Query psy9334
Match_columns 65
No_of_seqs 123 out of 1084
Neff 5.4
Searched_HMMs 29240
Date Sat Aug 17 00:39:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3udu_A 3-isopropylmalate dehyd 100.0 3.5E-30 1.2E-34 187.0 4.9 63 3-65 198-260 (361)
2 3vmk_A 3-isopropylmalate dehyd 100.0 3.5E-30 1.2E-34 187.7 4.8 63 3-65 210-272 (375)
3 1vlc_A 3-isopropylmalate dehyd 100.0 6.4E-30 2.2E-34 185.8 5.1 63 3-65 205-267 (366)
4 3flk_A Tartrate dehydrogenase/ 100.0 6.7E-30 2.3E-34 185.5 5.1 61 5-65 201-261 (364)
5 2y3z_A 3-isopropylmalate dehyd 100.0 7.1E-30 2.4E-34 185.2 5.1 63 3-65 194-256 (359)
6 3r8w_A 3-isopropylmalate dehyd 100.0 6.4E-30 2.2E-34 187.9 4.9 63 3-65 238-300 (405)
7 1a05_A IPMDH, IMDH, 3-isopropy 100.0 7.7E-30 2.6E-34 184.7 5.2 63 3-65 196-258 (358)
8 3u1h_A 3-isopropylmalate dehyd 100.0 7.3E-30 2.5E-34 186.9 4.9 63 3-65 217-279 (390)
9 1cnz_A IPMDH, IMDH, protein (3 100.0 7.8E-30 2.7E-34 185.0 4.8 63 3-65 201-263 (363)
10 1w0d_A 3-isopropylmalate dehyd 100.0 1E-29 3.5E-34 183.0 5.0 62 4-65 187-248 (337)
11 1x0l_A Homoisocitrate dehydrog 100.0 1.4E-29 4.7E-34 182.2 5.0 62 4-65 178-239 (333)
12 3ty4_A Probable homoisocitrate 100.0 1.9E-29 6.3E-34 183.4 4.8 61 5-65 209-272 (366)
13 3blx_A Isocitrate dehydrogenas 99.9 6.4E-29 2.2E-33 179.7 4.9 61 5-65 192-253 (349)
14 3blx_B Isocitrate dehydrogenas 99.9 2.2E-28 7.4E-33 177.2 4.9 61 5-65 198-261 (354)
15 2d1c_A Isocitrate dehydrogenas 99.9 2.5E-28 8.5E-33 183.0 5.2 60 6-65 201-260 (496)
16 2e0c_A 409AA long hypothetical 99.9 6.7E-28 2.3E-32 176.9 5.2 61 5-65 232-310 (409)
17 2iv0_A Isocitrate dehydrogenas 99.9 7.8E-28 2.7E-32 176.8 4.1 60 6-65 233-313 (412)
18 3dms_A Isocitrate dehydrogenas 99.9 1.5E-27 5.1E-32 175.9 4.4 62 4-65 248-329 (427)
19 1tyo_A Isocitrate dehydrogenas 99.9 1.9E-27 6.4E-32 175.8 4.7 60 6-65 243-323 (435)
20 2d4v_A Isocitrate dehydrogenas 99.9 2.5E-27 8.5E-32 174.9 5.1 60 6-65 240-332 (429)
21 1hqs_A Isocitrate dehydrogenas 99.9 2.8E-27 9.6E-32 174.3 4.0 60 6-65 231-323 (423)
22 2uxq_A Isocitrate dehydrogenas 99.9 1.4E-26 4.7E-31 169.4 4.3 60 5-65 218-284 (402)
23 1wpw_A 3-isopropylmalate dehyd 99.9 1.6E-26 5.5E-31 166.4 4.6 60 4-65 177-236 (336)
24 1lwd_A Isocitrate dehydrogenas 99.9 1.4E-26 4.7E-31 169.9 4.1 60 5-65 221-287 (413)
25 2qfy_A Isocitrate dehydrogenas 99.9 9.3E-27 3.2E-31 171.4 3.2 61 4-65 236-303 (427)
26 3us8_A Isocitrate dehydrogenas 99.9 9.8E-26 3.4E-30 166.3 4.6 61 4-65 241-308 (427)
27 1zor_A Isocitrate dehydrogenas 99.9 6.7E-26 2.3E-30 165.5 3.6 60 5-65 217-282 (399)
28 4aoy_A Isocitrate dehydrogenas 99.9 5E-25 1.7E-29 161.5 5.2 61 4-65 218-285 (402)
29 2af4_C Phosphate acetyltransfe 84.5 2.5 8.4E-05 29.4 5.7 52 8-59 224-285 (333)
30 1vmi_A Putative phosphate acet 82.4 2.4 8.2E-05 29.9 5.0 51 8-58 231-291 (355)
31 1td9_A Phosphate acetyltransfe 78.1 5.1 0.00017 27.8 5.5 52 8-59 224-285 (329)
32 3evi_A Phosducin-like protein 74.7 0.67 2.3E-05 27.5 0.2 40 2-49 37-76 (118)
33 2peb_A Putative dioxygenase; s 74.6 4.5 0.00015 25.2 4.0 37 20-57 58-94 (122)
34 2p8i_A Putative dioxygenase; Y 74.6 3.9 0.00013 25.3 3.7 37 20-57 61-97 (117)
35 4azs_A Methyltransferase WBDD; 73.1 2.6 8.9E-05 30.9 3.0 47 8-54 101-147 (569)
36 3quf_A Extracellular solute-bi 72.4 6.1 0.00021 26.5 4.6 45 6-50 42-92 (414)
37 3bvr_A NOTI restriction endonu 70.7 1.1 3.8E-05 32.6 0.5 29 36-64 70-100 (383)
38 1r5j_A Putative phosphotransac 70.1 7.7 0.00026 26.8 4.8 52 8-59 228-289 (337)
39 3cfx_A UPF0100 protein MA_0280 69.9 9.6 0.00033 24.9 5.0 45 6-50 18-64 (296)
40 3c9h_A ABC transporter, substr 69.4 5.8 0.0002 26.3 3.9 44 6-49 46-95 (355)
41 3cij_A UPF0100 protein AF_0094 67.5 12 0.00041 24.3 5.0 45 6-50 18-64 (295)
42 1elj_A Maltodextrin-binding pr 64.7 5.3 0.00018 26.6 2.9 43 6-48 21-66 (381)
43 2heu_A Sugar ABC transporter, 63.1 12 0.0004 25.2 4.4 43 5-48 32-79 (401)
44 2b3f_A Glucose-binding protein 62.4 11 0.00037 25.3 4.2 44 5-48 15-66 (400)
45 3hhf_B Transcriptional regulat 61.7 6 0.00021 23.1 2.5 42 5-49 20-61 (213)
46 3cfz_A UPF0100 protein MJ1186; 61.2 18 0.00062 23.4 5.0 45 6-50 18-64 (292)
47 1yco_A Branched-chain phosphot 58.8 6.7 0.00023 26.9 2.7 44 19-62 181-234 (279)
48 3uor_A ABC transporter sugar b 56.7 10 0.00034 26.2 3.3 44 5-49 42-91 (458)
49 3k6v_A Solute-binding protein 56.7 12 0.0004 26.2 3.7 46 5-50 55-102 (354)
50 4aq4_A SN-glycerol-3-phosphate 55.0 18 0.00061 23.9 4.2 44 6-49 21-70 (419)
51 2ql3_A Probable transcriptiona 54.7 13 0.00043 21.8 3.1 42 5-47 18-60 (209)
52 2djk_A PDI, protein disulfide- 54.3 5.9 0.0002 23.0 1.6 27 2-29 36-63 (133)
53 3l6u_A ABC-type sugar transpor 52.9 34 0.0012 21.4 5.2 43 8-50 154-204 (293)
54 3k01_A Acarbose/maltose bindin 52.2 17 0.00058 24.3 3.8 45 5-49 42-92 (412)
55 3i3v_A Probable secreted solut 51.9 18 0.0006 24.1 3.8 43 5-48 24-71 (405)
56 3cg1_A UPF0100 protein PF0080; 51.5 17 0.00057 23.5 3.6 45 6-50 18-69 (296)
57 3uf6_A LMO1369 protein; struct 51.5 15 0.0005 25.3 3.4 52 12-63 189-251 (291)
58 2z8f_A Galacto-N-biose/lacto-N 50.9 28 0.00095 23.4 4.7 43 6-49 32-82 (412)
59 3onm_A Transcriptional regulat 47.0 14 0.00048 22.3 2.5 44 5-50 40-85 (238)
60 1ws6_A Methyltransferase; stru 46.8 34 0.0012 19.6 4.1 33 20-52 89-121 (171)
61 3l49_A ABC sugar (ribose) tran 45.9 21 0.00071 22.4 3.3 43 8-50 144-200 (291)
62 1twy_A ABC transporter, peripl 45.8 21 0.00072 21.9 3.2 42 6-49 41-84 (290)
63 4g68_A ABC transporter; transp 45.3 23 0.00078 24.3 3.6 41 6-47 79-125 (456)
64 1sbp_A Sulfate-binding protein 45.2 26 0.00089 22.3 3.7 43 6-49 16-65 (310)
65 2uvj_A TOGB, ABC type periplas 44.4 47 0.0016 22.1 5.0 43 6-49 21-69 (408)
66 1g5t_A COB(I)alamin adenosyltr 44.4 37 0.0013 22.1 4.4 31 28-58 140-170 (196)
67 3jv9_A OXYR, transcriptional r 41.9 13 0.00043 21.7 1.7 42 5-48 17-60 (219)
68 3ho7_A OXYR; beta-alpha-barrel 41.8 17 0.0006 21.4 2.3 42 6-49 25-68 (232)
69 3ksm_A ABC-type sugar transpor 41.2 56 0.0019 20.0 4.7 44 7-50 145-196 (276)
70 1eu8_A Trehalose/maltose bindi 40.7 38 0.0013 22.5 4.1 45 5-49 18-70 (409)
71 2fhp_A Methylase, putative; al 40.5 41 0.0014 19.6 3.9 33 20-52 95-127 (187)
72 1xg8_A Hypothetical protein SA 38.6 7.8 0.00027 24.0 0.3 21 7-29 34-54 (111)
73 2h9b_A HTH-type transcriptiona 38.6 36 0.0012 21.6 3.6 42 5-48 103-146 (312)
74 4gqo_A LMO0859 protein; virule 38.3 14 0.00048 24.8 1.6 42 5-47 44-92 (433)
75 3oxn_A Putative transcriptiona 38.2 17 0.00058 21.9 1.9 42 6-49 33-76 (241)
76 2q5c_A NTRC family transcripti 37.9 33 0.0011 21.8 3.3 50 7-57 16-67 (196)
77 3fzv_A Probable transcriptiona 37.1 22 0.00076 22.2 2.4 41 6-48 109-151 (306)
78 2w7y_A FCSSBP, probable sugar 36.9 63 0.0022 21.6 4.8 43 6-49 58-107 (430)
79 2fyi_A HTH-type transcriptiona 36.9 22 0.00076 21.2 2.3 41 6-48 28-70 (228)
80 3e8s_A Putative SAM dependent 36.3 21 0.00071 21.4 2.1 38 15-52 90-127 (227)
81 3hhg_A Transcriptional regulat 35.7 13 0.00046 23.2 1.1 41 6-49 107-147 (306)
82 1xvx_A YFUA; periplasmic iron 34.8 28 0.00097 22.2 2.6 43 6-49 17-63 (312)
83 2hxr_A HTH-type transcriptiona 33.8 38 0.0013 20.1 3.0 41 6-47 44-85 (238)
84 2fn9_A Ribose ABC transporter, 32.5 86 0.0029 19.5 4.6 42 8-49 150-199 (290)
85 2pju_A Propionate catabolism o 32.3 77 0.0026 20.8 4.5 53 3-57 21-79 (225)
86 3zzx_A Thioredoxin; oxidoreduc 31.5 19 0.00063 20.3 1.2 27 2-29 34-60 (105)
87 4euy_A Uncharacterized protein 31.3 16 0.00054 19.7 0.8 27 2-29 32-58 (105)
88 1ixc_A CBNR, LYSR-type regulat 31.3 38 0.0013 20.9 2.8 41 6-48 105-147 (294)
89 2dbc_A PDCL2, unnamed protein 31.1 7.6 0.00026 22.5 -0.6 39 2-48 44-82 (135)
90 3mjd_A Orotate phosphoribosylt 30.7 83 0.0028 20.8 4.5 36 25-60 65-100 (232)
91 3ofk_A Nodulation protein S; N 30.5 13 0.00045 22.5 0.5 15 38-52 111-125 (216)
92 3s99_A Basic membrane lipoprot 30.3 26 0.0009 24.3 2.0 51 4-61 94-144 (356)
93 1atg_A MODA, periplasmic molyb 29.6 48 0.0016 19.4 2.9 42 6-49 13-56 (231)
94 4e4r_A Phosphate acetyltransfe 29.5 41 0.0014 23.5 2.9 45 20-64 237-291 (331)
95 1i6a_A OXYR, hydrogen peroxide 29.2 89 0.0031 18.2 4.7 40 6-47 19-60 (219)
96 2vlu_A Thioredoxin, thioredoxi 28.9 22 0.00076 19.4 1.2 27 2-29 48-74 (122)
97 1ego_A Glutaredoxin; electron 28.3 34 0.0012 17.5 1.8 28 2-30 13-40 (85)
98 2h98_A HTH-type transcriptiona 28.1 47 0.0016 21.3 2.8 42 5-48 103-146 (313)
99 1nnf_A Iron-utilization peripl 28.0 59 0.002 20.5 3.3 43 6-49 12-58 (309)
100 1uj8_A ORF3, hypothetical prot 27.7 92 0.0031 17.9 4.0 35 8-43 20-54 (77)
101 1gh2_A Thioredoxin-like protei 26.9 26 0.00087 18.7 1.2 27 2-29 35-61 (107)
102 1z6n_A Hypothetical protein PA 26.6 38 0.0013 20.8 2.1 29 2-31 68-96 (167)
103 1q1v_A DEK protein; winged-hel 26.5 86 0.003 17.2 3.6 30 8-37 36-67 (70)
104 2qgv_A Hydrogenase-1 operon pr 26.4 53 0.0018 20.2 2.8 29 2-31 50-80 (140)
105 3lec_A NADB-rossmann superfami 26.3 23 0.00078 23.5 1.1 20 41-60 90-109 (230)
106 2l6c_A Thioredoxin; oxidoreduc 26.2 28 0.00096 19.0 1.3 27 2-29 33-59 (110)
107 3thi_A Protein (thiaminase I); 26.2 43 0.0015 21.8 2.4 43 5-51 16-59 (371)
108 2gha_A Maltose ABC transporter 26.2 53 0.0018 21.6 2.9 44 5-49 15-63 (382)
109 3f3q_A Thioredoxin-1; His TAG, 26.0 27 0.00092 19.0 1.2 27 2-29 38-64 (109)
110 2x7x_A Sensor protein; transfe 25.3 1.2E+02 0.0041 19.4 4.5 42 9-50 148-197 (325)
111 4eqb_A Spermidine/putrescine A 24.9 50 0.0017 21.3 2.5 41 9-50 23-66 (330)
112 3gnl_A Uncharacterized protein 24.0 24 0.00084 23.6 0.9 20 41-60 90-109 (244)
113 2y7p_A LYSR-type regulatory pr 23.9 51 0.0018 19.6 2.3 40 6-47 22-63 (218)
114 4gvo_A LMO2349 protein; struct 23.7 31 0.001 21.2 1.2 37 9-47 37-75 (243)
115 3i9f_A Putative type 11 methyl 23.6 81 0.0028 18.1 3.1 29 18-53 59-87 (170)
116 3oo8_A ABC transporter binding 23.4 89 0.003 20.7 3.6 40 5-47 43-88 (415)
117 2es7_A Q8ZP25_salty, putative 23.4 55 0.0019 19.4 2.3 28 2-30 50-79 (142)
118 3cvg_A Putative metal binding 23.3 92 0.0031 20.2 3.6 43 5-49 33-82 (294)
119 3ttm_A Polyamine transport pro 23.3 41 0.0014 21.7 1.8 40 9-49 22-64 (346)
120 1r26_A Thioredoxin; redox-acti 23.2 33 0.0011 19.5 1.2 27 2-29 51-77 (125)
121 4gl0_A LMO0810 protein; struct 23.2 66 0.0023 20.8 2.9 40 9-49 25-67 (333)
122 3h2b_A SAM-dependent methyltra 23.1 63 0.0022 19.2 2.6 31 17-51 82-112 (203)
123 3n94_A Fusion protein of malto 22.8 48 0.0016 22.9 2.2 43 6-49 21-66 (475)
124 2l9s_A PHD finger protein 12; 22.8 79 0.0027 16.4 2.6 12 32-43 19-30 (45)
125 3tv9_A Putative peptide matura 22.3 22 0.00077 25.6 0.4 24 39-62 251-274 (457)
126 1nho_A Probable thioredoxin; b 22.2 28 0.00095 17.5 0.7 27 2-29 15-42 (85)
127 1vpb_A Putative modulator of D 22.1 36 0.0012 24.2 1.5 36 26-61 224-266 (451)
128 3kos_A HTH-type transcriptiona 22.1 61 0.0021 18.8 2.3 39 6-47 26-64 (219)
129 3qfa_C Thioredoxin; protein-pr 22.0 34 0.0012 18.9 1.1 27 2-29 45-71 (116)
130 2r8r_A Sensor protein; KDPD, P 21.9 19 0.00066 24.1 0.0 27 38-64 114-141 (228)
131 1pot_A POTD, spermidine/putres 21.7 32 0.0011 22.1 1.0 41 8-49 17-61 (325)
132 3iot_A Maltose-binding protein 21.6 49 0.0017 22.7 2.0 43 6-49 19-64 (449)
133 2qsx_A Putative transcriptiona 21.4 63 0.0022 19.2 2.3 38 7-47 34-71 (218)
134 1al3_A Cys regulon transcripti 20.9 52 0.0018 21.0 2.0 40 7-48 108-149 (324)
135 3py7_A Maltose-binding peripla 20.6 56 0.0019 23.1 2.2 43 6-49 20-65 (523)
136 1faa_A Thioredoxin F; electron 20.5 62 0.0021 17.6 2.0 27 2-29 51-77 (124)
137 2wz9_A Glutaredoxin-3; protein 20.5 42 0.0014 19.5 1.3 27 2-29 46-72 (153)
138 3e13_X Putative iron-uptake AB 20.4 70 0.0024 20.1 2.5 43 6-49 14-60 (322)
139 2pu9_C TRX-F, thioredoxin F-ty 20.3 64 0.0022 17.1 2.0 27 2-29 38-64 (111)
No 1
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=99.96 E-value=3.5e-30 Score=186.95 Aligned_cols=63 Identities=41% Similarity=0.641 Sum_probs=61.2
Q ss_pred hhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 3 CRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 3 ~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+.+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 198 t~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~Gs 260 (361)
T 3udu_A 198 SSILWREVVANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGS 260 (361)
T ss_dssp HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHHHHCCCCeEEeeeHHHHHHHHHhCcccCcEEEecchhHHHHHHHHHHhcCc
Confidence 456999999999999999999999999999999999999999999999999999999999997
No 2
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=99.96 E-value=3.5e-30 Score=187.66 Aligned_cols=63 Identities=37% Similarity=0.736 Sum_probs=61.2
Q ss_pred hhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 3 CRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 3 ~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+.+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 210 ~~glf~~~~~eva~eypdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~Gs 272 (375)
T 3vmk_A 210 CSVLWREVVEEVAKDYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGS 272 (375)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHHHHHHHHHHCCCceEeeeeHHHHHHHHHhCcccCcEEEECchhHHHHHHHHHHhcCC
Confidence 457999999999999999999999999999999999999999999999999999999999997
No 3
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=99.96 E-value=6.4e-30 Score=185.84 Aligned_cols=63 Identities=29% Similarity=0.648 Sum_probs=61.3
Q ss_pred hhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 3 CRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 3 ~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+.+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 205 t~glf~~~~~eva~eypdV~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~Gs 267 (366)
T 1vlc_A 205 SSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGS 267 (366)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHTTSSSC
T ss_pred cchHHHHHHHHHHHHCCCceEEeeeHHHHHHHHhhCcccceEEEEcchhHHHHHHHHHHhcCc
Confidence 467999999999999999999999999999999999999999999999999999999999997
No 4
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=99.96 E-value=6.7e-30 Score=185.47 Aligned_cols=61 Identities=28% Similarity=0.554 Sum_probs=59.9
Q ss_pred chHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 201 glf~~~~~eva~eypdv~~~~~~vD~~am~lv~~P~~FDVivt~NlfGDILSD~aa~l~Gs 261 (364)
T 3flk_A 201 PYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGT 261 (364)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCceEEeeEHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCC
Confidence 4999999999999999999999999999999999999999999999999999999999997
No 5
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=99.96 E-value=7.1e-30 Score=185.17 Aligned_cols=63 Identities=32% Similarity=0.567 Sum_probs=61.3
Q ss_pred hhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 3 CRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 3 ~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+.+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 194 ~~~lf~~~~~eva~eypdI~~~~~~VD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~Gs 256 (359)
