQFEEYLKE--GID-WEKIWEKICDIII 214 (292)
T ss_dssp S--EEEE-SS------------------------------------EEEHHHHHHHCTTTS--SS--STTTCHHHHHHHH
T ss_pred cCceEEeccceeeccccccccccccccccccccccccccccccccccccchhhhhhhhccc--CCC-cccchhhhhHHHH
Confidence 999999999999754568889999999999999843 222 235689999999999976 444 4678888888888
Q ss_pred HHHHHHH-----HHHhhhcccc--------cCCCCCccchhhhccccccccCCcc
Q psy9333 261 HSLKSVS-----YIMAKKWSRE--------SKTPFNPILVKESYVISKYIDNPLL 302 (308)
Q Consensus 261 ~t~~a~~-----p~~~~~~~~~--------~~~~f~p~l~~~~~~~d~l~d~~~~ 302 (308)
.++.++. ..+.....++ .|..++|||+|+|.+|++-.++|++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~Fel~G~DfmlD~~~kpwLLEvN~~Psl~~~~~~~ 269 (292)
T PF03133_consen 215 KTILAAEFRSSQPNMPPRPNCFELFGFDFMLDEDLKPWLLEVNSNPSLSTSTPVD 269 (292)
T ss_dssp HHHHHH-HHHHH--TTSSSEE-EEEEEEEEEBTTS-EEEEEEESS------TTTH
T ss_pred HHhhhhhhhhccccccccccccceeeeEEEecCCCeEEEeeCCCCCCcccCCHhH
Confidence 8888882 2333332222 2888899999999999888777653
No 2
>KOG2156|consensus
Probab=100.00 E-value=8.9e-55 Score=417.09 Aligned_cols=243 Identities=36% Similarity=0.599 Sum_probs=215.6
Q ss_pred cccCCCCceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccchhhHHHHHHHHHhC
Q psy9333 22 GYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKN 101 (308)
Q Consensus 22 ~~~l~~~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~lp~e~~~f~~~~~~~ 101 (308)
...+++||+||||||+..|+|||.|.+++.+.+..+.. .+ +.|+|.||+||+|+++|.++..++
T Consensus 240 fr~ir~HQkvNH~PGsF~IGRKD~lW~~~~~~~~rf~~-------------ke---f~fmPrtyilP~d~e~lrk~w~~n 303 (662)
T KOG2156|consen 240 FRAIRSHQKVNHFPGSFRIGRKDRLWRNILRNQVRFGK-------------KE---FGFMPRTYILPADREELRKYWEKN 303 (662)
T ss_pred hhhhhhhhhhccCCCccccccchHHHHHHHHHHHHhcc-------------cc---cCccceeeeccccHHHHHHHHhhC
Confidence 34588999999999999999999999999998887732 23 489999999999999999999998
Q ss_pred CCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEeeecCcEE
Q psy9333 102 PASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKC 181 (308)
Q Consensus 102 ~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts~~Pl~v 181 (308)
++..|||||.+.+||.||.+.++.+++. ...+.|||+||++|+||+|.|||+|+||+|||++||+|
T Consensus 304 asr~wIVkppasaRg~gIrv~~kw~q~p--------------k~rpLvvQ~yieRP~ling~KFDlrlYv~vts~nPLRI 369 (662)
T KOG2156|consen 304 ASRLWIVKPPASARGIGIRVINKWSQFP--------------KDRPLVVQKYIERPLLINGSKFDLRLYVVVTSVNPLRI 369 (662)
T ss_pred ccccEEecCcccccCcceEeccchhhCC--------------CcccHHHHHHhhcceeecCcceeEEEEEEEeecCceEE
Confidence 8889999999999999999999877663 46789999999999999999999999999999999999
Q ss_pred EEEcCceEeecCCCCCCCcccccccccCCccccccccCC-----CcCCCCCCccchHHHHHHHHHccCCCcHHHHHHHHH
Q psy9333 182 YLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGA-----DYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNIS 256 (308)
Q Consensus 182 y~y~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~~~-----~~~~~~g~~wsl~~l~~~L~~~~g~~~~~~i~~~I~ 256 (308)
|+|++||+|||+.+|.+...++.|.+||+|||+++|.+. .|+...|.+|++..++.|+++ .|.+ +++||++|+
T Consensus 370 y~y~dgL~RFasvkYsp~~a~~~dKymhltnYs~nke~~ys~~k~~n~~~g~kwtl~~lw~~l~~-qGvd-t~kIW~qir 447 (662)
T KOG2156|consen 370 YIYNDGLVRFASVKYSPFDANNVDKYMHLTNYSPNKESNYSLNKYFNACQGSKWTLKSLWLYLDN-QGVD-TDKIWEQIR 447 (662)
T ss_pred EEeccceeeeccccCCcccccccceeEEeccccccccchhhhhhHHhhcCCchhhHHHHHHHHHh-cCCC-HHHHHHHHH
Confidence 999999999999999988889999999999999999766 344457899999999999987 4888 799999999
Q ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCccchhhhccccccccC
Q psy9333 257 WLIVHSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDN 299 (308)
Q Consensus 257 ~ii~~t~~a~~p~~~~~~~~~~~~~f~p~l~~~~~~~d~l~d~ 299 (308)
.+|++||.|.++.|..-..+.. -+|..|||+||+|+++|+
T Consensus 448 ~iV~kti~s~E~~i~~~lr~~~---~~~~~CfELfgFDiilDe 487 (662)
T KOG2156|consen 448 NIVIKTIISGEKGINSMLRNYV---ENPYSCFELFGFDIILDE 487 (662)
T ss_pred HHHHHHhhccChhHHHHHHHHh---cCCchhhhhhcceEEecC
Confidence 9999999999988776433221 346788888888888888
No 3
>KOG2157|consensus
Probab=100.00 E-value=2.3e-47 Score=373.90 Aligned_cols=282 Identities=40% Similarity=0.554 Sum_probs=238.5
Q ss_pred eeeeeehhhcccCccccccCCCC-ceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeecc
Q psy9333 6 ILKCIQTCRNIFSLELGYRMNDN-QIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPIT 84 (308)
Q Consensus 6 ~~~~~~~~~~~f~~~~~~~l~~~-Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T 84 (308)
-|.+.+.+...++ .+.++ |++||||++..|++||.|++++++|+..+..++.+.+.. ..|.++++.|.+
T Consensus 110 ~w~~~~~~~~~~~-----~~~p~~~~~~~~p~~~~L~rkd~l~~~i~r~~~~~e~~~~~~~~~-----~~~~~ld~~~~~ 179 (497)
T KOG2157|consen 110 YWRGYEGIDFDFS-----WLAPYNQVVNHFPRRKELTRKDLLMKLIKRYLALLERSRLPKAQL-----EDYILLDYVETT 179 (497)
T ss_pred EEeccccccHHHh-----hhcchhhhhhccccHHHhhhhHHhhhhHHHHHHhccccccchhhc-----ccceeecccchh
Confidence 4777777776666 55566 999999999999999999999999999876554433222 235567999999
Q ss_pred ccchhhHHHHHHHHHh-CCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCc
Q psy9333 85 FILPADYNMFVEEYRK-NPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGK 163 (308)
Q Consensus 85 ~~lp~e~~~f~~~~~~-~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~gr 163 (308)
+.+|.+...++.++.+ .+.+.||+||++.+||+||.+++.+++++++..... ...+......++||+||++|+||+|+
T Consensus 180 ~~~~~~~~~~v~e~~~~~~~~~wIvKP~~~srg~GI~~~~~l~~l~~~~~~~~-~~~s~~~~~~~vv~~yi~~plli~~~ 258 (497)
T KOG2157|consen 180 FVLLDEYKKLVEEYEEDSERSWWIVKPASKSRGRGIFLFNTLSDLQAIVDSFD-SFISENNDEGYVVSAYIDRPLLIGGH 258 (497)
T ss_pred hhhhhHHHHHHHHHHhccccceEEeccccccccceeEEecchhhhhhhhhccc-ccccccccccceeeeeccCccccCCc
Confidence 9999999999999987 678999999999999999999999999988765433 34455678999999999999999999
Q ss_pred cceeeEEEEEeeecCcEEEEEcCceEeecCCCCCCCcccccccccCCccccccccCCCcCCC-----CCCccchHHHHHH
Q psy9333 164 KFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNI-----HGGKMNLQNLRLY 238 (308)
Q Consensus 164 KFDlR~yvLvts~~Pl~vy~y~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~~~~~~~~-----~g~~wsl~~l~~~ 238 (308)
|||||.|||+++.+||.+|.|++|++|||+++|+. +++++|.++||||++|||+++++... ++++|++..|..|
T Consensus 259 KfDlR~~vlvt~~~pl~~y~yreg~lRf~t~~y~~-~~nl~n~~~HLtN~siqK~~~~~~~~~s~~~~~~~w~~~~~~~y 337 (497)
T KOG2157|consen 259 KFDLRQYVLVTHFDPLLLYRYREGFLRFSTEPYGP-LVNLQNMSVHLTNVSIQKLYPNYCHLSSLLSESCKWTLNSLLLY 337 (497)
T ss_pred eeeeeEEEEeecccchhheeeccceEEEEeccCcc-hhhhcccchhhhccccccCCCCcccccccccCCCcccHHHHHHH
Confidence 99999999999999999999999999999999976 88999899999999999999998764 7899999999999
Q ss_pred HHHc-cCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhcccc--------cCCCCCccchhhhccccccccC
Q psy9333 239 LEST-RGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSRE--------SKTPFNPILVKESYVISKYIDN 299 (308)
Q Consensus 239 L~~~-~g~~~~~~i~~~I~~ii~~t~~a~~p~~~~~~~~~--------~~~~f~p~l~~~~~~~d~l~d~ 299 (308)
|++. .+..+....+..|...|+.++.++++.+...++.+ +|.+++|||+|+|.+||+-.+.
T Consensus 338 l~~~~~~~~~~~~~i~~~~~~iv~~v~~s~~~~~~~~n~FElyG~DfliD~~lkpwLiEiNssP~~~~t~ 407 (497)
T KOG2157|consen 338 LRNIGSPCLELKLQIKPIITGIVLSVFASATTVPSLANCFELYGFDFLIDEALKPWLIEINASPDLTQTT 407 (497)
T ss_pred HHhhcCCcccccccchhhhhhhhhhhhhhccccccccchhhhhCcceeecCCCCeEEEEeecCCcccccc
Confidence 9973 23344577889999999999999999888655444 3677777777777777776554
No 4
>KOG2158|consensus
Probab=100.00 E-value=7.9e-41 Score=317.55 Aligned_cols=240 Identities=28% Similarity=0.446 Sum_probs=205.4
Q ss_pred CceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccchhhHHHHHHHHHhCCCCeEE
Q psy9333 28 NQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWI 107 (308)
Q Consensus 28 ~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~lp~e~~~f~~~~~~~~~~~wI 107 (308)
.|++|||||+.+++ |+.|- |.+|++.+. ..| .|+|.+|++|+++..|.+.+... ..++|
T Consensus 172 fqrvn~fPgm~e~~-kd~Ls--l~~mqkifp--------------eey---~fyp~sw~lPa~l~df~a~~~~~-Krtfi 230 (565)
T KOG2158|consen 172 FQRENNFPGMREKE-KDILD--LLEMQKIFP--------------EEY---MFYPTSWRLPAPLCDFPASTEIM-KRTFI 230 (565)
T ss_pred hhhhhcCchHHHHH-HHHHh--HHHHHhcCh--------------HHh---cCCCccccCchHHHHHHHHHHHh-cccEE
Confidence 79999999999999 99998 888888764 466 79999999999999999888654 45999
Q ss_pred EcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccc-cCccceeeEEEEEeeecCcEEEEEcC
Q psy9333 108 MKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLI-GGKKFDLRLYVLVTSFRPLKCYLFKL 186 (308)
Q Consensus 108 ~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi-~grKFDlR~yvLvts~~Pl~vy~y~~ 186 (308)
+||+.|++|.||.+.+++.++.. ....++|+||..|||+ |+.|||+|+|+|++|++||+||++++
T Consensus 231 vkpDsgaqg~giylisDir~~g~--------------~Q~~~vQeyV~~pLli~dkyKfd~rvy~likSvdPlsIfva~e 296 (565)
T KOG2158|consen 231 VKPDSGAQGSGIYLISDIREKGE--------------YQNKKVQEYVTYPLLISDKYKFDQRVYSLIKSVDPLSIFVASE 296 (565)
T ss_pred ECCCCCCCCcceeeechhhhhhH--------------HHHHHHHHHhcccccccccceeeeeeeeeeeccCcceEEEecc
Confidence 99999999999999976554432 2347999999999999 99999999999999999999999999
Q ss_pred ceEeecCCCCCCC-cccccccccCCccccccccCCCcCC-----CCCCccchHHHHHHHHHccCCCcHHHHHHHHHHHHH
Q psy9333 187 GFCRFCTVKYDKN-ITELDNMYVHLTNVSVQKHGADYNN-----IHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIV 260 (308)
Q Consensus 187 g~vR~a~~~Y~~~-~~~~~~~~~HLTN~siqk~~~~~~~-----~~g~~wsl~~l~~~L~~~~g~~~~~~i~~~I~~ii~ 260 (308)
|++|||+++|..+ ..|.++.++|||||++||.+.+|.- ..|++..++.....+++ .|.+ ...+|..|+.+++
T Consensus 297 GlaRFcTeky~ePts~n~~~lymhlTnYslnk~nsny~hsd~sq~~gSkR~Lsti~~ql~s-~gvd-tk~vwsDik~v~i 374 (565)
T KOG2158|consen 297 GLARFCTEKYIEPTSANRSHLYMHLTNYSLNKPNSNYAHSDNSQVSGSKRQLSTINEQLDS-LGVD-TKFVWSDIKIVFI 374 (565)
T ss_pred chhhhhhccccCCCcccHHHHHHHHHHhhhcCCCccccccCcccccchhHHHHHHHHHHHh-cCch-HHHHHhhhhhhhc
Confidence 9999999999873 4688999999999999999999853 24778888877788887 4777 6899999999999
Q ss_pred HHHHHHHHHHhhhcccccCCCCCccchhhhccccccccC---Ccccc
Q psy9333 261 HSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDN---PLLIG 304 (308)
Q Consensus 261 ~t~~a~~p~~~~~~~~~~~~~f~p~l~~~~~~~d~l~d~---~~~~~ 304 (308)
+|.+|..|.+.+++....++.-.-..||+..|.|.+++. |++++
T Consensus 375 ktvlA~~peLk~~y~~~fp~h~tgpacfqi~gfDi~~~~k~~pille 421 (565)
T KOG2158|consen 375 KTVLAESPELKEDYIDNFPYHKTGPACFQIIGFDIVKQRKVLPILLE 421 (565)
T ss_pred chhhhcCHHHHHHHHHhCCCCCcCCceEEEeccchhhccccchHHHH
Confidence 999999999999987766554333488888888888887 55544
No 5
>KOG2155|consensus
Probab=99.97 E-value=2.7e-31 Score=251.28 Aligned_cols=242 Identities=22% Similarity=0.329 Sum_probs=192.7
Q ss_pred ccccccCCCCceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccchhhHHHHHHHH
Q psy9333 19 LELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEY 98 (308)
Q Consensus 19 ~~~~~~l~~~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~lp~e~~~f~~~~ 98 (308)
+.....-++-|.+|+||.+.+||.||.|+..+++-. | -.+|+|.||.|..++.+|+++|
T Consensus 345 ykkls~e~p~~~iNQFPfE~cltvKd~LA~~a~r~~------g---------------~~~Wlq~TyNL~TqLpqFv~~f 403 (631)
T KOG2155|consen 345 YKKLSEENPCGMINQFPFESCLTVKDLLAACAMRDP------G---------------KNDWLQLTYNLNTQLPQFVARF 403 (631)
T ss_pred HHHHhccCCcceeccCchHHHHHHHHHHHHHHhhcC------C---------------CCcccccccccccchHHHHHHH
Confidence 345567889999999999999999999999886521 1 1279999999999999999888
Q ss_pred H----hCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEe
Q psy9333 99 R----KNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVT 174 (308)
Q Consensus 99 ~----~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvt 174 (308)
. .+.+|.||+||++.+||-...+..++++|.++++ .++-||||||++|+|..|-|||||..||+.
T Consensus 404 q~Rer~g~~N~WI~KPWNlAR~~Dt~vT~~L~~IIRm~E-----------tgPKiv~kYIe~P~LFr~gKFDlRYiVllr 472 (631)
T KOG2155|consen 404 QNRERNGQHNVWIVKPWNLARGMDTTVTEDLNQIIRMIE-----------TGPKIVCKYIERPLLFRNGKFDLRYIVLLR 472 (631)
T ss_pred HHHHhcCcCceEEechhhhhhcccchhhhhHHHHHHHHh-----------cCchHHHHhcCCcceeecCccceEEEEEEc
Confidence 4 3568999999999999999999999999999875 468899999999999987799999999999
Q ss_pred eecCcEEEEEcCceEeecCCCCCCCcccccccccCCccccccccCCCcCCCCCCccchHHHHHHHHHccCCCcHHHHHHH
Q psy9333 175 SFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTN 254 (308)
Q Consensus 175 s~~Pl~vy~y~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~~~~~~~~~g~~wsl~~l~~~L~~~~g~~~~~~i~~~ 254 (308)
|+.||++|+|+..++|||..+| ++.++.+...|+|-+ ||.. .=.....++|-.-+++..+.--++.+...
