Query psy9333
Match_columns 308
No_of_seqs 165 out of 1147
Neff 7.0
Searched_HMMs 29240
Date Sat Aug 17 00:39:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 100.0 5.9E-58 2E-62 438.2 16.0 239 26-295 60-341 (380)
2 1gsa_A Glutathione synthetase; 97.3 0.00043 1.5E-08 62.6 7.6 78 80-172 134-214 (316)
3 1i7n_A Synapsin II; synapse, p 96.8 0.00094 3.2E-08 62.0 4.4 60 103-175 152-211 (309)
4 3n6x_A Putative glutathionylsp 96.7 0.0015 5E-08 64.0 5.4 138 27-195 306-453 (474)
5 2p0a_A Synapsin-3, synapsin II 96.7 0.0013 4.4E-08 62.0 4.4 60 103-175 169-228 (344)
6 2cqy_A Propionyl-COA carboxyla 96.6 0.0039 1.4E-07 47.3 6.1 73 81-157 23-99 (108)
7 1uc8_A LYSX, lysine biosynthes 96.6 0.00089 3E-08 59.5 2.6 80 81-172 103-184 (280)
8 1pk8_A RAT synapsin I; ATP bin 96.5 0.0018 6.2E-08 62.4 4.5 60 103-175 264-323 (422)
9 1iow_A DD-ligase, DDLB, D-ALA\ 96.3 0.0058 2E-07 55.0 6.6 56 103-172 138-193 (306)
10 1z2n_X Inositol 1,3,4-trisphos 96.0 0.0083 2.8E-07 54.7 5.9 71 81-172 113-188 (324)
11 4dim_A Phosphoribosylglycinami 95.9 0.0061 2.1E-07 57.5 4.4 68 81-156 124-193 (403)
12 2pn1_A Carbamoylphosphate synt 95.6 0.0098 3.3E-07 54.3 4.8 63 81-155 129-191 (331)
13 2q7d_A Inositol-tetrakisphosph 95.6 0.019 6.7E-07 53.8 6.9 108 28-173 102-215 (346)
14 2ip4_A PURD, phosphoribosylami 95.5 0.043 1.5E-06 52.0 8.7 76 82-173 117-194 (417)
15 2yw2_A Phosphoribosylamine--gl 95.4 0.034 1.2E-06 52.8 7.8 70 82-155 118-189 (424)
16 4eg0_A D-alanine--D-alanine li 95.4 0.026 9.1E-07 51.5 6.6 80 81-173 122-203 (317)
17 2i87_A D-alanine-D-alanine lig 95.2 0.027 9.4E-07 52.5 6.2 58 103-174 171-228 (364)
18 3ouz_A Biotin carboxylase; str 95.0 0.04 1.4E-06 52.8 7.1 66 88-157 145-210 (446)
19 2xcl_A Phosphoribosylamine--gl 95.0 0.039 1.3E-06 52.3 6.8 80 82-173 118-199 (422)
20 3r5x_A D-alanine--D-alanine li 94.8 0.017 5.9E-07 52.1 3.6 56 103-172 133-188 (307)
21 3ln6_A Glutathione biosynthesi 94.8 0.022 7.7E-07 58.8 4.8 76 81-173 499-579 (750)
22 2yrx_A Phosphoribosylglycinami 94.5 0.041 1.4E-06 52.8 5.7 80 82-173 139-220 (451)
23 1ulz_A Pyruvate carboxylase N- 94.5 0.021 7E-07 54.8 3.4 66 88-157 140-205 (451)
24 3q2o_A Phosphoribosylaminoimid 94.4 0.17 5.7E-06 47.5 9.7 97 81-196 127-231 (389)
25 1kjq_A GART 2, phosphoribosylg 94.4 0.045 1.5E-06 51.2 5.6 81 81-174 128-210 (391)
26 2qk4_A Trifunctional purine bi 94.3 0.058 2E-06 51.7 6.3 73 89-173 153-226 (452)
27 3lp8_A Phosphoribosylamine-gly 94.3 0.044 1.5E-06 52.8 5.4 71 81-155 138-210 (442)
28 3k5i_A Phosphoribosyl-aminoimi 94.2 0.21 7.2E-06 47.3 9.9 89 89-196 150-243 (403)
29 3aw8_A PURK, phosphoribosylami 94.2 0.038 1.3E-06 51.4 4.5 56 103-173 131-187 (369)
30 2dwc_A PH0318, 433AA long hypo 94.1 0.056 1.9E-06 51.4 5.7 68 82-155 137-206 (433)
31 2dzd_A Pyruvate carboxylase; b 94.1 0.029 9.9E-07 54.0 3.7 66 88-157 146-211 (461)
32 1e4e_A Vancomycin/teicoplanin 94.0 0.062 2.1E-06 49.6 5.6 59 103-175 165-223 (343)
33 2w70_A Biotin carboxylase; lig 93.9 0.082 2.8E-06 50.5 6.5 66 88-157 141-207 (449)
34 2vpq_A Acetyl-COA carboxylase; 93.9 0.085 2.9E-06 50.5 6.5 66 88-157 140-205 (451)
35 3mjf_A Phosphoribosylamine--gl 93.8 0.042 1.4E-06 52.7 4.1 81 82-174 123-205 (431)
36 3orq_A N5-carboxyaminoimidazol 93.7 0.064 2.2E-06 50.4 5.1 92 82-192 126-225 (377)
37 1ehi_A LMDDL2, D-alanine:D-lac 93.3 0.11 3.6E-06 48.9 6.0 66 91-174 166-232 (377)
38 2r85_A PURP protein PF1517; AT 93.2 0.08 2.7E-06 48.0 4.8 51 104-155 127-177 (334)
39 3se7_A VANA; alpha-beta struct 93.1 0.12 4.1E-06 47.8 5.9 57 104-174 166-222 (346)
40 3ln7_A Glutathione biosynthesi 92.9 0.088 3E-06 54.4 4.9 56 103-172 525-584 (757)
41 3e5n_A D-alanine-D-alanine lig 92.8 0.11 3.9E-06 49.0 5.3 75 81-173 174-254 (386)
42 4fu0_A D-alanine--D-alanine li 92.8 0.18 6.1E-06 46.9 6.6 47 103-155 177-223 (357)
43 2fb9_A D-alanine:D-alanine lig 92.7 0.11 3.8E-06 47.5 5.1 57 104-173 151-207 (322)
44 3k3p_A D-alanine--D-alanine li 92.3 0.11 3.6E-06 49.3 4.4 57 103-173 201-257 (383)
45 3ax6_A Phosphoribosylaminoimid 92.1 0.11 3.6E-06 48.5 4.1 53 103-174 132-185 (380)
46 3u9t_A MCC alpha, methylcroton 92.0 0.057 1.9E-06 55.1 2.3 66 88-157 167-232 (675)
47 3vmm_A Alanine-anticapsin liga 92.0 0.16 5.3E-06 49.5 5.3 73 81-157 154-234 (474)
48 3i12_A D-alanine-D-alanine lig 92.0 0.13 4.3E-06 48.1 4.4 67 90-174 170-236 (364)
49 2z04_A Phosphoribosylaminoimid 91.8 0.065 2.2E-06 49.6 2.2 76 81-174 107-184 (365)
50 3t7a_A Inositol pyrophosphate 91.7 0.12 4.1E-06 47.9 3.7 116 24-173 79-217 (330)
51 1vkz_A Phosphoribosylamine--gl 91.6 0.11 3.8E-06 49.2 3.7 53 103-155 141-193 (412)
52 4e4t_A Phosphoribosylaminoimid 91.2 0.18 6.1E-06 48.2 4.6 43 105-155 173-216 (419)
53 1w96_A ACC, acetyl-coenzyme A 90.8 0.3 1E-05 48.3 6.0 60 89-156 224-283 (554)
54 3glk_A Acetyl-COA carboxylase 90.8 0.19 6.5E-06 49.8 4.5 60 89-156 218-277 (540)
55 3jrx_A Acetyl-COA carboxylase 90.7 0.33 1.1E-05 48.7 6.2 61 89-157 234-294 (587)
56 2pvp_A D-alanine-D-alanine lig 90.6 0.25 8.6E-06 46.3 5.0 47 103-155 185-231 (367)
57 1a9x_A Carbamoyl phosphate syn 90.5 0.3 1E-05 52.3 6.1 68 82-157 690-759 (1073)
58 3n6r_A Propionyl-COA carboxyla 90.4 0.062 2.1E-06 54.9 0.6 54 104-157 153-206 (681)
59 3lwb_A D-alanine--D-alanine li 90.3 0.22 7.6E-06 46.8 4.3 58 103-174 188-245 (373)
60 3tqt_A D-alanine--D-alanine li 90.1 0.28 9.5E-06 46.2 4.9 58 103-174 179-237 (372)
61 2io8_A Bifunctional glutathion 89.3 0.25 8.4E-06 49.9 4.0 47 105-158 529-575 (619)
62 3vot_A L-amino acid ligase, BL 88.5 0.26 8.8E-06 46.7 3.3 52 104-155 146-202 (425)
63 3hbl_A Pyruvate carboxylase; T 87.5 0.28 9.5E-06 53.0 3.2 54 104-157 156-209 (1150)
64 3df7_A Putative ATP-grAsp supe 86.3 0.38 1.3E-05 43.7 3.0 44 103-173 133-176 (305)
65 1a9x_A Carbamoyl phosphate syn 85.8 0.65 2.2E-05 49.7 4.9 69 81-157 143-213 (1073)
66 3eth_A Phosphoribosylaminoimid 85.4 1.2 4.3E-05 41.4 6.1 52 88-155 103-157 (355)
67 2pbz_A Hypothetical protein; N 85.2 0.2 6.8E-06 46.4 0.5 43 103-155 125-167 (320)
68 2qf7_A Pyruvate carboxylase pr 85.1 0.19 6.4E-06 54.4 0.3 55 103-157 171-225 (1165)
69 2vob_A Trypanothione synthetas 84.7 0.62 2.1E-05 47.2 3.9 50 105-162 544-593 (652)
70 4ffl_A PYLC; amino acid, biosy 84.7 0.63 2.2E-05 42.9 3.7 39 104-155 126-164 (363)
71 2r7k_A 5-formaminoimidazole-4- 81.8 0.77 2.6E-05 43.1 3.1 52 104-155 151-203 (361)
72 3va7_A KLLA0E08119P; carboxyla 76.1 0.57 2E-05 50.9 0.2 53 104-156 181-233 (1236)
73 1wr2_A Hypothetical protein PH 72.6 1.8 6.3E-05 37.5 2.6 71 81-155 36-117 (238)
74 3k1t_A Glutamate--cysteine lig 69.9 6.1 0.00021 37.5 5.5 101 101-215 275-382 (432)
75 3ufx_B Succinyl-COA synthetase 60.1 12 0.0004 35.4 5.6 71 81-155 19-95 (397)
76 2fp4_B Succinyl-COA ligase [GD 49.3 20 0.00069 33.8 5.3 64 88-155 28-110 (395)
77 2nu8_B SCS-beta, succinyl-COA 48.1 24 0.00081 33.2 5.5 64 88-155 28-103 (388)
78 3tig_A TTL protein; ATP-grAsp, 41.5 15 0.00052 34.6 3.0 32 7-38 30-62 (380)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=100.00 E-value=5.9e-58 Score=438.25 Aligned_cols=239 Identities=26% Similarity=0.460 Sum_probs=173.5
Q ss_pred CCCceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccc-hh---------------
Q psy9333 26 NDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFIL-PA--------------- 89 (308)
Q Consensus 26 ~~~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~l-p~--------------- 89 (308)
..+|+||||||+.+||||+.|+++|++++ ... .. .+|+|+||.| |.