T 2y3z_A 194 VGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 256 (359)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTSC
T ss_pred ccHHHHHHHHHHHHHCCcEEEEeeEHHHHHHHHhhCcccccEEEEcCcchHHHHHHHHHhcCc
Confidence 456999999999999999999999999999999999999999999999999999999999998
No 6
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=99.96 E-value=6.4e-30 Score=187.85 Aligned_cols=63 Identities=37% Similarity=0.646 Sum_probs=61.2
Q ss_pred hhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 3 CRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 3 ~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+.+|+++++|++++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 238 ~sglf~~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~Gs 300 (405)
T 3r8w_A 238 ASILWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGS 300 (405)
T ss_dssp HHHHHHHHHHHHGGGSTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhChhhCcEEeecchhhHHHHHHHHHhcCc
Confidence 457999999999999999999999999999999999999999999999999999999999997
No 7
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=99.96 E-value=7.7e-30 Score=184.67 Aligned_cols=63 Identities=33% Similarity=0.636 Sum_probs=61.2
Q ss_pred hhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 3 CRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 3 ~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+.+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 196 ~~~lf~~~~~eva~eypdI~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~Gs 258 (358)
T 1a05_A 196 TTRLWREVVTEVARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGS 258 (358)
T ss_dssp HHHHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSC
T ss_pred cchhHHHHHHHHHHHCCCceEEeeeHHHHHHHHHhCCCcccEEEecCcccHhHHHHHHhhcCC
Confidence 456999999999999999999999999999999999999999999999999999999999997
No 8
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=99.96 E-value=7.3e-30 Score=186.91 Aligned_cols=63 Identities=41% Similarity=0.742 Sum_probs=61.2
Q ss_pred hhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 3 CRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 3 ~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+.+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 217 t~glfr~~~~eva~eYPdV~~~~~~VD~~amqLV~~P~~FDViVt~NlfGDILSD~aA~l~Gs 279 (390)
T 3u1h_A 217 SSRLWREVAEEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGS 279 (390)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHSC
T ss_pred cchHHHHHHHHHHhHCCCCeEEeeeHHHHHHHHHhCcccCcEEEecccchHHHHHHHHHhcCc
Confidence 357999999999999999999999999999999999999999999999999999999999997
No 9
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=99.96 E-value=7.8e-30 Score=184.99 Aligned_cols=63 Identities=35% Similarity=0.700 Sum_probs=61.2
Q ss_pred hhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 3 CRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 3 ~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+.+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 201 ~~~lf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~Gs 263 (363)
T 1cnz_A 201 SSILWREIVNDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGS 263 (363)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHHHHHCCCceEeeeeHHHHHHHHhhCcccceEEEECCcchHHHHHHHHHhcCC
Confidence 456999999999999999999999999999999999999999999999999999999999997
No 10
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=99.96 E-value=1e-29 Score=182.96 Aligned_cols=62 Identities=27% Similarity=0.550 Sum_probs=60.4
Q ss_pred hchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 4 RFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 4 ~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
..+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 187 ~glf~~~~~eva~eyp~i~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDIlSD~aa~l~Gs 248 (337)
T 1w0d_A 187 GGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGG 248 (337)
T ss_dssp HHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHCCceEEEEEEHHHHHHHHhhCcccccEEEECcchhHHHHHHHhhhcCC
Confidence 35999999999999999999999999999999999999999999999999999999999997
No 11
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=99.95 E-value=1.4e-29 Score=182.19 Aligned_cols=62 Identities=37% Similarity=0.685 Sum_probs=60.5
Q ss_pred hchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 4 RFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 4 ~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
..+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 178 ~glf~~~~~eva~eyp~I~~~~~~vD~~~m~lv~~P~~FDVivt~NlfGDIlSD~aa~l~Gs 239 (333)
T 1x0l_A 178 QGLFLDTVKEVAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGG 239 (333)
T ss_dssp HHHHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhCcccceEEEEcCccchhHhHHHHhhcCC
Confidence 45999999999999999999999999999999999999999999999999999999999997
No 12
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=99.95 E-value=1.9e-29 Score=183.43 Aligned_cols=61 Identities=31% Similarity=0.530 Sum_probs=59.8
Q ss_pred chHHHHHHHH---HhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 5 FGYPNLGQTM---AKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 5 ~~f~~~~~ev---a~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+|+++++|+ +++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 209 glf~~~~~ev~~~a~eypdV~~~~~~VD~~am~lv~~P~~FDViVt~NlfGDILSD~aa~l~Gs 272 (366)
T 3ty4_A 209 GLFRESCRHAQSLDPSYASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGS 272 (366)
T ss_dssp HHHHHHHHHHGGGCGGGTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHhHhhCCCceEEeeeHHHHHHHHHhCcccCcEEEECccchHHHHHHHHHhcCc
Confidence 4999999999 999999999999999999999999999999999999999999999999997
No 13
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=99.95 E-value=6.4e-29 Score=179.67 Aligned_cols=61 Identities=41% Similarity=0.753 Sum_probs=59.9
Q ss_pred chHHHHHHHHH-hhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 5 FGYPNLGQTMA-KLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 5 ~~f~~~~~eva-~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
.+|+++++|+| ++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 192 glf~~~~~eva~~eyp~i~~~~~~vD~~~~qlv~~P~~FDVivt~NlfGDIlSD~aa~l~Gs 253 (349)
T 3blx_A 192 GLFRNIITEIGQKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGG 253 (349)
T ss_dssp HHHHHHHHHHHHHHCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhCCCeeEEEeeHHHHHHHHhhCcccccEEEECCcchHHHHHHHHhhcCC
Confidence 59999999999 99999999999999999999999999999999999999999999999997
No 14
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=99.94 E-value=2.2e-28 Score=177.15 Aligned_cols=61 Identities=36% Similarity=0.726 Sum_probs=59.9
Q ss_pred chHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCcc--EEecCCchHHHHHhhhhhc-cCC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD--VMVMPNLYGNIVDNLASDI-KGS 65 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fD--VIV~~Nl~GDIlSD~aa~l-~Gg 65 (65)
.+|+++++|+|++||+|++++++||+++||||++|++|| ||||+|||||||||++|++ +||
T Consensus 198 glf~~~~~eva~eypdI~~~~~~vD~~~m~lv~~P~~FD~~Vivt~NlfGDIlSD~aa~l~~Gs 261 (354)
T 3blx_B 198 GLFVNVAKELSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNSGLSAGS 261 (354)
T ss_dssp HHHHHHHHHHGGGCTTSEEEEEEHHHHHHHHHHCGGGGTTEEEEECHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHCCCceEEEEEHHHHHHHHhhChhhCCceEEEecCcccchhHHHHHhhccCC
Confidence 589999999999999999999999999999999999999 9999999999999999999 997
No 15
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=99.94 E-value=2.5e-28 Score=182.99 Aligned_cols=60 Identities=35% Similarity=0.606 Sum_probs=59.5
Q ss_pred hHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
+|+++++|+|++||+|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 201 lfr~v~~eVa~eYPdI~~e~~~VD~~amqLV~~P~~FDVIVt~NLfGDILSDlaA~l~Gs 260 (496)
T 2d1c_A 201 TLKRAFEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGG 260 (496)
T ss_dssp HHHHHHHHHHTTCTTSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHCCCceEEEEeHHHHHHHHhhCcCcceEEEECCcchHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999997
No 16
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=99.94 E-value=6.7e-28 Score=176.94 Aligned_cols=61 Identities=25% Similarity=0.478 Sum_probs=59.6
Q ss_pred chHHHHHHHHHh-hCCC-----------------ceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 5 FGYPNLGQTMAK-LYPK-----------------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 5 ~~f~~~~~eva~-~ypd-----------------V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
-+|+++++|+|+ +||+ |++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 232 glf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aa~l~Gs 310 (409)
T 2e0c_A 232 GAFREWAYEVALKEYRDFIVTEEEINQGKPDQGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGN 310 (409)
T ss_dssp HHHHHHHHHHHHHHSTTTEEEHHHHTTTCCCTTSEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHhCCCccccccccccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcCC
Confidence 389999999998 9999 999999999999999999999999999999999999999999998
No 17
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=99.94 E-value=7.8e-28 Score=176.82 Aligned_cols=60 Identities=28% Similarity=0.551 Sum_probs=59.1
Q ss_pred hHHHHHHHHHh-hCCC--------------------ceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccC
Q psy9334 6 GYPNLGQTMAK-LYPK--------------------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64 (65)
Q Consensus 6 ~f~~~~~eva~-~ypd--------------------V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~G 64 (65)
+|+++++|+|+ +||+ |++++++||+++||||++|++||||||+|||||||||++|+++|
T Consensus 233 lf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~G 312 (412)
T 2iv0_A 233 AFRDWGYEVAKQEFGEYCITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIG 312 (412)
T ss_dssp HHHHHHHHHHHHHSTTTEECHHHHHHHHTTCCCTTCEEEEEEEGGGHHHHHHHSGGGCCEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccccccchhhhccccccCCeEEEEEEEHHHHHHHHhhCcccccEEEECCcchHHHHHHHHHhcC
Confidence 89999999998 9999 99999999999999999999999999999999999999999999
Q ss_pred C
Q psy9334 65 S 65 (65)
Q Consensus 65 g 65 (65)
|
T Consensus 313 s 313 (412)
T 2iv0_A 313 G 313 (412)
T ss_dssp C
T ss_pred C
Confidence 8
No 18
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=99.94 E-value=1.5e-27 Score=175.95 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=58.8
Q ss_pred hchHHHHHHHHHh-hCCC-------------------ceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhcc
Q psy9334 4 RFGYPNLGQTMAK-LYPK-------------------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIK 63 (65)
Q Consensus 4 ~~~f~~~~~eva~-~ypd-------------------V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~ 63 (65)
..+|+++++|+|+ +||+ |++++++||+++||||++|++||||||+|||||||||++|+++
T Consensus 248 dglfr~~~~eva~~eypdv~~~~~~~~~~~~~~~~~~V~~~~~~VD~~amqlv~~P~~FDViVt~NlfGDILSD~aA~l~ 327 (427)
T 3dms_A 248 EGAFRDAGYALAQKEFGAELIDGGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQV 327 (427)
T ss_dssp HHHHHHHHHHHHHHHHCCEESTTSSCEEEECTTTCCEEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCccccccccccccccccccCceEEEEeeHHHHHHHHhhCcccceEEEEcccccHHHHHHHHHhc
Confidence 4699999999997 6985 8889999999999999999999999999999999999999999
Q ss_pred CC
Q psy9334 64 GS 65 (65)
Q Consensus 64 Gg 65 (65)
||
T Consensus 328 Gs 329 (427)
T 3dms_A 328 GG 329 (427)
T ss_dssp TC
T ss_pred CC
Confidence 97
No 19
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=99.94 E-value=1.9e-27 Score=175.77 Aligned_cols=60 Identities=28% Similarity=0.510 Sum_probs=59.0
Q ss_pred hHHHHHHHHHh-hCCC--------------------ceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccC
Q psy9334 6 GYPNLGQTMAK-LYPK--------------------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKG 64 (65)
Q Consensus 6 ~f~~~~~eva~-~ypd--------------------V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~G 64 (65)
+|+++++|+|+ +||+ |++++++||+++||||++|++||||||+|||||||||++|+++|
T Consensus 243 lf~~~~~eva~~eypd~~~~e~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfGDILSD~aA~l~G 322 (435)
T 1tyo_A 243 AFMRWAYEVALEKFREHVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAASALVG 322 (435)
T ss_dssp HHHHHHHHHHHHHSGGGEEEHHHHHHHSTTCCCTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccccccccccccccccCCeEEEEeeeHHHHHHHHhhCCCCceEEEEcccchHHHHHHHHhhcC
Confidence 89999999998 9999 89999999999999999999999999999999999999999999
Q ss_pred C
Q psy9334 65 S 65 (65)
Q Consensus 65 g 65 (65)
|
T Consensus 323 s 323 (435)
T 1tyo_A 323 G 323 (435)
T ss_dssp C
T ss_pred C
Confidence 8
No 20
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=99.93 E-value=2.5e-27 Score=174.89 Aligned_cols=60 Identities=25% Similarity=0.478 Sum_probs=58.9
Q ss_pred hHHHHHHHHHh-hCCC--------------------------------ceechhhHHHHHHHHhhCCCCccEEecCCchH
Q psy9334 6 GYPNLGQTMAK-LYPK--------------------------------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYG 52 (65)
Q Consensus 6 ~f~~~~~eva~-~ypd--------------------------------V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~G 52 (65)
+|+++++|+|+ +||+ |++++++||+++||||++|++||||||+||||
T Consensus 240 lf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~fDVivt~NlfG 319 (429)
T 2d4v_A 240 GFRDWGYALAEREFAGRVFTWRQKAAISKAEGKAAGQKAEQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNG 319 (429)
T ss_dssp HHHHHHHHHHHHHSTTTEEEHHHHHHHHHHHCHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCCEEEECHHHH
T ss_pred HHHHHHHHHHHHhCCCccccccccccccccccccccchhccccccCCeeEEEEeeHHHHHHHHhhCcccCcEEEECCccc
Confidence 89999999998 9999 88999999999999999999999999999999
Q ss_pred HHHHhhhhhccCC
Q psy9334 53 NIVDNLASDIKGS 65 (65)
Q Consensus 53 DIlSD~aa~l~Gg 65 (65)
|||||++|+++||
T Consensus 320 DILSD~aA~l~Gs 332 (429)
T 2d4v_A 320 DYVSDALAAEVGG 332 (429)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999997
No 21
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=99.93 E-value=2.8e-27 Score=174.32 Aligned_cols=60 Identities=28% Similarity=0.482 Sum_probs=58.8
Q ss_pred hHHHHHHHHHh-hCCC--------------------------------ceechhhHHHHHHHHhhCCCCccEEecCCchH
Q psy9334 6 GYPNLGQTMAK-LYPK--------------------------------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYG 52 (65)
Q Consensus 6 ~f~~~~~eva~-~ypd--------------------------------V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~G 52 (65)
+|+++++|+|+ +||+ |++++++||+++||||++|++||||||+||||
T Consensus 231 lf~~~~~eva~~eypd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~vD~~~mqlv~~P~~FDVivt~NlfG 310 (423)
T 1hqs_A 231 AFKNWGYELAEKEYGDKVFTWAQYDRIAEEQGKDAANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNG 310 (423)
