RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9334
(65 letters)
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A
3blv_A*
Length = 349
Score = 92.7 bits (231), Expect = 7e-25
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 15 AKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
K YP I +IVDN +MQ V+ PHQFDV+V P++YG I+ N+ + + G
Sbjct: 203 QKEYPDIDVSSIIVDNASMQAVAKPHQFDVLVTPSMYGTILGNIGAALIGG 253
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national
project protein structural and functional analyses; HET:
NAP CIT; 1.80A {Thermus thermophilus}
Length = 496
Score = 93.6 bits (233), Expect = 9e-25
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 11 GQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ +A+ YP I+ +IVDN Q+V P QF+V+V N+ G+I+ +L S + G
Sbjct: 206 FEQVAQEYPDIEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGG 260
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus
tokodaii} SCOP: c.77.1.1
Length = 336
Score = 89.9 bits (224), Expect = 7e-24
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 18 YPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
K+++ +M VD +V NP FDV+V N+YG+I+ + AS I GS
Sbjct: 189 KGKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGS 236
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative
metabolism, allostery, decarboxylase, allosteric enzyme,
magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B*
3blv_B
Length = 354
Score = 89.6 bits (223), Expect = 1e-23
Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFD--VMVMPNLYGNIVDNLAS 60
++K YP + E ++DN +++V+NP + V V PNLYG+I+ +L S
Sbjct: 207 LSKEYPDLTLETELIDNSVLKVVTNPSAYTDAVSVCPNLYGDILSDLNS 255
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase, lysine biosyn; 1.85A {Thermus
thermophilus} PDB: 3asj_A* 3ah3_A
Length = 333
Score = 89.1 bits (222), Expect = 1e-23
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+AK +P + + +IVDNC MQ+V P +FDV+V NL G+I+ +LA+ + G
Sbjct: 188 VAKDFPLVNVQDIIVDNCAMQLVMRPERFDVIVTTNLLGDILSDLAAGLVGG 239
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative
decarboxylase, amino-acid biosynthes lysine
biosynthesis; 1.55A {Schizosaccharomyces pombe} PDB:
3ty3_A
Length = 366
Score = 87.3 bits (217), Expect = 1e-22
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ Y I ++ IVD+ ++ P FDV+V PNLYG+I+ + A+ + GS
Sbjct: 221 LDPSYASINVDEQIVDSMVYRLFREPECFDVVVAPNLYGDILSDGAASLIGS 272
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate
and isopropylmalate dehydrogenases family, biosynthesis;
2.25A {Arabidopsis thaliana}
Length = 405
Score = 75.4 bits (186), Expect = 3e-18
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+A YP ++ M VDN MQ+V +P QFD +V N++G+I+ + AS I GS
Sbjct: 249 LASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNIFGDILSDEASMITGS 300
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating
dehydrogenase; HET: IPM; 1.48A {Shewanella benthica}
PDB: 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A*
3vl3_A*
Length = 375
Score = 74.9 bits (185), Expect = 3e-18
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+AK YP ++ E + +DN TMQ++ P++FDVM+ NL+G+IV + + + GS
Sbjct: 221 VAKDYPDVELEHIYIDNATMQLLRRPNEFDVMLCSNLFGDIVSDEIAMLTGS 272
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase);
oxidoreductase, leucine biosynthetic pathway,
NAD-dependant enzyme; 1.76A {Salmonella typhimurium}
SCOP: c.77.1.1 PDB: 1cm7_A
Length = 363
Score = 74.9 bits (185), Expect = 3e-18
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+AK YP ++ M +DN TMQ++ +P QFDV++ NL+G+I+ + + I GS
Sbjct: 212 VAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGS 263
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid,
oxidoreductase; 1.85A {Campylobacter jejuni} PDB: 3udo_A
Length = 361
Score = 74.5 bits (184), Expect = 4e-18
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+AK Y I E M VDN MQIV NP FDVM+ NL+G+I+ + + I GS
Sbjct: 207 ANVAKDYQDINLEYMYVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGS 260
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI,
protein structure initiative, joint center for structu
genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Length = 366
Score = 74.5 bits (184), Expect = 4e-18
Identities = 18/54 (33%), Positives = 35/54 (64%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+A+ YP ++ + VDN MQ++ P QFDV++ N++G+I+ + ++ + GS
Sbjct: 214 NEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGS 267
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase,
decarboxylating dehydrogenase, leucine biosynthesis;
HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP:
c.77.1.1
Length = 358
Score = 74.5 bits (184), Expect = 4e-18
Identities = 21/52 (40%), Positives = 35/52 (67%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+A+ YP ++ M VDN MQ++ P QFDV++ N++G+I+ + AS + GS
Sbjct: 207 VARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGS 258
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium,
manganese, NAD, oxidoreductase; HET: NAD; 2.00A
{Pseudomonas putida} PDB: 3fmx_X*
Length = 364
Score = 74.2 bits (183), Expect = 5e-18
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
MA YP + +++ +D + V P +FDV+V NL+G+I+ +L G+
Sbjct: 210 MAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGT 261
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB:
2ayq_A 1v53_A 1v5b_A
Length = 390
Score = 74.2 bits (183), Expect = 5e-18
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ +AK YP ++ E M+VDN MQ++ NP QFDV+V N++G+I+ + AS I GS
Sbjct: 226 EEVAKEYPDVELEHMLVDNAAMQLIRNPRQFDVIVTENMFGDILSDEASMITGS 279
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine
biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus}
PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A
2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A
1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Length = 359
Score = 74.1 bits (183), Expect = 5e-18
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + + YP + E VD M +V +P +FDV+V N++G+I+ +LAS + GS
Sbjct: 203 EEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGS 256
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural
genomics center for infectious ssgcid, glyoxylate
bypass, manganese; 1.65A {Burkholderia pseudomallei}
PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A
1sjs_A 3icd_A 3lcb_C* 4icd_A* 5icd_A* 9icd_A* 1bl5_A*
1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A 8icd_A* 6icd_A ...
Length = 427
Score = 72.0 bits (177), Expect = 4e-17
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 6 GYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
G P + K +I + I D QI+ P ++DV+ NL G+ + + + G
Sbjct: 270 GGPWMKFKNPKTGNEIVVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVGG 329
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine
biosynthesis, NAD, ST genomics, PSI, protein structure
initiative; 1.65A {Mycobacterium tuberculosis} SCOP:
c.77.1.1 PDB: 2g4o_A
Length = 337
Score = 71.0 bits (175), Expect = 7e-17
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 14 MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ + YP ++ VD T+ ++++P +FDV+V NL+G+I+ +LA+ + G
Sbjct: 197 VGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGG 248
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 70.4 bits (173), Expect = 1e-16
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 6 GYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIV-DNLA 59
+ KI I DN QI++ P + V+V PNL G+ + D +
Sbjct: 264 QEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAPNLNGDYISDAAS 318
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
domain swapping, phosphorylation, aromatic cluster,
NADP; 2.5A {Archaeoglobus fulgidus}
Length = 412
Score = 70.0 bits (172), Expect = 2e-16
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 6 GYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ KI + I DN QI++ ++DV+ +PNL G+ + + A+ + G
Sbjct: 254 DELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALPNLNGDYLSDAAAALIGG 313
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic
acid cycle, oxidoreductase, protein phosphorylation,
NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP:
c.77.1.1
Length = 423
Score = 69.7 bits (171), Expect = 3e-16
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 7 YPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
N Q+ A+ KI + I D QI++ P++FDV+ NL G+ + + + G
Sbjct: 265 AANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGG 323
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase;
homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii
str} PDB: 2dht_A 2e5m_A*
Length = 409
Score = 69.2 bits (170), Expect = 3e-16
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 18 YPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
KI I DN QI+ P ++D+++ PN+ G+ + + A + G+
Sbjct: 263 QGKIILNDRIADNMFQQIIIRPEEYDIILAPNVNGDYISDAAGALIGN 310
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein,
isocitrate/isopropylmalate dehydrogenase-like fold,
oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus
thiooxidans}
Length = 429
Score = 68.9 bits (169), Expect = 4e-16