T Consensus 60 ~~~Q~vNhfPg~~~l~rKd~L~~nl~~~~-~~~--------------~~---~~f~P~ty~L~P~~~~~p~~~~~~~~~~ 121 (380)
T 3tig_A 60 GLVQLVNYYRGADKLCRKASLVKLIKTSP-ELT--------------ET---CTWFPESYVIYPTNEKTPAMRARNGLPD 121 (380)
T ss_dssp TCCCEESCCTTTHHHHSHHHHHHHHHHCH-HHH--------------TT---CTTSCCEEECCC----------------
T ss_pred CcceEEeecCCcccccccHHHHHHHHHhh-hcc--------------cc---cCcCCcceeeCccccccccccccccccc
Confidence 66899999999999999999999999853 322 22 3899999999 75
Q ss_pred --------hHHHHHHHHHh----CCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 90 --------DYNMFVEEYRK----NPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 90 --------e~~~f~~~~~~----~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
|+++|+++|++ +++++||+||+++++|+||.++++++++.++.+. ....+|||+||+||
T Consensus 122 ~~~~~~~~E~~~F~~~~~~~~~~~~~~~wI~KP~~~srG~GI~l~~~~~~i~~~~~~---------~~~~~VvQkYI~~P 192 (380)
T 3tig_A 122 LANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGILISSDATELLDFIDN---------QGQVHVIQKYLESP 192 (380)
T ss_dssp --------CCHHHHHHHHHHHHTTCCCCEEEEESCC----CCBCCSCSHHHHHHHHH---------HTSCEEEEECCSSB
T ss_pred cccccchhHHHHHHHHHHHhhhcCCCCeEEEeCCccCCCCCEEEeCCHHHHHHHHhc---------cCCcEEEEecccCc
Confidence 45679988864 5689999999999999999999999999877653 24689999999999
Q ss_pred ccc--cCccceeeEEEEEeeecCcEEEEEcCceEeecCCCCCCCcccccccccCCcccccccc-CCCcCC-CCCCccchH
Q psy9333 158 LLI--GGKKFDLRLYVLVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKH-GADYNN-IHGGKMNLQ 233 (308)
Q Consensus 158 lLi--~grKFDlR~yvLvts~~Pl~vy~y~~g~vR~a~~~Y~~~~~~~~~~~~HLTN~siqk~-~~~~~~-~~g~~wsl~ 233 (308)
+|| +|||||||+|||||| ||+||+|++|++|||+++|+ .+++++.++||||+||||+ +++|+. +.|++|+++
T Consensus 193 lLi~~~grKFDlR~Yvlvts--~l~vy~y~~g~~Rfa~~~y~--~~~~~~~~~HLTN~~iqk~~~~~y~~~~~g~~~~~~ 268 (380)
T 3tig_A 193 LLLEPGHRKFDIRSWVLVDN--QYNIYLYREGVLRTSSEPYS--DTNFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFE 268 (380)
T ss_dssp CCBTTTTBCEEEEEEEEECT--TCCEEECSCCEEEECC------------------------------------CCBCHH
T ss_pred eeecCCCceeEEEEEEEEcC--CCEEEEEcCCEEEecCCCcC--ccchhhhhhhccccccccccccccccccCCCcCcHH
Confidence 999 999999999999999 99999999999999999995 4588889999999999996 567875 468999999
Q ss_pred HHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhc---ccc--------cCCCCCccchhhhccccc
Q psy9333 234 NLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKW---SRE--------SKTPFNPILVKESYVISK 295 (308)
Q Consensus 234 ~l~~~L~~~~g~~~~~~i~~~I~~ii~~t~~a~~p~~~~~~---~~~--------~~~~f~p~l~~~~~~~d~ 295 (308)
+|++||++..+.++.+.||++|+++|++++.|+++.|.... .++ .|..++|||+|+|.+|++
T Consensus 269 ~f~~yL~~~~~~~~~~~i~~~I~~ii~~~l~a~~~~i~~~~~~~~~FEl~G~D~lid~~l~~wllEVN~~P~~ 341 (380)
T 3tig_A 269 EFNQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLKVWLIEVNGAPAC 341 (380)
T ss_dssp HHHHHHSTTSSCCHHHHTHHHHHHHHHHHHHHHHHHHCCTTSSSEECEEEEEEEEEBTTCCEEEEEEESSCCC
T ss_pred HHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCceEEEEeEEEEEcCCCcEEEEEEeCCCCc
Confidence 99999988767777789999999999999999999998642 112 266777777777777776
No 2
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=97.32 E-value=0.00043 Score=62.60 Aligned_cols=78 Identities=22% Similarity=0.260 Sum_probs=55.9
Q ss_pred eeeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEc-CchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 80 FIPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLIN-KLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 80 ~~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~-~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
-+|+|+.+ +.++.+|.+.+ + .+|+||..++.|+|+.+++ +.+++....+... ......+++|+||+-
T Consensus 134 ~~P~t~~~~~~~~~~~~~~~~----~-p~vvKP~~g~~g~Gv~~v~~~~~~l~~~~~~~~-----~~~~~~~lvqe~i~~ 203 (316)
T 1gsa_A 134 LTPETLVTRNKAQLKAFWEKH----S-DIILKPLDGMGGASIFRVKEGDPNLGVIAETLT-----EHGTRYCMAQNYLPA 203 (316)
T ss_dssp TSCCEEEESCHHHHHHHHHHH----S-SEEEECSSCCTTTTCEEECTTCTTHHHHHHHHT-----TTTTSCEEEEECCGG
T ss_pred cCCCeEEeCCHHHHHHHHHHc----C-CEEEEECCCCCcccEEEecCChHHHHHHHHHHH-----hcCCceEEEecccCC
Confidence 56888776 45666776665 2 5899999999999999998 7667665443211 012368999999973
Q ss_pred CccccCccceeeEEEE
Q psy9333 157 PLLIGGKKFDLRLYVL 172 (308)
Q Consensus 157 PlLi~grKFDlR~yvL 172 (308)
+ ..+|+|++++
T Consensus 204 ~-----~~~~~~v~~~ 214 (316)
T 1gsa_A 204 I-----KDGDKRVLVV 214 (316)
T ss_dssp G-----GGCEEEEEEE
T ss_pred C-----CCCCEEEEEE
Confidence 2 2689998875
No 3
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=96.77 E-value=0.00094 Score=61.99 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=46.4
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEee
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTS 175 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts 175 (308)
+-.-|+||..|++|+|+.++.+.+++...++.. ......+++|+||. + .+|+|++|+=-.
T Consensus 152 g~PvVvK~~~Gs~G~GV~lv~~~~~~~~~~~~~------~~~~~~~~vQefI~-~------g~DiRv~VvGg~ 211 (309)
T 1i7n_A 152 TFPVVVKIGHAHSGMGKVKVENHYDFQDIASVV------ALTQTYATAEPFID-A------KYDIRVQKIGNN 211 (309)
T ss_dssp CSSEEEEESSCSTTTTEEEECSHHHHHHHHHHH------HHHTCCEEEEECCC-E------EEEEEEEEETTE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHH------hccCCeEEEEeecC-C------CceEEEEEECCE
Confidence 457899999999999999999988887665421 01235677999996 2 489999998654
No 4
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=96.70 E-value=0.0015 Score=64.01 Aligned_cols=138 Identities=17% Similarity=0.230 Sum_probs=79.5
Q ss_pred CCceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccc-hhhHHHHHHHHHhCCCCe
Q psy9333 27 DNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFIL-PADYNMFVEEYRKNPAST 105 (308)
Q Consensus 27 ~~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~l-p~e~~~f~~~~~~~~~~~ 105 (308)
..-++|. ||+..+..|..++-. -.+.+.+..+ .. +...+|.++-- +.+++.+++.. ..
T Consensus 306 ~V~i~Na-~gsgv~~dKal~a~L-p~l~~~~lgE-------------e~-il~~VpT~~c~~~~~~~~vl~~l-----~~ 364 (474)
T 3n6x_A 306 GVTLANA-VGTGVADDKDTYIYV-PEMIRFYLGE-------------EP-ILSNVPTYQLSKADDLKYVLDNL-----AE 364 (474)
T ss_dssp SCEEESC-TTTHHHHSTTTGGGH-HHHHHHHHCS-------------CC-SSEECCCEETTSHHHHHHHHHSG-----GG
T ss_pred CEEEeCC-CchhhhcCcHHHHHh-HHHHHHhCCH-------------hh-hccCCCceecCCHHHHHHHHhch-----hh
Confidence 4456775 577788888644322 2222222210 11 23456644433 45555555432 47
Q ss_pred EEEcCCCCCCCCceEEEcCc--hHHHhhhhccCCCCCCcccccceEEeeccCC---Ccccc----CccceeeEEEEEeee
Q psy9333 106 WIMKPCGKSQGNGIFLINKL--SKLKKWSRESKTPFNPILVKESYVISKYIDN---PLLIG----GKKFDLRLYVLVTSF 176 (308)
Q Consensus 106 wI~KP~~~~~G~GI~l~~~~--~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~---PlLi~----grKFDlR~yvLvts~ 176 (308)
|++||..++.|.|+.+-... ++...+.+.. ......||+|++|.- |.+.+ .|++|+|+|++...
T Consensus 365 lViKp~~g~gg~gv~iG~~~s~~e~~~~~~~i------~~~p~~yIaQe~v~ls~~P~~~~~~~~~r~~dlR~F~~~g~- 437 (474)
T 3n6x_A 365 LVVKEVQGSGGYGMLVGPAASKQELEDFRQRI------LANPANYIAQPTLALSTCPTLVETGIAPRHVDLRPFVLSGK- 437 (474)
T ss_dssp EEEEECCCE-----EEGGGCCHHHHHHHHHHH------HHSGGGEEEEECCCCCEEEEEETTEEEEEEEEEECEEEESS-
T ss_pred eEEEecCCCCCCceEECCcCCHHHHHHHHHHH------HhCCCCEEEeeccCCcccceeeCCceeeeeEEEEEEEEcCC-
Confidence 89999999999999876543 3333322211 013456999999974 23334 48999999999842
Q ss_pred cCcEEEEEcCceEeecCCC
Q psy9333 177 RPLKCYLFKLGFCRFCTVK 195 (308)
Q Consensus 177 ~Pl~vy~y~~g~vR~a~~~ 195 (308)
..++...|+.|+|..+
T Consensus 438 ---~~~v~pGgltRva~~~ 453 (474)
T 3n6x_A 438 ---TVSLVPGALCRVALRE 453 (474)
T ss_dssp ---SEEECSCCEEEEECST
T ss_pred ---ceEEecceEEEEecCC
Confidence 3678899999999765
No 5
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=96.65 E-value=0.0013 Score=61.97 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEee
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTS 175 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts 175 (308)
+-.-|+||..|++|+|+.++.+.+++...++.. ......+++|+||+ + ++|+|++|+=-.
T Consensus 169 g~PvVvK~~~Gs~G~GV~lve~~~~~~~~~~~~------~~~~~~~~vQefI~-~------g~DiRv~VVGg~ 228 (344)
T 2p0a_A 169 HFPVVVKLGHAHAGMGKIKVENQLDFQDITSVV------AMAKTYATTEAFID-S------KYDIRIQKIGSN 228 (344)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHH------HHHTCCEEEEECCC-E------EEEEEEEEETTE
T ss_pred CCCEEEEeCCCCceeCeEEECCHHHHHHHHHHH------hccCCeEEEEeccC-C------CccEEEEEECCE
Confidence 447899999999999999999988887655421 01234677999996 2 589999998654
No 6
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.0039 Score=47.34 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=46.2
Q ss_pred eeccc--cc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 81 IPITF--IL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 81 ~P~T~--~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
.|+++ .. +.+...+.+.. +-..|+||..+..|+|+.++++.+++....+..............++||+||.-
T Consensus 23 ~p~~~~~~~~~~~~~~~~~~~~----~~P~vvKp~~~~~~~gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvee~i~g 98 (108)
T 2cqy_A 23 TIPGFDGVVKDAEEAVRIAREI----GYPVMIKASAGGGGKGMRIAWDDEETRDGFRLSSQEAASSFGDDRLLIEKFIDN 98 (108)
T ss_dssp CCSCCCSCBSSHHHHHHHHHHH----CSSEEEEETTSCCTTTCEEESSHHHHHHHHHHHHHHHHHHTSSCCEEEEECCSS
T ss_pred CCCCcccccCCHHHHHHHHHhc----CCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEeeccCC
Confidence 35665 33 34555554443 456899999999999999999988887655321000000011368999999974
Q ss_pred C
Q psy9333 157 P 157 (308)
Q Consensus 157 P 157 (308)
+
T Consensus 99 ~ 99 (108)
T 2cqy_A 99 P 99 (108)
T ss_dssp S
T ss_pred C
Confidence 3
No 7
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=96.56 E-value=0.00089 Score=59.46 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=50.3
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
.|+|+.+ +.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+.... . .......+++|+||+.
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~----~~p~vvKp~~g~~~~gv~~v~~~~el~~~~~~~~~-~-~~~~~~~~lvqe~i~~-- 174 (280)
T 1uc8_A 103 QPKTALATDREEALRLMEAF----GYPVVLKPVIGSWGRLLAXXXXXXXXXXXXXXKEV-L-GGFQHQLFYIQEYVEK-- 174 (280)
T ss_dssp CCCEEEESSHHHHHHHHHHH----CSSEEEECSBCCBCSHHHHHHHHHC--------------CTTTTCEEEEECCCC--
T ss_pred CCCeEeeCCHHHHHHHHHHh----CCCEEEEECCCCCcccceecccccccchhhhhHhh-h-cccCCCcEEEEeccCC--
Confidence 4777665 35566666554 34689999999999999998887776654432100 0 0012568999999963
Q ss_pred cccCccceeeEEEE
Q psy9333 159 LIGGKKFDLRLYVL 172 (308)
Q Consensus 159 Li~grKFDlR~yvL 172 (308)
..+++|++++
T Consensus 175 ----~~~e~~v~v~ 184 (280)
T 1uc8_A 175 ----PGRDIRVFVV 184 (280)
T ss_dssp ----SSCCEEEEEE
T ss_pred ----CCceEEEEEE
Confidence 4578998885
No 8
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=96.51 E-value=0.0018 Score=62.42 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=46.3
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEee
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTS 175 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts 175 (308)
+---|+||..|++|+|+.++++.+++...++.. ......+++|+||+ + ++|+|++|+=-.