T Consensus 473 si~Pl~~yvy~~FWiRfsnn~f--sL~~f~dyEtHFTVm-------NY~~-kl~q~~ceeFi~~~ek~yp~~pw~dvq~~ 542 (631)
T KOG2155|consen 473 SIAPLTAYVYNRFWIRFSNNEF--SLSNFEDYETHFTVM-------NYLE-KLLQMKCEEFIGEFEKGYPCFPWEDVQCS 542 (631)
T ss_pred cccchhhhheeheeeeecCCcc--chhhhhhhhhhhhhh-------hHHH-HHhhccHHHHHHHHhhcCCCCCcchhhhH
Confidence 9999999999999999999999 667999999999977 3331 11223445555556554443335677788
Q ss_pred HHHHHHHHHHHHHHH---Hh---hhccccc---------CCC--CCccchhhhccccccccCCcc
Q psy9333 255 ISWLIVHSLKSVSYI---MA---KKWSRES---------KTP--FNPILVKESYVISKYIDNPLL 302 (308)
Q Consensus 255 I~~ii~~t~~a~~p~---~~---~~~~~~~---------~~~--f~p~l~~~~~~~d~l~d~~~~ 302 (308)
|..+|...+.+|... +. ...+|++ +.+ ++|.++|+||.||=--.|.|.
T Consensus 543 i~~aire~~eaaak~~~e~g~a~~p~sramygvDlml~~~~~pVmq~qILEVNFnPDc~RACrYh 607 (631)
T KOG2155|consen 543 IVPAIREPFEAAAKLNPECGAALLPNSRAMYGVDLMLAGDLTPVMQPQILEVNFNPDCKRACRYH 607 (631)
T ss_pred HHHHHHHHHhhhhccCCcccccCCchhhhhhhheeeeccCCCccccceeEEEecCcchHHHhhcC
Confidence 888888888887422 11 1223332 333 999999999999977666654
No 6
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=99.23 E-value=5.5e-11 Score=109.91 Aligned_cols=199 Identities=19% Similarity=0.234 Sum_probs=132.2
Q ss_pred cccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCC
Q psy9333 39 ELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQG 116 (308)
Q Consensus 39 ~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G 116 (308)
.+-+|-..++.|.+... +..++|+|..+ ++++..|++.|. .-++||..|++|
T Consensus 15 ~~~~Kw~v~~~L~~~~~---------------------l~~~LP~T~~~~~~~~l~~~L~~y~-----~vylKP~~Gs~G 68 (262)
T PF14398_consen 15 GFFDKWEVYKALSRDPE---------------------LRPYLPETELLTSFEDLREMLNKYK-----SVYLKPDNGSKG 68 (262)
T ss_pred CCCCHHHHHHHHHcCCc---------------------chhhCCCceEcCCHHHHHHHHHHCC-----EEEEEeCCCCCC
Confidence 35688888888875211 23689999887 368999998883 346799999999
Q ss_pred CceEEEcCchHHHhhhhccCCC---------------CCCcccccceEEeeccCCCccccCccceeeEEEEEeeecCcEE
Q psy9333 117 NGIFLINKLSKLKKWSRESKTP---------------FNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKC 181 (308)
Q Consensus 117 ~GI~l~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts~~Pl~v 181 (308)
+||..+.....--.+....+.. .........||||++|+ -..++||.||+|+.|.-.....
T Consensus 69 ~gI~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~yIiQq~I~-l~~~~gr~fD~RvlvqK~~~G~--- 144 (262)
T PF14398_consen 69 KGIIRIEKKGGGYRIQYRNKKKNVRRTFSSLEELEQFLKELLGKRRYIIQQGIP-LATYDGRPFDFRVLVQKNGSGK--- 144 (262)
T ss_pred ccEEEEEEeCCEEEEEEccCCceeEEEeCCHHHHHHHHHHhcCCCcEEEeCCcc-ccccCCCeEEEEEEEEECCCCC---
Confidence 9999887654311111100000 11123567999999995 4557999999999999876433
Q ss_pred EEEcCceEeecCCCCCCCcccccccccCCccccccccCCCcCCCCCCccchHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Q psy9333 182 YLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVH 261 (308)
Q Consensus 182 y~y~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~~~~~~~~~g~~wsl~~l~~~L~~~~g~~~~~~i~~~I~~ii~~ 261 (308)
|......+|+|...- -+||.+- -|..++++++ |... .. .+.+..+|+++...
T Consensus 145 W~vtg~~~Rva~~~~------------ivTN~~~----------GG~~~~~~~~---l~~~--~~-~~~~~~~l~~~a~~ 196 (262)
T PF14398_consen 145 WQVTGIVARVAKPGS------------IVTNLSQ----------GGTALPFEEV---LRQS--EE-AEKIREELEDLALE 196 (262)
T ss_pred EEEEEEEEEEcCCCC------------ceeccCC----------CceecCHHHH---HHhh--hh-HHHHHHHHHHHHHH
Confidence 888899999987654 2344421 1334555544 3332 11 46777888888777
Q ss_pred HHHHHHHHHhhhcccc------cCCCCCccchhhhcccccc
Q psy9333 262 SLKSVSYIMAKKWSRE------SKTPFNPILVKESYVISKY 296 (308)
Q Consensus 262 t~~a~~p~~~~~~~~~------~~~~f~p~l~~~~~~~d~l 296 (308)
+-.+.+..+... ..+ .|..-++|+.|+|--|+..
T Consensus 197 ia~~le~~~~~~-~gElGiDl~iD~~g~iWliEvN~kP~~~ 236 (262)
T PF14398_consen 197 IAQALEKHFGGH-LGELGIDLGIDKNGKIWLIEVNSKPGKF 236 (262)
T ss_pred HHHHHHHhcCCc-eeEEEEEEEEcCCCCEEEEEEeCCCCcc
Confidence 777666444431 112 4888899999999988754
No 7
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=97.79 E-value=4.2e-05 Score=67.17 Aligned_cols=80 Identities=31% Similarity=0.547 Sum_probs=42.8
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
+|+|+.. +.+..+|.+++. +..-|+||..|++|+|+.++++.+++...++... ....+.++|+||+.+
T Consensus 18 vP~t~~~~~~~~~~~~~~~~~---~~p~ViKp~~g~~G~gV~~i~~~~~~~~~l~~~~------~~~~~~~~Q~fI~~~- 87 (190)
T PF08443_consen 18 VPETRVTNSPEEAKEFIEELG---GFPVVIKPLRGSSGRGVFLINSPDELESLLDAFK------RLENPILVQEFIPKD- 87 (190)
T ss_dssp ---EEEESSHHHHHHHHHHH-----SSEEEE-SB-------EEEESHCHHHHHHH-----------TTT-EEEE----S-
T ss_pred CCCEEEECCHHHHHHHHHHhc---CCCEEEeeCCCCCCCEEEEecCHHHHHHHHHHHH------hccCcceEeccccCC-
Confidence 6888776 678888888874 4468999999999999999999888877654321 134678999999743
Q ss_pred cccCccceeeEEEEEe
Q psy9333 159 LIGGKKFDLRLYVLVT 174 (308)
Q Consensus 159 Li~grKFDlR~yvLvt 174 (308)
+| -|+|++|+=-
T Consensus 88 --~g--~d~Rv~Vig~ 99 (190)
T PF08443_consen 88 --GG--RDLRVYVIGG 99 (190)
T ss_dssp --S-----EEEEEETT
T ss_pred --CC--cEEEEEEECC
Confidence 12 4999888753
No 8
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=97.74 E-value=0.00011 Score=64.06 Aligned_cols=81 Identities=20% Similarity=0.377 Sum_probs=46.9
Q ss_pred CCeeeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCc-hHHHhhhhccCCCCCCcccccceEEeecc
Q psy9333 78 LDFIPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKL-SKLKKWSRESKTPFNPILVKESYVISKYI 154 (308)
Q Consensus 78 ~~~~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~-~~i~~~~~~~~~~~~~~~~~~~~VvQkYI 154 (308)
.+++|+|++- ..++..|++.+ + .||+||..+..|+|+..++.. ..+....+.. .......+++|+||
T Consensus 9 ~~~~P~T~vs~~~~~i~~f~~~~----~-~~VlKPl~g~gG~gV~~i~~~~~n~~~i~e~~-----~~~~~~~~mvQ~fl 78 (173)
T PF02955_consen 9 PELIPPTLVSRDKEEIRAFIEEH----G-DIVLKPLDGMGGRGVFRISRDDPNLNSILETL-----TKNGERPVMVQPFL 78 (173)
T ss_dssp CCCS--EEEES-HHHHHHHHHHH----S-SEEEEESS--TTTT-EEE-TT-TTHHHHHHHH-----TTTTTS-EEEEE--
T ss_pred cccCcCEEEECCHHHHHHHHHHC----C-CEEEEECCCCCCcCEEEEcCCCCCHHHHHHHH-----HhcCCccEEEEecc
Confidence 4789999987 45777888776 2 299999999999999999873 2222222211 01234689999999
Q ss_pred CCCccccCccceeeEEEEE
Q psy9333 155 DNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 155 ~~PlLi~grKFDlR~yvLv 173 (308)
.. .-+| |.|+.++=
T Consensus 79 p~--i~~G---DkRii~~n 92 (173)
T PF02955_consen 79 PE--IKEG---DKRIILFN 92 (173)
T ss_dssp GG--GGG----EEEEEEET
T ss_pred cc--ccCC---CEEEEEEC
Confidence 54 3466 77876654
No 9
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=97.35 E-value=0.00055 Score=65.15 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=64.9
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCch-HHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLS-KLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~-~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+|+|.+. +.+...|.++. .+.--|+||..|+.|+|+.++++.+ ++....+... ......+++|+||..|
T Consensus 134 vP~T~i~~~~~~~~~~~~~~---~g~pvVlKp~~Gs~G~gV~~v~~~d~~l~~~~e~~~-----~~~~~~~ivQeyi~~~ 205 (318)
T COG0189 134 VPPTLITRDPDEAAEFVAEH---LGFPVVLKPLDGSGGRGVFLVEDADPELLSLLETLT-----QEGRKLIIVQEYIPKA 205 (318)
T ss_pred CCCEEEEcCHHHHHHHHHHh---cCCCEEEeeCCCCCccceEEecCCChhHHHHHHHHh-----ccccceEehhhhcCcc
Confidence 6899887 34666676655 3456799999999999999999988 7777665431 1123469999999866
Q ss_pred ccccCccceeeEEEEEeeecCcEEEEEcCceEeec
Q psy9333 158 LLIGGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFC 192 (308)
Q Consensus 158 lLi~grKFDlR~yvLvts~~Pl~vy~y~~g~vR~a 192 (308)
- =|.|.++++-.. |..+| ++.|.+
T Consensus 206 ~------~~~rrivv~~~~-~~~~y----~~~R~~ 229 (318)
T COG0189 206 K------RDDRRVLVGGGE-VVAIY----ALARIP 229 (318)
T ss_pred c------CCcEEEEEeCCE-EeEEe----eecccc
Confidence 3 467777777552 44444 555543
No 10
>PRK05246 glutathione synthetase; Provisional
Probab=97.34 E-value=0.00053 Score=64.96 Aligned_cols=76 Identities=22% Similarity=0.341 Sum_probs=52.4
Q ss_pred Ceeeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCc-h---HHHhhhhccCCCCCCcccccceEEee
Q psy9333 79 DFIPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKL-S---KLKKWSRESKTPFNPILVKESYVISK 152 (308)
Q Consensus 79 ~~~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~-~---~i~~~~~~~~~~~~~~~~~~~~VvQk 152 (308)
.++|+|... +.++.+|++++. ..|+||..|++|+||..+... . .+...... ....++++|+
T Consensus 133 ~~vP~T~~~~~~~~~~~~~~~~~-----~vVlKP~~G~~G~gV~~i~~~~~~~~~~~~~l~~--------~~~~~~lvQ~ 199 (316)
T PRK05246 133 ELMPPTLVTRDKAEIRAFRAEHG-----DIILKPLDGMGGAGIFRVKADDPNLGSILETLTE--------HGREPVMAQR 199 (316)
T ss_pred ccCCCEEEeCCHHHHHHHHHHCC-----CEEEEECCCCCccceEEEeCCCccHHHHHHHHHH--------ccCCeEEEEe
Confidence 468999876 456677776652 579999999999999999542 2 22222211 1346899999
Q ss_pred ccCCCccccCccceeeEEEE
Q psy9333 153 YIDNPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 153 YI~~PlLi~grKFDlR~yvL 172 (308)
||+.+- + -|+|++|+
T Consensus 200 ~I~~~~--~---~D~Rv~vv 214 (316)
T PRK05246 200 YLPEIK--E---GDKRILLV 214 (316)
T ss_pred ccccCC--C---CCEEEEEE
Confidence 996432 2 29998876
No 11
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=97.22 E-value=0.00083 Score=57.30 Aligned_cols=80 Identities=21% Similarity=0.408 Sum_probs=47.7
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
.|+++.+ ..++..+.... +..||+||..++.|+|+.++.+.+++.+..+..... .......+|+|+||+
T Consensus 19 ~P~~~~~~~~~~~~~~~~~~----~~p~vvKp~~g~gs~gv~~~~~~~~l~~~~~~~~~~--~~~~~~~~ivqe~i~--- 89 (184)
T PF13535_consen 19 VPKTRIVDSEEELRAFAEDL----GFPFVVKPVDGSGSRGVFIVHSPEELEAALAEIRED--SPLGNGPVIVQEYIP--- 89 (184)
T ss_dssp ---EEEECSHHHHHHHHHHS----SSSEEEEESS-STTTT-EEESSHHHHHHHHHHHHHH--HS-HSSSEEEEE------
T ss_pred CCCEEEECCHHHHHHHHHHc----CCCEEEEcCccccCCCEEEeCCHHHHHHHHHHHHHh--cccCCccEEEEEeee---
Confidence 6777766 34555555443 367999999999999999999999998875432100 001246899999996
Q ss_pred cccCccceeeEEEE
Q psy9333 159 LIGGKKFDLRLYVL 172 (308)
Q Consensus 159 Li~grKFDlR~yvL 172 (308)
|.-+.+++++.
T Consensus 90 ---g~e~~~~~~~~ 100 (184)
T PF13535_consen 90 ---GDEYSVDGVVD 100 (184)
T ss_dssp ---SEEEEEEEEEE
T ss_pred ---eeeEEEEEEEE
Confidence 55555555544
No 12
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.20 E-value=0.00079 Score=61.55 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=54.0
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
+|+|+.+ +.++..+...+ +-.+|+||..|+.|+|+.++++.+++....+.... .......+++|+||+.