T ss_dssp HHHHHHHHHHHHHHGGGEEEHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHCGGGCSEEEECHHHH
T ss_pred HHHHHHHHHHHHhCCCcccchhhhccccccccccccccccccccccCeEEEEEeeHHHHHHHHhhCCCCccEEEECCcch
Confidence 89999999998 9999 88999999999999999999999999999999
Q ss_pred HHHHhhhhhccCC
Q psy9334 53 NIVDNLASDIKGS 65 (65)
Q Consensus 53 DIlSD~aa~l~Gg 65 (65)
|||||++|+++||
T Consensus 311 DILSD~aA~l~Gs 323 (423)
T 1hqs_A 311 DYISDALAAQVGG 323 (423)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcCC
Confidence 9999999999997
No 22
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=99.92 E-value=1.4e-26 Score=169.44 Aligned_cols=60 Identities=12% Similarity=0.290 Sum_probs=58.5
Q ss_pred chHHHHHHHHH-hhCCC------ceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 5 FGYPNLGQTMA-KLYPK------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 5 ~~f~~~~~eva-~~ypd------V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
-+|+++++|+| ++||+ |++++++||+++||||++|++| ||||+|||||||||++|+++||
T Consensus 218 glf~~~~~eva~~eypd~~~~~~I~~~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~Gs 284 (402)
T 2uxq_A 218 QRFKIIFEEIFAQEYKEKFAAAGIEYFYTLIDDVVARMMKTEGGM-LWACKNYDGDVMSDMVASAFGS 284 (402)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHTCCEEEEEHHHHHHHHTTCCCCS-EEEECHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCcccCCeEEEEEEEHHHHHHHHccCCCce-EEEEcccchHHHHHHHHHhcCC
Confidence 49999999999 69999 9999999999999999999999 9999999999999999999997
No 23
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=99.92 E-value=1.6e-26 Score=166.39 Aligned_cols=60 Identities=35% Similarity=0.590 Sum_probs=58.3
Q ss_pred hchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 4 RFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 4 ~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
..+|+++++|+|++ +|++++++||+++||||++|++||||||+|||||||||++|+++||
T Consensus 177 ~glf~~~~~eva~~--~I~~~~~~vD~~~~~lv~~P~~FDVivt~NlfGDIlSD~aa~l~Gs 236 (336)
T 1wpw_A 177 DGLFAEACRSVLKG--KVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGS 236 (336)
T ss_dssp HHHHHHHHHHHHTT--TSEEEEEEHHHHHHHHHHCGGGCSEEEECHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHh--CceeEEEeHHHHHHHHhhCcccceEEEEcCcchHHHHHHHHHhcCC
Confidence 45999999999998 9999999999999999999999999999999999999999999997
No 24
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=99.92 E-value=1.4e-26 Score=169.87 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=58.4
Q ss_pred chHHHHHHHHH-hhCCC------ceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 5 FGYPNLGQTMA-KLYPK------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 5 ~~f~~~~~eva-~~ypd------V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
-+|+++++|+| ++||+ |++++++||+++||||++|++| ||||+|||||||||++|+++||
T Consensus 221 glf~~~~~eva~~eypd~~~~~~I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDILSD~aA~l~Gs 287 (413)
T 1lwd_A 221 GRFKDIFQEIFEKHYKTDFDKYKIWYEHRLIDDMVAQVLKSSGGF-VWACKNYDGDVQSDILAQGFGS 287 (413)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCcccCCeEEEEEEEHHHHHHHHhcCCCce-EEEecccccchHHHHHHhhcCC
Confidence 39999999999 79999 9999999999999999999999 9999999999999999999997
No 25
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=99.92 E-value=9.3e-27 Score=171.44 Aligned_cols=61 Identities=20% Similarity=0.398 Sum_probs=59.1
Q ss_pred hchHHHHHHHHH-hhCCC------ceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 4 RFGYPNLGQTMA-KLYPK------IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 4 ~~~f~~~~~eva-~~ypd------V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
+.+|+++++|+| ++||+ |++++++||+++||||++|++| ||||+|||||||||++|+++||
T Consensus 236 ~glfr~v~~eva~~eYpd~~~~~~I~~e~~~VD~~amqlV~~P~~F-Vivt~NlfGDILSD~aA~l~Gs 303 (427)
T 2qfy_A 236 DGRFKDIFQEVYEAQYKSKFEQLGIHYEHRLIDDMVAQMIKSKGGF-IMALKNYDGDVQSDIVAQGFGS 303 (427)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHTCCEEEEEHHHHHHHHHHSCEEE-EEEECHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhCCCcccCCeEEEEEEEHHHHHHHHHhCCCce-EEEECccchHHHHHHHHHhcCc
Confidence 459999999998 79999 9999999999999999999999 9999999999999999999997
No 26
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=99.91 E-value=9.8e-26 Score=166.25 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=58.9
Q ss_pred hchHHHHHHHHHh-hCC------CceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 4 RFGYPNLGQTMAK-LYP------KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 4 ~~~f~~~~~eva~-~yp------dV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
..+|+++++|+|+ +|| +|++++++||+++||||++|++| ||||+|||||||||++|+++||
T Consensus 241 dglfr~~~~eva~~eYp~~~~~~~I~~~~~~VD~~~mqlv~~P~~F-Vivt~NlfGDIlSD~aA~l~Gs 308 (427)
T 3us8_A 241 DGRFKDIFQKVFDEEFAAQFKAEKLWYEHRLIDDMVASALKWSGGY-VWACKNYDGDVQSDIVAQGFGS 308 (427)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHHHHHSCCCE-EEEECHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHhCccccCCCCeEEEEEEHHHHHHHHhhCCCCc-EEEeCCcCCcHHHHHHHHhcCC
Confidence 4689999999999 896 99999999999999999999999 9999999999999999999997
No 27
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=99.91 E-value=6.7e-26 Score=165.54 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=57.9
Q ss_pred chHHHHHHHHHh----hCCC--ceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 5 FGYPNLGQTMAK----LYPK--IQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 5 ~~f~~~~~eva~----~ypd--V~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
-+|+++++|+|+ +||+ |++++++||+++||||++|++| ||||+|||||||||++|+++||
T Consensus 217 glf~~~~~eva~~~~~~yp~~~I~~~~~~vD~~~mqlv~~P~~f-Vivt~NlfGDIlSD~aA~l~Gs 282 (399)
T 1zor_A 217 AYFKDIFQEEVDKRKEELEKAGVNYRYMLIDDAAAQILRSEGGM-LWACMNYEGDIMSDMIASGFGS 282 (399)
T ss_dssp HHHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHHHHHSCCCS-EEEECHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhcccCCCCcEEEEEEEHHHHHHHhccCCCce-EEEEccchHHHHHHHHHHhcCC
Confidence 489999999997 8995 9999999999999999999999 9999999999999999999997
No 28
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=99.91 E-value=5e-25 Score=161.55 Aligned_cols=61 Identities=16% Similarity=0.354 Sum_probs=58.0
Q ss_pred hchHHHHHHHHHh-hCC------CceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhhccCC
Q psy9334 4 RFGYPNLGQTMAK-LYP------KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65 (65)
Q Consensus 4 ~~~f~~~~~eva~-~yp------dV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~l~Gg 65 (65)
..+|+++++|+|+ +|| +|++++++||+++||||++|++| ||||+|||||||||++|+++||
T Consensus 218 dglf~~~~~eva~~eyp~~~~~~~i~~~~~~vD~~~~~lv~~P~~f-Vivt~Nl~GDIlSD~~A~l~Gs 285 (402)
T 4aoy_A 218 DHRFKDIFQEIYENEYKEKFEAKNLQYFYTLIDDAVARIIRSEGGM-VWACKNYDGDVMSDMVASAFGS 285 (402)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCCEEEEEHHHHHHHHHTSCBCS-EEECCC-CHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHhCcccccCCCeEEEEEEHHHHHHHHhhCCCCc-EEEECCcchHHHHHHHHHhcCc
Confidence 4699999999998 898 99999999999999999999999 9999999999999999999997
No 29
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound PER monomer, acyltransferase; HET: COA; 2.15A {Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A* 2af3_C*
Probab=84.52 E-value=2.5 Score=29.41 Aligned_cols=52 Identities=27% Similarity=0.477 Sum_probs=34.1
Q ss_pred HHHHHHHHhhCCCceec-hhhHHHHHHHHhh------CC--CCccEEecCCch-HHHHHhhh
Q psy9334 8 PNLGQTMAKLYPKIQFE-QMIVDNCTMQIVS------NP--HQFDVMVMPNLY-GNIVDNLA 59 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~-~~~vDa~~~~lv~------~P--~~fDVIV~~Nl~-GDIlSD~a 59 (65)
++..+...+++|++.++ ++-.|++...=++ .| .++||+|+||++ |+|.-=+.
T Consensus 224 ~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k~~~s~~~G~aDvlV~pd~d~GNI~~K~l 285 (333)
T 2af4_C 224 IASTKLAQELAPDIAIDGELQVDAAIVPKVAASKAPGSPVAGKANVFIFPDLNCGNIAYKIA 285 (333)
T ss_dssp HHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHHHSTTCSSTTSCCEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhcCCCCccCCcCCEEEECCchHHHHHHHHH
Confidence 34444444567887665 4567776644444 33 689999999999 88765443
No 30
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura genomics, JCSG, protein structure initiative, PSI, joint CE structural genomics; 2.32A {Escherichia coli} SCOP: c.77.1.5
Probab=82.36 E-value=2.4 Score=29.91 Aligned_cols=51 Identities=25% Similarity=0.416 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCceec-hhhHHHHHHHHhh------CC--CCccEEecCCch-HHHHHhh
Q psy9334 8 PNLGQTMAKLYPKIQFE-QMIVDNCTMQIVS------NP--HQFDVMVMPNLY-GNIVDNL 58 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~-~~~vDa~~~~lv~------~P--~~fDVIV~~Nl~-GDIlSD~ 58 (65)
++..+...+++|++.++ ++-.|++...=+. .| .++||+|+||++ |+|.-=+
T Consensus 231 ~~A~~llk~~~~~~~v~Gpl~~D~A~~~~~~~~k~~~s~~~G~aDvlV~Pd~d~GNI~~K~ 291 (355)
T 1vmi_A 231 QQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIGYKI 291 (355)
T ss_dssp HHHHHHHHHHCTTSEEEEEECHHHHHCHHHHHHHCTTCTTTTCCSEEECSSHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCEEEeCCChHHhhCHHHHhhcCCCCccCCCCCEEEECChhHHhHHHHH
Confidence 44444445567876654 4457766644443 22 679999999999 8876544
No 31
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.75A {Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Probab=78.11 E-value=5.1 Score=27.76 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=33.5
Q ss_pred HHHHHHHHhhCCCceec-hhhHHHHHHHHhh------C--CCCccEEecCCch-HHHHHhhh
Q psy9334 8 PNLGQTMAKLYPKIQFE-QMIVDNCTMQIVS------N--PHQFDVMVMPNLY-GNIVDNLA 59 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~-~~~vDa~~~~lv~------~--P~~fDVIV~~Nl~-GDIlSD~a 59 (65)
++..+...+++|++.++ ++-.|++...=++ + -.++||+|+||++ |+|.-=+.
T Consensus 224 ~~A~~ll~~~~~~~~v~Gpl~~D~a~~~~~~~~k~~~s~~~G~aDvlV~pd~d~GNI~~K~l 285 (329)
T 1td9_A 224 ADAVKIAKEKAPELTLDGEFQFDAAFVPSVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIA 285 (329)
T ss_dssp HHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHHCTTSSCSSCCSEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCEEEeCCcHHHHcCHHHHHhhCCCCccCCCCCEEEECChhHHHHHHHHH
Confidence 34444445567877664 4567776644443 2 2689999999998 77765443
No 32
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=74.70 E-value=0.67 Score=27.52 Aligned_cols=40 Identities=20% Similarity=0.481 Sum_probs=28.6
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCC
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~N 49 (65)
||+.+ ....+++|++||++++-...+|.. +++|.|-..|-
T Consensus 37 ~C~~~-~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~v~~~PT 76 (118)
T 3evi_A 37 MCLLV-NQHLSLLARKFPETKFVKAIVNSC-------IQHYHDNCLPT 76 (118)
T ss_dssp HHHHH-HHHHHHHHHHCTTSEEEEEEGGGT-------STTCCGGGCSE
T ss_pred HHHHH-HHHHHHHHHHCCCCEEEEEEhHHh-------HHHCCCCCCCE
Confidence 56654 457788999999988888778763 57777654443
No 33
>2peb_A Putative dioxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.46A {Nostoc punctiforme}
Probab=74.62 E-value=4.5 Score=25.25 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=31.8
Q ss_pred CceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHh
Q psy9334 20 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDN 57 (65)
Q Consensus 20 dV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD 57 (65)
+|.+.....++..-+|..|-+.++|.|-||- ||=+.|
T Consensus 58 qv~f~~~~f~~~v~WL~lnrg~LsVLiHP~T-gddl~D 94 (122)
T 2peb_A 58 QVAFLPNQFDKVVPWLMLNREGLDILVHPET-GDAVSD 94 (122)
T ss_dssp EEEECGGGHHHHHHHHHHHCTTCCEEEEEES-SCHHHH
T ss_pred EEEcCHHHHHHHHHHHHHhCCCceEEECCCC-Cchhhh
Confidence 5778888899999999999999999999998 665544
No 34
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=74.59 E-value=3.9 Score=25.29 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=31.2
Q ss_pred CceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHh
Q psy9334 20 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDN 57 (65)
Q Consensus 20 dV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD 57 (65)
+|.+.....++..-+|..|-+.++|.|-||- ||=+.|
T Consensus 61 qv~f~~~~f~~~v~WL~~nrg~LsVLiHP~T-gddl~D 97 (117)
T 2p8i_A 61 QLAFTQEQFADLVGWLTLNHGALDIFLHPNT-GDALRD 97 (117)
T ss_dssp EEEECHHHHHHHHHHHHHHCTTCCEEEEEES-SCHHHH
T ss_pred EEEcCHHHHHHHHHHHHHhCCCCeEEEcCCC-Cchhhh
Confidence 3677777899999999999999999999998 665554
No 35
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=73.06 E-value=2.6 Score=30.88 Aligned_cols=47 Identities=15% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHH
Q psy9334 8 PNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNI 54 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDI 54 (65)
.++|++-|++.+.++++....|+-...--.++++||||++..++--+
T Consensus 101 i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ehv 147 (569)
T 4azs_A 101 INVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHHI 147 (569)
T ss_dssp HHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHHH
T ss_pred HHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhcC
Confidence 35677777776654444444333211112368899999998887543
No 36
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp}
Probab=72.43 E-value=6.1 Score=26.49 Aligned_cols=45 Identities=7% Similarity=0.049 Sum_probs=31.4
Q ss_pred hHHHHHHHHHhhCCCceechhhH---HHHHHHH---hhCCCCccEEecCCc
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV---DNCTMQI---VSNPHQFDVMVMPNL 50 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v---Da~~~~l---v~~P~~fDVIV~~Nl 50 (65)
.+.+++++..+++|+|+++...+ +....+| +..-..+||+...+-
T Consensus 42 ~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~~sg~~pDv~~~~~~ 92 (414)
T 3quf_A 42 QIGEVVKGFEKKNPDITLDVQYGQDPAQYISTLQTRLAGGKPPTIFNLTMD 92 (414)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHSSSCCSEEEECTT
T ss_pred HHHHHHHHHHHHCcCeEEEEEeCCChHHHHHHHHHHHhCCCCCCEEEECCc
Confidence 46788888889999998887764 4443333 333558899987653
No 37
>3bvr_A NOTI restriction endonuclease; protein-DNA complex; HET: DNA; 2.50A {Nocardia otitidiscaviarum} PDB: 3bvq_A* 3c25_A*
Probab=70.65 E-value=1.1 Score=32.64 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=22.0
Q ss_pred hhCCCCccEEecCCch--HHHHHhhhhhccC
Q psy9334 36 VSNPHQFDVMVMPNLY--GNIVDNLASDIKG 64 (65)
Q Consensus 36 v~~P~~fDVIV~~Nl~--GDIlSD~aa~l~G 64 (65)
+.+++.||||++||.+ +.|++|.+.-..|
T Consensus 70 ~~d~ePydvIiCPiRL~dy~il~~~s~~~Fg 100 (383)
T 3bvr_A 70 AVDNERYDWLVCPNRALDPLFMSAASRKLFG 100 (383)
T ss_dssp EETTEEEEEECCGGGGCCHHHHHHHHHHHHT
T ss_pred cCCCCCceEEEcccccccHHHHHHHHHHhcC
Confidence 4567889999999988 6678887755443
No 38
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like nucleotide-binding fold, structural genomics, BSGC structure funded by NIH; 2.70A {Streptococcus pyogenes} SCOP: c.77.1.5
Probab=70.12 E-value=7.7 Score=26.75 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCceec-hhhHHHHHHHHhhC--------CCCccEEecCCch-HHHHHhhh
Q psy9334 8 PNLGQTMAKLYPKIQFE-QMIVDNCTMQIVSN--------PHQFDVMVMPNLY-GNIVDNLA 59 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~-~~~vDa~~~~lv~~--------P~~fDVIV~~Nl~-GDIlSD~a 59 (65)
++..+...+++|++.++ ++-.|++...=+++ -.++||+|+||++ |.|.-=+.
