BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9334
(65 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U1H|A Chain A, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
pdb|3U1H|B Chain B, Crystal Structure Of Ipmdh From The Last Common Ancestor
Of Bacillus
Length = 390
Score = 64.3 bits (155), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 10 LGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + +AK YP ++ E M+VDN MQ++ NP QFDV+V N++G+I+ + AS I GS
Sbjct: 224 VAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGS 279
>pdb|1V5B|A Chain A, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|B Chain B, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|C Chain C, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|D Chain D, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|E Chain E, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|F Chain F, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|G Chain G, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
pdb|1V5B|H Chain H, The Structure Of The Mutant, S225a And E251l, Of 3-
Isopropylmalate Dehydrogenase From Bacillus Coagulans
Length = 366
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 40/56 (71%)
Query: 10 LGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + AK YP ++ M+VD+ MQ+++NP QFDV+V N++G+I+ +LAS I GS
Sbjct: 203 IAEETAKKYPDVELSHMLVDSTAMQLIANPGQFDVIVTENMFGDILSDLASVITGS 258
>pdb|1V53|A Chain A, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
pdb|1V53|B Chain B, The Crystal Structure Of 3-Isopropylmalate Dehydrogenase
From Bacillus Coagulans
Length = 366
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 10 LGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + AK YP ++ M+VD+ +MQ+++NP QFDV+V N++G+I+ + AS I GS
Sbjct: 203 IAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGS 258
>pdb|2AYQ|A Chain A, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
pdb|2AYQ|B Chain B, 3-Isopropylmalate Dehydrogenase From The Moderate
Facultative Thermophile, Bacillus Coagulans
Length = 366
Score = 60.5 bits (145), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/56 (42%), Positives = 40/56 (71%)
Query: 10 LGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + AK YP ++ M+VD+ +MQ+++NP QFDV+V N++G+I+ + AS I GS
Sbjct: 203 IAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGS 258
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 16 KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64
K YP I +IVDN +MQ V+ PHQFDV+V P++YG I+ N+ + + G
Sbjct: 204 KEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIG 252
>pdb|1CNZ|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
pdb|1CNZ|B Chain B, 3-Isopropylmalate Dehydrogenase (Ipmdh) From Salmonella
Typhimurium
Length = 363
Score = 57.0 bits (136), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+AK YP ++ M +DN TMQ++ +P QFDV++ NL+G+I+ + + I GS
Sbjct: 212 VAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGS 263
>pdb|3VML|A Chain A, Chimera 3-Isopropylmalate Dehydrogenase Between Shewanella
Oneidensis Mr-1 (O) And Shewanella Benthica Db21 Mt-2
(M) From N-Terminal: 20% O Middle 70% M Residual 10% O
Length = 375
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 1 MPCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLAS 60
+ C + + + +AK YP ++ E + +DN TMQ++ P++FDVM+ NL+G+IV + +
Sbjct: 208 LACSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIA 267
Query: 61 DIKGS 65
+ GS
Sbjct: 268 MLTGS 272
>pdb|3VMK|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
pdb|3VMK|B Chain B, 3-Isopropylmalate Dehydrogenase From Shewanella Benthica
Db21 Mt-2
Length = 375
Score = 56.2 bits (134), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 1 MPCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLAS 60
+ C + + + +AK YP ++ E + +DN TMQ++ P++FDVM+ NL+G+IV + +
Sbjct: 208 LACSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIA 267
Query: 61 DIKGS 65
+ GS
Sbjct: 268 MLTGS 272
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 55.5 bits (132), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 16 KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64
K YP I +IVDN + Q V+ PHQFDV+V P+ YG I+ N+ + + G
Sbjct: 204 KEYPDIDVSSIIVDNASXQAVAKPHQFDVLVTPSXYGTILGNIGAALIG 252
>pdb|1X0L|A Chain A, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
pdb|1X0L|B Chain B, Crystal Structure Of Tetrameric Homoisocitrate
Dehydrogenase From An Extreme Thermophile, Thermus
Thermophilus
Length = 333
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64
+ +AK +P + + +IVDNC MQ+V P +FDV+V NL G+I+ +LA+ + G
Sbjct: 186 KEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 238
>pdb|3ASJ|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|C Chain C, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
pdb|3ASJ|D Chain D, Crystal Structure Of Homoisocitrate Dehydrogenase In
Complex With A Designed Inhibitor
Length = 334
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64
+ +AK +P + + +IVDNC MQ+V P +FDV+V NL G+I+ +LA+ + G