T Consensus 103 ~P~t~~~~~~~~~~~~~~~~----~~p~vvKP~~g~~g~gv~~i~~~~~l~~~~~~~~~---~~~~~~~~lvQe~I~~-- 173 (277)
T TIGR00768 103 QPRTGLAGSPEEALKLIEEI----GFPVVLKPVFGSWGRLVSLARDKQAAETLLEHFEQ---LNGPQNLFYVQEYIKK-- 173 (277)
T ss_pred CCCEEEeCCHHHHHHHHHhc----CCCEEEEECcCCCCCceEEEcCHHHHHHHHHHHHH---hcccCCcEEEEeeecC--
Confidence 5787766 34556665544 34699999999999999999998887654432100 0011257999999973
Q ss_pred cccCcc-ceeeEEEE
Q psy9333 159 LIGGKK-FDLRLYVL 172 (308)
Q Consensus 159 Li~grK-FDlR~yvL 172 (308)
.. +|+|++++
T Consensus 174 ----~~~~~~rv~v~ 184 (277)
T TIGR00768 174 ----PGGRDIRVFVV 184 (277)
T ss_pred ----CCCceEEEEEE
Confidence 23 69999874
No 13
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=96.98 E-value=0.0042 Score=58.81 Aligned_cols=77 Identities=21% Similarity=0.336 Sum_probs=52.1
Q ss_pred Ceeeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCch----HHHhhhhccCCCCCCcccccceEEee
Q psy9333 79 DFIPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLS----KLKKWSRESKTPFNPILVKESYVISK 152 (308)
Q Consensus 79 ~~~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~----~i~~~~~~~~~~~~~~~~~~~~VvQk 152 (308)
..+|+|.+. +.+..+|++.+. ..|+||..|++|+|+..++..+ .+...... .....+++|+
T Consensus 132 ~~vP~T~v~~~~~~~~~~~~~~g-----~vVvKPl~G~~G~gv~~v~~~~~~~~~~~~~~~~--------~~~~~~~vQ~ 198 (312)
T TIGR01380 132 KVIPPTLVTRDKAEIRAFLAEHG-----DIVLKPLDGMGGEGIFRLDPGDPNFNSILETMTQ--------RGREPVMAQR 198 (312)
T ss_pred CCCCCEEEeCCHHHHHHHHHHcC-----CEEEEECCCCCCceEEEEcCCCccHHHHHHHHHh--------ccCCcEEEEe
Confidence 468999875 456677776552 4799999999999999886522 12222211 1246899999
Q ss_pred ccCCCccccCccceeeEEEEE
Q psy9333 153 YIDNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 153 YI~~PlLi~grKFDlR~yvLv 173 (308)
||..+ .+ -|+|++|+=
T Consensus 199 yI~~~---~~--~D~Rv~vv~ 214 (312)
T TIGR01380 199 YLPEI---KE--GDKRILLID 214 (312)
T ss_pred ccccc---cC--CCEEEEEEC
Confidence 99642 22 499998863
No 14
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=96.94 E-value=0.0065 Score=55.93 Aligned_cols=80 Identities=21% Similarity=0.333 Sum_probs=52.4
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
+|+|+.+ +.+...+...+ +-.+|+||..|+.|+|+.++.+.+++.+..+.... . .......+++|+||+.|
T Consensus 102 ~P~t~~~~~~~~~~~~~~~~----~~P~vvKP~~g~~g~gv~~v~~~~~l~~~~~~~~~-~-~~~~~~~~ivQefI~~~- 174 (280)
T TIGR02144 102 TPRTYLAFDREAALKLAEAL----GYPVVLKPVIGSWGRLVALIRDKDELESLLEHKEV-L-GGSQHKLFYIQEYINKP- 174 (280)
T ss_pred CCCeEeeCCHHHHHHHHHHc----CCCEEEEECcCCCcCCEEEECCHHHHHHHHHHHHh-h-cCCcCCeEEEEcccCCC-
Confidence 4777665 34444444333 34589999999999999999998877664321100 0 01123579999999743
Q ss_pred cccCccceeeEEEE
Q psy9333 159 LIGGKKFDLRLYVL 172 (308)
Q Consensus 159 Li~grKFDlR~yvL 172 (308)
-.|+|++|+
T Consensus 175 -----~~d~~v~vi 183 (280)
T TIGR02144 175 -----GRDIRVFVI 183 (280)
T ss_pred -----CCceEEEEE
Confidence 358999886
No 15
>PRK12458 glutathione synthetase; Provisional
Probab=96.94 E-value=0.0022 Score=61.55 Aligned_cols=78 Identities=28% Similarity=0.405 Sum_probs=52.5
Q ss_pred eeeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchH--HHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 80 FIPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSK--LKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 80 ~~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~--i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
.+|.|++. +.++..|++++ .....|+||..|++|+|+.++.+.+. +....+.. .....+++|+||.
T Consensus 140 ~vP~T~v~~~~~~~~~~~~~~---~~~pvVvKPl~G~gG~gV~~v~~~~~~~~~~ile~~-------~~~~~~ivQeyI~ 209 (338)
T PRK12458 140 VRPTTHISRNKEYIREFLEES---PGDKMILKPLQGSGGQGVFLIEKSAQSNLNQILEFY-------SGDGYVIAQEYLP 209 (338)
T ss_pred CCCCEEEeCCHHHHHHHHHHc---CCCeEEEEECCCCCccCeEEEecCChhhHHHHHHHH-------hhCCCEEEEEccc
Confidence 58888776 45666776654 12238999999999999999976442 33333211 1235899999996
Q ss_pred CCccccCccceeeEEEE
Q psy9333 156 NPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 156 ~PlLi~grKFDlR~yvL 172 (308)
.+ . ..|+|++|+
T Consensus 210 ~~---~--~gDiRv~vv 221 (338)
T PRK12458 210 GA---E--EGDVRILLL 221 (338)
T ss_pred CC---C--CCCEEEEEE
Confidence 43 1 359999964
No 16
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=96.90 E-value=0.0026 Score=59.61 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=53.0
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
+|+|... +.+...+..++ .+..+|+||..++.|+|+.++++.+++....+... .....+++|+||..+
T Consensus 114 ~P~t~~~~~~~~~~~~~~~~---~~~P~VvKP~~g~~g~GV~~v~~~~~~~~~~~~~~------~~~~~~lvQe~I~~~- 183 (300)
T PRK10446 114 LPVTGIAHSPDDTSDLIDMV---GGAPLVVKLVEGTQGIGVVLAETRQAAESVIDAFR------GLNAHILVQEYIKEA- 183 (300)
T ss_pred CCCEEEeCCHHHHHHHHHHh---CCCCEEEEECCCCCcccEEEEcCHHHHHHHHHHHH------hcCCCEEEEeeeccC-
Confidence 5676654 34455555433 13468999999999999999988777665544210 123579999999632
Q ss_pred cccCccceeeEEEE
Q psy9333 159 LIGGKKFDLRLYVL 172 (308)
Q Consensus 159 Li~grKFDlR~yvL 172 (308)
. -.|+|+.|+
T Consensus 184 --~--g~d~rv~vi 193 (300)
T PRK10446 184 --Q--GCDIRCLVV 193 (300)
T ss_pred --C--CceEEEEEE
Confidence 2 369999976
No 17
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=96.82 E-value=0.0035 Score=59.91 Aligned_cols=76 Identities=14% Similarity=0.247 Sum_probs=53.6
Q ss_pred eeccccchhhHHHHHH-HHHhCCCCeEEEcCCCC---CCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 81 IPITFILPADYNMFVE-EYRKNPASTWIMKPCGK---SQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 81 ~P~T~~lp~e~~~f~~-~~~~~~~~~wI~KP~~~---~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
.|+|+.....-.+... ....+.+---|+||-.+ +.|+|+.++.+.+.+..+ ..++++|+||+.
T Consensus 129 ~P~t~v~~~~~~al~~~~~~~~l~~P~V~KPl~g~Gss~gh~m~lv~~~~~L~~l-------------~~p~~lQEfVnh 195 (328)
T PLN02941 129 VPKQLVVYDDESSIPDAVALAGLKFPLVAKPLVADGSAKSHKMSLAYDQEGLSKL-------------EPPLVLQEFVNH 195 (328)
T ss_pred CCCEEEEcCHHHHHHHHHHHhcCCCCEEEeecccCCCccccceEEecCHHHHHhc-------------CCcEEEEEecCC
Confidence 7898887443222211 11122344589999988 999999999988777542 247999999987
Q ss_pred CccccCccceeeEEEEEee
Q psy9333 157 PLLIGGKKFDLRLYVLVTS 175 (308)
Q Consensus 157 PlLi~grKFDlR~yvLvts 175 (308)
| | .|+|+||+=..
T Consensus 196 ~----g--~d~RVfVvGd~ 208 (328)
T PLN02941 196 G----G--VLFKVYVVGDY 208 (328)
T ss_pred C----C--EEEEEEEECCE
Confidence 6 5 49999998765
No 18
>PF14403 CP_ATPgrasp_2: Circularly permuted ATP-grasp type 2
Probab=96.48 E-value=0.0082 Score=59.50 Aligned_cols=103 Identities=21% Similarity=0.336 Sum_probs=60.7
Q ss_pred CCeeeccccchh-------hHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCch--HHHhhhhccCCCCCCcccccce
Q psy9333 78 LDFIPITFILPA-------DYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLS--KLKKWSRESKTPFNPILVKESY 148 (308)
Q Consensus 78 ~~~~P~T~~lp~-------e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~--~i~~~~~~~~~~~~~~~~~~~~ 148 (308)
-.++|-|..+.. +-...++.... ....||+||..+..|+|+.+=...+ +=.+.+++ ...++|
T Consensus 307 ~~HvP~T~~l~~~~~~~~g~~~dL~~~~~a-~r~~lVLKP~D~Ygg~GV~~G~e~~~eeW~~~l~~--------a~~~~y 377 (445)
T PF14403_consen 307 RRHVPWTRLLTAGRTTYQGEDVDLVEFAIA-NRDRLVLKPNDEYGGKGVYIGWETSPEEWEAALEE--------AAREPY 377 (445)
T ss_pred HHhCCceEEEcCccccccccchhHHHHHHh-chhcEEeccccccCCCCeEECCcCCHHHHHHHHHH--------HhcCCc
Confidence 467999999965 22222222222 3568999999999999998876532 22222222 134699
Q ss_pred EEeeccCCCccc-----cCccceeeEEEEEeeecCcEEEEEcC----ceEeecCCC
Q psy9333 149 VISKYIDNPLLI-----GGKKFDLRLYVLVTSFRPLKCYLFKL----GFCRFCTVK 195 (308)
Q Consensus 149 VvQkYI~~PlLi-----~grKFDlR~yvLvts~~Pl~vy~y~~----g~vR~a~~~ 195 (308)
|+|+|+.-+-+- +|. +.+.-+...+. | |+|.+ ++.|+++.+
T Consensus 378 ilQe~v~~~~~~~~~~~dg~-~~~~~~~~~~g--~---fly~~~~~G~~tR~g~~~ 427 (445)
T PF14403_consen 378 ILQEYVRPPREPMPAFEDGE-VVFEEYPYDSG--P---FLYGGKFAGCYTRLGTGN 427 (445)
T ss_pred EEEEEecCCccccccccCCc-eeEeeeeeecc--c---eeECCEEEEEEEEeccCC
Confidence 999999854331 332 33333333322 3 77764 467776443
No 19
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=95.68 E-value=0.055 Score=50.87 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=36.4
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-.+|+||..++.|+|+.++++.+++....+. ...+++|+||.
T Consensus 148 ~~P~viKP~~g~~s~gv~~v~~~~el~~~~~~----------~~~~lvqeyi~ 190 (326)
T PRK12767 148 QFPLFVKPRDGSASIGVFKVNDKEELEFLLEY----------VPNLIIQEFIE 190 (326)
T ss_pred CCCEEEEeCCCCCccCeEEeCCHHHHHHHHHh----------CCCeEEEeccC
Confidence 45799999999999999999999998876653 23899999994
No 20
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=95.45 E-value=0.033 Score=56.87 Aligned_cols=73 Identities=23% Similarity=0.424 Sum_probs=50.7
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEE-EcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFL-INKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+|+++.. +.+..+|.++. +. -|+||..|++|+||.+ +++.+++.+..+... .....+++|+||.
T Consensus 312 VP~~~~~~~~~~~~~~~~~~----G~-vVVKP~~G~~G~Gv~v~v~~~~eL~~a~~~a~------~~~~~vlvEe~i~-- 378 (547)
T TIGR03103 312 VPEQQLAGNGEAVEAFLAEH----GA-VVVKPVRGEQGKGISVDVRTPDDLEAAIAKAR------QFCDRVLLERYVP-- 378 (547)
T ss_pred CCCEEEECCHHHHHHHHHHh----CC-EEEEECCCCCCcCeEEecCCHHHHHHHHHHHH------hcCCcEEEEEecc--
Confidence 5666655 34555555543 22 6999999999999997 788888876554321 1235799999995
Q ss_pred ccccCccceeeEEEE
Q psy9333 158 LLIGGKKFDLRLYVL 172 (308)
Q Consensus 158 lLi~grKFDlR~yvL 172 (308)
| .|+|+.|+
T Consensus 379 ----G--~d~Rv~Vi 387 (547)
T TIGR03103 379 ----G--EDLRLVVI 387 (547)
T ss_pred ----C--CeEEEEEE
Confidence 3 49999765
No 21
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=95.35 E-value=0.037 Score=51.59 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=49.6
Q ss_pred eeccccch--hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFILP--ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~lp--~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
.|+++.+. .+...+.+.. +-.+|+||..++.|+|+.++.+.+++.+..+... .....+++|+||.
T Consensus 113 ~p~~~~~~~~~~~~~~~~~~----~~P~ivKP~~g~~s~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~i~--- 179 (304)
T PRK01372 113 TPPWIVLTREEDLLAAIDKL----GLPLVVKPAREGSSVGVSKVKEEDELQAALELAF------KYDDEVLVEKYIK--- 179 (304)
T ss_pred CCCEEEEeCcchHHHHHhhc----CCCEEEeeCCCCCCCCEEEeCCHHHHHHHHHHHH------hcCCcEEEEcccC---
Confidence 46666553 2333333322 4468999999999999999999888876553310 1246799999995
Q ss_pred cccCccceeeEEEE
Q psy9333 159 LIGGKKFDLRLYVL 172 (308)
Q Consensus 159 Li~grKFDlR~yvL 172 (308)
|+ ++++.|+
T Consensus 180 ---G~--E~~v~vi 188 (304)
T PRK01372 180 ---GR--ELTVAVL 188 (304)
T ss_pred ---CE--EEEEEEE
Confidence 54 6677654
No 22
>PRK06849 hypothetical protein; Provisional
Probab=94.73 E-value=0.1 Score=50.68 Aligned_cols=64 Identities=22% Similarity=0.458 Sum_probs=41.9
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
+|+|+.+ ++++..+..+ ..+.-+|+||..++.|+|+.++.+.+.+.... .....++|+|+||.-
T Consensus 131 vP~t~~v~~~~~l~~~~~~---~~~~P~vlKP~~~~~~~~v~~~~~~~~l~~~~---------~~~~~~~ivQe~I~G 196 (389)
T PRK06849 131 VPKTYLITDPEAIRNFMFK---TPHTPYVLKPIYSRFVRRVDLLPKEAALKELP---------ISKDNPWVMQEFIQG 196 (389)
T ss_pred CCCEEEeCCHHHHHHHhhc---CCCCcEEEEeCcccCCCeEEEecCHHHhcccc---------cCCCCCeEEEEEecC
Confidence 5888876 3454444322 12568999999999999999987744332211 112357999999973
No 23
>PRK14016 cyanophycin synthetase; Provisional
Probab=94.62 E-value=0.068 Score=56.47 Aligned_cols=74 Identities=22% Similarity=0.335 Sum_probs=50.2
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEE-EcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFL-INKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+|+++.. +.+..++.++. +-.-|+||..|+.|+|+.+ +++.+++....+... .....++||+||.