T Consensus 228 ~~A~~llk~~~~~~~v~Gpl~~D~a~~~~~~~~k~~~s~~~G~aDvlv~p~~d~GnI~~K~l 289 (337)
T 1r5j_A 228 REATEIATGLNPDLALDGELQFDAAFVPETAAIKAPDSAVAGQANTFVFPDLQSGNIGYKIA 289 (337)
T ss_dssp HHHHHHHHHHCTTSCEEEEECHHHHHCHHHHHHHSCSCSSTTCCCEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcEEEecCcHHHhcCHHHHHhhCCCCccCCCCCEEEECChHHHHHHHHHH
Confidence 44555555567876654 34567775443331 2689999999998 77765443
No 39
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=69.94 E-value=9.6 Score=24.85 Aligned_cols=45 Identities=11% Similarity=0.195 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhCCCceechhh--HHHHHHHHhhCCCCccEEecCCc
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMI--VDNCTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~--vDa~~~~lv~~P~~fDVIV~~Nl 50 (65)
.+.++.++..++||+|+++..+ -..+..++...-..+||+++.+.
T Consensus 18 ~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (296)
T 3cfx_A 18 PFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 64 (296)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEECCHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHCCCceEEEEeCchHHHHHHHHhCCCCCcEEEECCh
Confidence 4566777777788988777554 34455677662346999998764
No 40
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=69.37 E-value=5.8 Score=26.28 Aligned_cols=44 Identities=14% Similarity=0.044 Sum_probs=30.5
Q ss_pred hHHHHHHHHHhhCCCceechhhH--HHHHHHHhhC----CCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVSN----PHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~----P~~fDVIV~~N 49 (65)
.+.++.++..++||+|+++.... +....+|.+. -..+||+...+
T Consensus 46 ~~~~~~~~Fe~~~Pgi~V~~~~~~~~~~~~kl~~~~~ag~~~~DV~~~~~ 95 (355)
T 3c9h_A 46 LATPMIEGFQKANPDIAVHYEDMLTGEIYDRIVKETDAGKKTADFAFSSA 95 (355)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHHHHTTCCBCSEEEESC
T ss_pred HHHHHHHHHHHHCcCeEEEEEeCChHHHHHHHHHHHhcCCCCCCEEEecc
Confidence 46778888888999988887665 3344555432 24689998776
No 41
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=67.51 E-value=12 Score=24.32 Aligned_cols=45 Identities=7% Similarity=0.144 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhhCCCceechhh--HHHHHHHHhhCCCCccEEecCCc
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMI--VDNCTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~--vDa~~~~lv~~P~~fDVIV~~Nl 50 (65)
.+.++.++..++||+|+++..+ -..+..++...-..+||+++.+.
T Consensus 18 ~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (295)
T 3cij_A 18 PMKAFKRAFEEKHPNVEVQTEAAGSAATIRKVTELGRKADVIATADY 64 (295)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHCCCceEEEEeCcHHHHHHHHHhCCCCCCEEEEcCh
Confidence 4566777777788988877554 34455666652346999998764
No 42
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1
Probab=64.74 E-value=5.3 Score=26.62 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=28.6
Q ss_pred hHHHHHHHHHhhCCCceechhhHHHHHHHHhh---CCCCccEEecC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVS---NPHQFDVMVMP 48 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~---~P~~fDVIV~~ 48 (65)
.+.+++++..+++|+|+++...++..-.+|.+ .-..+||+...
T Consensus 21 ~~~~~i~~F~~~~p~i~V~~~~~~~~~~kl~~~~~~g~~PDv~~~~ 66 (381)
T 1elj_A 21 VFQSLAEEYMALCPEVEIVFEQKPNLEDALKAAIPTGQGPDLFIWA 66 (381)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECTTHHHHHHHHTTTTCSCSEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEEEECCcHHHHHHHHHhcCCCCcEEEeC
Confidence 46677888888899998887765543333432 33458987654
No 43
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
Probab=63.06 E-value=12 Score=25.18 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=30.2
Q ss_pred chHHHHHHHHHhhCCCceechhhHHHH----HHHHhhCCCCccEEec-C
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIVDNC----TMQIVSNPHQFDVMVM-P 48 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~vDa~----~~~lv~~P~~fDVIV~-~ 48 (65)
..|++++++..+++|+|+++...++.. ...+.. -..+||+.. +
T Consensus 32 ~~~~~~~~~f~~~~p~i~V~~~~~~~~~~kl~~~~~~-g~~pDv~~~~~ 79 (401)
T 2heu_A 32 KTLEEITRDFEKENPKIKVKVVNVPNAGEVLKTRVLA-GDVPDVVNIYP 79 (401)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEECCTTHHHHHHHHHHT-TCCCSEEECCT
T ss_pred HHHHHHHHHHHHHCcCeEEEEEeCCcHHHHHHHHHhc-CCCCCEEEecC
Confidence 357788888888999998887765442 233333 367899988 5
No 44
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A*
Probab=62.42 E-value=11 Score=25.34 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=29.2
Q ss_pred chHHHHHHHHHhhCCCceechhhH-----HHHHHHHh---hCCCCccEEecC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIV-----DNCTMQIV---SNPHQFDVMVMP 48 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~v-----Da~~~~lv---~~P~~fDVIV~~ 48 (65)
..|++++++..+++|+|+++...+ |....+|. ..-..+||+...
T Consensus 15 ~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~ 66 (400)
T 2b3f_A 15 PALEALIRLYKQKYPGVEVINATVTGGAGVNARAVLKTRMLGGDPPDTFQVH 66 (400)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECCCGGGHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEecCCCcchhHHHHHHHHHhCCCCCCEEeec
Confidence 457788888888999998886654 33333332 233457998775
No 45
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=61.66 E-value=6 Score=23.07 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=28.6
Q ss_pred chHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~N 49 (65)
..+-....+..++||+|+++-..-|.. .. +.+ +++|+.++..
T Consensus 20 ~~l~~~l~~f~~~~P~v~l~i~~~~~~-~~-l~~-g~~D~~i~~~ 61 (213)
T 3hhf_B 20 HLLAPLAAKFNERYPHIRLSLVSSEGY-IN-LIE-RKVDIALRAG 61 (213)
T ss_dssp HTHHHHHHHHHHHCTTEEEEEECCSTT-HH-HHT-TSSSEEEECC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCCcH-HH-HHh-CCccEEEEEe
Confidence 345567788899999988876644433 34 344 7899877654
No 46
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=61.18 E-value=18 Score=23.42 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=30.2
Q ss_pred hHHHHHHHHHhhCCCceechhh--HHHHHHHHhhCCCCccEEecCCc
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMI--VDNCTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~--vDa~~~~lv~~P~~fDVIV~~Nl 50 (65)
.+.++.++..++||+|+++..+ -..+..++...-..+||+++.+.
T Consensus 18 ~~~~l~~~F~~~~~gi~V~~~~~~s~~l~~~i~~~g~~~Dv~~~a~~ 64 (292)
T 3cfz_A 18 PFEEYEKMFEKEHPNVDVEREPAGSVACVRKIIDLGKKADILASADY 64 (292)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHCCCceEEEEeCCHHHHHHHHHhcCCCCcEEEECCh
Confidence 3556666667778988877554 33455667662446999998764
No 47
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=58.77 E-value=6.7 Score=26.86 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCceec-hhhHHHHHHHHhh------CC--CCccEEecCCch-HHHHHhhhhhc
Q psy9334 19 PKIQFE-QMIVDNCTMQIVS------NP--HQFDVMVMPNLY-GNIVDNLASDI 62 (65)
Q Consensus 19 pdV~~~-~~~vDa~~~~lv~------~P--~~fDVIV~~Nl~-GDIlSD~aa~l 62 (65)
|++.++ ++-.|++.-.=++ ++ .+.||+|+||+| |+|+-=+...+
T Consensus 181 ~~~~~dG~i~~D~A~~~~~~~~k~~~s~~~G~adVlV~Pd~~aGNi~~K~~~~~ 234 (279)
T 1yco_A 181 QEATVFGPLSLDLATSEEAVAHKRYSGPIMGDADILVVPTIDVGNCLYKSLTLF 234 (279)
T ss_dssp SSCEEEEEECHHHHHCHHHHHHTTCCSSCSSCCSEEECSSHHHHHHHHHHHHHH
T ss_pred CCCEEEeeCcHHhhcCHHHHHhcCCCCccCCCCCEEEECCchHHHHHHHHHHHh
Confidence 666554 3445766533333 32 567999999997 88876555433
No 48
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV}
Probab=56.74 E-value=10 Score=26.18 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=30.1
Q ss_pred chHHHHHHHHHhhCCCceechhhH------HHHHHHHhhCCCCccEEecCC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIV------DNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~v------Da~~~~lv~~P~~fDVIV~~N 49 (65)
..+.+++++..++||+|+++...+ +.+...+... ..+||+...+
T Consensus 42 ~~~~~~~~~F~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg-~~pDv~~~~~ 91 (458)
T 3uor_A 42 EVVAELVADFEKQNPTIHVDVQNIPMTAAHEKLLTAFAAD-GLPDVCQLGN 91 (458)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHHHHHTT-CCCSEEEEET
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEcChHHHHHHHHHHHhCC-CCCCEEEECc
Confidence 357788888899999998887654 2333333333 4799988765
No 49
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=56.67 E-value=12 Score=26.24 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=32.9
Q ss_pred chHHHHHHHHHhhCCCceechhhHHH--HHHHHhhCCCCccEEecCCc
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIVDN--CTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~vDa--~~~~lv~~P~~fDVIV~~Nl 50 (65)
..|.++.++..+++|+|+++..+--+ +..+++.+-..+||+++.+.
T Consensus 55 ~~~~~l~~~Fe~~~pgv~V~~~~ggSg~l~~qi~e~G~~aDVf~sad~ 102 (354)
T 3k6v_A 55 VPFEELEAEFEAQHPGVDVQREAAGSAQSVRKITELGKKADVLASADY 102 (354)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhcCCCccEEEECCH
Confidence 34667777778888998887776554 44566556678999988764
No 50
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli}
Probab=54.96 E-value=18 Score=23.87 Aligned_cols=44 Identities=7% Similarity=0.039 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhhCCCceechhhH---HHHHHHHhh---CCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV---DNCTMQIVS---NPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v---Da~~~~lv~---~P~~fDVIV~~N 49 (65)
.+.+++++.-++||+|+++.... +....++++ --.-.||+...+
T Consensus 21 ~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~~~~aa~~sg~~PDv~~~~~ 70 (419)
T 4aq4_A 21 EVDSLAQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYE 70 (419)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHHHHTTCCCSEEEEEG
T ss_pred HHHHHHHHHHHHCcCeEEEEEeCCCHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 35667777778899999886643 333334433 345569887643
No 51
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=54.71 E-value=13 Score=21.76 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhhCCCceechhhHHHH-HHHHhhCCCCccEEec
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIVDNC-TMQIVSNPHQFDVMVM 47 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~vDa~-~~~lv~~P~~fDVIV~ 47 (65)
...-+...+..++||+|+++-...+.. ..+.+.+ +++|+.+.
T Consensus 18 ~~l~~~l~~f~~~~P~i~i~l~~~~~~~l~~~l~~-g~~Dl~i~ 60 (209)
T 2ql3_A 18 TILPSMLYAFTAEYPRASVEFREDTQNRLRTQLEG-GELDVAIV 60 (209)
T ss_dssp TTHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHT-TSCSEEEE
T ss_pred hhHHHHHHHHHHHCCCceEEEEECcHHHHHHHHHc-CCccEEEE
Confidence 345577888899999988775543332 2233333 56786654
No 52
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=54.34 E-value=5.9 Score=22.99 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=19.7
Q ss_pred chhchHHHHHHHHHhhCC-CceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYP-KIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~yp-dV~~~~~~vD 29 (65)
||+ .|..+.+++|++|. .+.+-...+|
T Consensus 36 ~c~-~~~p~l~~~A~~~~gk~~f~~vd~d 63 (133)
T 2djk_A 36 ERK-ELSDKLKPIAEAQRGVINFGTIDAK 63 (133)
T ss_dssp SHH-HHHHHHHHHHHSSTTTSEEEEECTT
T ss_pred hHH-HHHHHHHHHHHHhCCeEEEEEEchH
Confidence 565 78899999999996 4555554454
No 53
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=52.95 E-value=34 Score=21.38 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=27.4
Q ss_pred HHHHHHHHhhCCCceech--------hhHHHHHHHHhhCCCCccEEecCCc
Q psy9334 8 PNLGQTMAKLYPKIQFEQ--------MIVDNCTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~~--------~~vDa~~~~lv~~P~~fDVIV~~Nl 50 (65)
.+-+++..+++|++++.. .-.-..+.++++...++|.|++.|=
T Consensus 154 ~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 204 (293)
T 3l6u_A 154 HRGFLKGIENEPTLSIVDSVSGNYDPVTSERVMRQVIDSGIPFDAVYCHND 204 (293)
T ss_dssp HHHHHHHHTTCTTEEEEEEEECTTCHHHHHHHHHHHHHTTCCCSEEEESSH
T ss_pred HHHHHHHHHhCCCcEEeeeccCCCCHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 345556666777776542 1222345677777678999999874
No 54
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A*
Probab=52.20 E-value=17 Score=24.31 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=30.1
Q ss_pred chHHHHHHHHHhhCCCceechhhHH--HHHHHH---hhCCC-CccEEecCC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIVD--NCTMQI---VSNPH-QFDVMVMPN 49 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~vD--a~~~~l---v~~P~-~fDVIV~~N 49 (65)
..+++++++..++||+|+++...++ ....+| +.... .+||+...+
T Consensus 42 ~~~~~~~~~f~~~~pgi~V~~~~~~~~~~~~kl~~~~~sg~~~pDv~~~~~ 92 (412)
T 3k01_A 42 ATYQALAEGFEKEHPKVDVKYVNVPFGEANAKFKNAAGGNSGAPDVMRTEV 92 (412)
T ss_dssp HHHHHHHHTHHHHCTTEEEEEEECCHHHHHHHHHHHHHTTSSCCSEEEEEH
T ss_pred HHHHHHHHHHHHHCcCeEEEEEecChHHHHHHHHHHHhcCCCCCCEEEecC
Confidence 4577888888899999988876542 222222 23445 699998743
No 55
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor}
Probab=51.95 E-value=18 Score=24.10 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=29.6
Q ss_pred chHHHHHHHHHhhCCCceechhhH-----HHHHHHHhhCCCCccEEecC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIV-----DNCTMQIVSNPHQFDVMVMP 48 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~v-----Da~~~~lv~~P~~fDVIV~~ 48 (65)
..+.+++++..++||+|+++...+ +.+...+ ..-..+||+...
T Consensus 24 ~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~kl~~~~-~sg~~pDv~~~~ 71 (405)
T 3i3v_A 24 PTYLAAVDRFREENPGVKIKNLVNGDDLAQVYETSR-LARKEADVVMVN 71 (405)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEECSTTHHHHHHHHH-HTTCCCSEEEEC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECcHHHHHHHHHHH-HCCCCCcEEEec
Confidence 457788888888999988776644 3344444 334568999884
No 56
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=51.47 E-value=17 Score=23.48 Aligned_cols=45 Identities=7% Similarity=0.064 Sum_probs=28.6
Q ss_pred hHHHHHHHHH---hhCCCceech--hh--HHHHHHHHhhCCCCccEEecCCc
Q psy9334 6 GYPNLGQTMA---KLYPKIQFEQ--MI--VDNCTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 6 ~f~~~~~eva---~~ypdV~~~~--~~--vDa~~~~lv~~P~~fDVIV~~Nl 50 (65)
.+.++.++.. ++||+|+++. .+ -..+..++...-..+||++..+.