T Consensus 264 g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~~~------~~~~~~~~vQEfI~-~------g~DIRv~VVGg~ 323 (422)
T 1pk8_A 264 TYPVVVKMGHAHSGMGKVKVDNQHDFQDIASVV------ALTKTYATAEPFID-A------KYDVRVQKIGQN 323 (422)
T ss_dssp SSSEEEEESSCCTTTTEEEECSHHHHHHHHHHH------HHHTSCEEEEECCC-E------EEEEEEEEETTE
T ss_pred CCCEEEEeCCCCceeCeEEeCCHHHHHHHHHHH------hccCceEEEEeecC-C------CceEEEEEECCE
Confidence 457899999999999999999988887766421 01235677999997 2 589999998654
No 9
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=96.33 E-value=0.0058 Score=55.00 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=43.3
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvL 172 (308)
+-.+|+||..++.|+|+.++++.+++....+... .....+++|+||+ |+ ++|+.++
T Consensus 138 ~~p~vvKP~~g~~~~gv~~v~~~~el~~~~~~~~------~~~~~~lvee~i~------g~--e~~v~~~ 193 (306)
T 1iow_A 138 GLPVIVKPSREGSSVGMSKVVAENALQDALRLAF------QHDEEVLIEKWLS------GP--EFTVAIL 193 (306)
T ss_dssp CSSEEEEETTCCTTTTCEEESSGGGHHHHHHHHT------TTCSEEEEEECCC------CC--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH------hhCCCEEEEeCcC------CE--EEEEEEE
Confidence 4479999999999999999999988877654321 1246899999996 44 7777766
No 10
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=95.99 E-value=0.0083 Score=54.72 Aligned_cols=71 Identities=11% Similarity=0.273 Sum_probs=49.2
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCC---CceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQG---NGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G---~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+|+|+.+ +.+..++.+.. +-+-.+|+||..|+.| +|+.++.+.+++.. ...++++|+||+
T Consensus 113 ~P~~~~~~~~~~~~~~~~~~--~~~~P~vvKP~~g~g~~~s~gv~~v~~~~~l~~-------------~~~~~lvqe~i~ 177 (324)
T 1z2n_X 113 IPNSFSVKSKEEVIQLLQSK--QLILPFIVKPENAQGTFNAHQMKIVLEQEGIDD-------------IHFPCLCQHYIN 177 (324)
T ss_dssp CSCEEEESSHHHHHHHHHTT--CSCSSEEEEESBCSSSSGGGEEEEECSGGGGTT-------------CCSSEEEEECCC
T ss_pred CCCEEEeCCHHHHHHHHHHc--CCCCCEEEeeCCCCCCccceeeEEEeCHHHHhh-------------cCCCEEEEEccC
Confidence 5777766 33444444321 1124789999998899 99999988766532 246899999996
Q ss_pred CCccccCccceeeEEEE
Q psy9333 156 NPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 156 ~PlLi~grKFDlR~yvL 172 (308)
. .| +|+|++|+
T Consensus 178 ~----~g--~~~~v~v~ 188 (324)
T 1z2n_X 178 H----NN--KIVKVFCI 188 (324)
T ss_dssp C----TT--CEEEEEEE
T ss_pred C----CC--cEEEEEEE
Confidence 4 23 79999886
No 11
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=95.85 E-value=0.0061 Score=57.47 Aligned_cols=68 Identities=13% Similarity=0.256 Sum_probs=41.3
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
.|+++.+ +++..++.+.. +-.+|+||..++.|+|+.++++.+++....+... .......+++|+||+.
T Consensus 124 ~p~~~~~~~~~~~~~~~~~~----g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~----~~~~~~~~lvEe~i~g 193 (403)
T 4dim_A 124 TARHFVVRNENELKNALENL----KLPVIVKATDLQGSKGIYIAKKEEEAIDGFNETM----NLTKRDYCIVEEFIEG 193 (403)
T ss_dssp CCCEECCCSHHHHHHHHHTS----CSSEEEECSCC-----CEEESSHHHHHHHHHHHH----HHCSSSCCEEEECCCS
T ss_pred CCCEEEeCCHHHHHHHHhcC----CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH----hcCcCCcEEEEEccCC
Confidence 4555554 34555554332 4569999999999999999999988876554210 0012467999999974
No 12
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=95.65 E-value=0.0098 Score=54.34 Aligned_cols=63 Identities=8% Similarity=0.126 Sum_probs=27.0
Q ss_pred eeccccchhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 81 IPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 81 ~P~T~~lp~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
.|+|+..+.+..+++.. ..-+..+|+||..++.|+|+.++++.+++....+. ...+++|+||+
T Consensus 129 ~p~~~~~~~~~~~~~~~--~~~~~P~vvKp~~g~g~~gv~~v~~~~el~~~~~~----------~~~~lvee~i~ 191 (331)
T 2pn1_A 129 HARTYATMASFEEALAA--GEVQLPVFVKPRNGSASIEVRRVETVEEVEQLFSK----------NTDLIVQELLV 191 (331)
T ss_dssp CCCEESSHHHHHHHHHT--TSSCSCEEEEESBC---------------------------------CEEEEECCC
T ss_pred CCcEEecHHHhhhhhhc--ccCCCCEEEEeCCCCCCCCeEEeCCHHHHHHHHHh----------CCCeEEEecCC
Confidence 46666655555444420 12245799999999999999999988887665431 35899999996
No 13
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=95.65 E-value=0.019 Score=53.76 Aligned_cols=108 Identities=14% Similarity=0.221 Sum_probs=67.9
Q ss_pred CceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccchh----hHHHHHHHHHhCCC
Q psy9333 28 NQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPA----DYNMFVEEYRKNPA 103 (308)
Q Consensus 28 ~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~lp~----e~~~f~~~~~~~~~ 103 (308)
.-.+|-..+...+..|-.+.+.|.+..-... .. . =-+|+|+.+.. +....+... .-+
T Consensus 102 v~vinp~~ai~~~~dk~~~~~~L~k~~~~~~--~~-----------g----Ip~P~t~~~~~~~~~~~~~~~~~~--~lg 162 (346)
T 2q7d_A 102 TIVLDPLPAIRTLLDRSKSYELIRKIEAYME--DD-----------R----ICSPPFMELTSLCGDDTMRLLEKN--GLT 162 (346)
T ss_dssp SEEESCHHHHHHTTBHHHHHHHHHHHHHHHC--BT-----------T----EECCCEEEECSCCCTTHHHHHHHT--TCC
T ss_pred eEEcCCHHHHHHhhhHHHHHHHHHhhccccc--CC-----------C----CCCCCEEEEeCCCHHHHHHHHHhc--CCC
Confidence 3456666666667788888777766422110 00 0 12688888753 444443321 224
Q ss_pred CeEEEcCCC--CCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEE
Q psy9333 104 STWIMKPCG--KSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 104 ~~wI~KP~~--~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLv 173 (308)
-..|+||.. |+.|+|+.++.+.+++..+ ..++++|+||+. +| .|+|+||+=
T Consensus 163 ~P~VvKP~~g~Gs~s~~v~~v~~~~~l~~~-------------~~~~lvQefI~~----~G--~dirv~VvG 215 (346)
T 2q7d_A 163 FPFICKTRVAHGTNSHEMAIVFNQEGLNAI-------------QPPCVVQNFINH----NA--VLYKVFVVG 215 (346)
T ss_dssp SSEEEECSBCSSTTCCEEEEECSGGGTTC---------------CCEEEEECCCC----TT--EEEEEEEET
T ss_pred CCEEEEecCCCcceeeeeEEecCHHHHHhc-------------CCCEEEEEeeCC----CC--eEEEEEEEC
Confidence 578999974 3458899999987766431 357999999974 35 599999973
No 14
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=95.46 E-value=0.043 Score=52.00 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=51.3
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCcc
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLL 159 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlL 159 (308)
|+++.+ +.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+.... ......+++|+||+-
T Consensus 117 p~~~~~~~~~~~~~~~~~~----~~P~vvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~----~~~~~~~lvEe~i~g--- 185 (417)
T 2ip4_A 117 ARYRVFREPLEALAYLEEV----GVPVVVKDSGLAAGKGVTVAFDLHQAKQAVANILN----RAEGGEVVVEEYLEG--- 185 (417)
T ss_dssp CCEEEESSHHHHHHHHHHH----CSSEEEECTTSCSSTTCEEESCHHHHHHHHHHHTT----SSSCCCEEEEECCCS---
T ss_pred CCeeeeCCHHHHHHHHHHc----CCCEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHh----hccCCeEEEEECccC---
Confidence 444443 34555555544 34799999999999999999999888776543210 011268999999963
Q ss_pred ccCccceeeEEEEE
Q psy9333 160 IGGKKFDLRLYVLV 173 (308)
Q Consensus 160 i~grKFDlR~yvLv 173 (308)
+ ++++.++.
T Consensus 186 ---~--E~sv~~~~ 194 (417)
T 2ip4_A 186 ---E--EATVLALT 194 (417)
T ss_dssp ---C--EEEEEEEE
T ss_pred ---c--EEEEEEEE
Confidence 3 66666665
No 15
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=95.39 E-value=0.034 Score=52.75 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=45.8
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
|+++.+ +.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+.......-......+++|+||+
T Consensus 118 p~~~~~~~~~~~~~~~~~~----~~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~ 189 (424)
T 2yw2_A 118 ARYEVFTDFEKAKEYVEKV----GAPIVVKADGLAAGKGAVVCETVEKAIETLDRFLNKKIFGKSSERVVIEEFLE 189 (424)
T ss_dssp CCEEEESCHHHHHHHHHHH----CSSEEEEESSCCTTCSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred CCeEEECCHHHHHHHHHHc----CCcEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCC
Confidence 555444 34555565544 34689999999999999999999888765543210000000136899999996
No 16
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=95.35 E-value=0.026 Score=51.46 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=47.9
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
.|+++.+ +.+...+.++....-+-.+|+||..++.|.|+.++++.+++....+... .....++||+||+.
T Consensus 122 ~p~~~~~~~~~~~~~~~~~~~~~~g~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~------~~~~~~lvEe~i~~-- 193 (317)
T 4eg0_A 122 TPPFETVMRGDDYAARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAALSEAA------THDKIVIVEKSIEG-- 193 (317)
T ss_dssp CCCEEEEETTSCHHHHHHHHHHHHCSCEEEEECC-----CCEEECSGGGHHHHHHHHT------TTCSEEEEEECCCS--
T ss_pred CCCEEEEECchhHHHHHHHHHHhcCCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH------hCCCeEEEEcCCCC--
Confidence 4566655 3455555522111114468999999999999999999988877654321 12468999999972
Q ss_pred cccCccceeeEEEEE
Q psy9333 159 LIGGKKFDLRLYVLV 173 (308)
Q Consensus 159 Li~grKFDlR~yvLv 173 (308)
|+ ++++-|+.
T Consensus 194 ---G~--E~~v~vl~ 203 (317)
T 4eg0_A 194 ---GG--EYTACIAG 203 (317)
T ss_dssp ---SE--EEEEEEET
T ss_pred ---Cc--EEEEEEEC
Confidence 43 66666654
No 17
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=95.16 E-value=0.027 Score=52.51 Aligned_cols=58 Identities=21% Similarity=0.260 Sum_probs=44.4
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEe
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVT 174 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvt 174 (308)
+-.+|+||..+..|.|+.++.+.+++....+... .....++||+||+ |+ ++++-|+..
T Consensus 171 g~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~------~~~~~~lvEe~I~------G~--E~~v~vl~~ 228 (364)
T 2i87_A 171 NYPVFVKPANLGSSVGISKCNNEAELKEGIKEAF------QFDRKLVIEQGVN------AR--EIEVAVLGN 228 (364)
T ss_dssp CSSEEEEESSCSSCTTCEEESSHHHHHHHHHHHH------TTCSEEEEEECCC------CE--EEEEEEEES
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH------hcCCeEEEEeCcc------Ce--EEEEEEEcC
Confidence 4578999999999999999999988877654321 1246899999996 54 677777764
No 18
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=95.05 E-value=0.04 Score=52.80 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 88 PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+..............+++|+||+.|
T Consensus 145 ~~e~~~~~~~~----g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 210 (446)
T 3ouz_A 145 AEAAKKLAKEI----GYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNP 210 (446)
T ss_dssp HHHHHHHHHHH----CSSEEEEETTCCTTCSEEEECSGGGHHHHHHHHHHHHHHHHSCCCEEEEECCSSC
T ss_pred HHHHHHHHHHh----CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence 45666666554 4468999999999999999999988876554210000000124689999999864
No 19
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=94.99 E-value=0.039 Score=52.34 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=50.8
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCcc
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLL 159 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlL 159 (308)
|+++.+ +.++.++.+.+ +-.+|+||..++.|+|+.++++.+++....+.......-......+++|+||+
T Consensus 118 p~~~~~~~~~~~~~~~~~~----~~P~vvKp~~~~~g~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~---- 189 (422)
T 2xcl_A 118 AEYETFTSFDEAKAYVQEK----GAPIVIKADGLAAGKGVTVAMTEEEAIACLHDFLEDEKFGDASASVVIEEYLS---- 189 (422)
T ss_dssp CCEEEESCHHHHHHHHHHH----CSSEEEEESSCGGGTCEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC----
T ss_pred CCeEEECCHHHHHHHHHhc----CCCEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhhhhccCCCCeEEEEECCc----
Confidence 555444 44556665554 34689999999999999999998888765543210000000136899999996
Q ss_pred ccCccceeeEEEEE
Q psy9333 160 IGGKKFDLRLYVLV 173 (308)
Q Consensus 160 i~grKFDlR~yvLv 173 (308)
|+ ++++.++.
T Consensus 190 --g~--E~sv~~~~ 199 (422)
T 2xcl_A 190 --GE--EFSLMAFV 199 (422)
T ss_dssp --SE--EEEEEEEE
T ss_pred --Cc--EEEEEEEE
Confidence 33 55555554
No 20
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=94.81 E-value=0.017 Score=52.13 Aligned_cols=56 Identities=18% Similarity=0.282 Sum_probs=38.1
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvL 172 (308)
+-.+|+||..++.|.|+.++.+.+++....+... .....++||+||+ |+ ++++.++
T Consensus 133 ~~P~vvKP~~~~~s~Gv~~v~~~~el~~~~~~~~------~~~~~~lvee~i~------G~--e~~v~v~ 188 (307)
T 3r5x_A 133 GFPLVVKPNSGGSSVGVKIVYDKDELISMLETVF------EWDSEVVIEKYIK------GE--EITCSIF 188 (307)
T ss_dssp CSSEEEEECC----CCCEEECSHHHHHHHHHHHH------HHCSEEEEEECCC------SE--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH------hcCCCEEEECCcC------CE--EEEEEEE
Confidence 3468999999999999999999888876554310 1246899999996 43 6666663
No 21
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=94.78 E-value=0.022 Score=58.78 Aligned_cols=76 Identities=18% Similarity=0.310 Sum_probs=51.5
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEc---CchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLIN---KLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~---~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+|++... +.+..++.. ..-+..+|+||..|+.|+|+.++. +.+++....+... .....++||+||.