T Consensus 229 vP~~~~v~s~~~a~~~a~~i----G~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~------~~~~~viVEe~I~-- 296 (727)
T PRK14016 229 VPEGRVVTSAEDAWEAAEEI----GYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVAS------KESSDVIVERYIP-- 296 (727)
T ss_pred CCCeeEeCCHHHHHHHHHHc----CCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHH------HhCCeEEEEEecC--
Confidence 4555544 34444444333 4567999999999999998 888888876554221 1236899999995
Q ss_pred ccccCccceeeEEEE
Q psy9333 158 LLIGGKKFDLRLYVL 172 (308)
Q Consensus 158 lLi~grKFDlR~yvL 172 (308)
| .|+|++|+
T Consensus 297 ----G--~d~Rv~Vv 305 (727)
T PRK14016 297 ----G--KDHRLLVV 305 (727)
T ss_pred ----C--ceEEEEEE
Confidence 3 48998765
No 24
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.52 E-value=0.08 Score=50.66 Aligned_cols=62 Identities=13% Similarity=0.314 Sum_probs=43.7
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCC-CCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKS-QGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
|+++.+ +.++.++.+.. +-.+|+||..++ .|+|+.++++.+++.+..+.. ....+++|+||+
T Consensus 114 p~~~~~~~~~~~~~~~~~~----g~P~vvKp~~~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~I~ 178 (352)
T TIGR01161 114 PPFLVIKDEEELDAALQEL----GFPVVLKARTGGYDGRGQYRIRNEADLPQAAKEL--------GDRECIVEEFVP 178 (352)
T ss_pred CCccEeCCHHHHHHHHHHc----CCCEEEEeCCCCCCCCCEEEECCHHHHHHHHHhc--------CCCcEEEEecCC
Confidence 454444 34444444433 457899999864 899999999999887765532 234899999997
No 25
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=94.27 E-value=0.027 Score=56.00 Aligned_cols=56 Identities=14% Similarity=0.248 Sum_probs=41.8
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
+---|+||+.|..|+|++++++.+++.+..+.-+.............++|||++|-
T Consensus 152 GyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~ea~~~fg~~~v~iEk~i~~~r 207 (449)
T COG0439 152 GYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGEAEAAFGNPRVYLEKFIEGPR 207 (449)
T ss_pred CCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEeeeeccCCc
Confidence 35679999999999999999999998876543221111223456699999999983
No 26
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=94.20 E-value=0.08 Score=50.43 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=29.5
Q ss_pred eeccccch---hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchH
Q psy9333 81 IPITFILP---ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSK 127 (308)
Q Consensus 81 ~P~T~~lp---~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~ 127 (308)
+|+|+.+- ...+.+.+.... ...-|+||..|++|+||.++.+.++
T Consensus 52 vP~T~~~~s~~~~~~~l~~~~~~--~~~VVVKPl~Gs~GrGI~~i~~~~~ 99 (317)
T TIGR02291 52 VPELYGVIHNQAEVKTIHNIVKD--HPDFVIKPAQGSGGKGILVITSRKD 99 (317)
T ss_pred CCCEEEecCchhhHHHHHHHHcc--CCCEEEEECCCCCccCeEEEEeccc
Confidence 58887662 233333333322 2357999999999999999976543
No 27
>PRK07206 hypothetical protein; Provisional
Probab=94.07 E-value=0.11 Score=50.78 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=47.2
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCC-CcccccceEEeeccCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFN-PILVKESYVISKYIDN 156 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~-~~~~~~~~VvQkYI~~ 156 (308)
.|+++.+ +.|...+++...- .+...|+||..++.|+|+.++++.+++.+..+....... .......+++|+||+-
T Consensus 123 ~p~~~~~~~~~e~~~~~~~~g~-~~~P~VvKP~~g~gs~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~~lvEe~i~G 200 (416)
T PRK07206 123 AARQINTADWEEAEAWLRENGL-IDRPVVIKPLESAGSDGVFICPAKGDWKHAFNAILGKANKLGLVNETVLVQEYLIG 200 (416)
T ss_pred cccEEecCCHHHHHHHHHhcCC-CCCCEEEeCCCCCCCCCEEEeCCHHHHHHHHHHHHhccccCCCCCCeEEEEEcccc
Confidence 4565555 3455555543210 123789999999999999999999988776543210000 0112367999999963
No 28
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=94.00 E-value=0.053 Score=54.79 Aligned_cols=65 Identities=17% Similarity=0.277 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
.+..++.++. +-.+|+||..|+.|+|+.++.+.+++.+..+..............+++|+||+.|
T Consensus 142 ~e~~~~a~~i----gyPvvIKp~~GgGG~Gv~iv~~~~eL~~a~~~~~~~a~~~f~~~~v~vE~~I~~~ 206 (499)
T PRK08654 142 EEAKEIAEEI----GYPVIIKASAGGGGIGMRVVYSEEELEDAIESTQSIAQSAFGDSTVFIEKYLEKP 206 (499)
T ss_pred HHHHHHHHHh----CCCEEEEeCCCCCCCeEEEeCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 4444454443 4579999999999999999999998877654311000001124579999999865
No 29
>PRK08462 biotin carboxylase; Validated
Probab=93.73 E-value=0.075 Score=52.57 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=38.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+-.+|+||..++.|+|+.++++.+++....+..............+++|+||+.|
T Consensus 154 g~PvvvKP~~g~gs~Gv~~v~~~~eL~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 208 (445)
T PRK08462 154 GYPVILKAAAGGGGRGMRVVEDESDLENLYLAAESEALSAFGDGTMYMEKFINNP 208 (445)
T ss_pred CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeccCCCC
Confidence 5579999999999999999999998876543210000001123579999999755
No 30
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=93.67 E-value=0.12 Score=51.95 Aligned_cols=55 Identities=24% Similarity=0.352 Sum_probs=38.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+-..|+||..|+.|+|+.++++.+++....+..............+++++||+.|
T Consensus 152 gyPvvvKP~~ggGg~Gv~iv~~~~eL~~a~~~~~~~a~~~~~~~~vlvEefI~~~ 206 (478)
T PRK08463 152 GYPVILKASGGGGGRGIRVVHKEEDLENAFESCKREALAYFNNDEVFMEKYVVNP 206 (478)
T ss_pred CCCEEEEeCCCCCCCceEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 4578999999999999999999998877554210000001234679999999754
No 31
>PRK02186 argininosuccinate lyase; Provisional
Probab=93.30 E-value=0.18 Score=54.46 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=45.7
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
.|+++.+ +.+..++.... +-.+|+||..++.|+|+.++++.+++.+..+... ......++||+||+
T Consensus 122 ~P~~~~v~~~~e~~~~~~~~----~~PvVVKP~~g~gS~GV~~v~~~~el~~a~~~~~-----~~~~~~~lvEEfI~ 189 (887)
T PRK02186 122 VPRTHALALRAVALDALDGL----TYPVVVKPRMGSGSVGVRLCASVAEAAAHCAALR-----RAGTRAALVQAYVE 189 (887)
T ss_pred CCCEEEeCCHHHHHHHHHhC----CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHH-----hcCCCcEEEeeccc
Confidence 3565554 23444444332 4568999999999999999999988877654321 01256899999996
No 32
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=93.19 E-value=0.17 Score=48.69 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=44.7
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
|+++.+ .+++..+.+.. +-..|+||..++.|+|+.++++.+++....+..... .......+++|+||+
T Consensus 117 p~~~~~~~~~~~~~~~~~~----g~P~VvKP~~g~~s~gv~~v~~~~el~~~~~~~~~~--~~~~~~~~ivEe~i~ 186 (380)
T TIGR01142 117 SRYMFADSLDELREAVEKI----GYPCVVKPVMSSSGKGQSVVRGPEDIEKAWEYAQEG--ARGGAGRVIVEEFID 186 (380)
T ss_pred CCceEeCCHHHHHHHHHHc----CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhh--ccCCCCCEEEEEecC
Confidence 444444 23444444332 457899999999999999999999887765432100 001235799999996
No 33
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=93.19 E-value=0.033 Score=47.46 Aligned_cols=41 Identities=20% Similarity=0.611 Sum_probs=17.3
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
...||+||..|+.|.||.++++.+++.... ....++|+||+
T Consensus 31 ~~~~viKp~~G~Gg~~i~~~~~~~~~~~~~------------~~~~i~Qe~i~ 71 (161)
T PF02655_consen 31 DGPWVIKPRDGAGGEGIRIVDSEDELEEFL------------NKLRIVQEFIE 71 (161)
T ss_dssp SSSEEEEESS-------B--SS--TTE-------------------EEEE---
T ss_pred CCcEEEEeCCCCCCCCeEEECCchhhcccc------------ccceEEeeeeC
Confidence 568999999999999999999876554321 12239999996
No 34
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=93.08 E-value=0.21 Score=53.86 Aligned_cols=74 Identities=18% Similarity=0.350 Sum_probs=50.7
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEE-EcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFL-INKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l-~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+|++..+ +.+..++..+. +...++||..++.|+|+.+ +.+.+++.+..+... .....++||+||.
T Consensus 228 vP~~~~~~s~~ea~~~~~~i----g~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~------~~~~~vlVEefI~-- 295 (864)
T TIGR02068 228 VPEGTVVQSAEDAWEAAQDL----GYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAV------EESSGVIVERFIT-- 295 (864)
T ss_pred CCCEEEECCHHHHHHHHHHc----CCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHH------hhCCcEEEEEecc--
Confidence 5666554 34555454443 4567999999999999998 888888876544321 1235799999994
Q ss_pred ccccCccceeeEEEE
Q psy9333 158 LLIGGKKFDLRLYVL 172 (308)
Q Consensus 158 lLi~grKFDlR~yvL 172 (308)
|+ |+|++|+
T Consensus 296 ----G~--e~rvlVv 304 (864)
T TIGR02068 296 ----GR--DHRLLVV 304 (864)
T ss_pred ----CC--EEEEEEE
Confidence 53 8888665
No 35
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=93.05 E-value=0.61 Score=43.68 Aligned_cols=89 Identities=18% Similarity=0.307 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchH---------HHhhhhccCCCCCCcccccceEEeeccCCCcc
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSK---------LKKWSRESKTPFNPILVKESYVISKYIDNPLL 159 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~---------i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlL 159 (308)
.++.+|+... .....++||..|++|+||.++...+. +...... .....+|+|++|+.--.
T Consensus 62 ~~l~~~l~~~---~~~~~viKP~~G~~G~Gi~~i~~~~~~~~~~~~~~~~~~~~~--------~~~~~~liqe~i~qh~~ 130 (285)
T PF14397_consen 62 EDLEEFLRKH---APDRFVIKPANGSGGKGILVIDRRDGSEINRDISALYAGLES--------LGGKDYLIQERIEQHPE 130 (285)
T ss_pred HHHHHHHHhc---cCCcEEEEeCCCCCccCEEEEEeecCcccccchhHHHHHHHh--------cCCccEEEEecccCCHH
Confidence 4555555432 34688999999999999999976542 1111111 11128999999985443
Q ss_pred cc----CccceeeEEEEEeeecCcEEEEEcCceEeec
Q psy9333 160 IG----GKKFDLRLYVLVTSFRPLKCYLFKLGFCRFC 192 (308)
Q Consensus 160 i~----grKFDlR~yvLvts~~Pl~vy~y~~g~vR~a 192 (308)
+. .-=-+||+.+++..-.| + .-.++.|++
T Consensus 131 ~~~~~~~svnTiRvvT~~~~~~~---~-~~~a~lRlg 163 (285)
T PF14397_consen 131 LAALSPSSVNTIRVVTFLDDGEV---E-VLMAMLRLG 163 (285)
T ss_pred HHhhCCCCCCcEEEEEEEeCCee---E-EEEEEEEeC
Confidence 32 34568898888765222 1 123567776
No 36
>PRK12999 pyruvate carboxylase; Reviewed
Probab=92.69 E-value=0.19 Score=55.75 Aligned_cols=65 Identities=18% Similarity=0.336 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+++.++.++. +-.+|+||..|+.|+|+.++++.+++....+..............+++|+||+.|
T Consensus 146 eea~~~a~~i----GyPvVVKP~~GgGGrGv~vV~~~eEL~~a~~~a~~ea~~~fg~~~vlVEefI~g~ 210 (1146)
T PRK12999 146 EEALEFAEEI----GYPIMLKASAGGGGRGMRIVRSEEELEEAFERAKREAKAAFGNDEVYLEKYVENP 210 (1146)
T ss_pred HHHHHHHHHh----CCCEEEEECCCCCCCCeEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEecCCCCC
Confidence 3444454443 5679999999999999999999988876544210000001124679999999865
No 37
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=92.64 E-value=0.25 Score=48.51 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=44.8
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
|++..+ +.+..++.+.. +-..|+||..++.|+|+.++.+.+++....+.......-......++||+||+-
T Consensus 118 p~~~~~~~~~~~~~~~~~~----~~P~VvKP~~~~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~G 190 (420)
T PRK00885 118 AAYETFTDAEEALAYLDEK----GAPIVVKADGLAAGKGVVVAMTLEEAKAAVDDMLAGNKFGDAGARVVIEEFLDG 190 (420)
T ss_pred CCeEEeCCHHHHHHHHHHc----CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHhhcccccCCCCeEEEEEccCC
Confidence 444433 34455555433 446899999999999999999988887655432100000012357999999963
No 38
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=92.54 E-value=0.13 Score=51.08 Aligned_cols=55 Identities=22% Similarity=0.348 Sum_probs=38.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+-.+|+||..++.|+|+.++++.+++....+..............++||+||+.|
T Consensus 152 g~PvvvKP~~g~gs~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (449)
T TIGR00514 152 GYPVIIKATAGGGGRGMRVVREPDELVKSISMTRAEAKAAFGNDGVYIEKYIENP 206 (449)
T ss_pred CCCEEEEeCCCCCCCccEEECCHHHHHHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 4568999999999999999999998877654210000001123579999999755
No 39
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=92.31 E-value=0.29 Score=47.33 Aligned_cols=89 Identities=13% Similarity=0.189 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCC-CCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCcccee
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCG-KSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDL 167 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~-~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDl 167 (308)
.++.++.+.. +-.+|+||.. |+.|+|+.++++.+++....+.. ....+|||+||.- ++ .+
T Consensus 125 ~~l~~~~~~~----g~P~vlKp~~~g~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~I~~-----~~--E~ 185 (372)
T PRK06019 125 EDLEAALADL----GLPAVLKTRRGGYDGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPF-----ER--EV 185 (372)
T ss_pred HHHHHHHHHc----CCcEEEEeCCCCcCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecCCC-----Ce--EE
Confidence 4444444333 5679999997 46899999999999988766532 2468999999962 11 22
Q ss_pred eEEEEEee-----ecCcEEEEEcCceEeecCCCC
Q psy9333 168 RLYVLVTS-----FRPLKCYLFKLGFCRFCTVKY 196 (308)
Q Consensus 168 R~yvLvts-----~~Pl~vy~y~~g~vR~a~~~Y 196 (308)
.+-++... .-|..-..+++|....+..|-
T Consensus 186 sv~~~~~~~G~~~~~p~~e~~~~~gi~~~~~~pa 219 (372)
T PRK06019 186 SVIVARGRDGEVVFYPLVENVHRNGILRTSIAPA 219 (372)
T ss_pred EEEEEECCCCCEEEeCCcccEEeCCEEEEEECCC
Confidence 22222211 013333456777776665554
No 40
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=92.02 E-value=0.52 Score=45.16 Aligned_cols=76 Identities=13% Similarity=0.255 Sum_probs=50.3
Q ss_pred eeccccchhhHHHHHHHHHh--CCCCeEEEcCCCCCCCCceEEEc-CchHHHhhhhccCCC---------CCCcccccce
Q psy9333 81 IPITFILPADYNMFVEEYRK--NPASTWIMKPCGKSQGNGIFLIN-KLSKLKKWSRESKTP---------FNPILVKESY 148 (308)
Q Consensus 81 ~P~T~~lp~e~~~f~~~~~~--~~~~~wI~KP~~~~~G~GI~l~~-~~~~i~~~~~~~~~~---------~~~~~~~~~~ 148 (308)
+|+++.. ...++|.+.+.+ .++..-++||..|..|+|.+++. +.+++..+.+..... ........++
T Consensus 122 vp~~~~v-~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~~~~~~i~~~~~~~~l~~~~~~~~l 200 (329)
T PF15632_consen 122 VPPYWRV-RTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFEPDSRRISLDELLAALQRSEEFPPL 200 (329)
T ss_pred CCCEEEe-CCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcCCCcceeCHHHHHHHHhccCCCCCc
Confidence 4565554 455666666654 35677999999999999999998 556666555421111 1112345789
Q ss_pred EEeeccCCC
Q psy9333 149 VISKYIDNP 157 (308)
Q Consensus 149 VvQkYI~~P 157 (308)
||+.|+.-|
T Consensus 201 lvMeyL~G~ 209 (329)
T PF15632_consen 201 LVMEYLPGP 209 (329)
T ss_pred EEecCCCCC
Confidence 999998755
No 41
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=91.98 E-value=0.18 Score=47.19 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEee
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTS 175 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts 175 (308)
+-.||+||..++.|.|+.++.+.+++....+..- .....++||+||+ |+ ++++-|+...
T Consensus 125 ~~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~------~~~~~vlVEeyI~------G~--E~sv~vl~~~ 183 (299)
T PRK14571 125 GYPCVVKPRREGSSIGVFICESDEEFQHALKEDL------PRYGSVIVQEYIP------GR--EMTVSILETE 183 (299)
T ss_pred CCCEEEecCCCCCcCCEEEECCHHHHHHHHHHHH------hhCCcEEEEcccc------ce--EEEEEEEcCC
Confidence 4579999999999999999999888876554310 0234799999995 54 7777777653
No 42
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=91.93 E-value=0.27 Score=47.56 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=37.4
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-..|+||..++.|+|+.++++.+++.+..+..... .......+|||+||+
T Consensus 149 g~P~VvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~--~~~~~~~~lvEefi~ 199 (395)
T PRK09288 149 GYPCVVKPVMSSSGKGQSVVRSPEDIEKAWEYAQEG--GRGGAGRVIVEEFID 199 (395)
T ss_pred CCCEEEEeCCCcCCCCeEEECCHHHHHHHHHHHHhh--ccccCCCEEEEEecC
Confidence 457899999999999999999998887755432100 001136799999996
No 43
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=91.90 E-value=0.16 Score=50.72 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
.+..++.++. +-.+|+||..++.|+|+.++++.+++....+..............++||+||+.+
T Consensus 145 ~e~~~~~~~i----gyPvvvKp~~gggg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~vlvEefi~~~ 209 (467)
T PRK12833 145 DAALEVAARI----GYPLMIKAAAGGGGRGIRVAHDAAQLAAELPLAQREAQAAFGDGGVYLERFIARA 209 (467)
T ss_pred HHHHHHHHHh----CCCEEEEECCCCCCCeEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 4444444433 4579999999999999999999988876543210000001124579999999754
No 44
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=91.51 E-value=0.49 Score=50.28 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=38.7
Q ss_pred CCeEEEcCCCCCCCCceEEEcC---chHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINK---LSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~---~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvL 172 (308)
+-.-|+||..++.|+||.++.+ .+++.+..+.. ......++||+||. |+ |+|+.|+
T Consensus 524 g~PvVVKP~~g~~G~GV~~~~~~~~~eel~~A~~~a------~~~~~~vlVEEfI~------G~--E~Rv~Vi 582 (752)
T PRK02471 524 DKAIVVKPKSTNFGLGISIFKEPASLEDYEKALEIA------FREDSSVLVEEFIV------GT--EYRFFVL 582 (752)
T ss_pred CCCEEEEECCCCCcCCeEEecCcCCHHHHHHHHHHH------HhcCCcEEEEeccc------CC--EEEEEEE
Confidence 3457999999999999998754 44444433221 01235799999994 54 8998776
No 45
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=91.50 E-value=0.35 Score=45.24 Aligned_cols=57 Identities=19% Similarity=0.321 Sum_probs=43.2
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLv 173 (308)
+-.+|+||..++.|.|+.++.+.+++.+..+... .....++||+||+ |+ ++++.++.