T Consensus 18 ~~~~~~~~F~~~~~~~~gi~V~~~~~~~~s~~l~~~i~~~g~~~Dv~~~~~~ 69 (296)
T 3cg1_A 18 PFQEVEKEFSEYAERNLGIKVSFQDEASGSVMAVRKVTDLGRKADVIGVADY 69 (296)
T ss_dssp HHHHHHHHHHHHHHHHHSCCEEEEEEEECHHHHHHHHHTSCCCCSEEEESST
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeecCCHHHHHHHHHhCCCCCCEEEECCh
Confidence 3556666666 7778877765 33 34455666652346999988763
No 57
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=51.47 E-value=15 Score=25.35 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=33.4
Q ss_pred HHHHhhC-CCceech-hhHHHHHHHHhh------C--CCCccEEecCCc-hHHHHHhhhhhcc
Q psy9334 12 QTMAKLY-PKIQFEQ-MIVDNCTMQIVS------N--PHQFDVMVMPNL-YGNIVDNLASDIK 63 (65)
Q Consensus 12 ~eva~~y-pdV~~~~-~~vDa~~~~lv~------~--P~~fDVIV~~Nl-~GDIlSD~aa~l~ 63 (65)
.++.++. |+..++- +-.|++.-.=+. . -++.||+|.||+ =|+|+--+...+.
T Consensus 189 ~~llk~~~~~~~vdGel~~D~Al~~~~~~~k~p~s~vaG~Anvli~P~l~agNi~yK~l~~~~ 251 (291)
T 3uf6_A 189 QEVVQHFGNQISVSGPLALDVAISKEAALHKGITDSSAGEADILIAPNIETGNALYKSLVYFA 251 (291)
T ss_dssp HHHHHHHTTTSCEEEEECHHHHHCHHHHHHTTCCCTTTTCCSEEECSSHHHHHHHHHHHHHHS
T ss_pred HHHHHhhCCCCEEEecchHHHhcCHHHHHhhCCCCccCCCCCEEEECChHHHHHHHHHHHHhc
Confidence 3445554 8877765 457877533322 1 257899999999 5888876655433
No 58
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A*
Probab=50.89 E-value=28 Score=23.36 Aligned_cols=43 Identities=14% Similarity=0.079 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhhCCCceechhhH--------HHHHHHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV--------DNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v--------Da~~~~lv~~P~~fDVIV~~N 49 (65)
.+++++++..++||+|+++...+ +.+...+... ..+||+...+
T Consensus 32 ~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~kl~~~~~sg-~~pDv~~~~~ 82 (412)
T 2z8f_A 32 LVNDIVAKWNKQHPDIQVKATKFDGKASDMIKKLETDVKSG-EAPDLAQVGY 82 (412)
T ss_dssp CHHHHHHHHHHHCTTEEEEEEECSSCGGGHHHHHHHHHHHT-CCCSEEEEEG
T ss_pred HHHHHHHHHHHHCCCceEEEEecCCchhhHHHHHHHHHhcC-CCCcEEEeCc
Confidence 57888889989999988876544 3333344444 4789987754
No 59
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=46.96 E-value=14 Score=22.32 Aligned_cols=44 Identities=18% Similarity=0.235 Sum_probs=27.3
Q ss_pred chHHHHHHHHHhhCCCceechhhH--HHHHHHHhhCCCCccEEecCCc
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~P~~fDVIV~~Nl 50 (65)
..+-+...+..++||+|+++-... +.+...|.. +++|+.++..-
T Consensus 40 ~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~--g~~Dl~i~~~~ 85 (238)
T 3onm_A 40 TLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSS--GEVDLAITTAK 85 (238)
T ss_dssp THHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHH--TSCSEEEECSC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHC--CCccEEEEecC
Confidence 345567788889999987665433 333344443 46787776543
No 60
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=46.75 E-value=34 Score=19.58 Aligned_cols=33 Identities=15% Similarity=0.184 Sum_probs=17.9
Q ss_pred CceechhhHHHHHHHHhhCCCCccEEecCCchH
Q psy9334 20 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYG 52 (65)
Q Consensus 20 dV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~G 52 (65)
.+++...-+......+-..+++||+|++...|+
T Consensus 89 ~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~ 121 (171)
T 1ws6_A 89 GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA 121 (171)
T ss_dssp CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT
T ss_pred ceEEEeccHHHHHHhhhccCCceEEEEECCCCc
Confidence 344443333332223334456899999886663
No 61
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=45.90 E-value=21 Score=22.39 Aligned_cols=43 Identities=7% Similarity=0.200 Sum_probs=24.5
Q ss_pred HHHHHHHHhhCCCce-echhh-------HH---HHHHHHhhC-CC--CccEEecCCc
Q psy9334 8 PNLGQTMAKLYPKIQ-FEQMI-------VD---NCTMQIVSN-PH--QFDVMVMPNL 50 (65)
Q Consensus 8 ~~~~~eva~~ypdV~-~~~~~-------vD---a~~~~lv~~-P~--~fDVIV~~Nl 50 (65)
.+-+++..+++|+++ ++..+ .+ ..+.++++. |+ ++|.|++.|=
T Consensus 144 ~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~~~~d 200 (291)
T 3l49_A 144 YDQMKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIWACWD 200 (291)
T ss_dssp HHHHHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEEESSH
T ss_pred HHHHHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEEECCC
Confidence 345556666777766 33221 11 334555554 43 8999999873
No 62
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=45.76 E-value=21 Score=21.93 Aligned_cols=42 Identities=10% Similarity=-0.015 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhhCCCceechhhH--HHHHHHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~P~~fDVIV~~N 49 (65)
.+.++..+..++||+|+++-... +....+|.. ++.|+.++..
T Consensus 41 ~l~~~l~~f~~~~P~i~v~i~~~~~~~~~~~l~~--g~~Di~i~~~ 84 (290)
T 1twy_A 41 IMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKK--GVADIAMTSR 84 (290)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHT--TSCSEEEESS
T ss_pred HHHHHHHHHHhhCCCceEEEEecCcHHHHHHHhc--CCCcEEEecC
Confidence 45567788889999987765443 333344443 4689877643
No 63
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B*
Probab=45.29 E-value=23 Score=24.27 Aligned_cols=41 Identities=12% Similarity=0.164 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhhCCCceechhhHH------HHHHHHhhCCCCccEEec
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVD------NCTMQIVSNPHQFDVMVM 47 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vD------a~~~~lv~~P~~fDVIV~ 47 (65)
.|++++++.-++||+|+++...++ .+...+. --.-+||+..
T Consensus 79 ~~~~~i~~F~~~~p~I~V~~~~~~~~~~~~kl~~~~a-sg~~PDv~~~ 125 (456)
T 4g68_A 79 KVKEIIDQWNKENPNVQIVESVTENDAYKTKIKAAIA-ANEAPDIFQT 125 (456)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHH-TTCCCSEEEE
T ss_pred HHHHHHHHHHHHCcCeEEEEEECCcHHHHHHHHHHHh-CCCCCeEEEE
Confidence 467788888889999998866543 2223333 3456898854
No 64
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1
Probab=45.22 E-value=26 Score=22.27 Aligned_cols=43 Identities=5% Similarity=0.034 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhhC---CCceechh----hHHHHHHHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLY---PKIQFEQM----IVDNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~y---pdV~~~~~----~vDa~~~~lv~~P~~fDVIV~~N 49 (65)
.+.+++++..++| |+|+++.. --..+..++..+ ..+||+...+
T Consensus 16 ~~~~~~~~F~~~~~~~~gi~V~v~~~~~~s~~l~~~~~~g-~~~Dv~~~~~ 65 (310)
T 1sbp_A 16 LYEQYNKAFSAHWKQETGDNVVIDQSHGGSGKQATSVING-IEADTVTLAL 65 (310)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEEESCHHHHHHHHHTT-CCCSEEEESS
T ss_pred HHHHHHHHHHHHhhhCCCceEEEEeecCChHHHHHHHhcC-CCCCEEEeCc
Confidence 4555666665544 88655432 223344455443 5799998765
No 65
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A
Probab=44.43 E-value=47 Score=22.09 Aligned_cols=43 Identities=21% Similarity=0.105 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhCCCceechhhH------HHHHHHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV------DNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v------Da~~~~lv~~P~~fDVIV~~N 49 (65)
.+++.+++..++||+|+++...+ +.+...+... ..+||+....
T Consensus 21 ~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~kl~~~~~~g-~~PDv~~~~~ 69 (408)
T 2uvj_A 21 VTLKALEEFHKQHPNINVKAEYTGWDGHLSRLTTQIAGG-TEPDVMQTNW 69 (408)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEECSTTHHHHHHHHHHHT-CCCSEEEECG
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHHHHhCC-CCCcEEEech
Confidence 46778888888899988776544 3344444444 4689987754
No 66
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=44.40 E-value=37 Score=22.11 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCCCccEEecCCchHHHHHhh
Q psy9334 28 VDNCTMQIVSNPHQFDVMVMPNLYGNIVDNL 58 (65)
Q Consensus 28 vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~ 58 (65)
++.....|-.+|++-+||+|.|.--+=|-+.
T Consensus 140 ~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~ 170 (196)
T 1g5t_A 140 LEEVISALNARPGHQTVIITGRGCHRDILDL 170 (196)
T ss_dssp HHHHHHHHHTSCTTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHHHHhCcCCCEEEEECCCCcHHHHHh
Confidence 4667778888999999999999865544444
No 67
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=41.86 E-value=13 Score=21.65 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=26.5
Q ss_pred chHHHHHHHHHhhCCCceechh--hHHHHHHHHhhCCCCccEEecC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQM--IVDNCTMQIVSNPHQFDVMVMP 48 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~--~vDa~~~~lv~~P~~fDVIV~~ 48 (65)
..+.+...+..++||+++++-. .-+.+...|.. ++.|+.++.
T Consensus 17 ~~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~l~~--g~~Dl~i~~ 60 (219)
T 3jv9_A 17 YLLPKLIVSLRRTAPKMPLMLEENYTHTLTESLKR--GDVDAIIVA 60 (219)
T ss_dssp HHHHHHHHHHHHHSTTCCEEEEEECHHHHHHHHHH--TSSSEEEEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCCcHHHHHHHHc--CCCCEEEEc
Confidence 3455677888899998877654 34444444444 467866654
No 68
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=41.82 E-value=17 Score=21.37 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhhCCCceechh--hHHHHHHHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQM--IVDNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~--~vDa~~~~lv~~P~~fDVIV~~N 49 (65)
.+-....+..++||+|+++-. .-+.+...|.. +++|+.++..
T Consensus 25 ~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~--g~~Dl~i~~~ 68 (232)
T 3ho7_A 25 LLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLS--GEIDMAIIAS 68 (232)
T ss_dssp HHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHH--TSCSEEEESS
T ss_pred hhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHc--CCCCEEEEcC
Confidence 345667788889999877664 34444445544 4678776654
No 69
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=41.22 E-value=56 Score=20.02 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhCCCceech--------hhHHHHHHHHhhCCCCccEEecCCc
Q psy9334 7 YPNLGQTMAKLYPKIQFEQ--------MIVDNCTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 7 f~~~~~eva~~ypdV~~~~--------~~vDa~~~~lv~~P~~fDVIV~~Nl 50 (65)
..+-+++..+++|++++.. ...-..+.++++...++|.|++.|=
T Consensus 145 R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d 196 (276)
T 3ksm_A 145 REQGFLDVLRKHDKIRIIAAPYAGDDRGAARSEMLRLLKETPTIDGLFTPNE 196 (276)
T ss_dssp HHHHHHHHHTTCTTEEEEECCBCCSSHHHHHHHHHHHHHHCSCCCEEECCSH
T ss_pred HHHHHHHHHHhCCCcEEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEECCc
Confidence 3445556666777765432 1122344566665567899999874
No 70
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1
Probab=40.68 E-value=38 Score=22.52 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=28.7
Q ss_pred chHHHHHHHHHhhCCCceechhhH--------HHHHHHHhhCCCCccEEecCC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIV--------DNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~v--------Da~~~~lv~~P~~fDVIV~~N 49 (65)
..+.+.+++..+++|+|+++...+ +.+...+...-.-|||+...+
T Consensus 18 ~~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~~kl~~~~aag~~P~Dv~~~~~ 70 (409)
T 1eu8_A 18 EYWKGVIAEFEKKYPGVTVELKRQATDTEQRRLDLVNALRGKSSDPDVFLMDV 70 (409)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECCSSHHHHHHHHHHHHTTTCSSEEEEEEET
T ss_pred HHHHHHHHHHHHHCCCeEEEEEECChhhhHHHHHHHHHHhcCCCCCCEEEEcc
Confidence 346778888888999988876554 233334433322269887764
No 71
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=40.45 E-value=41 Score=19.56 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=19.4
Q ss_pred CceechhhHHHHHHHHhhCCCCccEEecCCchH
Q psy9334 20 KIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYG 52 (65)
Q Consensus 20 dV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~G 52 (65)
.+++...-+......+-..++.||+|++..-|.
T Consensus 95 ~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~ 127 (187)
T 2fhp_A 95 KFEVRKMDANRALEQFYEEKLQFDLVLLDPPYA 127 (187)
T ss_dssp GEEEEESCHHHHHHHHHHTTCCEEEEEECCCGG
T ss_pred ceEEEECcHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 355544433333333444578999999876664
No 72
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=38.58 E-value=7.8 Score=23.96 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhCCCceechhhHH
Q psy9334 7 YPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 7 f~~~~~eva~~ypdV~~~~~~vD 29 (65)
|.+.+ +.++||+..++..|||
T Consensus 34 WLqAa--l~RKyp~~~f~~~YID 54 (111)
T 1xg8_A 34 WLQPL--LKRKYPNISFKYTYID 54 (111)
T ss_dssp HHHHH--HHHHCTTSCEEEEEEE
T ss_pred HHHHH--HhCcCCCCceEEEEEe
Confidence 66554 4678998766666655
No 73
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=38.56 E-value=36 Score=21.63 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=26.9
Q ss_pred chHHHHHHHHHhhCCCceechhh--HHHHHHHHhhCCCCccEEecC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMI--VDNCTMQIVSNPHQFDVMVMP 48 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~--vDa~~~~lv~~P~~fDVIV~~ 48 (65)
........+..++||+|+++-.. -+.....|.. +++|+.+..
T Consensus 103 ~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~--g~~Dlai~~ 146 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKE--GRIDAGFGR 146 (312)
T ss_dssp TTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHT--TSCSEEEES
T ss_pred hhHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHc--CCCCEEEEe
Confidence 34557778889999998777553 3334344433 578877654
No 74
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes}
Probab=38.31 E-value=14 Score=24.76 Aligned_cols=42 Identities=7% Similarity=0.063 Sum_probs=27.0
Q ss_pred chHHHHHHHHHhhCCCceechhhH-------HHHHHHHhhCCCCccEEec
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIV-------DNCTMQIVSNPHQFDVMVM 47 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~v-------Da~~~~lv~~P~~fDVIV~ 47 (65)
..|.+++++.-++||+|+++...+ +.+... +.--...||+.+
T Consensus 44 ~~~~~~i~~F~~~~p~i~V~~~~~~~~~~~~~kl~~~-~asg~~PDv~~~ 92 (433)
T 4gqo_A 44 KYWDEMAKAYEKENPDVTIEVSQMKESPSSEATIQSA-IASKTAPTMSEN 92 (433)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEECCCSSSHHHHHHHH-HHHTCCCSEEEE
T ss_pred HHHHHHHHHHHHHCcCeEEEEEEcCCcHHHHHHHHHH-HHCCCCCeEEEE
Confidence 357788888888999998876543 122222 333456798763
No 75
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=38.19 E-value=17 Score=21.86 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=26.7
Q ss_pred hHHHHHHHHHhhCCCceechhhH--HHHHHHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~P~~fDVIV~~N 49 (65)
.+-....+..++||+|+++-... +.+. +.+.+ +++|+.++..
T Consensus 33 ~l~~~l~~f~~~~P~i~l~~~~~~~~~~~-~~l~~-g~~Dl~i~~~ 76 (241)
T 3oxn_A 33 ILPFALPRIYQEAPNVSFNFLPLQHDRLS-DQLTY-EGADLAICRP 76 (241)
T ss_dssp THHHHHHHHHHHCTTCEEEEEECCGGGHH-HHHHT-SCCSEEEECC
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCcccHH-HHHHc-CCCCEEEecC
Confidence 44567788889999987765443 3333 33333 6788777753
No 76
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=37.91 E-value=33 Score=21.80 Aligned_cols=50 Identities=10% Similarity=0.058 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCC-CceechhhHHHHHHHHhhC-CCCccEEecCCchHHHHHh
Q psy9334 7 YPNLGQTMAKLYP-KIQFEQMIVDNCTMQIVSN-PHQFDVMVMPNLYGNIVDN 57 (65)
Q Consensus 7 f~~~~~eva~~yp-dV~~~~~~vDa~~~~lv~~-P~~fDVIV~~Nl~GDIlSD 57 (65)
+++.+++++++|. ++.+..-..+... ..+++ ++.+|||++----+.+|-+
T Consensus 16 l~~~~~~i~~e~~~~i~i~~~~l~~~v-~~a~~~~~~~dVIISRGgta~~lr~ 67 (196)
T 2q5c_A 16 LLNLFPKLALEKNFIPITKTASLTRAS-KIAFGLQDEVDAIISRGATSDYIKK 67 (196)
T ss_dssp HHHHHHHHHHHHTCEEEEEECCHHHHH-HHHHHHTTTCSEEEEEHHHHHHHHT
T ss_pred HHHHHHHHHhhhCCceEEEECCHHHHH-HHHHHhcCCCeEEEECChHHHHHHH
Confidence 3447777877754 5555544455433 22222 6889999997777766654
No 77
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=37.13 E-value=22 Score=22.16 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=25.3
Q ss_pred hHHHHHHHHHhhCCCceechhhHHH--HHHHHhhCCCCccEEecC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVDN--CTMQIVSNPHQFDVMVMP 48 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vDa--~~~~lv~~P~~fDVIV~~ 48 (65)
.+.....+..++||+|+++-...+. ....|.. +++|+.+..