Sbjct: 187 KEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVG 239
>pdb|3R8W|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
pdb|3R8W|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase Isoform 2
From Arabidopsis Thaliana At 2.2 Angstrom Resolution
Length = 405
Score = 55.1 bits (131), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+A YP ++ M VDN MQ+V +P QFD +V N++G+I+ + AS I GS
Sbjct: 249 LASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGS 300
>pdb|1CM7|A Chain A, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
pdb|1CM7|B Chain B, 3-Isopropylmalate Dehydrogenase From Escherichia Coli
Length = 363
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+A YP ++ M +DN TMQ++ +P QFDV++ NL+G+I+ + + I GS
Sbjct: 212 IATEYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGS 263
>pdb|1A05|A Chain A, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
pdb|1A05|B Chain B, Crystal Structure Of The Complex Of 3-Isopropylmalate
Dehydrogenase From Thiobacillus Ferrooxidans With 3-
Isopropylmalate
Length = 358
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+A+ YP ++ M VDN MQ++ P QFDV++ N++G+I+ + AS + GS
Sbjct: 207 VARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGS 258
>pdb|3AH3|A Chain A, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|B Chain B, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|C Chain C, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
pdb|3AH3|D Chain D, Crystal Structure Of Lr5-1, 3-Isopropylmalate
Dehydrogenase Created By Directed Evolution
Length = 334
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64
+ +AK +P + + +IVDNC Q+V P ++DV+V NL G+I+ +LA+ + G
Sbjct: 187 KEVAKDFPLVNVQDIIVDNCATQLVMRPERYDVIVTTNLLGDILSDLAAGLMG 239
>pdb|3UDU|A Chain A, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|B Chain B, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|C Chain C, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|D Chain D, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|E Chain E, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|F Chain F, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|G Chain G, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
pdb|3UDU|H Chain H, Crystal Structure Of Putative 3-Isopropylmalate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIV-DNLAS 60
+AK Y I E M VDN MQIV NP FDVM+ NL+G+I+ D LA+
Sbjct: 209 VAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAA 256
>pdb|3VKZ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At Atmospheric Pressure
pdb|3VL2|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 160 Mpa
pdb|3VL3|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 340 Mpa
pdb|3VL4|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 410 Mpa
pdb|3VL6|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 580 Mpa
pdb|3VL7|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1 At 650 Mpa
pdb|3VMJ|A Chain A, 3-Isopropylmalate Dehydrogenase From Shewanella Oneidensis
Mr-1
Length = 375
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 1 MPCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLAS 60
+ C + + + +A +P ++ E + +DN TMQ++ P +FDVM+ NL+G+I+ + +
Sbjct: 208 LACSVLWRQVVEEVAVDFPDVELEHIYIDNATMQLLRRPDEFDVMLCSNLFGDILSDEIA 267
Query: 61 DIKGS 65
+ GS
Sbjct: 268 MLTGS 272
>pdb|4IWH|A Chain A, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
pdb|4IWH|B Chain B, Crystal Structure Of A 3-isopropylmalate Dehydrogenase
From Burkholderia Pseudomallei
Length = 363
Score = 50.1 bits (118), Expect = 3e-07, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
++K Y ++ M VDN MQ+ P QFDV+V N++G+I+ + AS + GS
Sbjct: 215 VSKEYADVELSHMYVDNAAMQLAKAPKQFDVIVTGNMFGDILSDEASMLTGS 266
>pdb|1VLC|A Chain A, Crystal Structure Of 3-isopropylmalate Dehydrogenase
(tm0556) From Thermotoga Maritima At 1.90 A Resolution
Length = 366
Score = 49.3 bits (116), Expect = 5e-07, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 35/52 (67%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+A+ YP ++ + VDN MQ++ P QFDV++ N++G+I+ + ++ + GS
Sbjct: 216 VAREYPDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGS 267
>pdb|1WPW|A Chain A, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
pdb|1WPW|B Chain B, Crystal Structure Of Ipmdh From Sulfolobus Tokodaii
Length = 336
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 20 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
K+++ +M VD +V NP FDV+V N+YG+I+ + AS I GS
Sbjct: 191 KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGS 236
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64
+ +A+ YP I+ +IVDN Q+V P QF+V+V N+ G+I+ +L S + G
Sbjct: 207 EQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIG 259
>pdb|1WAL|A Chain A, 3-Isopropylmalate Dehydrogenase (Ipmdh) Mutant (M219a)from
Thermus Thermophilus
Length = 345
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAAAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|3BLV|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 47.8 bits (112), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 7 YPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD--VMVMPNLYGNIVDNLASDI 62