T Consensus 499 vP~~~~~~~~~ea~~~~~---~~~g~PvVVKP~~G~~G~GV~iv~~~~s~eel~~a~~~~~------~~~~~vlVEefI~ 569 (750)
T 3ln6_A 499 TPFGDEFTDRKEALNYFS---QIQDKPIVVKPKSTNFGLGISIFKTSANLASYEKAIDIAF------TEDSAILVEEYIE 569 (750)
T ss_dssp CCCCCCEETTTTHHHHHH---HSSSSCEEEEETTCCSSSSCEEESSCCCHHHHHHHHHHHH------HHCSEEEEEECCC
T ss_pred CCCEEEECCHHHHHHHHH---HhcCCcEEEEeCCCCCCCCEEEEeCCCCHHHHHHHHHHHH------hhCCcEEEEeccC
Confidence 4566555 344444332 223567999999999999999998 6777765543210 1246899999996
Q ss_pred CCccccCccceeeEEEEE
Q psy9333 156 NPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 156 ~PlLi~grKFDlR~yvLv 173 (308)
|+ |+|+.|+-
T Consensus 570 ------G~--E~~v~Vvg 579 (750)
T 3ln6_A 570 ------GT--EYRFFVLE 579 (750)
T ss_dssp ------SE--EEEEEEET
T ss_pred ------CC--EEEEEEEC
Confidence 54 99998873
No 22
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=94.50 E-value=0.041 Score=52.83 Aligned_cols=80 Identities=13% Similarity=0.234 Sum_probs=46.7
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCcc
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLL 159 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlL 159 (308)
|++..+ +.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+.......-......++||+||+
T Consensus 139 p~~~~~~~~~~~~~~~~~~----~~PvVvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~---- 210 (451)
T 2yrx_A 139 ADHAAFTSYEEAKAYIEQK----GAPIVIKADGLAAGKGVTVAQTVEEALAAAKAALVDGQFGTAGSQVVIEEYLE---- 210 (451)
T ss_dssp CCEEEESCHHHHHHHHHHH----CSSEEEEECC----CCEEEESSHHHHHHHHHHHHHHSCCBTTBCCEEEEECCC----
T ss_pred CCeEEECCHHHHHHHHHhc----CCcEEEEeCCCCCCCcEEEECCHHHHHHHHHHHHhccccCCCCCeEEEEECCc----
Confidence 555444 45566665554 34689999999999999999998888765432100000000136899999996
Q ss_pred ccCccceeeEEEEE
Q psy9333 160 IGGKKFDLRLYVLV 173 (308)
Q Consensus 160 i~grKFDlR~yvLv 173 (308)
|+ ++.+.++.
T Consensus 211 --G~--E~sv~~~~ 220 (451)
T 2yrx_A 211 --GE--EFSFMAFV 220 (451)
T ss_dssp --SE--EEEEEEEE
T ss_pred --Cc--EEEEEEEE
Confidence 43 55555554
No 23
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=94.47 E-value=0.021 Score=54.81 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 88 PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+..............+++|+||+.+
T Consensus 140 ~~~~~~~~~~~----g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 1ulz_A 140 LEEAKALAREI----GYPVLLKATAGGGGRGIRICRNEEELVKNYEQASREAEKAFGRGDLLLEKFIENP 205 (451)
T ss_dssp HHHHHHHHHHH----CSSEEEEECSSSSCCSCEEESSHHHHHHHHHHHHHHHHHTTSCCCEEEEECCCSC
T ss_pred HHHHHHHHHHc----CCCEEEEECCCCCCccEEEeCCHHHHHHHHHHHHHHHHHhcCCCeEEEEEcccCC
Confidence 45666666554 3469999999999999999999888876543210000000124689999999754
No 24
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=94.44 E-value=0.17 Score=47.49 Aligned_cols=97 Identities=8% Similarity=0.126 Sum_probs=60.7
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCC-CCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQ-GNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~-G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
.|+++.+ ++++.++.+.. +-.+|+||..+.. |+|+.++++.+++....+.. ....+++|+||+..
T Consensus 127 ~p~~~~~~~~~~~~~~~~~~----g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~--------~~~~~lvEe~i~g~ 194 (389)
T 3q2o_A 127 VATYRLVQNQEQLTEAIAEL----SYPSVLKTTTGGYDGKGQVVLRSEADVDEARKLA--------NAAECILEKWVPFE 194 (389)
T ss_dssp CCCEEEESSHHHHHHHHHHH----CSSEEEEESSCCSSSCCEEEESSGGGHHHHHHHH--------HHSCEEEEECCCCS
T ss_pred CCCeEEECCHHHHHHHHHhc----CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhc--------CCCCEEEEecccCc
Confidence 3555544 35566666554 4468999998864 89999999998887765431 24689999999721
Q ss_pred ccccCccceeeEEEEEee-----ecCcEEEEEcCceEeecCCCC
Q psy9333 158 LLIGGKKFDLRLYVLVTS-----FRPLKCYLFKLGFCRFCTVKY 196 (308)
Q Consensus 158 lLi~grKFDlR~yvLvts-----~~Pl~vy~y~~g~vR~a~~~Y 196 (308)
.++.+-++... .-|..-.+.+.|....+..|.
T Consensus 195 -------~E~~v~~~~~~~G~~~~~~~~e~~~~~g~~~~~~~p~ 231 (389)
T 3q2o_A 195 -------KEVSVIVIRSVSGETKVFPVAENIHVNNILHESIVPA 231 (389)
T ss_dssp -------EEEEEEEEECTTCCEEECCCEEEEEETTEEEEEEESC
T ss_pred -------eEEEEEEEEcCCCCEEEecCeeeEEcCCceEEEECCC
Confidence 25566555431 113333455666554444443
No 25
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=94.43 E-value=0.045 Score=51.15 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=49.0
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
.|++..+ +.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+..... .......+++|+||+.
T Consensus 128 ~p~~~~~~~~~~~~~~~~~~----g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~~~~~~lvEe~i~~-- 199 (391)
T 1kjq_A 128 TSTYRFADSESLFREAVADI----GYPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQG--GRAGAGRVIVEGVVKF-- 199 (391)
T ss_dssp BCCEEEESSHHHHHHHHHHH----CSSEEEEESCC---CCCEEECSGGGHHHHHHHHHHH--SGGGCCCEEEEECCCC--
T ss_pred CCCeeeeCCHHHHHHHHHhc----CCCEEEEeCCCCCCCCeEEECCHHHHHHHHHHHHhh--cccCCCCEEEEEecCC--
Confidence 3555444 45566665554 346999999999999999999988887655421000 0002468999999973
Q ss_pred cccCccceeeEEEEEe
Q psy9333 159 LIGGKKFDLRLYVLVT 174 (308)
Q Consensus 159 Li~grKFDlR~yvLvt 174 (308)
|+ ++++.++..
T Consensus 200 ---g~--E~sv~~~~~ 210 (391)
T 1kjq_A 200 ---DF--EITLLTVSA 210 (391)
T ss_dssp ---SE--EEEEEEEEE
T ss_pred ---Ce--EEEEEEEEe
Confidence 32 556655543
No 26
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=94.31 E-value=0.058 Score=51.73 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhCCCCe-EEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCcccee
Q psy9333 89 ADYNMFVEEYRKNPAST-WIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDL 167 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~-wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDl 167 (308)
.+..++.+.. +-. +|+||..++.|+|+.++++.+++....+.......-......+++|+||+- + ++
T Consensus 153 ~~~~~~~~~~----g~P~vvvKp~~~~gg~Gv~~v~~~~el~~~~~~~~~~~~~g~~~~~~lvEe~i~G------~--E~ 220 (452)
T 2qk4_A 153 EEACSFILSA----DFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDG------E--EV 220 (452)
T ss_dssp HHHHHHHHHC----SSCEEEEEESBC---CCEEECSSHHHHHHHHHHHTTC-------CCEEEEECCCS------E--EE
T ss_pred HHHHHHHHhC----CCCeEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCC------C--eE
Confidence 4444444332 345 999999999999999999998887765432110000001368999999963 2 55
Q ss_pred eEEEEE
Q psy9333 168 RLYVLV 173 (308)
Q Consensus 168 R~yvLv 173 (308)
.+.++.
T Consensus 221 sv~~~~ 226 (452)
T 2qk4_A 221 SCLCFT 226 (452)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 555554
No 27
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=94.31 E-value=0.044 Score=52.78 Aligned_cols=71 Identities=10% Similarity=0.088 Sum_probs=45.6
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
.|++..+ +.+..++.+.+ +-.+|+||..++.|+|+.++++.+++.+..+.......-......+|||+||+
T Consensus 138 ~p~~~~~~~~~ea~~~~~~~----g~PvVvKp~~~~gg~GV~iv~~~eel~~a~~~~~~~~~~g~~~~~vlvEe~i~ 210 (442)
T 3lp8_A 138 TAKYGYFVDTNSAYKFIDKH----KLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMLVHHKFGEAGCAIIIEEFLE 210 (442)
T ss_dssp BCCEEEESSHHHHHHHHHHS----CSSEEEEESSCCTTTSEEEESSHHHHHHHHHHHHTSCTTGGGGSSEEEEECCC
T ss_pred CCCEEEECCHHHHHHHHHHc----CCcEEEeECCCCCCCeEEEeCCHHHHHHHHHHHHhhcccCCCCCeEEEEEeec
Confidence 3454444 34555554443 45699999999999999999999888765543210000001236899999996
No 28
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=94.23 E-value=0.21 Score=47.30 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCC-CCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCcccee
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKS-QGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDL 167 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDl 167 (308)
.++.++.+.. +-.+|+||..++ .|+|+.++++.+++....+.. ....+++|+||+. | .++
T Consensus 150 ~~~~~~~~~~----g~P~VvKp~~gg~~g~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~~-----~--~E~ 210 (403)
T 3k5i_A 150 AELAKVGEQL----GYPLMLKSKTMAYDGRGNFRVNSQDDIPEALEAL--------KDRPLYAEKWAYF-----K--MEL 210 (403)
T ss_dssp HHHHHHHHHH----CSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHT--------TTSCEEEEECCCE-----E--EEE
T ss_pred HHHHHHHHHh----CCCEEEEeCCCCcCCCCEEEECCHHHHHHHHHhc--------CCCcEEEecCCCC-----C--eEE
Confidence 4555555554 446899998776 999999999998887765432 2468999999962 1 255
Q ss_pred eEEEEEee----ecCcEEEEEcCceEeecCCCC
Q psy9333 168 RLYVLVTS----FRPLKCYLFKLGFCRFCTVKY 196 (308)
Q Consensus 168 R~yvLvts----~~Pl~vy~y~~g~vR~a~~~Y 196 (308)
.+.++... .-|..--++++|....+..|-
T Consensus 211 sv~v~~~~~g~~~~p~~~~~~~~g~~~~~~~Pa 243 (403)
T 3k5i_A 211 AVIVVKTKDEVLSYPTVETVQEDSICKLVYAPA 243 (403)
T ss_dssp EEEEEECSSCEEECCCEEEEEETTEEEEEEESC
T ss_pred EEEEEEcCCCEEEeCCeeeEEeCCEEEEEEeCC
Confidence 55555531 224333345566554443343
No 29
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=94.15 E-value=0.038 Score=51.40 Aligned_cols=56 Identities=9% Similarity=0.159 Sum_probs=37.7
Q ss_pred CCeEEEcCCCCC-CCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEE
Q psy9333 103 ASTWIMKPCGKS-QGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 103 ~~~wI~KP~~~~-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLv 173 (308)
+-.+|+||..++ .|+|+.++++.+++....+.. ....+++|+||+. |+ ++.+.++.
T Consensus 131 g~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~--------~~~~~lvEe~i~~-----g~--e~sv~~~~ 187 (369)
T 3aw8_A 131 GLPALLKTRRGGYDGKGQALVRTEEEALEALKAL--------GGRGLILEGFVPF-----DR--EVSLLAVR 187 (369)
T ss_dssp CSSEEEEECCC------EEEECSHHHHHHHHTTT--------CSSSEEEEECCCC-----SE--EEEEEEEE
T ss_pred CCCEEEEEcCCCCCcceEEEECCHHHHHHHHHhc--------CCCcEEEEEcCCC-----CE--EEEEEEEE
Confidence 457999999999 999999999999888766432 2468999999973 33 45555554
No 30
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=94.13 E-value=0.056 Score=51.44 Aligned_cols=68 Identities=18% Similarity=0.144 Sum_probs=39.3
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
|++..+ +.++.++.+.. +-.+|+||..++.|+|+.++++.+++....+..... .......+++|+||+
T Consensus 137 p~~~~~~~~~~~~~~~~~~----g~P~vvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~--~~~~~~~~lvEe~i~ 206 (433)
T 2dwc_A 137 SRYMYATTLDELYEACEKI----GYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTK--ARGSAEKIIVEEHID 206 (433)
T ss_dssp CCEEEESSHHHHHHHHHHH----CSSEEEEECCC------EEECSGGGHHHHHHC-----------CCEEEEECCC
T ss_pred CCeeEeCCHHHHHHHHHhc----CCCEEEEECCCcCCCCeEEECCHHHHHHHHHHHHhh--cccCCCCEEEEccCC
Confidence 454444 34555665544 346899999999999999999998888766532100 000246899999997
No 31
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=94.12 E-value=0.029 Score=53.96 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 88 PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+..............+++|+||+.+
T Consensus 146 ~~~~~~~~~~~----g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 211 (461)
T 2dzd_A 146 LEDVVAFAEAH----GYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAAFGSDEVYVEKLIENP 211 (461)
T ss_dssp HHHHHHHHHHH----CSCEEEEESTTCSSSSEEEECCGGGHHHHHHHHHHHHHHHTSCCCEEEEECCCSC
T ss_pred HHHHHHHHHhc----CCcEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 45666665544 3469999999999999999999888876543210000000124689999999754
No 32
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=94.02 E-value=0.062 Score=49.60 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=44.8
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEee
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTS 175 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts 175 (308)
+-.+|+||..+..|.|+.++++.+++....+... .....++||+||+ |+ ++++.++...