T Consensus 109 ~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~--g~~Dl~i~~ 151 (306)
T 3fzv_A 109 YLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTS--GRFDLAFLY 151 (306)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHH--TSCSEEEEC
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHC--CCccEEEEe
Confidence 3446777888999998776544333 3334443 457766654
No 78
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae}
Probab=36.94 E-value=63 Score=21.64 Aligned_cols=43 Identities=14% Similarity=0.033 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhCCCceechhhH-------HHHHHHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV-------DNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v-------Da~~~~lv~~P~~fDVIV~~N 49 (65)
.+.+++++..++||+|+++...+ +.+...+. .-..+||+...+
T Consensus 58 ~~~~~~~~f~~~~p~i~V~~~~~~~~~~~~~kl~~~~a-~g~~pDv~~~~~ 107 (430)
T 2w7y_A 58 TMRDLYDKFAEEHKDSGVEFKPTPVNGDLKDIMNNKVA-SGEFPDVIDLAG 107 (430)
T ss_dssp HHHHHHHHHHHHC--CCSEEEEEECSSCHHHHHHHHHT-TTCCCSEEECTT
T ss_pred HHHHHHHHHHHHCCCceEEEEeCCCCccHHHHHHHHHh-CCCCCcEEEeCC
Confidence 46677788888899876654332 23333333 335689988763
No 79
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=36.90 E-value=22 Score=21.23 Aligned_cols=41 Identities=12% Similarity=0.332 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhCCCceechhhH--HHHHHHHhhCCCCccEEecC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVSNPHQFDVMVMP 48 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~P~~fDVIV~~ 48 (65)
..-+...+..++||+|+++-... +.....|.. ++.|+.+..
T Consensus 28 ~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~--g~~Dl~i~~ 70 (228)
T 2fyi_A 28 SLPEVIKAFRELFPEVRLELIQGTPQEIATLLQN--GEADIGIAS 70 (228)
T ss_dssp THHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHH--TSCSEEEES
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHc--CCccEEEEe
Confidence 44567778899999988765543 333333333 567766653
No 80
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=36.33 E-value=21 Score=21.42 Aligned_cols=38 Identities=8% Similarity=-0.061 Sum_probs=19.3
Q ss_pred HhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchH
Q psy9334 15 AKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYG 52 (65)
Q Consensus 15 a~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~G 52 (65)
+++.+.+.+....+............+||+|++.+.+-
T Consensus 90 a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 90 ARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp HHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred HHHhcccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 33335555444443333222223344599999877653
No 81
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=35.68 E-value=13 Score=23.21 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~N 49 (65)
.+.....+..++||+|+++-..- .....|. + +++|+.+...
T Consensus 107 ~l~~~l~~f~~~~P~v~i~l~~~-~~~~~l~-~-~~~Dl~i~~~ 147 (306)
T 3hhg_A 107 LLAPLAAKFNERYPHIRLSLVSS-EGYINLI-E-RKVDIALRAG 147 (306)
T ss_dssp THHHHHHHHHHHCTTEEEEEECC-SSSHHHH-T-TSSSCEEESC
T ss_pred HHHHHHHHHHHHCCCeEEEEEec-cchhhHh-h-cCccEEEEeC
Confidence 45567788889999988876522 2223444 3 6788777653
No 82
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A*
Probab=34.83 E-value=28 Score=22.16 Aligned_cols=43 Identities=16% Similarity=0.045 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhhCCCceechhhH--HHHHHHHhhC--CCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVSN--PHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~--P~~fDVIV~~N 49 (65)
.+.+++++..++ |+|+++.... +.+..+|... -..+||+...+
T Consensus 17 ~~~~~~~~F~~~-~gi~V~~~~~~~~~~~~kl~~~~~~~~pDv~~~~~ 63 (312)
T 1xvx_A 17 LVKSWVDGFTKD-TGIKVTLRNGGDSELGNQLVQEGSASPADVFLTEN 63 (312)
T ss_dssp HHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESS
T ss_pred HHHHHHHHHHHh-hCCEEEEEECChHHHHHHHHHhhCCCCCCEEEecc
Confidence 456777777777 8887776543 3444556432 24689998765
No 83
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=33.79 E-value=38 Score=20.11 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhhCCCceechhhHHH-HHHHHhhCCCCccEEec
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVDN-CTMQIVSNPHQFDVMVM 47 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vDa-~~~~lv~~P~~fDVIV~ 47 (65)
..-....+..++||+|+++-...+. -..+.+.+ ++.|+.++
T Consensus 44 ~l~~~l~~f~~~~P~v~l~~~~~~~~~~~~~l~~-g~~Dl~i~ 85 (238)
T 2hxr_A 44 FIGPLMADFYARYPSITLQLQEMSQEKIEDMLCR-DELDVGIA 85 (238)
T ss_dssp THHHHHHHHHHHCTTSCEEEEECCHHHHHHHHHT-TSCSEEEE
T ss_pred HHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHc-CCCcEEEE
Confidence 4456777888999998876554322 12233333 55786664
No 84
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=32.51 E-value=86 Score=19.48 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=24.5
Q ss_pred HHHHHHHHhhCCCceechh-----hHH---HHHHHHhhCCCCccEEecCC
Q psy9334 8 PNLGQTMAKLYPKIQFEQM-----IVD---NCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~~~-----~vD---a~~~~lv~~P~~fDVIV~~N 49 (65)
.+-+++..+++|++++... -.+ ..+.++++...++|.|++.|
T Consensus 150 ~~gf~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~~ 199 (290)
T 2fn9_A 150 SNGFHSVVDQYPEFKMVAQQSAEFDRDTAYKVTEQILQAHPEIKAIWCGN 199 (290)
T ss_dssp HHHHHHHHTTSTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTCCEEEESS
T ss_pred HHHHHHHHHhCCCCEEEEeccCCCCHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 3445556666776654221 112 34456666555689999887
No 85
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=32.34 E-value=77 Score=20.80 Aligned_cols=53 Identities=9% Similarity=0.128 Sum_probs=30.5
Q ss_pred hhchHHHHHHHHHhhCC---CceechhhHHHHH---HHHhhCCCCccEEecCCchHHHHHh
Q psy9334 3 CRFGYPNLGQTMAKLYP---KIQFEQMIVDNCT---MQIVSNPHQFDVMVMPNLYGNIVDN 57 (65)
Q Consensus 3 ~~~~f~~~~~eva~~yp---dV~~~~~~vDa~~---~~lv~~P~~fDVIV~~Nl~GDIlSD 57 (65)
.+.+. +.+++++++|. +|.+-.-..+... .+++ +.+.+|||++----+.+|-+
T Consensus 21 ~~~L~-~~~~~i~~e~~~~~~I~vi~~~le~av~~a~~~~-~~~~~dVIISRGgta~~Lr~ 79 (225)
T 2pju_A 21 VTRLF-ELFRDISLEFDHLANITPIQLGFEKAVTYIRKKL-ANERCDAIIAAGSNGAYLKS 79 (225)
T ss_dssp CHHHH-HHHHHHHTTTTTTCEEEEECCCHHHHHHHHHHHT-TTSCCSEEEEEHHHHHHHHT
T ss_pred hHHHH-HHHHHHHHhhCCCceEEEecCcHHHHHHHHHHHH-hcCCCeEEEeCChHHHHHHh
Confidence 33444 48888888863 3443223344333 2322 33458999998777777654
No 86
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=31.53 E-value=19 Score=20.26 Aligned_cols=27 Identities=19% Similarity=0.379 Sum_probs=18.3
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+ ....++++++|+++.+-...+|
T Consensus 34 ~C~~~-~p~~~~~~~~~~~~~~~~vd~d 60 (105)
T 3zzx_A 34 PCKMI-APKLEELSQSMSDVVFLKVDVD 60 (105)
T ss_dssp HHHHH-HHHHHHHHHHCTTEEEEEEETT
T ss_pred CccCC-CcchhhhhhccCCeEEEEEecc
Confidence 67654 4566788999998766554444
No 87
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=31.35 E-value=16 Score=19.69 Aligned_cols=27 Identities=7% Similarity=0.117 Sum_probs=18.1
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+ ....++++++||++.+-...+|
T Consensus 32 ~C~~~-~p~~~~~~~~~~~~~~~~vd~~ 58 (105)
T 4euy_A 32 VCDVM-LRKVNYVLENYNYVEKIEILLQ 58 (105)
T ss_dssp HHHHH-HHHHHHHHHTCTTEEEEEEEEC
T ss_pred chHHH-HHHHHHHHHHcCCceEEEEECC
Confidence 56664 4566788999998766554444
No 88
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=31.35 E-value=38 Score=20.88 Aligned_cols=41 Identities=12% Similarity=0.067 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhhCCCceechhh--HHHHHHHHhhCCCCccEEecC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMI--VDNCTMQIVSNPHQFDVMVMP 48 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~--vDa~~~~lv~~P~~fDVIV~~ 48 (65)
.......+..++||+|+++-.. -+.....|.. +++|+.+..
T Consensus 105 ~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~--g~~Dl~i~~ 147 (294)
T 1ixc_A 105 SLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLA--GTIHVGFSR 147 (294)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHH--TSCSEEEES
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHC--CCccEEEEe
Confidence 4456777888899998776554 3334444444 467876654
No 89
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=31.06 E-value=7.6 Score=22.55 Aligned_cols=39 Identities=18% Similarity=0.359 Sum_probs=24.5
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecC
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMP 48 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~ 48 (65)
||+.+- ...++++++||++.+-...+|. +|++|.|--.|
T Consensus 44 ~C~~~~-p~l~~la~~~~~v~~~~vd~~~-------~~~~~~i~~~P 82 (135)
T 2dbc_A 44 MCLVVN-QHLSVLARKFPETKFVKAIVNS-------CIEHYHDNCLP 82 (135)
T ss_dssp HHHHHH-HHHHHHHHHCSSEEEEEECCSS-------SCSSCCSSCCS
T ss_pred HHHHHH-HHHHHHHHHCCCcEEEEEEhhc-------CcccCCCCCCC
Confidence 566554 4567789999987766555543 24667654444
No 90
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=30.71 E-value=83 Score=20.77 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhh
Q psy9334 25 QMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLAS 60 (65)
Q Consensus 25 ~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa 60 (65)
..+.+.++.++...+.++|+||++-.=|..++-..|
T Consensus 65 ~~l~~~la~~i~~~~~~~D~Ivg~~~gGi~~A~~lA 100 (232)
T 3mjd_A 65 ATLADYYAQLIIKSDVKYDILFGPAYKGIPLVAAIS 100 (232)
T ss_dssp HHHHHHHHHHHHHCCCCCSEEEECTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHH
Confidence 445666666666666689999999999887775554
No 91
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Probab=30.50 E-value=13 Score=22.55 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=11.7
Q ss_pred CCCCccEEecCCchH
Q psy9334 38 NPHQFDVMVMPNLYG 52 (65)
Q Consensus 38 ~P~~fDVIV~~Nl~G 52 (65)
.++.||+|++.+.+.
T Consensus 111 ~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 111 TAELFDLIVVAEVLY 125 (216)
T ss_dssp CSCCEEEEEEESCGG
T ss_pred CCCCccEEEEccHHH
Confidence 468899999987663
No 92
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=30.32 E-value=26 Score=24.25 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=28.0
Q ss_pred hchHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEecCCchHHHHHhhhhh
Q psy9334 4 RFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASD 61 (65)
Q Consensus 4 ~~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GDIlSD~aa~ 61 (65)
+..+.+...++|++||++++-. +|.. .++.....+...|--|-.|+=.+|+
T Consensus 94 g~~~~~~~~~vA~~~Pdv~fv~--id~~-----~~~~Nv~sv~~~~~eg~ylaG~~A~ 144 (356)
T 3s99_A 94 SFGYMDPTVKVAKKFPDVKFEH--ATGY-----KTADNMSAYNARFYEGRYVQGVIAA 144 (356)
T ss_dssp SGGGHHHHHHHHTTCTTSEEEE--ESCC-----CCBTTEEEEEECHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--Eecc-----ccCCcEEEEEechhHHHHHHHHHHH
Confidence 3456677888999999876543 3321 1223343444444445555554433
No 93
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=29.56 E-value=48 Score=19.42 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhhCCCceechh--hHHHHHHHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQM--IVDNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~--~vDa~~~~lv~~P~~fDVIV~~N 49 (65)
.+.++.++..++ |+|+++-. --..+..+|... +.+|++++.+
T Consensus 13 ~l~~~~~~F~~~-p~i~v~~~~~~s~~l~~~l~~g-~~~Dv~~~~~ 56 (231)
T 1atg_A 13 TLEQLAGQFAKQ-TGHAVVISSGSSGPVYAQIVNG-APYNVFFSAD 56 (231)
T ss_dssp HHHHHHHHHHHH-HCCCEEEEEECHHHHHHHHHTT-CCCSEEECSS
T ss_pred HHHHHHHHHHhc-cCCeEEEEECCcHHHHHHHHcC-CCCCEEEeCC
Confidence 455677777777 88776643 334444555443 3499988754
No 94
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for structural genomics of infectious diseases, csgid; HET: TRS; 1.44A {Staphylococcus aureus subsp}
Probab=29.53 E-value=41 Score=23.47 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=29.1
Q ss_pred Cceec-hhhHHHHHHHHhh------C--CCCccEEecCCch-HHHHHhhhhhccC
Q psy9334 20 KIQFE-QMIVDNCTMQIVS------N--PHQFDVMVMPNLY-GNIVDNLASDIKG 64 (65)
Q Consensus 20 dV~~~-~~~vDa~~~~lv~------~--P~~fDVIV~~Nl~-GDIlSD~aa~l~G 64 (65)
++.++ ++-.|++.-.=+. . -+++||+|.||+- |+|+--+..-+.|
T Consensus 237 ~~~vdGpl~~D~A~~~~~~~~k~~~s~vaG~advli~P~l~aGNi~~K~l~~~~~ 291 (331)
T 4e4r_A 237 EAIIDGEFQFDAAIVPGVAEKKAPGAKLQGDANVFVFPSLEAGNIGYKIAQRLGG 291 (331)
T ss_dssp SCEEEEEECHHHHHCHHHHHHHSTTCSCSSCCCEEECSSHHHHHHHHHHHHHTTC
T ss_pred CeEEEccCcHHHHcCHHHHHhhCCCCccCCcCCEEEeCChhHHHHHHHHHHHhcC
Confidence 66654 3557777633332 2 2689999999996 8887766554433
No 95
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=29.18 E-value=89 Score=18.24 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=25.1
Q ss_pred hHHHHHHHHHhhCCCceechh--hHHHHHHHHhhCCCCccEEec
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQM--IVDNCTMQIVSNPHQFDVMVM 47 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~--~vDa~~~~lv~~P~~fDVIV~ 47 (65)
..-....+..++||+|+++-. .-+.....|.. ++.|+.+.
T Consensus 19 ~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~--g~~Dl~i~ 60 (219)
T 1i6a_A 19 LLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDS--GKLDAVIL 60 (219)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHH--TSCSEEEE
T ss_pred hhhHHHHHHHHHCCCeEEEEEECChHHHHHHHHc--CCeeEEEe
Confidence 445677788899999887654 33344333433 56786654
No 96
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=28.86 E-value=22 Score=19.42 Aligned_cols=27 Identities=37% Similarity=0.645 Sum_probs=18.1
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
+|+.+.. ..++++++|+++.+-...+|
T Consensus 48 ~C~~~~~-~l~~~~~~~~~~~~~~vd~~ 74 (122)
T 2vlu_A 48 PCRIMAP-VFADLAKKFPNAVFLKVDVD 74 (122)
T ss_dssp HHHHHHH-HHHHHHHHCTTSEEEEEETT
T ss_pred HHHHHHH-HHHHHHHHCCCcEEEEEECC
Confidence 5665544 66788899998766555444
No 97
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=28.26 E-value=34 Score=17.49 Aligned_cols=28 Identities=11% Similarity=0.247 Sum_probs=19.9
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDN 30 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vDa 30 (65)
+|+.. +...++++++|+++++....+|.
T Consensus 13 ~C~~~-~~~l~~l~~~~~~i~~~~vdi~~ 40 (85)
T 1ego_A 13 YCVRA-KDLAEKLSNERDDFQYQYVDIRA 40 (85)
T ss_dssp HHHHH-HHHHHHHHHHHSSCEEEEECHHH
T ss_pred CHHHH-HHHHHHHHhcCCCceEEEEeccc
Confidence 45543 44667788888889888887765
No 98
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=28.08 E-value=47 Score=21.29 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=26.7
Q ss_pred chHHHHHHHHHhhCCCceechhh--HHHHHHHHhhCCCCccEEecC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMI--VDNCTMQIVSNPHQFDVMVMP 48 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~--vDa~~~~lv~~P~~fDVIV~~ 48 (65)
........+..++||+|+++-.. -+.....|.. +++|+.+..