T Consensus 146 ~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~------~~~~~~lvEe~i~------G~--e~~v~vi~ 202 (315)
T TIGR01205 146 GFPVIVKPAREGSSVGVSKVKSEEELQAALDEAF------EYDEEVLVEQFIK------GR--ELEVSILG 202 (315)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHH------hcCCcEEEEcCCC------CE--EEEEEEEC
Confidence 4578999999999999999999988877654311 1235799999984 54 77777765
No 46
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=91.33 E-value=0.37 Score=53.07 Aligned_cols=68 Identities=15% Similarity=0.252 Sum_probs=46.5
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
.|+++.+ +.|...+.+.. +-.+|+||..+..|+|+.++.+.+++....+... ......++++|+||+.
T Consensus 684 ~P~~~~v~s~ee~~~~~~~i----gyPvIVKP~~~~Gg~gv~iv~~~eeL~~~l~~a~----~~s~~~~vlVeefI~~ 753 (1050)
T TIGR01369 684 QPKWKTATSVEEAVEFASEI----GYPVLVRPSYVLGGRAMEIVYNEEELRRYLEEAV----EVSPEHPVLIDKYLED 753 (1050)
T ss_pred CCCeEEECCHHHHHHHHHhc----CCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHH----HhCCCCCEEEeecCCC
Confidence 3555544 34444444332 4568999999999999999999999887665321 0123457999999973
No 47
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=91.30 E-value=0.2 Score=49.57 Aligned_cols=65 Identities=17% Similarity=0.276 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
.+..++.+.. +-.+|+||..++.|+|+.++++.+++.+..+..............+++|+||+.+
T Consensus 142 ~~~~~~~~~~----g~PvvvKP~~g~gs~Gv~iv~~~~el~~~~~~~~~~~~~~~~~~~vlvEe~i~g~ 206 (451)
T PRK08591 142 EEALAIAKEI----GYPVIIKATAGGGGRGMRVVRTEAELEKAFSMARAEAKAAFGNPGVYMEKYLENP 206 (451)
T ss_pred HHHHHHHHHc----CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 4444454433 4568999999999999999999998877654310000000123579999999744
No 48
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=91.24 E-value=0.29 Score=46.68 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEe
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVT 174 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvt 174 (308)
+-.||+||..+..|.|+.++.+.+++...++... .....++||+||+ |+ ++++-|+..
T Consensus 162 ~~P~vVKP~~~gsS~Gv~~v~~~~el~~a~~~~~------~~~~~vlvEefI~------G~--E~~v~vl~~ 219 (333)
T PRK01966 162 GLPVFVKPANLGSSVGISKVKNEEELAAALDLAF------EYDRKVLVEQGIK------GR--EIECAVLGN 219 (333)
T ss_pred CCCEEEEeCCCCCccCEEEECCHHHHHHHHHHHH------hcCCcEEEEcCcC------CE--EEEEEEECC
Confidence 4579999999999999999999988877654321 1246899999996 54 666666653
No 49
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=91.20 E-value=0.56 Score=45.62 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=36.8
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-..|+||..++.|+|+.++.+.+++....+.... ......+|||+||+
T Consensus 102 g~PvVvKp~~~~~gkGV~iv~~~~el~~a~~~~~~----~~~~~~vlvEe~i~ 150 (379)
T PRK13790 102 ELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYG----DEEEGTVVFETFLE 150 (379)
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHh----cCCCCeEEEEEccc
Confidence 45789999999999999999999888766543210 01235799999986
No 50
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=91.02 E-value=0.22 Score=49.11 Aligned_cols=55 Identities=22% Similarity=0.319 Sum_probs=38.3
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+-.+|+||..++.|+|+.++++.+++.+..+..............+++|+||..+
T Consensus 152 ~~P~VvKP~~g~gs~Gv~iv~~~~el~~a~~~~~~~~~~~~~~~~~lvEe~i~g~ 206 (450)
T PRK06111 152 GYPVMLKASAGGGGIGMQLVETEQELTKAFESNKKRAANFFGNGEMYIEKYIEDP 206 (450)
T ss_pred CCCEEEEeCCCCCCceEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEcccCCC
Confidence 4578999999999999999999998877654310000000123579999999744
No 51
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=90.95 E-value=0.34 Score=47.47 Aligned_cols=62 Identities=21% Similarity=0.322 Sum_probs=40.8
Q ss_pred hhhHHHHHHHHHhCCCCe-EEEcCCCCCCCCceEEEcCchHHHhhhhccCC-CCCCcccccceEEeeccC
Q psy9333 88 PADYNMFVEEYRKNPAST-WIMKPCGKSQGNGIFLINKLSKLKKWSRESKT-PFNPILVKESYVISKYID 155 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~-wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~VvQkYI~ 155 (308)
+.+..++.+.. +-. +|+||..++.|+|+.++.+.+++....+.... .. ......+++|+||+
T Consensus 128 ~~~~~~~~~~~----g~P~~VvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~--g~~~~~~lvEe~i~ 191 (423)
T TIGR00877 128 PEEALSYIQEK----GAPAIVVKADGLAAGKGVIVAKTNEEAIKAVEEILEQKF--GDAGERVVIEEFLD 191 (423)
T ss_pred HHHHHHHHHhc----CCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHhc--CCCCCeEEEEECcc
Confidence 34444554433 345 99999999999999999998887765432100 00 01135799999996
No 52
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=90.94 E-value=0.2 Score=55.48 Aligned_cols=75 Identities=13% Similarity=0.204 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceee
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLR 168 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR 168 (308)
.+...+.++. +-.+|+||..|+.|+|+.++++.+++....+...............++|+||+.|- ++.
T Consensus 142 eea~~~ae~i----GyPvIVKP~~GGGGrG~riV~~~eEL~~a~~~a~~ea~~~fg~~~vlIEefI~g~r-------eIe 210 (1143)
T TIGR01235 142 EEVLDFAAAI----GYPVIIKASWGGGGRGMRVVRSEADVADAFQRAKSEAKAAFGNDEVYVEKLIERPR-------HIE 210 (1143)
T ss_pred HHHHHHHHHc----CCCEEEEECCCCCCCccEEeCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEcCCCCe-------EEE
Confidence 3444444433 45799999999999999999999888765432110000011345799999998652 455
Q ss_pred EEEEEe
Q psy9333 169 LYVLVT 174 (308)
Q Consensus 169 ~yvLvt 174 (308)
+-++..
T Consensus 211 VqVlgD 216 (1143)
T TIGR01235 211 VQLLGD 216 (1143)
T ss_pred EEEEEe
Confidence 555543
No 53
>PRK05586 biotin carboxylase; Validated
Probab=90.59 E-value=0.25 Score=48.98 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=37.8
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+-..|+||..++.|+|+.++++.+++.+..+..............+++|+||+.|
T Consensus 152 gyPvvvKP~~gggg~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~vivEe~i~g~ 206 (447)
T PRK05586 152 GYPVMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIENP 206 (447)
T ss_pred CCCEEEEECCCCCCCeeEEECCHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCCC
Confidence 4568999999999999999999998876553210000001123579999999754
No 54
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=89.92 E-value=0.93 Score=40.21 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=44.9
Q ss_pred ccccchhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 83 ITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 83 ~T~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
.+|.=+.+..+|++.. .....++||+..+.|+|+.++.+.++..+.+++.-....-.......|+++|++
T Consensus 21 ~~f~~~~~A~~~l~~~---~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIEE~l~ 90 (194)
T PF01071_consen 21 KVFTDYEEALEYLEEQ---GYPYVVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIEEFLE 90 (194)
T ss_dssp EEESSHHHHHHHHHHH---SSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEEE---
T ss_pred eEECCHHHHHHHHHhc---CCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEEeccC
Confidence 3444577788888777 234469999999999999999998766654432210001112357899999986
No 55
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=89.88 E-value=0.79 Score=50.62 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=38.3
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-.+|+||..+..|+|+.++.+.+++....+.. .....++++|+||+
T Consensus 705 gyPvVVKP~~~~Gg~gv~iv~~~eeL~~~l~~~------~s~~~~vlIeefI~ 751 (1068)
T PRK12815 705 GYPVLIRPSYVIGGQGMAVVYDEPALEAYLAEN------ASQLYPILIDQFID 751 (1068)
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHh------hcCCCCEEEEEeec
Confidence 557999999999999999999999888776542 12346899999995
No 56
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=89.57 E-value=0.2 Score=44.93 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=43.9
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 88 PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
..+..+|.++. +-..++||+.+.+|+|+.++.+.+++....+.....-.......+..+.+||++|
T Consensus 27 ~eea~~~a~~i----GyPVliKas~ggGG~gm~iv~~~~eL~~~~~~~~~~s~~~fg~~~v~iek~i~~~ 92 (211)
T PF02786_consen 27 VEEALEFAEEI----GYPVLIKASAGGGGRGMRIVHNEEELEEAFERAQRESPAAFGDGPVLIEKFIEGA 92 (211)
T ss_dssp HHHHHHHHHHH-----SSEEEEETTSSTTTSEEEESSHHHHHHHHHHHHHHHHHHHSTS-EEEEE--SSE
T ss_pred HHHHHHHHHhc----CCceEEeecccccccccccccchhhhhhhhhhccccCccccccceEEEeeehhhh
Confidence 45666776665 4568999999999999999999999887654321000001236789999999876
No 57
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=89.41 E-value=0.56 Score=51.73 Aligned_cols=51 Identities=14% Similarity=0.330 Sum_probs=39.5
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+-.+|+||..+..|+|+.++.+.+++....+.... .....+.+||+||+.+
T Consensus 704 gyPvvVKP~~~~Gg~Gv~iv~~~eeL~~~~~~a~~----~s~~~~vlIEefI~G~ 754 (1066)
T PRK05294 704 GYPVLVRPSYVLGGRAMEIVYDEEELERYMREAVK----VSPDHPVLIDKFLEGA 754 (1066)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHh----hCCCCcEEEEecCCCC
Confidence 45799999999999999999999988876553210 1134679999999866
No 58
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=89.37 E-value=0.45 Score=46.10 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=36.8
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccC-CCCCCcccccceEEeeccC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESK-TPFNPILVKESYVISKYID 155 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~VvQkYI~ 155 (308)
...|+||..++.|+|+.++++.+++.+..+... .... .....+++|+||.
T Consensus 150 ~PvIVKp~~g~ggkGv~i~~s~~El~~~~~~l~~~~~~--~~~~~~iIEEfI~ 200 (358)
T PRK13278 150 RPVIVKLPGAKGGRGYFIAKSPEEFKEKIDKLIERGLI--TEVEEAIIQEYVV 200 (358)
T ss_pred CCEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHhcccc--CCCCeEEEEecCC
Confidence 467999999999999999999988876554311 0000 1147899999996
No 59
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=89.20 E-value=0.41 Score=45.81 Aligned_cols=47 Identities=13% Similarity=0.165 Sum_probs=36.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-.||+||..+..+.|+.++++.+++....+... ......+||+||.
T Consensus 165 ~~P~iVKP~~~gsS~Gv~~v~~~~eL~~a~~~a~------~~~~~vlVEe~I~ 211 (343)
T PRK14568 165 TYPVFVKPARSGSSFGVSKVNSADELDYAIESAR------QYDSKVLIEEAVV 211 (343)
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH------hcCCcEEEECCcC
Confidence 4579999999999999999999998877654321 1235799999985
No 60
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=89.08 E-value=0.41 Score=44.84 Aligned_cols=55 Identities=16% Similarity=0.329 Sum_probs=41.7
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvL 172 (308)
+-.+|+||..+..|.|+.++.+.+++....+... ....++||+||+ |+ ++.+-|+
T Consensus 130 ~~P~vVKP~~ggss~Gv~~v~~~~eL~~a~~~~~-------~~~~~lvEefI~------G~--E~tv~vl 184 (296)
T PRK14569 130 SFPVAVKPSSGGSSIATFKVKSIQELKHAYEEAS-------KYGEVMIEQWVT------GK--EITVAIV 184 (296)
T ss_pred CCCEEEEeCCCCCCcCeEEcCCHHHHHHHHHHHH-------hcCCEEEEcccc------cE--EEEEEEE
Confidence 4468999999999999999999999887665321 124799999994 64 6666554
No 61
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=89.03 E-value=0.37 Score=48.22 Aligned_cols=55 Identities=18% Similarity=0.171 Sum_probs=37.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+-..|+||..++.|+|+.++++.+++....+...............++++||..|
T Consensus 151 gyPvvvKp~~ggGg~Gv~~v~~~~eL~~a~~~~~~~~~~~~~~~~v~iE~~i~~~ 205 (472)
T PRK07178 151 GYPVMLKATSGGGGRGIRRCNSREELEQNFPRVISEATKAFGSAEVFLEKCIVNP 205 (472)
T ss_pred CCcEEEEeCCCCCCCCceEeCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCC
Confidence 4578999999999999999999998876443210000001123568999999654
No 62
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=88.81 E-value=1.2 Score=47.27 Aligned_cols=57 Identities=21% Similarity=0.397 Sum_probs=39.6
Q ss_pred CeEEEcCCCCCCCCceEEEcC---chHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEe
Q psy9333 104 STWIMKPCGKSQGNGIFLINK---LSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVT 174 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~---~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvt 174 (308)
..-++||..++.|.||.++.+ .+++.+..+... ......+||+||. |+ |+|+.|+-.
T Consensus 512 ~PVVVKP~~g~~G~GVsi~~~~~~~eel~~Al~~A~------~~~~~VLVEefI~------G~--EyRv~VIg~ 571 (737)
T TIGR01435 512 KAIVVKPKSTNYGLGITIFKNGFTLEDFQEALNIAF------SEDSSVIIEEFLP------GT--EYRFFVLND 571 (737)
T ss_pred CCEEEeeCCCCCcCCeEEecCcCCHHHHHHHHHHHH------hcCCeEEEEeccc------CC--EEEEEEECC
Confidence 356899999999999999876 344443332110 1235799999995 54 999988743
No 63
>COG2308 Uncharacterized conserved protein [Function unknown]
Probab=88.81 E-value=2.1 Score=42.44 Aligned_cols=134 Identities=19% Similarity=0.259 Sum_probs=83.5
Q ss_pred eecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCee--eccccc--hhhHHHHHHHHHhCCCCe
Q psy9333 30 IINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFI--PITFIL--PADYNMFVEEYRKNPAST 105 (308)
Q Consensus 30 ~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--P~T~~l--p~e~~~f~~~~~~~~~~~ 105 (308)
.+| =||+.++..|.-+.-.=.-.+....+. ..+ +.||.. |++++..++...+
T Consensus 312 iaN-A~GtGV~ddka~~~y~P~~~~~ylge~------------------~lL~nv~T~~c~~~~el~~VL~~l~~----- 367 (488)
T COG2308 312 IAN-ALGTGVADDKALYAYVPQMIEYYLGEE------------------PLLPNVPTYWCGEPDELEHVLANLSE----- 367 (488)
T ss_pred Eec-CCCcCcccchhHHHHHHHHHHHHcccc------------------cccCCCCeeecCCHHHHHHHHhchhh-----
Confidence 344 589999999977654322211121110 112 356655 7787777765533
Q ss_pred EEEcCCCCCCCCceEEEcCc--hHHHhhhhccCCCCCCcccccceEEeeccC---CCccccC----ccceeeEEEEEeee
Q psy9333 106 WIMKPCGKSQGNGIFLINKL--SKLKKWSRESKTPFNPILVKESYVISKYID---NPLLIGG----KKFDLRLYVLVTSF 176 (308)
Q Consensus 106 wI~KP~~~~~G~GI~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~---~PlLi~g----rKFDlR~yvLvts~ 176 (308)
-++||..++.|-|+.+=..+ .++..+.+..+ .....||.|.-++ .|..++| |-.|+|.|++.+.