+ N+ + ++K YP + E ++DN +++V+NP + V V PNLYG+I+ +L S +
Sbjct: 200 FVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGL 257
>pdb|3BLW|B Chain B, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|D Chain D, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|F Chain F, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|H Chain H, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|J Chain J, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|L Chain L, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|N Chain N, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|P Chain P, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|B Chain B, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|D Chain D, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|F Chain F, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|H Chain H, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|J Chain J, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|L Chain L, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|N Chain N, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|P Chain P, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 354
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 7 YPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD--VMVMPNLYGNIVDNLASDI 62
+ N+ + ++K YP + E ++DN +++V+NP + V V PNLYG+I+ +L S +
Sbjct: 200 FVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGL 257
>pdb|1GC8|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
pdb|1GC8|B Chain B, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Phe
Length = 345
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|1IDM|A Chain A, 3-Isopropylmalate Dehydrogenase, Loop-Deleted Chimera
Length = 343
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 198 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 251
>pdb|1DPZ|A Chain A, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
pdb|1DPZ|B Chain B, Stucture Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd711
Length = 349
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|1DR0|A Chain A, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
pdb|1DR0|B Chain B, Structure Of Modified 3-isopropylmalate Dehydrogenase At
The C- Terminus, Hd708
Length = 346
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|1OSI|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|B Chain B, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|C Chain C, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1OSI|D Chain D, Structure Of 3-Isopropylmalate Dehydrogenase
pdb|1HEX|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With Nad+: Ligand-Induced Loop-Closing And Mechanism For
Cofactor Specificity
pdb|1XAA|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (100k)
Structure
pdb|1XAB|A Chain A, 3-Isopropylmalate Dehydrogenase, Low Temperature (150k)
Structure
pdb|2ZTW|A Chain A, Structure Of 3-Isopropylmalate Dehydrogenase In Complex
With The Inhibitor And Nad+
Length = 345
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|1XAC|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (100k) Structure.
pdb|1XAD|A Chain A, Chimera Isopropylmalate Dehydrogenase Between Bacillus
Subtilis (M) And Thermus Thermophilus (T) From
N-Terminal: 20% T Middle 20% M Residual 60% T, Mutated
At S82r. Low Temperature (150k) Structure
Length = 345
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|2Y3Z|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Apo Enzyme
pdb|2Y40|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y40|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Mn
pdb|2Y41|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y41|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Ipm And Mn
pdb|2Y42|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|2Y42|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus - Complex With Nadh And Mn
pdb|4F7I|A Chain A, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|B Chain B, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|C Chain C, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
pdb|4F7I|D Chain D, Structure Of Isopropylmalate Dehydrogenase From Thermus
Thermophilus In Complex With Ipm, Mn And Nadh
Length = 359
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 203 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 256
>pdb|1IPD|A Chain A, Three-Dimensional Structure Of A Highly Thermostable
Enzyme, 3- Isopropylmalate Dehydrogenase Of Thermus
Thermophilus At 2.2 Angstroms Resolution
Length = 345
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|1DR8|A Chain A, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
pdb|1DR8|B Chain B, Structure Of Modified 3-Isopropylmalate Dehydrogenase At
The C- Terminus, Hd177
Length = 344
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|1G2U|A Chain A, The Structure Of The Mutant, A172v, Of 3-Isopropylmalate
Dehydrogenase From Thermus Thermophilus Hb8 : Its