T Consensus 165 ~~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~------~~~~~~lvEe~I~------G~--E~~v~vl~~~ 223 (343)
T 1e4e_A 165 TYPVFVKPARSGSSFGVKKVNSADELDYAIESAR------QYDSKILIEQAVS------GC--EVGCAVLGNS 223 (343)
T ss_dssp CSCEEEEESSCCTTTTCEEECSGGGHHHHHHHHT------TTCSSEEEEECCC------SE--EEEEEEEEET
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH------hcCCcEEEEeCcC------Ce--EEEEEEEeCC
Confidence 3469999999999999999999988887655321 1246899999996 54 6777776543
No 33
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=93.95 E-value=0.082 Score=50.51 Aligned_cols=66 Identities=17% Similarity=0.308 Sum_probs=44.1
Q ss_pred hhhH-HHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 88 PADY-NMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 88 p~e~-~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+.+. .++.+.. +-.+|+||..++.|+|+.++++.+++....+..............+++|+||+.+
T Consensus 141 ~~~~~~~~~~~~----g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 207 (449)
T 2w70_A 141 DMDKNRAIAKRI----GYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENP 207 (449)
T ss_dssp CHHHHHHHHHHH----CSSEEEEETTCCTTTTCEEECSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCSSC
T ss_pred HHHHHHHHHHHh----CCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEeccCCC
Confidence 4566 6666554 3469999999999999999999888876543210000000114689999999753
No 34
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=93.93 E-value=0.085 Score=50.46 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 88 PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+..............+++|+||+.+
T Consensus 140 ~~~~~~~~~~~----g~PvvvKp~~g~gg~Gv~~v~~~~el~~~~~~~~~~~~~~~~~~~~lvEe~i~g~ 205 (451)
T 2vpq_A 140 VSEAKKIAKKI----GYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENF 205 (451)
T ss_dssp HHHHHHHHHHH----CSSEEEEETTCCTTCSEEEESSHHHHHHHHHHHHHHHHHHHSCCCEEEEECCCSE
T ss_pred HHHHHHHHHhc----CCcEEEEECCCCCCCCEEEeCCHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCC
Confidence 45666665554 3468999999999999999999888876553210000000123689999999753
No 35
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=93.77 E-value=0.042 Score=52.70 Aligned_cols=81 Identities=12% Similarity=0.159 Sum_probs=51.4
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCcc
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLL 159 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlL 159 (308)
|++..+ +.+..++.+.. +-.+|+||..++.|+|+.++++.+++.+..+.......-......+|||+||+
T Consensus 123 p~~~~~~~~~ea~~~~~~~----g~PvVvKp~~~~gg~GV~iv~~~~el~~a~~~~~~~~~~g~~~~~vlvEe~i~---- 194 (431)
T 3mjf_A 123 AEYQNFTDVEAALAYVRQK----GAPIVIKADGLAAGKGVIVAMTQEEAETAVNDMLAGNAFGDAGHRIVVEEFLD---- 194 (431)
T ss_dssp CCEEEESCHHHHHHHHHHH----CSSEEEEESSSCTTCSEEEECSHHHHHHHHHHHHTTHHHHCCCCCEEEEECCC----
T ss_pred CCeEeeCCHHHHHHHHHHc----CCeEEEEECCCCCCCcEEEeCCHHHHHHHHHHHHhhccccCCCCeEEEEEeeC----
Confidence 454443 45566666554 45699999999999999999999888765543210000001135899999996
Q ss_pred ccCccceeeEEEEEe
Q psy9333 160 IGGKKFDLRLYVLVT 174 (308)
Q Consensus 160 i~grKFDlR~yvLvt 174 (308)
|+ ++.+.++..
T Consensus 195 --G~--E~sv~~~~d 205 (431)
T 3mjf_A 195 --GE--EASFIVMVD 205 (431)
T ss_dssp --SE--EEEEEEEEE
T ss_pred --Cc--EEEEEEEEc
Confidence 43 555555543
No 36
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=93.69 E-value=0.064 Score=50.39 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=57.3
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCC-CCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKS-QGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
|++..+ ++++.++.+.. +-.+|+||..+. .|+|+.++++.+++....+.. ....+++|+||+-+
T Consensus 126 p~~~~~~~~~~~~~~~~~~----g~P~vvKp~~gg~~g~Gv~~v~~~~el~~a~~~~--------~~~~~ivEe~i~g~- 192 (377)
T 3orq_A 126 VPFISVKESTDIDKAIETL----GYPFIVKTRFGGYDGKGQVLINNEKDLQEGFKLI--------ETSECVAEKYLNIK- 192 (377)
T ss_dssp CCEEEECSSTHHHHHHHHT----CSSEEEEESSSCCTTTTEEEECSTTSHHHHHHHH--------TTSCEEEEECCCEE-
T ss_pred CCeEEECCHHHHHHHHHHc----CCCEEEEeCCCCCCCCCeEEECCHHHHHHHHHhc--------CCCcEEEEccCCCC-
Confidence 444443 35666665543 446899999885 899999999998887665432 23789999999721
Q ss_pred cccCccceeeEEEEEee-----ecCcEEEEEcCceEeec
Q psy9333 159 LIGGKKFDLRLYVLVTS-----FRPLKCYLFKLGFCRFC 192 (308)
Q Consensus 159 Li~grKFDlR~yvLvts-----~~Pl~vy~y~~g~vR~a 192 (308)
.++.+.++... .-|..-..+++|....+
T Consensus 193 ------~E~sv~~~~~~~g~~~~~~~~e~~~~~g~~~~~ 225 (377)
T 3orq_A 193 ------KEVSLTVTRGNNNQITFFPLQENEHRNQILFKT 225 (377)
T ss_dssp ------EEEEEEEEECGGGCEEECCCEEEEEETTEEEEE
T ss_pred ------EEEEEEEEEeCCCCEEEECCEeEEEECCEEEEE
Confidence 25555555321 11333334556654443
No 37
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=93.33 E-value=0.11 Score=48.89 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccC-ccceeeE
Q psy9333 91 YNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGG-KKFDLRL 169 (308)
Q Consensus 91 ~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~g-rKFDlR~ 169 (308)
+..+.+.. +-.+|+||..+..|.|+.++++.+++....+... .....++||+||+ | + ++++
T Consensus 166 ~~~~~~~~----g~PvvVKP~~~~~s~Gv~~v~~~~el~~a~~~~~------~~~~~vlvEe~I~------G~~--E~~v 227 (377)
T 1ehi_A 166 WDKIVAEL----GNIVFVKAANQGSSVGISRVTNAEEYTEALSDSF------QYDYKVLIEEAVN------GAR--ELEV 227 (377)
T ss_dssp HHHHHHHH----CSCEEEEESSCCTTTTEEEECSHHHHHHHHHHHT------TTCSCEEEEECCC------CSC--EEEE
T ss_pred HHHHHHhc----CCCEEEEeCCCCCCcCEEEeCCHHHHHHHHHHHH------hcCCcEEEEcCCC------CCc--eEEE
Confidence 44444443 3468999999999999999999988887665321 1246899999996 3 3 6666
Q ss_pred EEEEe
Q psy9333 170 YVLVT 174 (308)
Q Consensus 170 yvLvt 174 (308)
-|+..
T Consensus 228 ~vl~~ 232 (377)
T 1ehi_A 228 GVIGN 232 (377)
T ss_dssp EEEES
T ss_pred EEEcC
Confidence 66653
No 38
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=93.22 E-value=0.08 Score=47.98 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=32.5
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
..+|+||..++.|+|+.++++.+++....+...... .......++||+||+
T Consensus 127 ~P~vvKP~~g~~s~Gv~~v~~~~el~~~~~~~~~~~-~~~~~~~~lvee~i~ 177 (334)
T 2r85_A 127 KPVIVKPHGAKGGKGYFLAKDPEDFWRKAEKFLGIK-RKEDLKNIQIQEYVL 177 (334)
T ss_dssp SCEEEEECC----TTCEEESSHHHHHHHHHHHHCCC-SGGGCCSEEEEECCC
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhc-ccCCCCcEEEEeccC
Confidence 478999999999999999999888876543210000 001236899999996
No 39
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=93.13 E-value=0.12 Score=47.82 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=44.3
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEe
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVT 174 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvt 174 (308)
-.+|+||..+..|.|+.++++.+++....+... .....++||+||+ |+ ++++.|+..
T Consensus 166 ~PvvvKP~~~~~s~Gv~~v~~~~el~~a~~~~~------~~~~~vlvEe~I~------G~--E~~v~vl~~ 222 (346)
T 3se7_A 166 YPVFVKPARSGSSFGVSKVAREEDLQGAVEAAR------EYDSKVLIEEAVI------GT--EIGCAVMGN 222 (346)
T ss_dssp SSEEEEESSCCTTTTCEEECSHHHHHHHHHHHT------TTCSEEEEEECCC------SE--EEEEEEEEE
T ss_pred CCEEEEeCCCCCCcCEEEECCHHHHHHHHHHHH------hCCCcEEEEeCcC------CE--EEEEEEEec
Confidence 468999999999999999999988877654321 1246899999996 54 777777765
No 40
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=92.86 E-value=0.088 Score=54.41 Aligned_cols=56 Identities=20% Similarity=0.356 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCCCCceEEE----cCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLI----NKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVL 172 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~----~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvL 172 (308)
+...|+||..|+.|+||.++ .+.+++....+... .....++||+||. |+ |+|+.|+
T Consensus 525 g~PvVVKP~~g~~G~GV~iv~~~v~~~eel~~al~~a~------~~~~~vlVEefI~------G~--Ei~v~Vl 584 (757)
T 3ln7_A 525 NRAVVIKPKSTNYGLGITIFQQGVQNREDFAKALEIAF------REDKEVMVEDYLV------GT--EYRFFVL 584 (757)
T ss_dssp SSCEEEEESSCSTTTTCEECSSCCCCHHHHHHHHHHHH------HHCSSEEEEECCC------SE--EEEEEEE
T ss_pred CCCEEEEeCCCCCCCCeEEecCCCCCHHHHHHHHHHHH------hcCCcEEEEEcCC------Cc--EEEEEEE
Confidence 45789999999999999998 67777766543210 1246799999994 53 9998886
No 41
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=92.82 E-value=0.11 Score=49.04 Aligned_cols=75 Identities=9% Similarity=0.185 Sum_probs=50.8
Q ss_pred eeccccch--h----hHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeecc
Q psy9333 81 IPITFILP--A----DYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYI 154 (308)
Q Consensus 81 ~P~T~~lp--~----e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI 154 (308)
.|++..+. . ++.++.... +-.+|+||..+..|.|+.++++.+++....+... .....++||+||
T Consensus 174 ~p~~~~~~~~~~~~~~~~~~~~~l----g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a~------~~~~~vlVEe~I 243 (386)
T 3e5n_A 174 VAPFVCFDRHTAAHADVDTLIAQL----GLPLFVKPANQGSSVGVSQVRTADAFAAALALAL------AYDHKVLVEAAV 243 (386)
T ss_dssp BCCEEEEEHHHHTTCCHHHHHHHH----CSSEEEEESBSCSSTTCEEECSGGGHHHHHHHHT------TTCSEEEEEECC
T ss_pred CCCEEEEeCcccchhhHHHHHHhc----CCCEEEEECCCCcCCCEEEECCHHHHHHHHHHHH------hCCCcEEEEcCC
Confidence 45555552 2 444555444 3468999999999999999999998877654321 124679999999
Q ss_pred CCCccccCccceeeEEEEE
Q psy9333 155 DNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 155 ~~PlLi~grKFDlR~yvLv 173 (308)
. |+ ++++-|+.
T Consensus 244 ~------G~--E~~v~vl~ 254 (386)
T 3e5n_A 244 A------GR--EIECAVLG 254 (386)
T ss_dssp C------SE--EEEEEEEC
T ss_pred C------Ce--EEEEEEEe
Confidence 6 43 55555554
No 42
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=92.77 E-value=0.18 Score=46.92 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=37.8
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-.+|+||..+..|+|+.++++.+++....+... ......++|+||+
T Consensus 177 g~PvvVKP~~gg~s~Gv~~v~~~~el~~~~~~a~------~~~~~vlvE~~i~ 223 (357)
T 4fu0_A 177 TYPLFIKPVRAGSSFGITKVIEKQELDAAIELAF------EHDTEVIVEETIN 223 (357)
T ss_dssp CSSEEEEETTCSSSTTCEEESSHHHHHHHHHHHT------TTCSEEEEEECCC
T ss_pred CCCEEEEECCCCCCCceEEeccHHhHHHHHHHHh------ccCCeEEEEEecC
Confidence 5678999999999999999999999887655321 1346799999985
No 43
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=92.73 E-value=0.11 Score=47.53 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=42.5
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEE
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLv 173 (308)
-.+|+||..+..|.|+.++++.+++....+... .....++||+||+-+ + ++++-|+.
T Consensus 151 ~PvvvKP~~g~~s~Gv~~v~~~~el~~a~~~~~------~~~~~vlvEe~I~G~-----~--E~~v~vl~ 207 (322)
T 2fb9_A 151 PPFFVKPANTGSSVGISRVERFQDLEAALALAF------RYDEKAVVEKALSPV-----R--ELEVGVLG 207 (322)
T ss_dssp SCEEEEETTCCTTTTCEEESSHHHHHHHHHHHT------TTCSEEEEEECCSSC-----E--EEEEEEES
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHH------hcCCeEEEEeCCCCC-----e--eEEEEEEe
Confidence 468999999999999999999988887654321 124689999999621 3 56666654
No 44
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=92.30 E-value=0.11 Score=49.29 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=36.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLv 173 (308)
+-.+|+||..+..|.|+.++++.+++.+..+.. ......++||+||+ |+ ++++-|+.