T Consensus 368 lViK~~~~~gg~~~lvGpa~s~~e~a~~~~~i~------a~p~~~IaQ~~~~lST~Pt~v~~~l~pr~vdlR~f~~~~~- 440 (488)
T COG2308 368 LVIKPVEGSGGYGMLVGPAASKAELAAFAERIK------ADPENYIAQPVLQLSTVPTFVDGGLAPRHVDLRPFALADR- 440 (488)
T ss_pred heEeeeccCCCCcceeccccCHHHHHHHHHHHH------hChhhhcccccccccccceEECCeeccccccceeEEEEcC-
Confidence 38899998888877665443 23333332211 1356788887553 3555554 7899999999976
Q ss_pred cCcEEEEEcCceEeecCCCC
Q psy9333 177 RPLKCYLFKLGFCRFCTVKY 196 (308)
Q Consensus 177 ~Pl~vy~y~~g~vR~a~~~Y 196 (308)
-.+++--.|+.|++...=
T Consensus 441 --~~~~v~pGGLtRVal~~g 458 (488)
T COG2308 441 --DGVQVMPGGLTRVALREG 458 (488)
T ss_pred --CceEEcccceeeeeecCC
Confidence 347888999999997643
No 64
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=88.45 E-value=6.2 Score=34.20 Aligned_cols=89 Identities=19% Similarity=0.230 Sum_probs=58.4
Q ss_pred hhhHHHHHHHHHhCCCCeEEEc-CCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccce
Q psy9333 88 PADYNMFVEEYRKNPASTWIMK-PCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFD 166 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~K-P~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFD 166 (308)
++|+....+.. +-..|+| +..|.-|+|..++++.+++.+..+.. ...++|+.++|. |+
T Consensus 17 ~~~l~~a~~~i----G~P~vlK~~~~GYDGkGq~~i~~~~dl~~a~~~~--------~~~~~ilE~~v~---------f~ 75 (172)
T PF02222_consen 17 LEDLEEAAESI----GFPAVLKTRRGGYDGKGQFVIRSEEDLEKAWQEL--------GGGPCILEEFVP---------FD 75 (172)
T ss_dssp HHHHHHHHHHH----TSSEEEEESSSSCTTTTEEEESSGGGHHHHHHHT--------TTSCEEEEE------------ES
T ss_pred HHHHHHHHHHc----CCCEEEEccCcCcCCCccEEECCHHHHHHHHHhc--------CCCcEEEEeccC---------Cc
Confidence 45777776666 5578999 67899999999999999988766542 467899999994 23
Q ss_pred eeEEEEEee-ec------CcEEEEEcCceEeecCCCCC
Q psy9333 167 LRLYVLVTS-FR------PLKCYLFKLGFCRFCTVKYD 197 (308)
Q Consensus 167 lR~yvLvts-~~------Pl~vy~y~~g~vR~a~~~Y~ 197 (308)
--+=|+++. .+ |+.--++++|.++.+..|-.
T Consensus 76 ~EiSvivaR~~~G~~~~yp~~en~~~~~il~~s~~Pa~ 113 (172)
T PF02222_consen 76 REISVIVARDQDGEIRFYPPVENVHRDGILHESIAPAR 113 (172)
T ss_dssp EEEEEEEEEETTSEEEEEEEEEEEEETTEEEEEEESCS
T ss_pred EEEEEEEEEcCCCCEEEEcCceEEEECCEEEEEECCCC
Confidence 222222222 11 33334678888888877764
No 65
>PLN02257 phosphoribosylamine--glycine ligase
Probab=87.92 E-value=1.8 Score=43.00 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=41.7
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 88 PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
+.+..++++.+ +-..|+||..++.|+|+.++.+.+++.+..+.......-......+|||+||+-
T Consensus 126 ~~e~~~~~~~~----g~PvVVKp~~~~~GkGV~iv~~~~el~~a~~~~~~~~~fg~~~~~vlIEefi~G 190 (434)
T PLN02257 126 PAAAKKYIKEQ----GAPIVVKADGLAAGKGVVVAMTLEEAYEAVDSMLVKGAFGSAGSEVVVEEFLDG 190 (434)
T ss_pred HHHHHHHHHHc----CCCEEEEcCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC
Confidence 34555554433 346799999999999999999988876654331000000012357999999974
No 66
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=87.66 E-value=0.87 Score=50.89 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=37.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
+--+|+||..++.|+|+.++++.+++....+...............++|+||+.
T Consensus 150 gyPvVVKP~~ggGG~GV~iv~~~eEL~~a~~~~~~~~~~~f~~~~vlVEefI~g 203 (1201)
T TIGR02712 150 GYPVMLKSTAGGGGIGMQKCDSAAELAEAFETVKRLGESFFGDAGVFLERFVEN 203 (1201)
T ss_pred CCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCC
Confidence 567999999999999999999998887654321100000112346999999974
No 67
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=87.12 E-value=1.2 Score=44.10 Aligned_cols=54 Identities=15% Similarity=0.160 Sum_probs=37.1
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
+-..|+||..++.|+|+.++.+.+++....+.......-.......|||+||+-
T Consensus 143 ~~PvVVKp~~~~~gkGV~vv~~~eel~~a~~~~~~~~~~g~~~~~vlIEEfl~G 196 (426)
T PRK13789 143 MLPIVIKADGLAAGKGVTVATEKKMAKRALKEIFKDKKFGQSGNQVVIEEFMEG 196 (426)
T ss_pred CCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECcCC
Confidence 447899999999999999999988887655432100000011247999999963
No 68
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=86.93 E-value=1.2 Score=43.34 Aligned_cols=62 Identities=16% Similarity=0.178 Sum_probs=41.7
Q ss_pred CCeEEEcCCCCCC--CCceEEEcCchHHHhhhhccCC-CCCCcccccceEEeeccCCCccccCccceeeEE
Q psy9333 103 ASTWIMKPCGKSQ--GNGIFLINKLSKLKKWSRESKT-PFNPILVKESYVISKYIDNPLLIGGKKFDLRLY 170 (308)
Q Consensus 103 ~~~wI~KP~~~~~--G~GI~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~y 170 (308)
+...|+||..+++ |+|+.++++.+++....+.... ..-.......+++|+||. |.-|.+-+|
T Consensus 152 d~PVIVKp~~asG~~srG~f~a~s~eEl~~~a~~l~~~g~I~~~~~~~~iIQEyI~------G~ey~~d~F 216 (366)
T PRK13277 152 DRPVIVKLPEAKRRLERGFFTASSYEDFYEKSEELIKAGVIDREDLKNARIEEYVI------GAHFNFNYF 216 (366)
T ss_pred CccEEEEECCCCCccccCeEeeCCHHHHHHHHHhhhhcCcccccccccceeEeccC------CCEEEEEEE
Confidence 3568999999999 9999999999988766543211 000011235778999985 555555444
No 69
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=86.87 E-value=0.76 Score=44.07 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=42.3
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLv 173 (308)
+-.+|+||..++.+.||.++.+.+++....+... .....++||+||. |+ ++++-|+.
T Consensus 171 ~~PvvVKP~~ggsS~GV~~v~~~~el~~a~~~~~------~~~~~vlVEefI~------G~--E~sv~vi~ 227 (347)
T PRK14572 171 GFPQFLKPVEGGSSVSTYKITNAEQLMTLLALIF------ESDSKVMSQSFLS------GT--EVSCGVLE 227 (347)
T ss_pred CCCEEEecCCCCCCCCEEEECCHHHHHHHHHHHH------hcCCCEEEEcCcc------cE--EEEEEEEe
Confidence 4579999999999999999999988877654320 1235789999985 54 55666554
No 70
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=86.58 E-value=0.99 Score=40.07 Aligned_cols=148 Identities=11% Similarity=0.156 Sum_probs=78.4
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEeeecCcEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRPLKCY 182 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts~~Pl~vy 182 (308)
+-.+|+||..+....||..+++.+++...++..- ......+|++||. || ++.+-|+-.. ...+.
T Consensus 33 ~~P~~VKP~~~GsS~Gi~~v~~~~el~~ai~~~~------~~~~~vlVEefI~------G~--E~tv~vl~~~--~~~~~ 96 (203)
T PF07478_consen 33 GFPLFVKPASEGSSIGISKVHNEEELEEAIEKAF------KYDDDVLVEEFIS------GR--EFTVGVLGNG--EPRVL 96 (203)
T ss_dssp SSSEEEEESSTSTTTTEEEESSHHHHHHHHHHHT------TTHSEEEEEE--S------SE--EEEEEEEESS--STEEE
T ss_pred CCCEEEEECCCCccEEEEEcCCHHHHHHHHHHHh------hhcceEEEEeeec------cc--ceEEEEEecC--CcccC
Confidence 5578999999999999999999999887765431 1356899999984 55 4444444422 12221
Q ss_pred EEcCceEeecCCCCCCCcccccccccCCccccccccCCCcCCCCCCccchHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Q psy9333 183 LFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHS 262 (308)
Q Consensus 183 ~y~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~~~~~~~~~g~~wsl~~l~~~L~~~~g~~~~~~i~~~I~~ii~~t 262 (308)
.-+-+.+...-| +.+..+.+ ++. .... .......+.+.++|+++..++
T Consensus 97 --~~~ei~~~~~~~-----d~~~Ky~~-~~~-------------~~~~-----------~~pa~l~~~~~~~i~~~a~~a 144 (203)
T PF07478_consen 97 --PPVEIVFPSEFY-----DYEAKYQP-ADS-------------ETEY-----------IIPADLSEELQEKIKEIAKKA 144 (203)
T ss_dssp --EEEEEEESSSEE-----EHHHHHSG-CCS-------------CEEE-----------ESS-SS-HHHHHHHHHHHHHH
T ss_pred --ceEEEEcCCCce-----ehhheecc-CCC-------------ceEE-----------EecCCCCHHHHHHHHHHHHHH
Confidence 101111111111 11222211 000 0000 012234567888898888888
Q ss_pred HHHHHHH--HhhhcccccCCCCCccchhhhccccccccCC
Q psy9333 263 LKSVSYI--MAKKWSRESKTPFNPILVKESYVISKYIDNP 300 (308)
Q Consensus 263 ~~a~~p~--~~~~~~~~~~~~f~p~l~~~~~~~d~l~d~~ 300 (308)
+.+..-. ..-|.. .+..=+||++|.|-.|.+-..+.
T Consensus 145 ~~~lg~~~~~RiD~r--v~~~g~~~~lEiNt~PGlt~~S~ 182 (203)
T PF07478_consen 145 FKALGCRGYARIDFR--VDEDGKPYFLEINTIPGLTPTSL 182 (203)
T ss_dssp HHHTTTCSEEEEEEE--EETTTEEEEEEEESS-G-STTSH
T ss_pred HHHHcCCCceeEEEE--eccCCceEEEeccCcccccCCCH
Confidence 8766311 111221 23334689999999999876653
No 71
>KOG0238|consensus
Probab=85.96 E-value=0.31 Score=48.91 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=43.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCcc
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLL 159 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlL 159 (308)
+-.-++|++.|..|+|+++..+.+++....+..+..-....+....++-|||+||=-
T Consensus 148 gyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFGdd~~llEkfi~npRH 204 (670)
T KOG0238|consen 148 GYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFGDDGMLLEKFIDNPRH 204 (670)
T ss_pred CCcEEEEeccCCCCcceEeecChHHHHHHHHHHHHHHHhhcCcchhhHHHhccCCce
Confidence 456789999999999999999998887765543322233456788999999999953
No 72
>KOG0369|consensus
Probab=85.14 E-value=0.52 Score=48.83 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCcc
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLL 159 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlL 159 (308)
.|..+|.++| +-.-|+|.+.|..|||++++++.+++..-.+..-+......+.+...|.|+|++|--
T Consensus 174 ~EA~eF~k~y----G~PvI~KAAyGGGGRGmRvVr~~e~vee~f~Ra~SEA~aaFGnG~~FvEkF~ekPrH 240 (1176)
T KOG0369|consen 174 EEALEFVKEY----GLPVIIKAAYGGGGRGMRVVRSGEDVEEAFQRAYSEALAAFGNGTLFVEKFLEKPRH 240 (1176)
T ss_pred HHHHHHHHhc----CCcEEEeecccCCCcceEEeechhhHHHHHHHHHHHHHHhcCCceeeHHhhhcCcce
Confidence 5777898888 556799999999999999999998887543221000111235688899999998853
No 73
>KOG2157|consensus
Probab=83.92 E-value=0.54 Score=47.44 Aligned_cols=43 Identities=26% Similarity=0.111 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCccchhhhccccccccC---Cccc
Q psy9333 253 TNISWLIVHSLKSVSYIMAKKWSRESKTPFNPILVKESYVISKYIDN---PLLI 303 (308)
Q Consensus 253 ~~I~~ii~~t~~a~~p~~~~~~~~~~~~~f~p~l~~~~~~~d~l~d~---~~~~ 303 (308)
.+|..++...+.++.+....-. .+..|||+||.||+||+ ||||
T Consensus 350 ~~i~~~~~~iv~~v~~s~~~~~--------~~~n~FElyG~DfliD~~lkpwLi 395 (497)
T KOG2157|consen 350 LQIKPIITGIVLSVFASATTVP--------SLANCFELYGFDFLIDEALKPWLI 395 (497)
T ss_pred ccchhhhhhhhhhhhhhccccc--------cccchhhhhCcceeecCCCCeEEE
Confidence 3566677777777765444322 34589999999999999 7776
No 74
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=83.82 E-value=3.7 Score=45.43 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=54.0
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc-
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL- 158 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl- 158 (308)
|+++.+ +.++.++.++. +-.-|+||..+..|+|+.++.+.+++....+... .......++||+||.-.-
T Consensus 144 p~~~~v~s~~e~~~~~~~i----g~PvVVKP~~g~gg~Gv~iv~~~eeL~~a~~~~~----~~s~~~~vlvEe~I~G~~E 215 (1066)
T PRK05294 144 PRSGIAHSMEEALEVAEEI----GYPVIIRPSFTLGGTGGGIAYNEEELEEIVERGL----DLSPVTEVLIEESLLGWKE 215 (1066)
T ss_pred CCeeeeCCHHHHHHHHHHc----CCCeEEEcCCCCCCCCeEEECCHHHHHHHHHHHH----hhCCCCeEEEEEcccCceE
Confidence 454444 23444444333 3467999999999999999999998877654210 001235799999996431
Q ss_pred ----cccCccceeeEEEEEeeecCcE
Q psy9333 159 ----LIGGKKFDLRLYVLVTSFRPLK 180 (308)
Q Consensus 159 ----Li~grKFDlR~yvLvts~~Pl~ 180 (308)
.+.+..-.+..+..+...+|..
T Consensus 216 isv~v~rd~~g~~~~~~~~e~~dp~g 241 (1066)
T PRK05294 216 YEYEVMRDKNDNCIIVCSIENIDPMG 241 (1066)
T ss_pred EEEEEEEcCCCCEEEEeeeeeccccc
Confidence 1122222344455555555654
No 75
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=83.70 E-value=0.68 Score=48.90 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=52.9
Q ss_pred Ceeeccccchhh---HHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 79 DFIPITFILPAD---YNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 79 ~~~P~T~~lp~e---~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
..+|-|=-.+++ ..+|.+++ +-.-|+|-+.|.+|||++++++.+++.+..+..++......+....-+-|||+
T Consensus 135 Pvipgt~~~~~~~ee~~~fa~~~----gyPvmiKA~~GGGGRGMR~vr~~~~l~~~~~~AksEAkaAFG~~eVyvEk~ve 210 (1149)
T COG1038 135 PVIPGTDGPIETIEEALEFAEEY----GYPVMIKAAAGGGGRGMRVVRSEADLAEAFERAKSEAKAAFGNDEVYVEKLVE 210 (1149)
T ss_pred CccCCCCCCcccHHHHHHHHHhc----CCcEEEEEccCCCccceeeecCHHHHHHHHHHHHHHHHHhcCCCcEEhhhhhc
Confidence 446666555443 34444443 56778999999999999999999988876554332212234667888999999
Q ss_pred CCc
Q psy9333 156 NPL 158 (308)
Q Consensus 156 ~Pl 158 (308)
||-
T Consensus 211 ~pk 213 (1149)
T COG1038 211 NPK 213 (1149)
T ss_pred Ccc
Confidence 986
No 76
>PHA02117 glutathionylspermidine synthase domain-containing protein
Probab=83.20 E-value=1.9 Score=42.37 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=39.5
Q ss_pred eEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEE
Q psy9333 105 TWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 105 ~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvL 172 (308)
.|+.||.-|-.|.+|.++.....+. +.. .......+|.|+|+.-| -++|+-.=+.+|++
T Consensus 309 ~yV~KPi~gREG~nV~i~~~g~~~~---~~~-----g~y~~~~~IyQ~~~~Lp-~f~g~~~~iGsw~v 367 (397)
T PHA02117 309 KYVSKPLLSREGNNIHIFEYGGESE---DTD-----GNYAEEPRVVQQLIEWG-RFDGCYPMIGVWMV 367 (397)
T ss_pred CEEeccCCCcCCCCEEEEECCeEEe---ccC-----CCCCCCCeEEEEccCCc-ccCCcEEEEEEEEE
Confidence 5999999999999999997633221 110 12346899999999877 45665333333433
No 77
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=83.03 E-value=11 Score=36.81 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCC---CCCcccccceEEeeccCCCccccCccceeeEEEEEeeec
Q psy9333 101 NPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTP---FNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFR 177 (308)
Q Consensus 101 ~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts~~ 177 (308)
.+..--|+|.++|.=|-||..+.+.+++..+-+..... ......-...|||+-|..==.+++- ...