T Consensus 103 ~~l~~~l~~f~~~~P~v~l~l~~~~~~~~~~~l~~--g~~Dlai~~ 146 (313)
T 2h98_A 103 GLLPEIIYLFRQQNPEIHIELIECGTKDQINALKQ--GKIDLGFGR 146 (313)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEEECCHHHHHHHHHH--TSCSEEEES
T ss_pred hHHHHHHHHHHHHCCCeEEEEEeCChHHHHHHHHc--CCCCEEEEe
Confidence 34556778888999998776543 3444444444 467876653
No 99
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A
Probab=27.96 E-value=59 Score=20.52 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhhCCCceechhhH--HHHHHHHhh-C-CCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVS-N-PHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~-~-P~~fDVIV~~N 49 (65)
.+.+++++..+ +|+|+++.... +.+..+|.. . -..+||+...+
T Consensus 12 ~~~~~~~~F~~-~~gi~V~~~~~~~~~~~~kl~~~~~~~~pDv~~~~~ 58 (309)
T 1nnf_A 12 AATAVAKAFEQ-ETGIKVTLNSGKSEQLAGQLKEEGDKTPADVFYTEQ 58 (309)
T ss_dssp HHHHHHHHHHH-HSCCCEEEEECCHHHHHHHHHHHGGGCCCSEEEESC
T ss_pred HHHHHHHHHHh-CCCcEEEEEeCChHHHHHHHHHhcCCCCCCEEEecc
Confidence 45666666664 48887776544 445556633 2 25789998764
No 100
>1uj8_A ORF3, hypothetical protein YFHJ; iron-sulfur cluster, ISC, structural genomics, unknown function; 1.75A {Escherichia coli} SCOP: a.159.5.1 PDB: 2bzt_A
Probab=27.75 E-value=92 Score=17.90 Aligned_cols=35 Identities=17% Similarity=0.429 Sum_probs=21.6
Q ss_pred HHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCcc
Q psy9334 8 PNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFD 43 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fD 43 (65)
+++|.++.++||++.-...-.-.+ .++|..-..||
T Consensus 20 ~dIA~~L~e~~Pd~DP~tvRFTdL-~~wV~~L~~Fd 54 (77)
T 1uj8_A 20 REIGEALYDAYPDLDPKTVRFTDM-HQWICDLEDFD 54 (77)
T ss_dssp HHHHHHHHHHSTTSCGGGCCHHHH-HHHHHTSTTBC
T ss_pred HHHHHHHHHHCCCCCcCEeeHHHH-HHHHHhCCCcC
Confidence 478999999999976554433333 34444444554
No 101
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=26.87 E-value=26 Score=18.73 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=18.0
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+- ...++++++||++.+-...+|
T Consensus 35 ~C~~~~-~~~~~~~~~~~~~~~~~vd~~ 61 (107)
T 1gh2_A 35 PCLRIA-PAFSSMSNKYPQAVFLEVDVH 61 (107)
T ss_dssp HHHHHH-HHHHHHHHHCTTSEEEEEETT
T ss_pred hhHHHH-HHHHHHHHHCCCcEEEEEECc
Confidence 566544 456778888988776655554
No 102
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=26.59 E-value=38 Score=20.81 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=21.8
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHHHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNC 31 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vDa~ 31 (65)
||+..-- ...+++++||++.+....+|.-
T Consensus 68 pC~~~~P-~l~~l~~~~~~v~~~~v~~d~~ 96 (167)
T 1z6n_A 68 DCQINLA-ALDFAQRLQPNIELAIISKGRA 96 (167)
T ss_dssp HHHHHHH-HHHHHHHHCTTEEEEEECHHHH
T ss_pred hHHHHHH-HHHHHHHHCCCcEEEEEECCCC
Confidence 6776544 5667888999988888888754
No 103
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=26.52 E-value=86 Score=17.20 Aligned_cols=30 Identities=10% Similarity=0.328 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCCceech--hhHHHHHHHHhh
Q psy9334 8 PNLGQTMAKLYPKIQFEQ--MIVDNCTMQIVS 37 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~~--~~vDa~~~~lv~ 37 (65)
+.+.+++.++||++.+.+ -+|+......++
T Consensus 36 K~VR~~Le~~~pg~dLs~kK~~I~~~I~~~L~ 67 (70)
T 1q1v_A 36 KQICKKVYENYPTYDLTERKDFIKTTVKELIS 67 (70)
T ss_dssp HHHHHHHHHHCSSSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCChHHHHHHHHHHHHHHh
Confidence 567778888898766654 467777666553
No 104
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=26.41 E-value=53 Score=20.19 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=21.4
Q ss_pred chhchHHHHHHHHHhhCCC--ceechhhHHHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPK--IQFEQMIVDNC 31 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypd--V~~~~~~vDa~ 31 (65)
||+ ...-+..|+|++|++ +++-...+|.-
T Consensus 50 pCk-~iaPvleela~e~~g~~v~~~KVdvDe~ 80 (140)
T 2qgv_A 50 EVS-DNPVMIGELLHEFPDYTWQVAIADLEQS 80 (140)
T ss_dssp TTT-HHHHHHHHHHTTCTTSCCEEEECCHHHH
T ss_pred cHH-HHHhHHHHHHHHcCCCeEEEEEEECCCC
Confidence 443 445588899999974 88888888864
No 105
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=26.26 E-value=23 Score=23.49 Aligned_cols=20 Identities=10% Similarity=0.413 Sum_probs=16.7
Q ss_pred CccEEecCCchHHHHHhhhh
Q psy9334 41 QFDVMVMPNLYGNIVDNLAS 60 (65)
Q Consensus 41 ~fDVIV~~Nl~GDIlSD~aa 60 (65)
+||+|+..|+=|+++.++..
T Consensus 90 ~~D~IviaGmGg~lI~~IL~ 109 (230)
T 3lec_A 90 NIDTITICGMGGRLIADILN 109 (230)
T ss_dssp CCCEEEEEEECHHHHHHHHH
T ss_pred ccCEEEEeCCchHHHHHHHH
Confidence 69999999999988777653
No 106
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=26.25 E-value=28 Score=18.96 Aligned_cols=27 Identities=7% Similarity=0.192 Sum_probs=18.3
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+ ....++++++|+++.+-...+|
T Consensus 33 ~C~~~-~~~l~~~~~~~~~v~~~~vd~~ 59 (110)
T 2l6c_A 33 HCKNM-EKVLDKFGARAPQVAISSVDSE 59 (110)
T ss_dssp THHHH-HHHHHHHHTTCTTSCEEEEEGG
T ss_pred hHHHH-HHHHHHHHHHCCCcEEEEEcCc
Confidence 57665 4466788889998766555444
No 107
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A
Probab=26.20 E-value=43 Score=21.83 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhhCCCceechhhHHHHHHHHhh-CCCCccEEecCCch
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVS-NPHQFDVMVMPNLY 51 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~-~P~~fDVIV~~Nl~ 51 (65)
..++++.++..+++|+|+++...-|. +.+ --..+||+...+.+
T Consensus 16 ~~~~~~~~~F~~~~p~i~V~~~~~~~----~~~~~~~~pDv~~~~~~~ 59 (371)
T 3thi_A 16 RFQAAVLDQWQRQEPGVKLEFTDWDS----YSADPPDDLDVFVLDSIF 59 (371)
T ss_dssp HHHHHHHHHHHHHCTTSEEEECCCCT----TTCCCCTTCCEEEEEGGG
T ss_pred HHHHHHHHHHHHhCCCeeEEEEehhh----hhccCCCCCCEEEECchh
Confidence 35677888888999999888765333 222 24568988876543
No 108
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A*
Probab=26.20 E-value=53 Score=21.64 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=27.7
Q ss_pred chHHHHHHHHHhhCCCceechhhHH--HHHHHHh---hCCCCccEEecCC
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIVD--NCTMQIV---SNPHQFDVMVMPN 49 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~vD--a~~~~lv---~~P~~fDVIV~~N 49 (65)
..+++++++..+++| |+++...++ ....+|. ..-..+||+...+
T Consensus 15 ~~~~~~~~~F~~~~~-i~V~~~~~~~~~~~~kl~~~~~~g~~pDv~~~~~ 63 (382)
T 2gha_A 15 DILQKLGEEFKAKYG-VEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAH 63 (382)
T ss_dssp HHHHHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHGGGTCSCSEEEEEG
T ss_pred HHHHHHHHHHHHHcC-cEEEEEecChHHHHHHHHHHhhCCCCCCEEEeCc
Confidence 356778888888888 887776542 2333332 2234689987753
No 109
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=25.97 E-value=27 Score=19.01 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=18.5
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+- ...++++++|+++.+-...+|
T Consensus 38 ~C~~~~-p~l~~l~~~~~~~~~~~vd~~ 64 (109)
T 3f3q_A 38 PCKMIA-PMIEKFSEQYPQADFYKLDVD 64 (109)
T ss_dssp HHHHHH-HHHHHHHHHCTTSEEEEEETT
T ss_pred hHHHHH-HHHHHHHHHCCCCEEEEEECC
Confidence 576544 466788999998776555554
No 110
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=25.33 E-value=1.2e+02 Score=19.41 Aligned_cols=42 Identities=10% Similarity=-0.006 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCceechh-----hHH---HHHHHHhhCCCCccEEecCCc
Q psy9334 9 NLGQTMAKLYPKIQFEQM-----IVD---NCTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 9 ~~~~eva~~ypdV~~~~~-----~vD---a~~~~lv~~P~~fDVIV~~Nl 50 (65)
+-+++..+++|++++... ..+ ..+.++++...++|.|++.|=
T Consensus 148 ~Gf~~al~~~pg~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~aI~~~nd 197 (325)
T 2x7x_A 148 QGFMAAISKFPDIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAVYAHND 197 (325)
T ss_dssp HHHHHHHHTCTEEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEEEESST
T ss_pred HHHHHHHHhCCCCEEEeeecCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 344555566777654321 111 234566655456898888774
No 111
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431}
Probab=24.90 E-value=50 Score=21.29 Aligned_cols=41 Identities=12% Similarity=0.149 Sum_probs=28.7
Q ss_pred HHHHHHHhhCCCceechhhH---HHHHHHHhhCCCCccEEecCCc
Q psy9334 9 NLGQTMAKLYPKIQFEQMIV---DNCTMQIVSNPHQFDVMVMPNL 50 (65)
Q Consensus 9 ~~~~eva~~ypdV~~~~~~v---Da~~~~lv~~P~~fDVIV~~Nl 50 (65)
++.++..+++ +|+++.... |.+..+|...-..+||++..+-
T Consensus 23 ~~~~~Fe~~~-gi~V~~~~~~~~~~~~~kl~a~~~~~Dv~~~~~~ 66 (330)
T 4eqb_A 23 ELLTQFTEET-GIQVQYETFDSNEAMYTKIKQGGTTYDIAIPSEY 66 (330)
T ss_dssp HHHHHHHHHH-CCEEEEEEESSHHHHHHHHHHCCSCCSEECCBHH
T ss_pred HHHHHHHHHH-CCEEEEEeCCCHHHHHHHHhcCCCCCCEEEECHH
Confidence 5666777777 788777654 3466777776667999986653
No 112
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=24.02 E-value=24 Score=23.59 Aligned_cols=20 Identities=15% Similarity=0.474 Sum_probs=16.3
Q ss_pred CccEEecCCchHHHHHhhhh
Q psy9334 41 QFDVMVMPNLYGNIVDNLAS 60 (65)
Q Consensus 41 ~fDVIV~~Nl~GDIlSD~aa 60 (65)
.||+||.-|+=|+++.++..
T Consensus 90 ~~D~IviagmGg~lI~~IL~ 109 (244)
T 3gnl_A 90 AIDTIVIAGMGGTLIRTILE 109 (244)
T ss_dssp CCCEEEEEEECHHHHHHHHH
T ss_pred cccEEEEeCCchHHHHHHHH
Confidence 49999999999988777653
No 113
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=23.89 E-value=51 Score=19.64 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhhCCCceechhhH--HHHHHHHhhCCCCccEEec
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVSNPHQFDVMVM 47 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~P~~fDVIV~ 47 (65)
+.-++..+..++||+|+++-... +.+...|.. ++.|+.++
T Consensus 22 ~lp~~l~~f~~~~P~v~l~l~~~~~~~l~~~L~~--g~iDl~i~ 63 (218)
T 2y7p_A 22 FMPPLMEALAQRAPHIQISTLRPNAGNLKEDMES--GAVDLALG 63 (218)
T ss_dssp HHHHHHHHHHHHCTTCEEEEECCCTTTHHHHHHH--TSSCEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCcccHHHHHhC--CCceEEEe
Confidence 44567788899999987764432 233333332 34565554
No 114
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=23.70 E-value=31 Score=21.20 Aligned_cols=37 Identities=16% Similarity=0.280 Sum_probs=20.2
Q ss_pred HHHHHHHhhCCCceechhhH--HHHHHHHhhCCCCccEEec
Q psy9334 9 NLGQTMAKLYPKIQFEQMIV--DNCTMQIVSNPHQFDVMVM 47 (65)
Q Consensus 9 ~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~P~~fDVIV~ 47 (65)
+++++++++-++++++...+ +.+.. .++ -.++|++++
T Consensus 37 dl~~~ia~~l~g~~~~~~~~~~~~~~~-~l~-~g~~D~~~~ 75 (243)
T 4gvo_A 37 ELVKEIDKRLPGYKFKFKTMDFSNLLV-SLG-AGKVDIVAH 75 (243)
T ss_dssp HHHHHHHHTCTTEEEEEEECCGGGHHH-HHH-TTSCSEECS
T ss_pred HHHHHHHHhccCCeEEEEECCHHHHHH-HHH-CCCCCEecc
Confidence 67778887755554444333 33322 232 357887753
No 115
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=23.58 E-value=81 Score=18.07 Aligned_cols=29 Identities=7% Similarity=0.094 Sum_probs=18.5
Q ss_pred CCCceechhhHHHHHHHHhhCCCCccEEecCCchHH
Q psy9334 18 YPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGN 53 (65)
Q Consensus 18 ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~GD 53 (65)
+|.+++...- +-.....||+|++.+.+..
T Consensus 59 ~~~v~~~~~d-------~~~~~~~~D~v~~~~~l~~ 87 (170)
T 3i9f_A 59 FDSVITLSDP-------KEIPDNSVDFILFANSFHD 87 (170)
T ss_dssp CTTSEEESSG-------GGSCTTCEEEEEEESCSTT
T ss_pred CCCcEEEeCC-------CCCCCCceEEEEEccchhc
Confidence 5666554432 2234568999998887653
No 116
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A
Probab=23.43 E-value=89 Score=20.68 Aligned_cols=40 Identities=8% Similarity=0.018 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhhCCCceechhhH--H----HHHHHHhhCCCCccEEec
Q psy9334 5 FGYPNLGQTMAKLYPKIQFEQMIV--D----NCTMQIVSNPHQFDVMVM 47 (65)
Q Consensus 5 ~~f~~~~~eva~~ypdV~~~~~~v--D----a~~~~lv~~P~~fDVIV~ 47 (65)
..+.+++++..+++| |+++...+ + .+...+ . -..+||+..
T Consensus 43 ~~~~~~~~~f~~~~~-i~V~~~~~~~~~~~~kl~~~~-a-g~~pDv~~~ 88 (415)
T 3oo8_A 43 AAFASLMQQATTSTT-VPVTVNTTDHNTFQNNISNYL-Q-GTPDSLATW 88 (415)
T ss_dssp HHHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHHH-H-SSCCSEEEE
T ss_pred HHHHHHHHHHHHhCC-eeEEEEecChHHHHHHHHHHH-c-CCCCCEEEe
Confidence 356778888888899 87776554 2 333333 3 345999853
No 117
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=23.39 E-value=55 Score=19.38 Aligned_cols=28 Identities=7% Similarity=0.186 Sum_probs=18.0
Q ss_pred chhchHHHHHHHHHhhCCCce--echhhHHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQ--FEQMIVDN 30 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~--~~~~~vDa 30 (65)
||+.+ .-..++++++|+++. +-...+|.