T Consensus 201 g~PvvVKP~~ggss~GV~~v~~~~el~~al~~a------~~~~~~vlVEe~I~------G~--E~~v~vl~ 257 (383)
T 3k3p_A 201 IYPVFVKPANMGSSVGISKAENRTDLKQAIALA------LKYDSRVLIEQGVD------AR--EIEVGILG 257 (383)
T ss_dssp CSSEEEEECC------CEEESSHHHHHHHHHHH------HHHCSEEEEEECCC------SE--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHH------HhCCCeEEEEcCCC------Ce--EEEEEEEe
Confidence 456899999999999999999998887655421 01245899999996 54 55565554
No 45
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=92.10 E-value=0.11 Score=48.53 Aligned_cols=53 Identities=15% Similarity=0.277 Sum_probs=36.6
Q ss_pred CCeEEEcCCCCC-CCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEe
Q psy9333 103 ASTWIMKPCGKS-QGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVT 174 (308)
Q Consensus 103 ~~~wI~KP~~~~-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvt 174 (308)
+-.+|+||..++ .|+|+.++++.+++....+ ..+++|+||+. | .++++.++..
T Consensus 132 ~~P~vvKp~~~~y~g~Gv~~v~~~~el~~~~~------------~~~lvEe~i~~-----g--~e~sv~~~~~ 185 (380)
T 3ax6_A 132 GFPVVQKARKGGYDGRGVFIIKNEKDLENAIK------------GETYLEEFVEI-----E--KELAVMVARN 185 (380)
T ss_dssp CSSEEEEESCCC-----EEEECSGGGGGGCCC------------SSEEEEECCCE-----E--EEEEEEEEEC
T ss_pred CCCEEEEecCCCCCCCCeEEECCHHHHHHHhc------------CCEEEEeccCC-----C--eeEEEEEEEC
Confidence 457999999998 9999999999887764321 68999999972 2 3666666653
No 46
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=92.04 E-value=0.057 Score=55.09 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 88 PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+.++.++.++. +-..|+||..+..|+|+.++.+.+++....+..............+++|+||+.|
T Consensus 167 ~~e~~~~a~~i----gyPvvvKp~~G~Gg~Gv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEeyI~g~ 232 (675)
T 3u9t_A 167 LETFRREAGRI----GYPVLLKAAAGGGGKGMKVVEREAELAEALSSAQREAKAAFGDARMLVEKYLLKP 232 (675)
T ss_dssp TTHHHHHHHHS----CSSBCCBCCC------CCCBCCTTTHHHHHSCCCC--------CCCBCCBCCSSC
T ss_pred HHHHHHHHHhC----CCcEEEEECCCCCCccEEEECCHHHHHHHHHHHHHHHHHhcCCCcEEEEeecCCC
Confidence 34555555443 4467999999999999999999998887665422111111235689999999876
No 47
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=92.00 E-value=0.16 Score=49.50 Aligned_cols=73 Identities=12% Similarity=0.207 Sum_probs=46.1
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccC----C-CCC-CcccccceEEee
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESK----T-PFN-PILVKESYVISK 152 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~----~-~~~-~~~~~~~~VvQk 152 (308)
.|+++.+ +++..++.++. +-..|+||..+..|+|+.++++.+++.+..+... . ... .......++||+
T Consensus 154 vp~~~~v~s~ee~~~~~~~l----g~PvVVKP~~g~gg~Gv~iv~~~eel~~a~~~~~~~~~~~~~~~a~~~~~~vlVEe 229 (474)
T 3vmm_A 154 SIKNKRVTTLEDFRAALEEI----GTPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSINVPKAVTFEAPFIAEE 229 (474)
T ss_dssp CCCEEEECSHHHHHHHHHHS----CSSEEEEESSCCTTTTCEEECCTTSHHHHHHHHHHHHTTSCCCTTCCCSCSEEEEE
T ss_pred CCCeEEECCHHHHHHHHHHc----CCCEEEEECCCCcCceEEEECCHHHHHHHHHHHHHHHhhccccccccCCCeEEEEe
Confidence 3455544 34444444433 4568999999999999999999888776543210 0 000 001237899999
Q ss_pred ccCCC
Q psy9333 153 YIDNP 157 (308)
Q Consensus 153 YI~~P 157 (308)
||+.+
T Consensus 230 ~I~G~ 234 (474)
T 3vmm_A 230 FLQGE 234 (474)
T ss_dssp CCCBC
T ss_pred CCCCc
Confidence 99855
No 48
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=91.97 E-value=0.13 Score=48.12 Aligned_cols=67 Identities=12% Similarity=0.210 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeE
Q psy9333 90 DYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRL 169 (308)
Q Consensus 90 e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~ 169 (308)
++.++.... +-.+|+||..+..|.|+.++++.+++....+.. ......++||+||+ |+ ++++
T Consensus 170 ~~~~~~~~l----g~PvvVKP~~ggss~Gv~~v~~~~el~~a~~~a------~~~~~~vlVEe~I~------G~--E~~v 231 (364)
T 3i12_A 170 SFAEVESRL----GLPLFVKPANQGSSVGVSKVANEAQYQQAVALA------FEFDHKVVVEQGIK------GR--EIEC 231 (364)
T ss_dssp CHHHHHHHH----CSSEEEEETTCCTTTTCEEESSHHHHHHHHHHH------HHHCSEEEEEECCC------SE--EEEE
T ss_pred hHHHHHHhc----CCCEEEEECCCCCCcCeEEeCCHHHHHHHHHHH------HhcCCcEEEEcCcC------Ce--EEEE
Confidence 455555544 346899999999999999999998887655421 01246899999996 53 6666
Q ss_pred EEEEe
Q psy9333 170 YVLVT 174 (308)
Q Consensus 170 yvLvt 174 (308)
-|+..
T Consensus 232 ~vl~~ 236 (364)
T 3i12_A 232 AVLGN 236 (364)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 66643
No 49
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=91.77 E-value=0.065 Score=49.64 Aligned_cols=76 Identities=13% Similarity=0.271 Sum_probs=23.5
Q ss_pred eeccccc-hhhHHHHHHHHHhCCCCeEEEcCCCCC-CCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 81 IPITFIL-PADYNMFVEEYRKNPASTWIMKPCGKS-QGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 81 ~P~T~~l-p~e~~~f~~~~~~~~~~~wI~KP~~~~-~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
.|++..+ +++..++.+.. +-.+|+||..++ .|+|+.++++.+++....+.. .....+++|+||+.
T Consensus 107 ~p~~~~~~~~~~~~~~~~~----~~P~vvKp~~~~~~g~Gv~~v~~~~el~~~~~~~-------~~~~~~lvEe~i~~-- 173 (365)
T 2z04_A 107 VPEFLVIKRDEIIDALKSF----KLPVVIKAEKLGYDGKGQYRIKKLEDANQVVKNH-------DKEESFIIEEFVKF-- 173 (365)
T ss_dssp CCCEEEC------------------CEEEECC-------------------------------------CEEEECCCC--
T ss_pred CCCEEEEcHHHHHHHHHhc----CCCEEEEEcCCCcCCCCeEEECCHHHHHHHHHHh-------ccCCCEEEEccCCC--
Confidence 3444433 34554454433 346899999999 999999999888877654321 12468999999973
Q ss_pred cccCccceeeEEEEEe
Q psy9333 159 LIGGKKFDLRLYVLVT 174 (308)
Q Consensus 159 Li~grKFDlR~yvLvt 174 (308)
|+ ++++.++..
T Consensus 174 ---g~--e~sv~~~~d 184 (365)
T 2z04_A 174 ---EA--EISCIGVRD 184 (365)
T ss_dssp ---SE--EEEEEEEEC
T ss_pred ---CE--EEEEEEEEC
Confidence 33 666666653
No 50
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=91.67 E-value=0.12 Score=47.86 Aligned_cols=116 Identities=19% Similarity=0.332 Sum_probs=63.6
Q ss_pred cCCCCceecccCCCccccchHHHHHHHHHHHHHHHhcCCCcccccCCCCCccccCCeeeccccchhhHH-----HHHHH-
Q psy9333 24 RMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYN-----MFVEE- 97 (308)
Q Consensus 24 ~l~~~Q~vNhfpg~~~lt~K~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~T~~lp~e~~-----~f~~~- 97 (308)
+|..-=.||..+-...+..|-..+..|.+. |-| +|+|..+..+-. .|++.
T Consensus 79 ~lr~p~~INd~~~q~~~~DK~~~~~iL~~~-------gIP-----------------tP~t~~~~rd~~~~~~~~~~e~~ 134 (330)
T 3t7a_A 79 KLRNPFVINDLNMQYLIQDRREVYSILQAE-------GIL-----------------LPRYAILNRDPNNPKECNLIEGE 134 (330)
T ss_dssp HHHCCEESBCSTHHHHHTBHHHHHHHHHHT-------TCC-----------------CCCEEEECCBTTBGGGSSEEECS
T ss_pred HHhCCceeCCHHHHHHHHHHHHHHHHHHHc-------CCC-----------------CCCEEEEeCCCCCccccceeccc
Confidence 455566778777777777777777666542 221 355555422110 11100
Q ss_pred --HHhC---CCCeEEEcCCCCC-----------CCCce-EEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccc
Q psy9333 98 --YRKN---PASTWIMKPCGKS-----------QGNGI-FLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLI 160 (308)
Q Consensus 98 --~~~~---~~~~wI~KP~~~~-----------~G~GI-~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi 160 (308)
...+ -+..+|.||..|+ .|.|- ++++....-....... ........+++|+||..
T Consensus 135 d~i~~~g~~l~kPfVeKPv~Gsdhni~iyyp~s~GgG~~RLfrki~n~sS~~~~~----~~vr~~~~~i~QEFI~~---- 206 (330)
T 3t7a_A 135 DHVEVNGEVFQKPFVEKPVSAEDHNVYIYYPTSAGGGSQRLFRKIGSRSSVYSPE----SNVRKTGSYIYEEFMPT---- 206 (330)
T ss_dssp SEEEETTEEEESSEEEEESBTTCCCCEEECCGGGTCCEEEEEEEETTEEEEEESC----CSCCSSSCEEEEECCCC----
T ss_pred hhhhhccccccCCeeEcccccccCcceeecccccCCchhhhhhhhCCcccccChh----hhhccCCcEEEEeccCC----
Confidence 0000 0245888888875 77777 5665432111100000 01134678999999975
Q ss_pred cCccceeeEEEEE
Q psy9333 161 GGKKFDLRLYVLV 173 (308)
Q Consensus 161 ~grKFDlR~yvLv 173 (308)
+|+ |+|+||+=
T Consensus 207 ~G~--DIRv~vVG 217 (330)
T 3t7a_A 207 DGT--DVKVYTVG 217 (330)
T ss_dssp SSE--EEEEEEES
T ss_pred CCc--eEEEEEEC
Confidence 574 99999985
No 51
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=91.64 E-value=0.11 Score=49.23 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=36.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-.+|+||..++.|+|+.++++.+++....+..............+++|+||+
T Consensus 141 g~PvvvKp~~~~gg~Gv~~v~~~~el~~a~~~~~~~~~~~g~~~~vlvEe~i~ 193 (412)
T 1vkz_A 141 SPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLA 193 (412)
T ss_dssp CSSEEEEESSCCSSCCEEEESSHHHHHHHHHHHHHTSSSTTCCSCEEEEECCC
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHhhccccCCCCeEEEEECCc
Confidence 45799999999999999999999888765432100000000123899999996
No 52
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=91.20 E-value=0.18 Score=48.20 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=36.2
Q ss_pred eEEEcCC-CCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 105 TWIMKPC-GKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 105 ~wI~KP~-~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
.+|+||. .|+.|+|+.++++.+++....+.. ....+++|+||+
T Consensus 173 P~VvKp~~~g~~G~Gv~~v~~~~el~~a~~~~--------~~~~~lvEe~i~ 216 (419)
T 4e4t_A 173 PGILKTARLGYDGKGQVRVSTAREARDAHAAL--------GGVPCVLEKRLP 216 (419)
T ss_dssp SEEEEESSSCCTTTTEEEECSHHHHHHHHHHT--------TTCCEEEEECCC
T ss_pred CEEEEecCCCCCCCceEEECCHHHHHHHHHhc--------CCCcEEEeecCC
Confidence 5899999 899999999999999988766532 346899999996
No 53
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=90.82 E-value=0.3 Score=48.25 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
.+..++.+.. +-.+|+||..++.|+|+.++++.+++....+.... ......++||+||+.
T Consensus 224 ~e~~~~~~~~----g~PvVvKp~~g~gg~Gv~~v~~~~el~~a~~~~~~----~~~~~~vlvEe~i~g 283 (554)
T 1w96_A 224 EDGLQKAKRI----GFPVMIKASEGGGGKGIRQVEREEDFIALYHQAAN----EIPGSPIFIMKLAGR 283 (554)
T ss_dssp HHHHHHHHHH----CSSEEEEETTCCTTTTEEEECSHHHHHHHHHHHHH----HSTTCCEEEEECCCS
T ss_pred HHHHHHHHHc----CCCEEEEECCCCCCceEEEECCHHHHHHHHHHHHh----hccCCCEEEEEecCC
Confidence 3444444443 44689999999999999999999888765542100 012468999999974
No 54
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=90.78 E-value=0.19 Score=49.81 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
.+..++.+.. +-.+|+||..+..|+|+.++++.+++....+.... ......+++|+||+.