T Consensus 255 ~e~PfViVKADaGTYGMGImtv~~~~ev~~LNrK~RnKM~~~Keg~~V~~VIiQEGV~T~E~~~~a-----------vAE 323 (403)
T TIGR02049 255 HTQPYVIVKADAGTYGMGIMTATSGEEVLGLNRKERNKMAKVKEGLEVSEVIIQEGVYTFEMFNEA-----------VAE 323 (403)
T ss_pred CCCCeEEEEcCCCCCCceEEEecCHHHHHHhhhhhhhhcccccCCCccceEEEecCcceeeeeCCc-----------ccC
Confidence 45667899999999999999999999998876543211 2233455789999988532223332 123
Q ss_pred CcEEEEEcC----ceEeecCCCCCCCcccccccccCCccccc
Q psy9333 178 PLKCYLFKL----GFCRFCTVKYDKNITELDNMYVHLTNVSV 215 (308)
Q Consensus 178 Pl~vy~y~~----g~vR~a~~~Y~~~~~~~~~~~~HLTN~si 215 (308)
|+. |+-++ |+-|.-++.= ..+|++.+-||+.-.+.
T Consensus 324 PVV-Ymid~~vvggfYRvh~~Rg--~dENLNapG~~F~plaf 362 (403)
T TIGR02049 324 PVV-YMIGRTVTGGFYRVHTGRG--VDENLNAPGMHFVPLSF 362 (403)
T ss_pred ceE-EEECCEEeEEEEEecCCCC--CcccCCCCCCeeeeccc
Confidence 543 55443 5666665554 34577777888776654
No 78
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=82.22 E-value=0.61 Score=47.39 Aligned_cols=56 Identities=14% Similarity=0.296 Sum_probs=42.3
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
+-.-++|...|..|+|++++.+.+++....+..+..-....+....++-||+++|=
T Consensus 152 GyPVlIKAsaGGGGKGMRvv~~~~e~~e~l~sarrEA~asFGddrv~iEkyl~~PR 207 (645)
T COG4770 152 GYPVLIKASAGGGGKGMRVVETPEEFAEALESARREAKASFGDDRVFIEKYLDKPR 207 (645)
T ss_pred CCcEEEEeccCCCCCceEeecCHHHHHHHHHHHHHHHHhhcCCceEehhhhcCCCc
Confidence 45678899999999999999999888765543221112345678999999999984
No 79
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=80.74 E-value=3.5 Score=40.90 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=30.5
Q ss_pred CeEEEcCCCCCCCCceEEEcC----chHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 104 STWIMKPCGKSQGNGIFLINK----LSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~----~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
-..|+||..++.|+|+.++.+ .++......+.. ......|||+||+-
T Consensus 142 ~PvVVKP~~~sggkGV~v~~~~~~~~~ea~~~~~~~~------~~~~~viIEEfl~G 192 (435)
T PRK06395 142 KDVAVKPIGLTGGKGVKVTGEQLNSVDEAIRYAIEIL------DRDGVVLIEKKMTG 192 (435)
T ss_pred CCEEEEeCCCCCCCCeEEecCchhhHHHHHHHHHHHh------CCCCcEEEEeecCC
Confidence 357999999999999999943 233222211110 12357999999964
No 80
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=80.06 E-value=2.1 Score=41.53 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=42.4
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvL 172 (308)
+-..|+||..+..|.||.++.+.+++...++... ......+||+||+ || ++++-|+
T Consensus 171 g~PviVKP~~~GsS~Gv~~v~~~~el~~al~~a~------~~~~~vlVEefI~------Gr--Ei~v~Vl 226 (364)
T PRK14570 171 GYPVIVKPAVLGSSIGINVAYNENQIEKCIEEAF------KYDLTVVIEKFIE------AR--EIECSVI 226 (364)
T ss_pred CCCEEEEeCCCCCCCcEEEeCCHHHHHHHHHHHH------hCCCCEEEECCcC------CE--EEEEEEE
Confidence 4578999999888999999999988887655321 1235699999996 54 6777766
No 81
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=79.93 E-value=6.7 Score=43.39 Aligned_cols=51 Identities=14% Similarity=0.096 Sum_probs=37.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+-..|+||..+..|+|+.++.+.+++....+... .......++||+||.-+
T Consensus 162 gyPvIVKP~~g~gg~Gv~iv~~~eeL~~~~~~~~----~~s~~~~vlVEe~I~G~ 212 (1050)
T TIGR01369 162 GYPVIVRPAFTLGGTGGGIAYNREELKEIAERAL----SASPINQVLVEKSLAGW 212 (1050)
T ss_pred CCCeEEECCCCCCCCCeEEECCHHHHHHHHHHHH----hcCCCCcEEEEEcccCc
Confidence 3467999999999999999999998876543221 00112579999999754
No 82
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=75.23 E-value=6.3 Score=40.69 Aligned_cols=47 Identities=11% Similarity=0.069 Sum_probs=35.1
Q ss_pred CCeEEEcCCCCC-CCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKS-QGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-..|+||..++ .|+|+.++.+.+++....+... .....+++++||+
T Consensus 156 g~P~VvKP~~ggs~g~Gv~~v~~~~eL~~a~~~~~------~~~~~vlvEefI~ 203 (577)
T PLN02948 156 GYPLMLKSRRLAYDGRGNAVAKTEEDLSSAVAALG------GFERGLYAEKWAP 203 (577)
T ss_pred CCcEEEEeCCCCCCCCCeEEECCHHHHHHHHHHhh------CCCCcEEEEecCC
Confidence 446899998654 7999999999998877655321 1235789999995
No 83
>PRK06524 biotin carboxylase-like protein; Validated
Probab=74.97 E-value=4 Score=41.24 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=35.9
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-.-++||..++.|+|+.++.+.+++....+... .....+||+||.
T Consensus 181 GyPvVVKP~~GGSS~GV~~Vkn~eELe~a~~~~~-------~~~~viVEe~I~ 226 (493)
T PRK06524 181 GDDLVVQTPYGDSGSTTFFVRGQRDWDKYAGGIV-------GQPEIKVMKRIR 226 (493)
T ss_pred CCcEEEEECCCCCCcCEEEeCCHHHHHHHHHHhc-------CCCCEEEEeccC
Confidence 3457899999999999999999999887665321 124689999985
No 84
>PLN02735 carbamoyl-phosphate synthase
Probab=73.56 E-value=4.9 Score=44.69 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=37.8
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
+-..|+||..+..|+|+.++.+.+++....+.... .....+.+||+||+.
T Consensus 737 GyPvvVKP~~g~gG~G~~iV~~~eeL~~al~~a~~----~~~~~~vlVEefI~~ 786 (1102)
T PLN02735 737 GYPVVVRPSYVLGGRAMEIVYSDDKLKTYLETAVE----VDPERPVLVDKYLSD 786 (1102)
T ss_pred CCCeEEEeCCCCCCCcEEEECCHHHHHHHHHHHHH----hcCCCCEEEEEecCC
Confidence 44689999999999999999999998876543210 012357999999964
No 85
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=73.11 E-value=6 Score=43.86 Aligned_cols=67 Identities=16% Similarity=0.203 Sum_probs=44.5
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
|+++.+ ..+..++.+.. +-..|+||..+..|+|+.++++.+++....+.... ......++||+||.-
T Consensus 144 p~~~~v~s~ee~~~~~~~i----gyPvVVKP~~g~gG~Gv~iv~~~eEL~~a~~~~~~----~s~~~~vLVEe~I~G 212 (1068)
T PRK12815 144 PESEIVTSVEEALAFAEKI----GFPIIVRPAYTLGGTGGGIAENLEELEQLFKQGLQ----ASPIHQCLLEESIAG 212 (1068)
T ss_pred CCceeeCCHHHHHHHHHHc----CCCEEEEECcCCCCCceEEECCHHHHHHHHHHHHh----cCCCCeEEEEEccCC
Confidence 555554 23444444332 44679999999999999999999988776543210 012357999999964
No 86
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=72.50 E-value=20 Score=35.56 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=45.4
Q ss_pred ccccchhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 83 ITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 83 ~T~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
.+|.-+++..+|++++ +..|++||+..+.|+|+.+..+.++..+..++.-....-.......|+-+|++
T Consensus 122 ~~f~~~e~a~ayi~~~----g~piVVKadGLaaGKGV~V~~~~eeA~~a~~~~l~~~~fg~~g~~VVIEEfL~ 190 (428)
T COG0151 122 EVFTDPEEAKAYIDEK----GAPIVVKADGLAAGKGVIVAMTLEEAEAAVDEMLEGNAFGSAGARVVIEEFLD 190 (428)
T ss_pred cccCCHHHHHHHHHHc----CCCEEEecccccCCCCeEEcCCHHHHHHHHHHHHhhccccCCCCcEEEEeccc
Confidence 3455567777887766 45699999999999999999998777664432110000011224578888865
No 87
>PRK10507 bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional
Probab=65.20 E-value=11 Score=39.35 Aligned_cols=59 Identities=14% Similarity=0.279 Sum_probs=37.7
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEE
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLY 170 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~y 170 (308)
..|+.||.-|-.|.+|.|+..-..+.. +. ........+|.|+|+.-| ..+|...-+.+|
T Consensus 528 ~~yV~KPi~GREG~nV~i~~~~g~~~~--~~-----~g~y~~~~~IyQ~~~~LP-~f~~~~~~iGsw 586 (619)
T PRK10507 528 TGYAVKPIAGRCGSNIDLVSHQEEVLD--KT-----SGKFAEQKNIYQQLWCLP-KVDGKYIQVCTF 586 (619)
T ss_pred CCeEeccCCCcCCCCEEEEeCCCcEee--cc-----CCCCCCCCeEEEEeccCc-ccCCCEEEEEEE
Confidence 359999999999999999975222211 10 012356889999999876 345443333333
No 88
>PF08886 GshA: Glutamate-cysteine ligase; InterPro: IPR011718 This entry represents a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria []. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.; PDB: 3K1T_A.
Probab=62.52 E-value=9 Score=37.38 Aligned_cols=103 Identities=16% Similarity=0.198 Sum_probs=52.0
Q ss_pred CCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCC---CCCCcccccceEEeeccCCCccccCccceeeEEEEEeeec
Q psy9333 101 NPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKT---PFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFR 177 (308)
Q Consensus 101 ~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~---~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts~~ 177 (308)
....--|+|.++|.=|.||..+.+.+++..+-+.... .......-...|||+-|..=-.+++- | ..
T Consensus 258 ~e~PfV~VKAD~GTYGMGImtV~~~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~a---------v--AE 326 (404)
T PF08886_consen 258 KEKPFVFVKADAGTYGMGIMTVKSGDEVLGLNRKQRNKMSVIKEGLEVSEVIIQEGVYTFERFNDA---------V--AE 326 (404)
T ss_dssp -S---EEEEEE-GGG-EEEEEESSGGGGSS--HHHHHHHH-SSSSS---EEEEEE-----EEETTE---------E--EE
T ss_pred CCCceEEEEcCCCCCCceEEEecCHHHHHHHhHHHhhhhhhhcCCCccceeEEecCcchhhhhCCc---------c--cc
Confidence 3456788999999999999999999999765432110 01223345789999998654444542 1 22
Q ss_pred CcEEEEEcC----ceEeecCCCCCCCcccccccccCCccccccc
Q psy9333 178 PLKCYLFKL----GFCRFCTVKYDKNITELDNMYVHLTNVSVQK 217 (308)
Q Consensus 178 Pl~vy~y~~----g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk 217 (308)
|+ ||+-+. |+-|.-++.= ..+|++.+-||+.-.+...
T Consensus 327 PV-VYmid~~vvggfyRvh~~rg--~deNLNapGm~F~plaf~~ 367 (404)
T PF08886_consen 327 PV-VYMIDRYVVGGFYRVHTERG--VDENLNAPGMHFVPLAFEQ 367 (404)
T ss_dssp EE-EEEETTEEEEEEEEEES--S--TTTTTS--TT-EEEEE--S
T ss_pred ce-EEEECCEEEEEEEEecCCCC--CccCCCCCCCEeeeccccc
Confidence 53 355443 5667766654 3467888888877666544
No 89
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=62.06 E-value=13 Score=35.41 Aligned_cols=65 Identities=15% Similarity=0.272 Sum_probs=36.6
Q ss_pred eeccccchhhHHHHHHHHHhCCCCeEEEcCCCCC------CCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeecc
Q psy9333 81 IPITFILPADYNMFVEEYRKNPASTWIMKPCGKS------QGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYI 154 (308)
Q Consensus 81 ~P~T~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~------~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI 154 (308)
+|+||.+..+.+....+. .-.-|+||.+|. |.+-+.. .+-++++...... -........|||++|
T Consensus 129 ~P~Ty~v~S~~d~~~~el----~FPvILKP~mgg~~~~~araKa~~a-~d~ee~k~a~~~a----~eeigpDnvvvQe~I 199 (415)
T COG3919 129 YPKTYLVNSEIDTLVDEL----TFPVILKPGMGGSVHFEARAKAFTA-ADNEEMKLALHRA----YEEIGPDNVVVQEFI 199 (415)
T ss_pred CcceEEecchhhhhhhhe----eeeEEecCCCCCcceeehhhheeec-cCHHHHHHHHHHH----HHhcCCCceEEEEec
Confidence 799999987776666554 123699997643 1222222 2334443321100 011356889999998
No 90
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=61.98 E-value=15 Score=37.19 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.2
Q ss_pred eEEEcCCCCCCCCceEEEcCch
Q psy9333 105 TWIMKPCGKSQGNGIFLINKLS 126 (308)
Q Consensus 105 ~wI~KP~~~~~G~GI~l~~~~~ 126 (308)
..|+||..++.|+|+.++.+.+
T Consensus 146 PvVVKP~~~aggkGV~iv~~~~ 167 (486)
T PRK05784 146 SVAIKPARQAGGKGVKVIADLQ 167 (486)
T ss_pred CEEEeeCCCCCCCCEEEECChh
Confidence 6899999999999999999865
No 91
>PLN02735 carbamoyl-phosphate synthase
Probab=60.67 E-value=15 Score=40.88 Aligned_cols=49 Identities=10% Similarity=0.128 Sum_probs=37.2
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
-.-|+||..+..|+|+.++.+.+++....+... ........+|++||.-
T Consensus 181 yPvVVKP~~~~GG~Gv~iv~n~eEL~~a~~~a~----~~s~~~~VLVEe~I~G 229 (1102)
T PLN02735 181 FPLIIRPAFTLGGTGGGIAYNKEEFETICKAGL----AASITSQVLVEKSLLG 229 (1102)
T ss_pred CCEEEEeCCCCCCCceEEECCHHHHHHHHHHHH----hcCCCCeEEEEEecCC
Confidence 357999999999999999999999887664321 0112457899999974
No 92
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=60.41 E-value=5.8 Score=37.86 Aligned_cols=53 Identities=15% Similarity=0.125 Sum_probs=35.7
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCC-CCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKT-PFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~VvQkYI~ 155 (308)
+..-|||....-+|+|-++.++.++.....+.-.. ..-....-....+|+||-
T Consensus 150 dr~VIVK~pgAkggRGyFiA~s~eef~ek~e~l~~~gvi~~edlkna~IeEYv~ 203 (361)
T COG1759 150 DRPVIVKLPGAKGGRGYFIASSPEEFYEKAERLLKRGVITEEDLKNARIEEYVV 203 (361)
T ss_pred CCceEEecCCccCCceEEEEcCHHHHHHHHHHHHHcCCcchhhhhhceeeEEee
Confidence 56789999988889999999999877654432110 000011235788999984
No 93
>COG1821 Predicted ATP-utilizing enzyme (ATP-grasp superfamily) [General function prediction only]
Probab=54.20 E-value=6.5 Score=36.51 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.4
Q ss_pred CCeEEEcCCCCCCCCceEEEcC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINK 124 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~ 124 (308)
...+|+||..+++|.||....+
T Consensus 138 ~~k~ViKp~dgCgge~i~~~~~ 159 (307)
T COG1821 138 PKKYVIKPADGCGGEGILFGRD 159 (307)
T ss_pred CceEEecccccCCcceeeccCC
Confidence 5789999999999999987765
No 94
>PF03133 TTL: Tubulin-tyrosine ligase family; InterPro: IPR004344 Tubulins and microtubules are subjected to several post-translational modifications of which the reversible detyrosination/tyrosination of the carboxy-terminal end of most alpha-tubulins has been extensively analysed. This modification cycle involves a specific carboxypeptidase and the activity of the tubulin-tyrosine ligase (TTL) []. Tubulin-tyrosine ligase (TTL) catalyses the ATP-dependent post-translational addition of a tyrosine to the carboxy terminal end of detyrosinated alpha-tubulin. The true physiological function of TTL has so far not been established. In normally cycling cells, the tyrosinated form of tubulin predominates. However, in breast cancer cells, the detyrosinated form frequently predominates, with a correlation to tumour aggressiveness []. 3-nitrotyrosine has been shown to be incorporated, by TTL, into the carboxy terminal end of detyrosinated alpha-tubulin. This reaction is not reversible by the carboxypeptidase enzyme. Cells cultured in 3-nitrotyrosine rich medium showed evidence of altered microtubule structure and function, including altered cell morphology, epithelial barrier dysfunction, and apoptosis [].; GO: 0004835 tubulin-tyrosine ligase activity, 0006464 protein modification process; PDB: 3TII_A 3TIN_A 3TIG_A.
