RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9333
(308 letters)
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB:
3tii_A* 3tin_A*
Length = 380
Score = 221 bits (565), Expect = 2e-70
Identities = 62/281 (22%), Positives = 109/281 (38%), Gaps = 29/281 (10%)
Query: 11 QTCRNIFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLAEKSNE 70
+ LG+ Q++N++ +L RK LVK IK + E E
Sbjct: 45 GERNRLPFGRLGHEPGLVQLVNYYRGADKLCRKASLVKLIKTSPELTETC-TWFPESYVI 103
Query: 71 VPGRYI-----------HLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGI 119
P L P T + F ++ + WI K ++G GI
Sbjct: 104 YPTNEKTPAMRARNGLPDLANAPRTDEREEFRSSFNKKKENEEGNVWIAKSSSGAKGEGI 163
Query: 120 FLINKLSKLKKWSRESKTPFNPILVKESYVISKYIDNPLLI--GGKKFDLRLYVLVTSFR 177
+ + ++L + + +VI KY+++PLL+ G +KFD+R +VLV +
Sbjct: 164 LISSDATELLDFIDNQ---------GQVHVIQKYLESPLLLEPGHRKFDIRSWVLVDN-- 212
Query: 178 PLKCYLFKLGFCRFCTVKYDKNITELDNMYVHLTNVSVQKHGADY--NNIHGGKMNLQNL 235
YL++ G R + Y +M HLTN +QK + G +M +
Sbjct: 213 QYNIYLYREGVLRTSSEPYSDT--NFQDMTSHLTNHCIQKEHSKNYGRYEEGNEMFFEEF 270
Query: 236 RLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSR 276
YL ++ ++ N + I +I L + ++ K+
Sbjct: 271 NQYLVTSLNINLENSILCQIKEIIRVCLSCLEPAISTKYLP 311
Score = 27.3 bits (60), Expect = 7.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 288 KESYVISKYIDNPLLIGGKK 307
+ +VI KY+++PLL+
Sbjct: 180 GQVHVIQKYLESPLLLEPGH 199
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.7 bits (115), Expect = 2e-06
Identities = 48/305 (15%), Positives = 84/305 (27%), Gaps = 104/305 (34%)
Query: 36 NHYELTRKDLLVKNIKRYRKELEREGNPLAEK----SNEV------PGRYIHLDFIPITF 85
++ KD+L + + + K E+ + T
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71
Query: 86 ILPAD--YNMFVEEY-RKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESKTPFNPI 142
+ + FVEE R N ++M P E + P
Sbjct: 72 LSKQEEMVQKFVEEVLRIN--YKFLMSP--------------------IKTEQRQPSMMT 109
Query: 143 LVKESYVISKYIDNPLLIGGKKFDLRLYVLVTSFRP---LKCYLFKLGFCRFCTVKYDKN 199
+ Y DN + K++ V+ +P L+ L +L + KN
Sbjct: 110 RMYIEQRDRLYNDNQVF---AKYN------VSRLQPYLKLRQALLEL--------RPAKN 152
Query: 200 ITELDNMYVHLTNVSVQKHGADYNNIHG----GKMNLQNLRLYLESTRGKDITNKLFTNI 255
+ I G GK + L+ + K+ I
Sbjct: 153 VL-----------------------IDGVLGSGKTWVA-----LDVCLSYKVQCKMDFKI 184
Query: 256 SWL----------IVHSLKSVSYIMAKKWSRESKTPFNPILVKES-------YVISKYID 298
WL ++ L+ + Y + W+ S N L S + SK +
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 299 NPLLI 303
N LL+
Sbjct: 245 NCLLV 249
Score = 46.4 bits (109), Expect = 9e-06
Identities = 60/333 (18%), Positives = 104/333 (31%), Gaps = 99/333 (29%)
Query: 7 LKC--IQTCRN--IFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELERE-- 60
L C + T R + + +H K LL+K + ++L RE
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 61 -GNPL-----AEKSNEVPGR---YIHLDFIPITFILPADYNMFV-EEYRKN-------PA 103
NP AE + + H++ +T I+ + N+ EYRK P
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 104 STWIMKP------CGKSQGNGIFLINKLSK---LKKWSRESKTPFNPILVKESYVISKYI 154
S I + + + ++NKL K ++K +ES + S Y+
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST----------ISIPSIYL 433
Query: 155 DNPLLIGGKKFDLRLYV---LVTSFRPLKCYLFKLGFCRFCTVKYDKNITELDN-MYVHL 210
+ L K + + +V + K + D LD Y H+
Sbjct: 434 E--LK---VKLENEYALHRSIVDHYNIPKTFD-----------SDDLIPPYLDQYFYSHI 477
Query: 211 TNVSVQKHGADYNNIHGGKMNLQNLRLYLESTRGKDITNKLFTNISWL---IVHSLKSVS 267
G + H L+N+ + +F + +L I H +