T Consensus 218 ~ea~~~a~~i----gyPvVVKp~~ggGG~Gv~iv~~~~eL~~a~~~~~~----~~~~~~vlVEe~I~g 277 (540)
T 3glk_A 218 DEGLEAAERI----GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQS----EIPGSPIFLMKLAQH 277 (540)
T ss_dssp HHHHHHHHHH----CSSEEEEETTCC----EEEECSTTTHHHHHHHHHH----HSTTCCEEEEECCSS
T ss_pred HHHHHHHHhc----CCcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHh----hccCCCEEEEEecCC
Confidence 3444454444 45689999999999999999999888765543110 012468999999975
No 55
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=90.75 E-value=0.33 Score=48.67 Aligned_cols=61 Identities=11% Similarity=0.099 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 89 ADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 89 ~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
++..++.++. +-.+|+||..+..|+|+.++++.+++....+.... ......++||+||+.|
T Consensus 234 eea~~~a~~i----GyPvVVKp~~GgGGkGv~iV~s~eEL~~a~~~a~~----~~~~~~vlVEeyI~g~ 294 (587)
T 3jrx_A 234 DEGLEAAERI----GFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQS----EIPGSPIFLMKLAQHA 294 (587)
T ss_dssp HHHHHHHHHH----CSSEEEEETTCCSSSSEEEECSTTTHHHHHHHHHH----HSTTCCEEEEECCCSC
T ss_pred HHHHHHHHhc----CCeEEEEeCCCCCCCCeEEeCCHHHHHHHHHHHHh----hccCCCEEEEEecCCC
Confidence 3444454444 45689999999999999999999888765543110 0124689999999864
No 56
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=90.64 E-value=0.25 Score=46.32 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=37.2
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-.+|+||..+..|.|+.++++.+++....+... .....++||+||+
T Consensus 185 g~PvvVKP~~g~ss~Gv~~v~~~~el~~a~~~~~------~~~~~vlVEe~I~ 231 (367)
T 2pvp_A 185 NFPFIVKPSNAGSSLGVNVVKEEKELIYALDSAF------EYSKEVLIEPFIQ 231 (367)
T ss_dssp CSCEEEEESSCCTTTTCEEESSTTSHHHHHHHHT------TTCSCEEEEECCT
T ss_pred CCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHH------hcCCcEEEEeCCC
Confidence 4579999999999999999999888877654321 1246899999996
No 57
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=90.45 E-value=0.3 Score=52.25 Aligned_cols=68 Identities=7% Similarity=0.165 Sum_probs=37.1
Q ss_pred eccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 82 PITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 82 P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
|++..+ +.+..++.++. +-.+|+||..+..|+|+.++.+.+++....+... ......+++||+||+.+
T Consensus 690 P~~~~~~s~eea~~~~~~i----g~PvvVKP~~~~gG~Gv~iv~~~~el~~~~~~a~----~~~~~~~vlvEefI~g~ 759 (1073)
T 1a9x_A 690 PANATVTAIEMAVEKAKEI----GYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAV----SVSNDAPVLLDHFLDDA 759 (1073)
T ss_dssp CCEEECCSHHHHHHHHHHH----CSSEEEEC-------CEEEECSHHHHHHHHHHCC------------EEEBCCTTC
T ss_pred CCceEECCHHHHHHHHHHc----CCCEEEEECCCCCCCCeEEECCHHHHHHHHHHHH----hhCCCCcEEEEEccCCC
Confidence 444443 34555555544 3468999999999999999999999887765421 11134689999999754
No 58
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=90.35 E-value=0.062 Score=54.87 Aligned_cols=54 Identities=15% Similarity=0.222 Sum_probs=3.2
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
-..|+||..+..|+|+.++.+.+++....+..............+++|+||+.|
T Consensus 153 yPvVvKp~~ggggkGv~iv~~~~el~~a~~~~~~ea~~~fg~~~vlvEe~I~g~ 206 (681)
T 3n6r_A 153 YPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQP 206 (681)
T ss_dssp --------------------------------------------------CCSC
T ss_pred CcEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHhCCCCcEEEEeccCCC
Confidence 457999999999999999999888876554321100111234689999999876
No 59
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=90.31 E-value=0.22 Score=46.76 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=43.0
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEe
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVT 174 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvt 174 (308)
+-.+|+||..+..|.||.++++.+++....+... .....++||+||+ |+ ++++-|+..
T Consensus 188 g~PvvVKP~~ggss~GV~~v~~~~eL~~a~~~a~------~~~~~vlVEe~I~------G~--E~~v~vl~~ 245 (373)
T 3lwb_A 188 GLPVFVKPARGGSSIGVSRVSSWDQLPAAVARAR------RHDPKVIVEAAIS------GR--ELECGVLEM 245 (373)
T ss_dssp CSCEEEEESBCSTTTTCEEECSGGGHHHHHHHHH------TTCSSEEEEECCE------EE--EEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCCEEEeCCHHHHHHHHHHHH------hcCCCEEEeCCCC------Ce--EEEEEEEEC
Confidence 3468999999999999999999998876554321 1246899999996 54 566666653
No 60
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=90.14 E-value=0.28 Score=46.16 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=41.9
Q ss_pred CCe-EEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEEe
Q psy9333 103 AST-WIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVT 174 (308)
Q Consensus 103 ~~~-wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvt 174 (308)
+-. +|+||..+..|.||.++++.+++....+... .....++||+||+ |+ ++++-|+..
T Consensus 179 g~P~vvVKP~~ggss~Gv~~v~~~~eL~~a~~~a~------~~~~~vlVEe~I~------G~--E~~v~vl~~ 237 (372)
T 3tqt_A 179 GTSELFVKAVSLGSSVATLPVKTETEFTKAVKEVF------RYDDRLMVEPRIR------GR--EIECAVLGN 237 (372)
T ss_dssp ---CEEEEESSCCSGGGEEEECSHHHHHHHHHHHT------TTCSCEEEEECCC------SE--EEEEEEEES
T ss_pred CCCeEEEEECCCCCCCCEEEECCHHHHHHHHHHHH------hcCCCEEEECCCC------CE--EEEEEEEeC
Confidence 345 8999999999999999999998877654321 1246899999996 54 566666554
No 61
>2io8_A Bifunctional glutathionylspermidine synthetase/amidase; ligase, hydrolase; HET: ADP; 2.10A {Escherichia coli} SCOP: c.30.1.7 d.3.1.15 d.142.1.8 PDB: 2io7_A* 2io9_A* 2ioa_A* 2iob_A 3o98_A*
Probab=89.30 E-value=0.25 Score=49.89 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=32.3
Q ss_pred eEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCc
Q psy9333 105 TWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPL 158 (308)
Q Consensus 105 ~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~Pl 158 (308)
-||+||..|..|.||.+...-.+.. ++. ........+|.|+|+.-|-
T Consensus 529 ~yV~KPi~gReG~nV~i~~~~~~~~---~~~----~~~y~~~~~IyQe~~~lp~ 575 (619)
T 2io8_A 529 GYAVKPIAGRCGSNIDLVSHHEEVL---DKT----SGKFAEQKNIYQQLWCLPK 575 (619)
T ss_dssp CEEEEETTCCTTTTCEEECTTSCEE---EEC----CCTTTTSCEEEEECCCCCE
T ss_pred CEEEccCCCCCCCCEEEEeCCChhH---hhc----cccccCCCeEEEEecCCCC
Confidence 4999999999999999997522211 110 0112347899999998763
No 62
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=88.49 E-value=0.26 Score=46.66 Aligned_cols=52 Identities=17% Similarity=0.269 Sum_probs=31.5
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCC---CC--CCcccccceEEeeccC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKT---PF--NPILVKESYVISKYID 155 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~---~~--~~~~~~~~~VvQkYI~ 155 (308)
-.+|+||..++.|+|+.++++.+++.+..+.... .. ........+++|+||+
T Consensus 146 ~P~vvKp~~g~gs~Gv~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~~~~lvEe~i~ 202 (425)
T 3vot_A 146 YPLVVKPVNGFSSQGVVRVDDRKELEEAVRKVEAVNQRDLNRFVHGKTGIVAEQFID 202 (425)
T ss_dssp SSEEEEESCC-----CEEECSHHHHHHHHHHHHHHTTSSHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCCCceEechHHHHHHHHHHHHhhhhhhhhhhccCCCcEEEEEEec
Confidence 3589999999999999999999888765432100 00 0011346799999996
No 63
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=87.54 E-value=0.28 Score=52.99 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=30.6
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
-.+|+||..+..|+|+.++++.+++....+..............+++|+||+.|
T Consensus 156 yPvVVKP~~GgGg~Gv~vv~s~eeL~~a~~~a~~~a~~~fg~~~vlVEeyI~G~ 209 (1150)
T 3hbl_A 156 FPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSEVYIERYIDNP 209 (1150)
T ss_dssp SSEEEECCC-------CEECCSSSCTHHHHSSSSSCC------CBEEECCCSSC
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEccCCC
Confidence 358999999999999999999888877665432111111225689999999876
No 64
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=86.33 E-value=0.38 Score=43.75 Aligned_cols=44 Identities=25% Similarity=0.509 Sum_probs=30.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccCccceeeEEEEE
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLV 173 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLv 173 (308)
+..+|+||..++.|+|+.++++ ....+++|+||+ |+ ++++.++.
T Consensus 133 ~~P~vvKP~~g~gs~Gv~~v~~-------------------~~~~~lvEe~I~------G~--e~sv~v~~ 176 (305)
T 3df7_A 133 DCKFIIKPRTACAGEGIGFSDE-------------------VPDGHIAQEFIE------GI--NLSVSLAV 176 (305)
T ss_dssp SSSEEEEESSCC----CBCCSS-------------------CCTTEEEEECCC------SE--EEEEEEEE
T ss_pred CCCEEEEeCCCCCCCCEEEEec-------------------CCCCEEEEeccC------Cc--EEEEEEEe
Confidence 3459999999999999998876 236899999996 44 56666664
No 65
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=85.76 E-value=0.65 Score=49.70 Aligned_cols=69 Identities=9% Similarity=0.023 Sum_probs=47.0
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+|+++.+ +.+..++.+.. +-.+|+||..+..|+|+.++.+.+++....+... .......++||+||.-+
T Consensus 143 vp~~~~v~~~~ea~~~~~~i----g~PvVvKp~~~~Gg~Gv~iv~~~eel~~~~~~~~----~~~~~~~vlvEe~I~G~ 213 (1073)
T 1a9x_A 143 TARSGIAHTMEEALAVAADV----GFPCIIRPSFTMGGSGGGIAYNREEFEEICARGL----DLSPTKELLIDESLIGW 213 (1073)
T ss_dssp CCSEEEESSHHHHHHHHHHH----CSSEEEEETTCCTTTTCEEESSHHHHHHHHHHHH----HHCTTSCEEEEECCTTS
T ss_pred CCCEEEECCHHHHHHHHHHc----CCCEEEEECCCCCCCceEEeCCHHHHHHHHHHHH----hhCCCCcEEEEEccCCC
Confidence 3555554 34555555444 4568999999999999999999988877654210 00123589999999754
No 66
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=85.42 E-value=1.2 Score=41.43 Aligned_cols=52 Identities=12% Similarity=0.184 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHhCCCCeEEEcCCC-CCCCCceEEEcC--chHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 88 PADYNMFVEEYRKNPASTWIMKPCG-KSQGNGIFLINK--LSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~wI~KP~~-~~~G~GI~l~~~--~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
++++.++.++. +-..|+||.. |+.|+|+.++++ .+++.... .. .+|+++||+
T Consensus 103 ~~e~~~~~~~~----G~P~VvKp~~~G~~GkGv~~v~~~~~~el~~a~----------~~--~vivEe~I~ 157 (355)
T 3eth_A 103 RSEWPAVFDRL----GELAIVKRRTGGYDGRGQWRLRANETEQLPAEC----------YG--ECIVEQGIN 157 (355)
T ss_dssp GGGHHHHHHHH----CSEEEEEESSSCCTTTTEEEEETTCGGGSCGGG----------TT--TEEEEECCC
T ss_pred HHHHHHHHHHc----CCCEEEEecCCCCCCCeEEEEcCCCHHHHHHHh----------hC--CEEEEEccC
Confidence 46677776665 4578999997 489999999999 88775421 11 699999996
No 67
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=85.24 E-value=0.2 Score=46.40 Aligned_cols=43 Identities=23% Similarity=0.496 Sum_probs=20.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
+-.-|+||..++.|+|+.++++ +++....+. .. ..+|||+||.
T Consensus 125 ~~PviVKp~~g~ggkG~~~v~~-eel~~~~~~--------~~-~~~IiEEfI~ 167 (320)
T 2pbz_A 125 DELYFVRIEGPRGGSGHFIVEG-SELEERLST--------LE-EPYRVERFIP 167 (320)
T ss_dssp SCCEEEECC------------C-EECSCCCC-------------CCEEEECCC
T ss_pred CCcEEEEECCCCCCCCEEEECh-HHHHHHHHh--------cC-CCEEEEeeec
Confidence 4568999999999999999999 887542211 01 5799999996
No 68
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=85.13 E-value=0.19 Score=54.38 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=4.6
Q ss_pred CCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCC
Q psy9333 103 ASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNP 157 (308)
Q Consensus 103 ~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~P 157 (308)
+-.+|+||..+..|+|+.++++.+++....+..............+++|+||+.+
T Consensus 171 gyPvVVKp~~g~GG~Gv~iv~s~eEL~~a~~~~~~~a~~~fg~~~vlVEefI~gg 225 (1165)
T 2qf7_A 171 GYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERA 225 (1165)
T ss_dssp -------------------------------------------------CCCSSE
T ss_pred CCCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhhcCCCcEEEEEeccCC
Confidence 3468999999999999999999888876554321100011124679999999753
No 69
>2vob_A Trypanothione synthetase; ligase; 2.3A {Leishmania major} PDB: 2vps_A 2vpm_A
Probab=84.70 E-value=0.62 Score=47.22 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=17.6
Q ss_pred eEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCCCccccC
Q psy9333 105 TWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLIGG 162 (308)
Q Consensus 105 ~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~PlLi~g 162 (308)
-||+||..|..|.||.+...-.++.. +. ......+.+|+|+|+.-|- .+|
T Consensus 544 ~yV~KPi~gReG~nV~I~~~~~~~~~--~~-----~g~y~~~~~IyQe~~~lp~-f~~ 593 (652)
T 2vob_A 544 GYAKKPIVGRVGSNVIITSGDGVVHA--ES-----GGKYGKRNMIYQQLFELKK-QDD 593 (652)
T ss_dssp CEEEEECC----------------------------------CEEEEECCC--C-BTT
T ss_pred CeEeccCCCCCCCCEEEEcCCchhhh--hc-----ccccCCCCeEEEecccCCc-cCC
Confidence 49999999999999999865332211 10 0112457899999998663 444
No 70
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=84.69 E-value=0.63 Score=42.88 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=28.2
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYID 155 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~ 155 (308)
-.+|+||..++.|+|+.++++.+++.. ....+++|+||.