Probab=53.03 E-value=3.8 Score=37.98 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=17.0
Q ss_pred CccchhhhccccccccC---Cccc
Q psy9333 283 NPILVKESYVISKYIDN---PLLI 303 (308)
Q Consensus 283 ~p~l~~~~~~~d~l~d~---~~~~ 303 (308)
....+||+||.||++|+ |+||
T Consensus 231 ~~~~~Fel~G~DfmlD~~~kpwLL 254 (292)
T PF03133_consen 231 PRPNCFELFGFDFMLDEDLKPWLL 254 (292)
T ss_dssp SSSEE-EEEEEEEEEBTTS-EEEE
T ss_pred ccccccceeeeEEEecCCCeEEEe
Confidence 34599999999999999 7776
No 95
>COG0754 Gsp Glutathionylspermidine synthase [Amino acid transport and metabolism]
Probab=52.95 E-value=9.8 Score=36.86 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=34.1
Q ss_pred eEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 105 TWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 105 ~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
.|+.||.-|-.|.+|.++.+..+...... ...+..++|.|+|.+-|
T Consensus 298 ~yv~KPl~gREGaNv~i~~~~~~~~~~~~-------G~Yg~eg~IyQe~~~Lp 343 (387)
T COG0754 298 SYVRKPLFGREGANVSIFEDAGKVLDKAD-------GPYGEEGMIYQEFYPLP 343 (387)
T ss_pred hhhccccccccCCCeeEEecCCceeecCC-------CCccccchhhhhhccCc
Confidence 38999999999999999977444332111 12467899999999766
No 96
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=49.53 E-value=24 Score=37.79 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=35.7
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-.-|+||..+..+.||.++.+.+++.+.++... ......+|++||.
T Consensus 610 g~P~iVKP~~~GsS~Gv~~v~~~~el~~a~~~a~------~~~~~vlVEe~i~ 656 (809)
T PRK14573 610 SFPMFVKTAHLGSSIGVFEVHNVEELRDKISEAF------LYDTDVFVEESRL 656 (809)
T ss_pred CCCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHH------hcCCcEEEEeccC
Confidence 3467999999888999999999998887665321 1235689999874
No 97
>PF04174 CP_ATPgrasp_1: A circularly permuted ATPgrasp ; InterPro: IPR007302 This is a domain of unknown function. It sometimes occurs in combination with IPR007296 from INTERPRO) and (IPR007297 from INTERPRO).; PDB: 3N6X_A.
Probab=47.52 E-value=16 Score=35.07 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=36.1
Q ss_pred CceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccc-hhhHHHHHHHHHhCCCCeE
Q psy9333 28 NQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFIL-PADYNMFVEEYRKNPASTW 106 (308)
Q Consensus 28 ~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~l-p~e~~~f~~~~~~~~~~~w 106 (308)
..++ +-||+..+..|..++-. -++.+.+- |. . ....-+|.+|-- |.+++..++.. ..|
T Consensus 232 V~ia-Na~G~gv~edkal~~~l-p~~~r~~L--ge-----------e-llL~~VpT~~cg~~~~~~~Vl~~l-----~~l 290 (330)
T PF04174_consen 232 VVIA-NAPGSGVAEDKALYAFL-PRMIRYYL--GE-----------E-LLLPNVPTWWCGDPEDREYVLANL-----DEL 290 (330)
T ss_dssp -EEE-S-TTTHHHHSTTTGGGH-HHHHHHHH---S--------------SSEE---EETTSHHHHHHHHHSG-----GGE
T ss_pred EEEE-CCCccchhcchhHHHHh-HHHHHHHc--CC-----------C-cccCCCCcEeCCCHHHHHHHHhch-----hhc
Confidence 3455 77899999999655433 33333221 10 0 011235555544 56766666544 368
Q ss_pred EEcCCCCCCCCceEEEcCch
Q psy9333 107 IMKPCGKSQGNGIFLINKLS 126 (308)
Q Consensus 107 I~KP~~~~~G~GI~l~~~~~ 126 (308)
++||..++.|.|+.+-.+.+
T Consensus 291 vvKp~~g~gg~~~~~G~~~s 310 (330)
T PF04174_consen 291 VVKPADGYGGKGVYIGPKLS 310 (330)
T ss_dssp EEEE--------EEEGGG--
T ss_pred EEEecCCCCCCcceeCCcCC
Confidence 99999999999998876655
No 98
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=42.65 E-value=73 Score=28.29 Aligned_cols=51 Identities=16% Similarity=0.281 Sum_probs=34.1
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCC--CCCCC--ceEEEcCchHHHhhhhc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCG--KSQGN--GIFLINKLSKLKKWSRE 134 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~--~~~G~--GI~l~~~~~~i~~~~~~ 134 (308)
+|+.... |+|........ ....|++||-. |.||+ ||++..++++...+.++
T Consensus 18 vp~g~~a~s~eea~~~~~~l---~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~ 74 (202)
T PF08442_consen 18 VPRGVVATSPEEAREAAKEL---GGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKE 74 (202)
T ss_dssp --SEEEESSHHHHHHHHHHH---TTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHT
T ss_pred CCCeeecCCHHHHHHHHHHh---CCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHH
Confidence 5666655 67776666555 34589999965 33433 89999999998887654
No 99
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=41.83 E-value=1.1e+02 Score=29.59 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=51.2
Q ss_pred ccchhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCcc
Q psy9333 85 FILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKK 164 (308)
Q Consensus 85 ~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grK 164 (308)
|..-..+++|.+...+ -+-.=++||.+++-|+|-.++++.+++...-+... ..........||-.+| |
T Consensus 132 Y~fa~s~~e~~~a~~~-iGfPcvvKPvMSSSGkGqsvv~~~e~ve~AW~~A~--~g~R~~~~RVIVE~fv---------~ 199 (394)
T COG0027 132 YRFADSLEELRAAVEK-IGFPCVVKPVMSSSGKGQSVVRSPEDVEKAWEYAQ--QGGRGGSGRVIVEEFV---------K 199 (394)
T ss_pred ccccccHHHHHHHHHH-cCCCeecccccccCCCCceeecCHHHHHHHHHHHH--hcCCCCCCcEEEEEEe---------c
Confidence 3333445555544433 24556999999999999999999999876332111 0112355788899898 5
Q ss_pred ceeeEEEEEe
Q psy9333 165 FDLRLYVLVT 174 (308)
Q Consensus 165 FDlR~yvLvt 174 (308)
||+-+=+|..
T Consensus 200 fd~EiTlLtv 209 (394)
T COG0027 200 FDFEITLLTV 209 (394)
T ss_pred ceEEEEEEEE
Confidence 8888766643
No 100
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=32.37 E-value=2.3e+02 Score=26.96 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEE
Q psy9333 92 NMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYV 171 (308)
Q Consensus 92 ~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yv 171 (308)
+..++++....+-..++||+...-.-|+..++...++....+.. ...++..++++++. ||++.+.+.=
T Consensus 131 ~~~~e~~~~~l~~p~~Vkp~~~gSSvg~~~v~~~~d~~~~~e~a------~~~d~~vl~e~~~~------~rei~v~vl~ 198 (317)
T COG1181 131 SVIVEEVEEGLGFPLFVKPAREGSSVGRSPVNVEGDLQSALELA------FKYDRDVLREQGIT------GREIEVGVLG 198 (317)
T ss_pred hHHHHHhhcccCCCEEEEcCCccceeeEEEeeeccchHHHHHHH------HHhCCceeeccCCC------cceEEEEecC
Confidence 34445555555678899999877777998888877766533211 11356788899885 5555443311
Q ss_pred E---EeeecC-------cEEEEEcCceEeecCCCCCCCcccccccccCCccccccccCCCcCCCCCCccchHHHHHHHHH
Q psy9333 172 L---VTSFRP-------LKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADYNNIHGGKMNLQNLRLYLES 241 (308)
Q Consensus 172 L---vts~~P-------l~vy~y~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~~~~~~~~~g~~wsl~~l~~~L~~ 241 (308)
- .....+ -.+|.|. .+| ++ ..|....
T Consensus 199 ~~~~~~~l~~~eI~~~~~~fydye--------~Ky------~~--------------------~gg~~~~---------- 234 (317)
T COG1181 199 NDYEEQALPLGEIPPKGEEFYDYE--------AKY------LS--------------------TGGAQYD---------- 234 (317)
T ss_pred CcccceecCceEEecCCCeEEeee--------ccc------cC--------------------CCCceee----------
Confidence 1 000000 1222222 111 10 0000000
Q ss_pred ccCCCcHHHHHHHHHHHHHHHHHHHH-HHHh-hhcccccCCCCCccchhhhccccccccCCc
Q psy9333 242 TRGKDITNKLFTNISWLIVHSLKSVS-YIMA-KKWSRESKTPFNPILVKESYVISKYIDNPL 301 (308)
Q Consensus 242 ~~g~~~~~~i~~~I~~ii~~t~~a~~-p~~~-~~~~~~~~~~f~p~l~~~~~~~d~l~d~~~ 301 (308)
-....++.+.++|+++..++.++.- ..+. .|..- .+..=+++++|.|..|.|...|.|
T Consensus 235 -~pa~lt~~~~~~i~~lA~~a~~alg~~g~~rvDf~~-~~~~g~~~l~EvNt~PG~t~~sl~ 294 (317)
T COG1181 235 -IPAGLTDEIHEEIKELALRAYKALGCLGLARVDFFV-DDDEGEFVLLEVNTNPGMTAMSLF 294 (317)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEEE-ECCCCCEEEEEEeCCCCCcccccc
Confidence 0123578899999999999888874 2222 22211 121346799999999999887744
No 101
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=29.96 E-value=1.2e+02 Score=29.35 Aligned_cols=65 Identities=9% Similarity=0.066 Sum_probs=37.4
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCC--CCCCCC--ceEEEcCchHHHhhhhccCC-CCC------CcccccceEEeeccC
Q psy9333 88 PADYNMFVEEYRKNPASTWIMKPC--GKSQGN--GIFLINKLSKLKKWSRESKT-PFN------PILVKESYVISKYID 155 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~KP~--~~~~G~--GI~l~~~~~~i~~~~~~~~~-~~~------~~~~~~~~VvQkYI~ 155 (308)
+.|..+....+ ....+++||. .+.+|. |+.+..+.+++.+..++.-. ... .......++||+++.
T Consensus 28 ~~ea~~~~~~i---g~~PvVvK~~~~~ggkg~~GGV~~~~~~~e~~~a~~~l~~~~~~~~~~~~~g~~~~~vlVEe~v~ 103 (386)
T TIGR01016 28 VEEAEEIAAKL---GAGPVVVKAQVHAGGRGKAGGVKVAKSKEEARAAAEKLLGKELVTNQTDPLGQPVNKILIEEATD 103 (386)
T ss_pred HHHHHHHHHHh---CCCcEEEEecccCCCCccCceEEEeCCHHHHHHHHHHHhccceeecccCCCCCEeeEEEEEECcc
Confidence 45555555544 1146899997 334554 89999888887765433211 000 011124689999984
No 102
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=29.61 E-value=71 Score=20.23 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=13.1
Q ss_pred CccchHHHHHHHHHc
Q psy9333 228 GKMNLQNLRLYLEST 242 (308)
Q Consensus 228 ~~wsl~~l~~~L~~~ 242 (308)
+.||-++|++||.+.
T Consensus 2 dtWs~~~L~~wL~~~ 16 (38)
T PF10281_consen 2 DTWSDSDLKSWLKSH 16 (38)
T ss_pred CCCCHHHHHHHHHHc
Confidence 369999999999984
No 103
>PF02750 Synapsin_C: Synapsin, ATP binding domain; InterPro: IPR020898 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represent the ATP-grasp fold found in synapsins, which is responsible for Ca dependent ATP binding. ; PDB: 1PX2_A 1PK8_F 1AUV_B 1AUX_A 2P0A_A 1I7N_A 1I7L_A.
Probab=26.83 E-value=1.7e+02 Score=26.16 Aligned_cols=102 Identities=15% Similarity=0.263 Sum_probs=54.4
Q ss_pred cccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccchhhHHHHHHHHHhCCCCeEEEcCCCCCCCCc
Q psy9333 39 ELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNG 118 (308)
Q Consensus 39 ~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~G 118 (308)
.++.|--+...|.+.++.+..+ .| ..++.||.- .-. +++ ..+.-..++|-+..++|-|
T Consensus 8 nf~dKpWvF~qLi~i~~~lG~e-------------~F---PLieQt~yp-nh~-em~----s~~~fPvVvKvG~~h~G~G 65 (203)
T PF02750_consen 8 NFCDKPWVFAQLIKIQKRLGPE-------------KF---PLIEQTYYP-NHR-EML----SAPRFPVVVKVGHAHAGMG 65 (203)
T ss_dssp HTTSHHHHHHHHHHHHHHHHTT-------------TS----B---EEES-SGG-GGC----S-SSSSEEEEESS-STTTT
T ss_pred hhcCCcHHHHHHHHHHHHhCCc-------------cc---ccceeeecC-Chh-hhc----cCCCCCEEEEEccccCcee
Confidence 4567777777777777777532 23 456666553 111 111 2255678999999999999
Q ss_pred eEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEee
Q psy9333 119 IFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTS 175 (308)
Q Consensus 119 I~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts 175 (308)
-..+.+..+..++..-- .....-..+-.|| ..|+|||+--+-..
T Consensus 66 Kvkv~n~~~~qDi~sll------~~~~~Y~T~EPfI-------d~kyDirvqkIG~~ 109 (203)
T PF02750_consen 66 KVKVDNQQDFQDIASLL------AITKDYATTEPFI-------DAKYDIRVQKIGNN 109 (203)
T ss_dssp EEEE-SHHHHHHHHHHH------HHHTS-EEEEE----------EEEEEEEEEETTE
T ss_pred EEEEccHHHHHHHHHHH------HhcCceEEeeccc-------cceeEEEEEEEcCe
Confidence 99999887666532110 0011222333344 46899998555444
No 104
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=26.78 E-value=41 Score=32.51 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=22.9
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
.+.|+||..|++|- +.+..--+++ ....+|.|+||+
T Consensus 150 kt~IlKPv~GaGG~-~el~~~~Ee~---------------~~~~~i~Qefi~ 185 (389)
T COG2232 150 KTLILKPVSGAGGL-VELVKFDEED---------------PPPGFIFQEFIE 185 (389)
T ss_pred eeeEEeeccCCCce-eeeccccccc---------------CCcceehhhhcC
Confidence 46899999887774 2222211111 137899999986
No 105
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=23.28 E-value=84 Score=26.88 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=15.9
Q ss_pred cceeeEEEEEeeecCcEEEEEcCc
Q psy9333 164 KFDLRLYVLVTSFRPLKCYLFKLG 187 (308)
Q Consensus 164 KFDlR~yvLvts~~Pl~vy~y~~g 187 (308)
-=|+++.|+++. -|.+|++|++=
T Consensus 117 ~eDlqvlViiSr-pPvkvf~y~dw 139 (167)
T PF02041_consen 117 HEDLQVLVIISR-PPVKVFIYDDW 139 (167)
T ss_dssp SS-EEEEEEEES-SS--EEEESST
T ss_pred CcceEEEEEecC-CCeEEEEeccc
Confidence 469999988865 59999999873
No 106
>PF13973 DUF4222: Domain of unknown function (DUF4222)
Probab=20.16 E-value=1.2e+02 Score=21.09 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=23.0
Q ss_pred EEEEEeeecCcEEEEEcCceEeecCCCC
Q psy9333 169 LYVLVTSFRPLKCYLFKLGFCRFCTVKY 196 (308)
Q Consensus 169 ~yvLvts~~Pl~vy~y~~g~vR~a~~~Y 196 (308)
.-|.|+|+++-+|...++||-+-|..|-
T Consensus 15 ~~V~I~~~~~~rV~y~R~GY~~~c~~p~ 42 (53)
T PF13973_consen 15 YPVTIISVDFNRVTYRRDGYEHPCVMPV 42 (53)
T ss_pred CEEEEEEEECCEEEEEECCCCccccCCH
Confidence 4577888888899999999888887764
Done!