Sbjct: 478 --------G--H---H-----LKNIEHPERM----TLFRMVFLDFRFLEQKIRHDSTA-- 513
Query: 268 YIMAKKWSRESKTPFNPILVKESYVISKYI-DN 299
W+ N + + Y YI DN
Sbjct: 514 ------WNASGSI-LNTLQQLKFY--KPYICDN 537
Score = 43.3 bits (101), Expect = 7e-05
Identities = 55/355 (15%), Positives = 106/355 (29%), Gaps = 113/355 (31%)
Query: 8 KCIQTCRN--IFSLELGYRMNDNQIINHFPNHYELTRKDLLVKNIKRYRKELEREGNPLA 65
+ Q ++ + NDNQ+ F Y ++R +++ EL N L
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQV---FAK-YNVSRLQP-YLKLRQALLELRPAKNVLI 155
Query: 66 E------KS---NEVPGRYIHLDFIPITFILPADYNMFVEEYRKNPASTWI-MKPCGKSQ 115
+ K+ +V + + + +F W+ +K C +
Sbjct: 156 DGVLGSGKTWVALDV------CLSYKVQCKMD--FKIF-----------WLNLKNCNSPE 196
Query: 116 GNGIFLINKLSKL-----KKWSRESKTPFNPILVKES-------YVISKYIDNPLLI--- 160
++ L KL W+ S N L S + SK +N LL+
Sbjct: 197 T----VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 161 -----GGKKFDLRLYVLVTS-FRPLKCYLFKLGFCRFCTVKYDKNIT--ELDNMYVHLTN 212
F+L +L+T+ F+ + +L + +T E+ ++ + +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 213 VSVQK--HGADYNN----------IHGGKMNLQNLRLY----LESTRGKDITN------- 249
Q N I G N + L + +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 250 KLF---------TNIS-------W---------LIVHSLKSVSYIMAKKWSRESK 279
K+F +I W ++V+ L S + +K +ES
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKEST 425
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.56
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 6/28 (21%)
Query: 122 INKL-SKLKKWSRESKTPFNPIL-VKES 147
+ KL + LK ++ +S P L +K +
Sbjct: 22 LKKLQASLKLYADDSA----PALAIKAT 45
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia
coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Length = 316
Score = 30.7 bits (70), Expect = 0.59
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 79 DFIPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINK 124
D P T + A F E++ I+KP G IF + +
Sbjct: 133 DLTPETLVTRNKAQLKAFWEKHSD-----IILKPLDGMGGASIFRVKE 175
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 2.1
Identities = 43/242 (17%), Positives = 72/242 (29%), Gaps = 80/242 (33%)
Query: 77 HLDFIPITFILPADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSK--LKKWSRE 134
+ + P T + P+ +E P+ M I+ L++ ++ + +
Sbjct: 311 YEAY-PNTSLPPSILEDSLENNEGVPSP---M-----------LSISNLTQEQVQDYVNK 355
Query: 135 SKTPFNPILVKESYV-ISKYIDNPLLIGGKKFDL-----RLYVLVTSFRPLKC------- 181
N L V IS L+ G K + LY L + R K
Sbjct: 356 ----TNSHLPAGKQVEIS------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS 405
Query: 182 -YLF---KLGF-CRFCTV------KYDKNITELDNMYVHLTNVSVQKHGAD-----YNNI 225
F KL F RF V ++L + L +V + D Y +
Sbjct: 406 RIPFSERKLKFSNRFLPVASPFHSHLLVPASDL--INKDLVKNNVSFNAKDIQIPVY-DT 462
Query: 226 HGGKMNLQNLRLYLESTRGKDITNKLFTNISWLIVHSLKSVSYIMAKKWSRESKTPFNPI 285
G +L+ L I+ ++ I L V W ++ I
Sbjct: 463 FDGS-DLRVLS--------GSISERIVDCIIRLPVK------------WETTTQFKATHI 501
Query: 286 LV 287
L
Sbjct: 502 LD 503
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.428
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,689,825
Number of extensions: 270098
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 512
Number of HSP's successfully gapped: 16
Length of query: 308
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 215
Effective length of database: 4,105,140
Effective search space: 882605100
Effective search space used: 882605100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)