T Consensus 126 ~P~vvKp~~g~g~~gv~~v~~~~~~~~-------------~~~~~~~ee~i~ 164 (363)
T 4ffl_A 126 PPYFVKPPCESSSVGARIIYDDKDLEG-------------LEPDTLVEEYVE 164 (363)
T ss_dssp SCEEEECSSCCTTTTCEEEC------C-------------CCTTCEEEECCC
T ss_pred CCEEEEECCCCCCcCeEEeccHHHhhh-------------hccchhhhhhcc
Confidence 468999999999999999998776542 346789999985
No 71
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=81.85 E-value=0.77 Score=43.06 Aligned_cols=52 Identities=21% Similarity=0.193 Sum_probs=32.6
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccC-CCCCCcccccceEEeeccC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESK-TPFNPILVKESYVISKYID 155 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~VvQkYI~ 155 (308)
...|+||..++.|+|+.++++.+++....+... ...........+|||+||+
T Consensus 151 ~PvVVK~~~~a~GkGv~v~~s~ee~~~a~~~~~~~~~~~~~~~~~viIEEfl~ 203 (361)
T 2r7k_A 151 GTVIVKFPGARGGRGYFIASSTEEFYKKAEDLKKRGILTDEDIANAHIEEYVV 203 (361)
T ss_dssp SCEEEECSCCCC---EEEESSHHHHHHHHHHHHHTTSCCHHHHHHCEEEECCC
T ss_pred CCEEEeeCCCCCCCCEEEECCHHHHHHHHHHHHhccccccCCCCeEEEEeccc
Confidence 468999999999999999999988876543210 0000000124799999997
No 72
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=76.14 E-value=0.57 Score=50.92 Aligned_cols=53 Identities=8% Similarity=0.183 Sum_probs=0.6
Q ss_pred CeEEEcCCCCCCCCceEEEcCchHHHhhhhccCCCCCCcccccceEEeeccCC
Q psy9333 104 STWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDN 156 (308)
Q Consensus 104 ~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI~~ 156 (308)
--.|+||..+..|+|+.++.+.+++....+..............+++|+||+.
T Consensus 181 yPvVVKP~~GgGGkGV~iv~s~eEL~~a~~~~~~~a~~~~~~~~vlVEeyI~G 233 (1236)
T 3va7_A 181 YPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGVFMERFVNN 233 (1236)
T ss_dssp ----------------------------------------------------C
T ss_pred CCEEEEeCCCCCCCCEEEECCHHHHHHHHHHHHHHHHhccCCCcEEEeeccCC
Confidence 35799999999999999999988887655432110001123467999999985
No 73
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=72.63 E-value=1.8 Score=37.52 Aligned_cols=71 Identities=15% Similarity=0.183 Sum_probs=41.7
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCC-----CCCCceEE-EcCchHHHhhhhccCCC---CCCcccccceE
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGK-----SQGNGIFL-INKLSKLKKWSRESKTP---FNPILVKESYV 149 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~-----~~G~GI~l-~~~~~~i~~~~~~~~~~---~~~~~~~~~~V 149 (308)
.|+++.. +.+..++.... +-..++||..+ +.|.|+.+ +++.+++....+..... .........++
T Consensus 36 ~p~~~~~~~~~ea~~~a~~l----g~PvvvKp~~~~~~~r~~~gGv~~~v~~~~el~~a~~~~~~~~~~~~~~~~~~~vl 111 (238)
T 1wr2_A 36 VPEEKLAKTLDEALEYAKEI----GYPVVLKLMSPQILHKSDAKVVMLNIKNEEELKKKWEEIHENAKKYRPDAEILGVL 111 (238)
T ss_dssp CCCCEEESSHHHHHHHHHHH----CSSEEEEEECTTCCCHHHHTCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCCCEEE
T ss_pred CCCeEEeCCHHHHHHHHHHh----CCCEEEEEccCCCCcCCccCCEEEeCCCHHHHHHHHHHHHHhhhhhCCCCccceEE
Confidence 3555544 34444444443 34679999987 66778888 68888887654321000 00011136799
Q ss_pred EeeccC
Q psy9333 150 ISKYID 155 (308)
Q Consensus 150 vQkYI~ 155 (308)
||+||.
T Consensus 112 VEe~i~ 117 (238)
T 1wr2_A 112 VAPMLK 117 (238)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999996
No 74
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus KT}
Probab=69.90 E-value=6.1 Score=37.50 Aligned_cols=101 Identities=16% Similarity=0.238 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCCceEEEcCchHHHhhhhccCC---CCCCcccccceEEeeccCCCccccCccceeeEEEEEeeec
Q psy9333 101 NPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKT---PFNPILVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFR 177 (308)
Q Consensus 101 ~~~~~wI~KP~~~~~G~GI~l~~~~~~i~~~~~~~~~---~~~~~~~~~~~VvQkYI~~PlLi~grKFDlR~yvLvts~~ 177 (308)
....--|+|.++|.=|-||..+.+.+++..+-+.... .......-...|||+-|..=-.++|- | ..
T Consensus 275 ~~~PfV~VKADaGTYGMGImtV~s~~ev~~LNrK~RnKM~~~Keg~~v~~VIIQEGV~T~E~~~~a---------v--AE 343 (432)
T 3k1t_A 275 KQEPFVIVKADAGTYGMGIMTVKSADDVRDLNRKQRNKMSVVKEGLKVSEVILQEGVYTFEHLKDA---------V--AE 343 (432)
T ss_dssp CSCCCEEEEEECGGGCEEEEEESSGGGGSSCCHHHHHHHHCSSSSSCCCEEEEEECCCCCEEETTE---------E--EE
T ss_pred CCCceEEEEcCCCCCCceEEEecCHHHHHHHhHHhhhhhhhccCCCccceEEEecCcchhhhhCCc---------c--cc
Confidence 3455678999999999999999999999865432110 01223455789999998654445543 1 23
Q ss_pred CcEEEEEcC----ceEeecCCCCCCCcccccccccCCccccc
Q psy9333 178 PLKCYLFKL----GFCRFCTVKYDKNITELDNMYVHLTNVSV 215 (308)
Q Consensus 178 Pl~vy~y~~----g~vR~a~~~Y~~~~~~~~~~~~HLTN~si 215 (308)
|+ ||+-+. |+-|.-++.= ..+|++.+-||+.-.+.
T Consensus 344 PV-VYmid~~vvGgFyRvh~~rg--~dENLNapGm~F~plaf 382 (432)
T 3k1t_A 344 PV-IYMMDHFVVGGFYRVHTSRG--ADENLNAPGMHFEPLTF 382 (432)
T ss_dssp EE-EEEETTEEEEEEEEEESCCS--TTTTTSCCTTCEEEEEC
T ss_pred ce-EEEECCEEEEEEEEecCCCC--CccCCCCCCCEeeeccc
Confidence 53 355443 5667766655 34688888888766554
No 75
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=60.08 E-value=12 Score=35.40 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=42.5
Q ss_pred eeccccc--hhhHHHHHHHHHhCCCCeEEEcCCCCCCCC----ceEEEcCchHHHhhhhccCCCCCCcccccceEEeecc
Q psy9333 81 IPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGN----GIFLINKLSKLKKWSRESKTPFNPILVKESYVISKYI 154 (308)
Q Consensus 81 ~P~T~~l--p~e~~~f~~~~~~~~~~~wI~KP~~~~~G~----GI~l~~~~~~i~~~~~~~~~~~~~~~~~~~~VvQkYI 154 (308)
+|++... ++|..+..++. +..+++||.....|+ |+.+..+.+++.+..++..............+||+++
T Consensus 19 vp~~~~~~s~eea~~aa~~l----G~PvVvKa~~~~ggkg~~GGV~l~~s~ee~~~a~~~~~~~~~~g~~~~~vlVEe~v 94 (397)
T 3ufx_B 19 VPPGKVAYTPEEAKRIAEEF----GKRVVIKAQVHVGGRGKAGGVKLADTPQEAYEKAQAILGMNIKGLTVKKVLVAEAV 94 (397)
T ss_dssp CCCEEEESSHHHHHHHHHHH----TSCEEEEECCSSSCTTTTTCEEEESSHHHHHHHHHHHTTCEETTEECCCEEEEECC
T ss_pred CCCeEEECCHHHHHHHHHHc----CCCEEEEEccccCCCCccceEEEeCCHHHHHHHHHHhhhhhccCCccceEEEEEee
Confidence 3454444 55665555554 356999998743333 9999999888877654321100001123578889888
Q ss_pred C
Q psy9333 155 D 155 (308)
Q Consensus 155 ~ 155 (308)
.
T Consensus 95 ~ 95 (397)
T 3ufx_B 95 D 95 (397)
T ss_dssp C
T ss_pred c
Confidence 4
No 76
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=49.34 E-value=20 Score=33.78 Aligned_cols=64 Identities=8% Similarity=0.119 Sum_probs=38.8
Q ss_pred hhhHHHHHHHHHhCCCC-eEEEcCC--CCCCCCc---------eEEEcCchHHHhhhhccCCCC----C---Ccccccce
Q psy9333 88 PADYNMFVEEYRKNPAS-TWIMKPC--GKSQGNG---------IFLINKLSKLKKWSRESKTPF----N---PILVKESY 148 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~-~wI~KP~--~~~~G~G---------I~l~~~~~~i~~~~~~~~~~~----~---~~~~~~~~ 148 (308)
++|..+..++. +. ..++||. .|.||+| +.+..+.+++....++..... + ........
T Consensus 28 ~~ea~~~a~~l----g~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~~l~~~~~t~q~g~~g~~~~~v 103 (395)
T 2fp4_B 28 ANEALEAAKRL----NAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLATKQTPKEGVKVNKV 103 (395)
T ss_dssp HHHHHHHHHHH----TCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHTTTTSEEECTTSCTTCEECCCE
T ss_pred HHHHHHHHHHc----CCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHHHhhcchhhhccCCCCCccceE
Confidence 45555555444 33 4699995 4556654 999999998887665432110 0 01112468
Q ss_pred EEeeccC
Q psy9333 149 VISKYID 155 (308)
Q Consensus 149 VvQkYI~ 155 (308)
+||+|+.
T Consensus 104 lVEe~v~ 110 (395)
T 2fp4_B 104 MVAEALD 110 (395)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999985
No 77
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=48.09 E-value=24 Score=33.17 Aligned_cols=64 Identities=11% Similarity=0.255 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHhCCCCe-EEEcCCCC--CCCC--ceEEEcCchHHHhhhhccCCC----CC---CcccccceEEeeccC
Q psy9333 88 PADYNMFVEEYRKNPAST-WIMKPCGK--SQGN--GIFLINKLSKLKKWSRESKTP----FN---PILVKESYVISKYID 155 (308)
Q Consensus 88 p~e~~~f~~~~~~~~~~~-wI~KP~~~--~~G~--GI~l~~~~~~i~~~~~~~~~~----~~---~~~~~~~~VvQkYI~ 155 (308)
++|..+..++. +.. .++||... +||. |+.+..+.+++.+..++.... .+ ........+||+|+.
T Consensus 28 ~eea~~aa~~l----G~P~vVvK~~~~~ggrg~~gGV~l~~s~eel~~a~~~~~~~~~~t~q~g~~g~~~~~vlVEe~v~ 103 (388)
T 2nu8_B 28 PREAEEAASKI----GAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATD 103 (388)
T ss_dssp HHHHHHHHHHH----CSSCEEEEECCSSSCTTTTTCEEEECSHHHHHHHHHHHTTSEECCTTSCTTCEECCCEEEEECCC
T ss_pred HHHHHHHHHHh----CCCeEEEEEecCCCCCCccCCEEEECCHHHHHHHHHHHhhhhhhccccCCCCcccceEEEEEccc
Confidence 45555444443 234 79999875 3333 999999988887765432110 00 011235799999985
No 78
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=41.51 E-value=15 Score=34.55 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=21.0
Q ss_pred eeeeehhhcccCcccccc-CCCCceecccCCCc
Q psy9333 7 LKCIQTCRNIFSLELGYR-MNDNQIINHFPNHY 38 (308)
Q Consensus 7 ~~~~~~~~~~f~~~~~~~-l~~~Q~vNhfpg~~ 38 (308)
|..+....+.|+....-+ ..|+|++||.||..
T Consensus 30 w~ev~~~~~~~dl~W~~~~~~p~~~l~~~p~~~ 62 (380)
T 3tig_A 30 WKRLKRDNPKFNLMLGERNRLPFGRLGHEPGLV 62 (380)
T ss_dssp EEECCTTCSCCSEEECCSSSCCGGGSSCSTTCC
T ss_pred eEEeCCCCCceeEEEecCCCCCHHHhccCCCcc
Confidence 666655555565554432 56789999999863
Done!