T Consensus 50 ~C~~l-~P~l~~la~~~~~v~~~~~~Vd~d~ 79 (142)
T 2es7_A 50 EVSDN-PVMIAELLREFPQFDWQVAVADLEQ 79 (142)
T ss_dssp --CCH-HHHHHHHHHTCTTSCCEEEEECHHH
T ss_pred cHHHH-HHHHHHHHHHhcccceeEEEEECCC
Confidence 56655 445678888897777 66666665
No 118
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=23.29 E-value=92 Score=20.20 Aligned_cols=43 Identities=9% Similarity=-0.057 Sum_probs=26.2
Q ss_pred chHHHHHHHHHhh---C--CCceechhh--HHHHHHHHhhCCCCccEEecCC
Q psy9334 5 FGYPNLGQTMAKL---Y--PKIQFEQMI--VDNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 5 ~~f~~~~~eva~~---y--pdV~~~~~~--vDa~~~~lv~~P~~fDVIV~~N 49 (65)
.++.++..+..++ | |+|+++-.. -.....+| ++. +.|+.++.+
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~v~l~~~~s~~l~~~l-~~G-~~Dl~i~~~ 82 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFKVAWYKSDTTVTINYL-KDG-IVDVGITYS 82 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CEEEEEECCHHHHHHHH-HTT-SCSEEEESC
T ss_pred HHHHHHHHHHHhhhcccCCCCeEEEEEeCCHHHHHHHH-HcC-CCcEEEEcC
Confidence 4566788888899 9 987666543 34444444 443 588877654
No 119
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A
Probab=23.26 E-value=41 Score=21.75 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=27.0
Q ss_pred HHHHHHHhhCCCceechhhH---HHHHHHHhhCCCCccEEecCC
Q psy9334 9 NLGQTMAKLYPKIQFEQMIV---DNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 9 ~~~~eva~~ypdV~~~~~~v---Da~~~~lv~~P~~fDVIV~~N 49 (65)
++.++..++| +|+++.... |.+..+|...-..+||+...+
T Consensus 22 ~~~~~Fe~~~-gi~V~~~~~~~~~~~~~kl~ag~~~~Dv~~~~~ 64 (346)
T 3ttm_A 22 DTLEKFTKET-GIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSN 64 (346)
T ss_dssp THHHHHHHHH-CCEEEEEEESCHHHHHHHHHHSCCSCSEECCBH
T ss_pred HHHHHHHHHH-CCEEEEEecCCHHHHHHHHHcCCCCCcEEEeCH
Confidence 4556666676 787776543 445567777666799998664
No 120
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=23.20 E-value=33 Score=19.47 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=18.6
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+.. ..++++++|+++.+-...+|
T Consensus 51 ~C~~~~p-~l~~l~~~~~~v~~~~vd~d 77 (125)
T 1r26_A 51 PCKTIER-PMEKIAYEFPTVKFAKVDAD 77 (125)
T ss_dssp HHHHTHH-HHHHHHHHCTTSEEEEEETT
T ss_pred hHHHHHH-HHHHHHHHCCCCEEEEEECC
Confidence 5766555 46778888998776665554
No 121
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=23.16 E-value=66 Score=20.82 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=26.1
Q ss_pred HHHHHHHhhCCCceechhhH---HHHHHHHhhCCCCccEEecCC
Q psy9334 9 NLGQTMAKLYPKIQFEQMIV---DNCTMQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 9 ~~~~eva~~ypdV~~~~~~v---Da~~~~lv~~P~~fDVIV~~N 49 (65)
++.++..+++ +|+++.... +.+..+|-..-..+||++.++
T Consensus 25 ~~i~~Fek~t-GIkV~~~~~~s~e~~~~kl~ag~~~~DVv~~~~ 67 (333)
T 4gl0_A 25 SLITKFEKET-GIKVIYQTFDSNEAMMTKIEQGGTTFDIAVPSD 67 (333)
T ss_dssp HHHHHHHHHH-CCEEEEEEESCHHHHHHHHHTCSSCCSEECCBH
T ss_pred HHHHHHHHHH-CCEEEEEeCCCHHHHHHHHHcCCCCCeEEEeCH
Confidence 3556666676 677766543 445566666666799988654
No 122
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=23.06 E-value=63 Score=19.16 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=18.4
Q ss_pred hCCCceechhhHHHHHHHHhhCCCCccEEecCCch
Q psy9334 17 LYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY 51 (65)
Q Consensus 17 ~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~~Nl~ 51 (65)
.++.+++...-+.. +-..++.||+|++.+.+
T Consensus 82 ~~~~~~~~~~d~~~----~~~~~~~fD~v~~~~~l 112 (203)
T 3h2b_A 82 THPSVTFHHGTITD----LSDSPKRWAGLLAWYSL 112 (203)
T ss_dssp HCTTSEEECCCGGG----GGGSCCCEEEEEEESSS
T ss_pred hCCCCeEEeCcccc----cccCCCCeEEEEehhhH
Confidence 36666554443322 22345899999997654
No 123
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A*
Probab=22.81 E-value=48 Score=22.86 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=27.9
Q ss_pred hHHHHHHHHHhhCCCceechhhHHHHH---HHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVDNCT---MQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vDa~~---~~lv~~P~~fDVIV~~N 49 (65)
.+++++++..++ |+|+++....+... ...+..-..+||+..++
T Consensus 21 ~~~~~~~~F~~~-~gi~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 66 (475)
T 3n94_A 21 GLAEVGKKFEKD-TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH 66 (475)
T ss_dssp HHHHHHHHHHHH-HSCEEEEECCTTHHHHHHHHHHTTCSCSEEEEEG
T ss_pred HHHHHHHHHhhc-cCcEEEEEeCccHHHHHHHHhcCCCCCcEEEECC
Confidence 467778888777 89888876654433 22334445689887644
No 124
>2l9s_A PHD finger protein 12; protein-peptide complex, amphipathic helix motif, transcript; NMR {Homo sapiens} PDB: 2lkm_A
Probab=22.75 E-value=79 Score=16.41 Aligned_cols=12 Identities=33% Similarity=0.606 Sum_probs=9.5
Q ss_pred HHHHhhCCCCcc
Q psy9334 32 TMQIVSNPHQFD 43 (65)
Q Consensus 32 ~~~lv~~P~~fD 43 (65)
...+.+||++|+
T Consensus 19 ~aA~~~NP~qF~ 30 (45)
T 2l9s_A 19 AAAMERNPTQFQ 30 (45)
T ss_dssp HHHHHSSCCCSS
T ss_pred HHHHHhChhhhc
Confidence 356788999997
No 125
>3tv9_A Putative peptide maturation protein; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta, cytosol; 2.50A {Shigella flexneri}
Probab=22.30 E-value=22 Score=25.61 Aligned_cols=24 Identities=13% Similarity=0.195 Sum_probs=20.7
Q ss_pred CCCccEEecCCchHHHHHhhhhhc
Q psy9334 39 PHQFDVMVMPNLYGNIVDNLASDI 62 (65)
Q Consensus 39 P~~fDVIV~~Nl~GDIlSD~aa~l 62 (65)
|.+|+||+.|...|.++.-+..++
T Consensus 251 ~G~~~Vvl~p~~~~~ll~~~~~~~ 274 (457)
T 3tv9_A 251 TMKAPVIFANEVATGLFGHLVGAI 274 (457)
T ss_dssp SCEEEEEECHHHHHHHHHHHHHHS
T ss_pred CcEEEEEECcHHHHHHHHHHHHhc
Confidence 789999999999999998776554
No 126
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=22.24 E-value=28 Score=17.55 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=17.2
Q ss_pred chhchHHHHHHHHHhhCC-CceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYP-KIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~yp-dV~~~~~~vD 29 (65)
||+..-. ..++++++|+ ++.+....+|
T Consensus 15 ~C~~~~~-~l~~~~~~~~~~~~~~~vd~~ 42 (85)
T 1nho_A 15 YCPMAIE-VVDEAKKEFGDKIDVEKIDIM 42 (85)
T ss_dssp CSTTHHH-HHHHHHHHHCSSCCEEEECTT
T ss_pred chHHHHH-HHHHHHHHhcCCeEEEEEECC
Confidence 5665544 6677888887 5666555544
No 127
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP: d.283.1.1
Probab=22.09 E-value=36 Score=24.24 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=25.8
Q ss_pred hhHHHHHHHHhhC-------CCCccEEecCCchHHHHHhhhhh
Q psy9334 26 MIVDNCTMQIVSN-------PHQFDVMVMPNLYGNIVDNLASD 61 (65)
Q Consensus 26 ~~vDa~~~~lv~~-------P~~fDVIV~~Nl~GDIlSD~aa~ 61 (65)
.+...++.+.+.. |.+|+||+.|...|.++.-+..+
T Consensus 224 ~~~~~a~~~a~~~l~a~~~~~G~~~Vvl~p~~~~~ll~~~~~~ 266 (451)
T 1vpb_A 224 GIGQKALERVLRKLGQKKVQSGKYTMVVDPMNSSRLLSPMISA 266 (451)
T ss_dssp SHHHHHHHHHHTTTTCBCCCCEEEEEEECTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCcCCCCCeEeEEECchHHHHHHHHHHHh
Confidence 3455555555543 78999999999999999654443
No 128
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=22.08 E-value=61 Score=18.82 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEec
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVM 47 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~ 47 (65)
.+-....+..++||+|+++-..-+.. ..|. -++.|+.++
T Consensus 26 ~l~~~l~~f~~~~P~i~l~i~~~~~~-~~l~--~g~~Dl~i~ 64 (219)
T 3kos_A 26 CLFPLLSDFKRSYPHIDLHISTHNNR-VDPA--AEGLDYTIR 64 (219)
T ss_dssp THHHHHHHHHHHCTTEEEEEEEECSC-CCHH--HHTCSEEEE
T ss_pred HHHhHHHHHHHHCCCceEEEEeccCc-cccc--cCCccEEEE
Confidence 44567788889999987775432221 1222 234675554
No 129
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=22.00 E-value=34 Score=18.86 Aligned_cols=27 Identities=19% Similarity=0.359 Sum_probs=18.3
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+- ...++++++|+++.+-...+|
T Consensus 45 ~C~~~~-p~l~~l~~~~~~v~~~~vd~d 71 (116)
T 3qfa_C 45 PSKMIK-PFFHSLSEKYSNVIFLEVDVD 71 (116)
T ss_dssp HHHHHH-HHHHHHHTTCTTSEEEEEETT
T ss_pred HHHHHH-HHHHHHHHHCCCCEEEEEECC
Confidence 576554 466788999998766555544
No 130
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=21.88 E-value=19 Score=24.11 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=19.1
Q ss_pred CCCCccEEecCCch-HHHHHhhhhhccC
Q psy9334 38 NPHQFDVMVMPNLY-GNIVDNLASDIKG 64 (65)
Q Consensus 38 ~P~~fDVIV~~Nl~-GDIlSD~aa~l~G 64 (65)
-|..+||+.|.|+. +.=|.|+...++|
T Consensus 114 l~sgidVitT~Nlqh~esl~d~v~~itg 141 (228)
T 2r8r_A 114 LAAGIDVYTTVNVQHLESLNDQVRGITG 141 (228)
T ss_dssp HHTTCEEEEEEEGGGBGGGHHHHHHHHS
T ss_pred HcCCCCEEEEccccccccHHHHHHHHcC
Confidence 36778999999976 5556666666655
No 131
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1*
Probab=21.68 E-value=32 Score=22.15 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=28.3
Q ss_pred HHHHHHHHhhCCCceechhhH---HHHHHHHhhCC-CCccEEecCC
Q psy9334 8 PNLGQTMAKLYPKIQFEQMIV---DNCTMQIVSNP-HQFDVMVMPN 49 (65)
Q Consensus 8 ~~~~~eva~~ypdV~~~~~~v---Da~~~~lv~~P-~~fDVIV~~N 49 (65)
.++.++..+++ +|+++.... +.+..+|.... ..+||+...+
T Consensus 17 ~~~~~~F~~~~-gi~V~~~~~~~~~~~~~kl~a~~~~~pDv~~~~~ 61 (325)
T 1pot_A 17 PGLLEQFTKET-GIKVIYSTYESNETMYAKLKTYKDGAYDLVVPST 61 (325)
T ss_dssp TTHHHHHHHHH-CEEEEEEEESCHHHHHHHHTTCSSSCSSBBCCBG
T ss_pred HHHHHHHHHHH-CCEEEEEecCCHHHHHHHHhcCCCCCCcEEEECH
Confidence 34566666777 888877654 45667777665 6799987765
No 132
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=21.57 E-value=49 Score=22.65 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhhCCCceechhhHHHHH---HHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVDNCT---MQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vDa~~---~~lv~~P~~fDVIV~~N 49 (65)
.+++++++..++ |+|+++....+... ...+..-..+||+...+
T Consensus 19 ~~~~~~~~F~~~-~gi~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 64 (449)
T 3iot_A 19 GLAEVGKKFEKD-TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH 64 (449)
T ss_dssp HHHHHHHHHHHH-HSCCEEEECCTTHHHHHHHHGGGTCSCSEEEEET
T ss_pred HHHHHHHHHhhc-cCCEEEEEecHHHHHHHHHHhhCCCCCCEEEeCc
Confidence 467777887777 78888776544332 23344445689887643
No 133
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=21.43 E-value=63 Score=19.23 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCCCceechhhHHHHHHHHhhCCCCccEEec
Q psy9334 7 YPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVM 47 (65)
Q Consensus 7 f~~~~~eva~~ypdV~~~~~~vDa~~~~lv~~P~~fDVIV~ 47 (65)
.-....+..++||+|+++-..-+... .+. -+++|+.+.
T Consensus 34 L~~~l~~f~~~~P~i~l~l~~~~~~~-~l~--~~~~Dlai~ 71 (218)
T 2qsx_A 34 LVPNINDFHQRHPNIRVKILTGDGAV-KNI--HGESDLHVR 71 (218)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECCSCC--------CCSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEEecCCcc-ccc--CCCCCEEEE
Confidence 34566778899999888766555442 332 355786654
No 134
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=20.89 E-value=52 Score=21.00 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhCCCceechhhH--HHHHHHHhhCCCCccEEecC
Q psy9334 7 YPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVSNPHQFDVMVMP 48 (65)
Q Consensus 7 f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~P~~fDVIV~~ 48 (65)
.-....+..++||+|+++-..- +... +.+.+ +++|+.+..
T Consensus 108 l~~~l~~f~~~~P~v~i~l~~~~~~~~~-~~l~~-g~~Dlai~~ 149 (324)
T 1al3_A 108 LPGVIKGFIERYPRVSLHMHQGSPTQIA-EAVSK-GNADFAIAT 149 (324)
T ss_dssp SHHHHHHHHHHCTEEEEEEEECCHHHHH-HHHHT-TCCSEEEES
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHH-HHHHC-CCceEEEEe
Confidence 3456777888999987765543 2333 33333 467876654
No 135
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli}
Probab=20.64 E-value=56 Score=23.06 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhhCCCceechhhHHHHH---HHHhhCCCCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIVDNCT---MQIVSNPHQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~vDa~~---~~lv~~P~~fDVIV~~N 49 (65)
.+.+++++..++ |+|+++....+... ...+..-..+||+..++
T Consensus 20 ~~~~~~~~Fe~~-~gI~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 65 (523)
T 3py7_A 20 GLAEVGKKFEKD-TGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH 65 (523)
T ss_dssp HHHHHHHHHHHH-HSCEEEEECCTTHHHHHHHHHHTTCSCSEEEEEG
T ss_pred HHHHHHHHHhhc-cCCEEEEEechHHHHHHHHHhhCCCCCcEEEECc
Confidence 467777788777 89888876544332 23334445589987643
No 136
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=20.52 E-value=62 Score=17.59 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=17.5
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+-. ..++++++|+++.+-...+|
T Consensus 51 ~C~~~~~-~l~~~~~~~~~~~~~~vd~~ 77 (124)
T 1faa_A 51 PCKAMAP-KYEKLAEEYLDVIFLKLDCN 77 (124)
T ss_dssp HHHHHHH-HHHHHHHHCTTSEEEEEECS
T ss_pred hHHHHhH-HHHHHHHHCCCCEEEEEecC
Confidence 5765544 46778889998766554443
No 137
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=20.46 E-value=42 Score=19.47 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=17.9
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+.. ..++++++||++.+-...+|
T Consensus 46 ~C~~~~p-~l~~l~~~~~~v~~~~vd~~ 72 (153)
T 2wz9_A 46 QCAQMNE-VMAELAKELPQVSFVKLEAE 72 (153)
T ss_dssp HHHHHHH-HHHHHHHHCTTSEEEEEETT
T ss_pred hHHHHHH-HHHHHHHHcCCeEEEEEECC
Confidence 5666444 56678888888776655554
No 138
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A
Probab=20.36 E-value=70 Score=20.12 Aligned_cols=43 Identities=5% Similarity=0.063 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhhCCCceechhhH--HHHHHHHhhCC--CCccEEecCC
Q psy9334 6 GYPNLGQTMAKLYPKIQFEQMIV--DNCTMQIVSNP--HQFDVMVMPN 49 (65)
Q Consensus 6 ~f~~~~~eva~~ypdV~~~~~~v--Da~~~~lv~~P--~~fDVIV~~N 49 (65)
.+.++.++..+++ +|+++.... +.+..+|...- ..+||+...+
T Consensus 14 ~~~~~~~~F~~~~-gi~V~~~~~~~~~~~~kl~a~~~~~~~Dv~~~~~ 60 (322)
T 3e13_X 14 ADFEIIKKFEEKT-GIKVNHTQAKASELIKRLSLEGSNSPADIFITAD 60 (322)
T ss_dssp HHHHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHGGGCCCCEEEESC
T ss_pred HHHHHHHHHHHhh-CcEEEEEECCcHHHHHHHHHhccCCCCCEEEecC
Confidence 4566777777774 777776544 45556666332 3699998754
No 139
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=20.29 E-value=64 Score=17.15 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=17.9
Q ss_pred chhchHHHHHHHHHhhCCCceechhhHH
Q psy9334 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVD 29 (65)
Q Consensus 2 ~~~~~f~~~~~eva~~ypdV~~~~~~vD 29 (65)
||+.+.. ..++++++|+++.+-...+|
T Consensus 38 ~C~~~~~-~l~~~~~~~~~v~~~~vd~~ 64 (111)
T 2pu9_C 38 PSKAMAP-KYEKLAEEYLDVIFLKLDCN 64 (111)
T ss_dssp HHHHHHH-HHHHHHHHCTTSEEEEEECS
T ss_pred hHHHHCH-HHHHHHHHCCCeEEEEEecC
Confidence 5765544 46778889998766555444
Done!