RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9333
         (308 letters)



>d1gsaa2 d.142.1.1 (A:123-314) Prokaryotic glutathione synthetase,
           C-domain {Escherichia coli [TaxId: 562]}
          Length = 192

 Score = 29.0 bits (64), Expect = 0.47
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 79  DFIPITFIL--PADYNMFVEEYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWSRESK 136
           D  P T +    A    F E++        I+KP     G  IF + +         E+ 
Sbjct: 11  DLTPETLVTRNKAQLKAFWEKHSD-----IILKPLDGMGGASIFRVKEGDPNLGVIAETL 65

Query: 137 TPFNPILVKESYVISKYIDNP---LLIGGK 163
           T            +    D     L++ G+
Sbjct: 66  TEHGTRYCMAQNYLPAIKDGDKRVLVVDGE 95


>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 243

 Score = 25.6 bits (56), Expect = 6.8
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 157 PLLIGGKKFDLRLYV 171
           P +I G+ +  RL V
Sbjct: 2   PFVIAGRTYGSRLLV 16


>d1nc5a_ a.102.1.6 (A:) Hypothetical protein YteR {Bacillus subtilis
           [TaxId: 1423]}
          Length = 363

 Score = 25.5 bits (55), Expect = 8.4
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 38  YELTRKDLLVKNIKRYRKELEREGNPLAEKSNEVPGRYIHLDFIPITFILPADYNM-FVE 96
           +E T +       KRY +  +   + L + +  +  R   LD I    IL   Y     E
Sbjct: 44  WEATGE-------KRYFEYAKAYADLLIDDNGNLLFRRDELDAIQAGLILFPLYEQTKDE 96

Query: 97  EYRKNPASTWIMKPCGKSQGNGIFLINKLSKLKKWS 132
            Y K       +         G F        + W 
Sbjct: 97  RYVKAAKRLRSLYGTLNRTSEGGFWHKDGYPYQMWL 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.140    0.428 

Gapped
Lambda     K      H
   0.267   0.0593    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,195,900
Number of extensions: 56520
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 6
Length of query: 308
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 223
Effective length of database: 1,240,546
Effective search space: 276641758
Effective search space used: 276641758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)