Thermostability And Structure
Length = 345
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|1OSJ|A Chain A, Structure Of 3-isopropylmalate Dehydrogenase
pdb|1OSJ|B Chain B, Structure Of 3-isopropylmalate Dehydrogenase
Length = 345
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|1GC9|A Chain A, The Crystal Structure Of Thermus Thermophilus
3-Isopropylmalate Dehydrogenase Mutated At 172th From
Ala To Gly
Length = 345
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 200 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 253
>pdb|3TY3|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY3|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe Bound To Glycyl-Glycyl-Glycine
pdb|3TY4|A Chain A, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
pdb|3TY4|B Chain B, Crystal Structure Of Homoisocitrate Dehydrogenase From
Schizosaccharomyces Pombe
Length = 366
Score = 45.1 bits (105), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 11 GQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
Q++ Y I ++ IVD+ ++ P FDV+V PNLYG+I+ + A+ + GS
Sbjct: 218 AQSLDPSYASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGS 272
>pdb|1W0D|A Chain A, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|B Chain B, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|C Chain C, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|1W0D|D Chain D, The High Resolution Structure Of Mycobacterium
Tuberculosis Leub (Rv2995c)
pdb|2G4O|A Chain A, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|B Chain B, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|C Chain C, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
pdb|2G4O|D Chain D, Anomalous Substructure Of 3-isopropylmalate Dehydrogenase
Length = 337
Score = 44.3 bits (103), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 34/51 (66%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64
+ + YP ++ VD T+ ++++P +FDV+V NL+G+I+ +LA+ + G
Sbjct: 197 VGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCG 247
>pdb|3UDO|A Chain A, Crystal Structure Of Putative Isopropylamlate
Dehydrogenase From Campylobacter Jejuni
Length = 361
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIV-DNLAS 60
+AK Y I E VDN QIV NP FDV + NL+G+I+ D LA+
Sbjct: 209 VAKDYQDINLEYXYVDNAAXQIVKNPSIFDVXLCSNLFGDILSDELAA 256
>pdb|3FMX|X Chain X, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Putida Complexed With Nadh
Length = 364
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ MA YP + +++ +D + V P +FDV+V NL+G+I+ +L G+
Sbjct: 208 EAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGT 261
>pdb|3FLK|A Chain A, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|B Chain B, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|C Chain C, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
pdb|3FLK|D Chain D, Crystal Structure Of Tartrate Dehydrogenase From
Pseudomonas Complex With Nadh, Oxalate And Metal Ion
Length = 364
Score = 37.7 bits (86), Expect = 0.001, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ A YP + +++ +D + V P +FDV+V NL+G+I+ +L G+
Sbjct: 208 EAXAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGT 261
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 20 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64
KI I DN QI++ P + V+V PNL G+ + + AS + G
Sbjct: 278 KILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVG 322
>pdb|2DHT|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2DHT|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7
pdb|2E0C|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E0C|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain7 At 2.0 A Resolution
pdb|2E5M|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
pdb|2E5M|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Sulfolobus Tokodaii Strain 7
Length = 409
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 20 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
KI I DN QI+ P ++D+++ PN+ G+ + + A + G+
Sbjct: 265 KIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGN 310
>pdb|2IV0|A Chain A, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
pdb|2IV0|B Chain B, Thermal Stability Of Isocitrate Dehydrogenase From
Archaeoglobus Fulgidus Studied By Crystal Structure
Analysis And Engineering Of Chimers
Length = 412
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 20 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64
KI + I DN QI++ ++DV+ +PNL G+ + + A+ + G
Sbjct: 268 KIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIG 312
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,884,325
Number of Sequences: 62578
Number of extensions: 52420
Number of successful extensions: 133
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 44
length of query: 65
length of database: 14,973,337
effective HSP length: 36
effective length of query: 29
effective length of database: 12,720,529
effective search space: 368895341
effective search space used: 368895341
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)