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 12 QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
+ A K+ + +I DN QI+ P + V+ NL G+ V + + G
Sbjct: 279 EQQAIADGKLIIKDVIADNFLQQILLRPEDYSVVATLNLNGDYVSDALAAEVGG 332
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 30.6 bits (69), Expect = 0.015
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVDN 57
C +L +A+ +P+ +F + IV++C + +P ++ G I
Sbjct: 44 MCLVVNQHLSV-LARKFPETKFVKAIVNSC-------IEHYHDNCLPTIFVYKNGQIEGK 95
Query: 58 L 58
Sbjct: 96 F 96
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 30.0 bits (67), Expect = 0.027
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 1 MPCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNL--Y--GNIVD 56
C +L + +A YP ++F ++ N +F V+P L Y G ++
Sbjct: 133 RGCDALNSSL-ECLAAEYPMVKFCKIRASNTGA-----GDRFSSDVLPTLLVYKGGELIS 186
Query: 57 NL 58
N
Sbjct: 187 NF 188
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 29.3 bits (66), Expect = 0.032
Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 12/61 (19%)
Query: 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVDN 57
C +L +A+ +P+ +F + IV++C + +P ++ G I
Sbjct: 37 MCLLVNQHLSL-LARKFPETKFVKAIVNSC-------IQHYHDNCLPTIFVYKNGQIEAK 88
Query: 58 L 58
Sbjct: 89 F 89
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A
{Fasciola hepatica}
Length = 104
Score = 28.8 bits (65), Expect = 0.053
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVD 56
PCR P + +AK P+++F ++ VD + + ++ V MP G VD
Sbjct: 33 PCRNIAPKVEA-LAKEIPEVEFAKVDVDQN--EEAA--AKYSVTAMPTFVFIKDGKEVD 86
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 29.1 bits (65), Expect = 0.065
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVDN 57
C + + +AK P++ F ++ + VS ++++ +P +D
Sbjct: 46 QCAQMNEVMAE-LAKELPQVSFVKLEAEGV--PEVS--EKYEISSVPTFLFFKNSQKIDR 100
Query: 58 L 58
L
Sbjct: 101 L 101
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP:
c.47.1.1
Length = 112
Score = 27.7 bits (62), Expect = 0.17
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVDN 57
PC+ P + +K Y K+ F ++ VD + + ++ MP G+ VD
Sbjct: 40 PCKRIAPFYEE-CSKTYTKMVFIKVDVDEVS----EVTEKENITSMPTFKVYKNGSSVDT 94
Query: 58 L 58
L
Sbjct: 95 L 95
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 27.4 bits (61), Expect = 0.22
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVDN 57
PC+ + + +A +P ++F ++ DN +IVS + V+ +P G ++ +
Sbjct: 51 PCKTIERPMEK-IAYEFPTVKFAKVDADNN-SEIVS---KCRVLQLPTFIIARSGKMLGH 105
Query: 58 L 58
+
Sbjct: 106 V 106
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 27.5 bits (61), Expect = 0.23
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVDN 57
P R P + +++ YP + F + VD S +++ P + G VD
Sbjct: 60 PSRQIAPYYIE-LSENYPSLMFLVIDVDEL--SDFS--ASWEIKATPTFFFLRDGQQVDK 114
Query: 58 L 58
L
Sbjct: 115 L 115
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A
3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 26.1 bits (58), Expect = 0.62
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLY----GNIVD 56
PC+ P ++++ Y + F ++ VD+C + S + +V MP G V
Sbjct: 34 PCKMIKPFF-HSLSEKYSNVIFLEVDVDDC-QDVAS---ESEVKSMPTFQFFKKGQKVG 87
>1gh2_A Thioredoxin-like protein; redox-active center, electron
transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 25.7 bits (57), Expect = 0.69
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 2 PCRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMP 48
PC P M+ YP+ F ++ V C Q + ++ P
Sbjct: 35 PCLRIAPAFSS-MSNKYPQAVFLEVDVHQC--QGTA--ATNNISATP 76
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 25.5 bits (57), Expect = 1.1
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 22 QFEQMIVDNCTMQIVSNPH 40
E+ + ++ +PH
Sbjct: 148 HLEKQFQQGVKLMLLCSPH 166
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 24.0 bits (53), Expect = 3.8
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 22 QFEQMIVDNCTMQIVSNPH 40
E+ ++ NP+
Sbjct: 142 DVEKGFQAGARSILLCNPY 160
>2hqb_A Transcriptional activator of COMK gene; berkeley structure
genomics center target 1957B, structural genomics, PSI;
2.70A {Bacillus halodurans}
Length = 296
Score = 23.8 bits (52), Expect = 5.6
Identities = 4/25 (16%), Positives = 8/25 (32%), Gaps = 2/25 (8%)
Query: 5 FGYPNLGQTMAKLYPKIQFEQMIVD 29
+ T+ YP + F +
Sbjct: 72 HAFAEYFSTIHNQYPDVHFV--SFN 94
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 23.2 bits (51), Expect = 8.5
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 22 QFEQMIVDN-CTMQIVSNPH 40
Q E IV+N + ++ NPH
Sbjct: 155 QLENDIVENDVKLYLLCNPH 174
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 22.9 bits (50), Expect = 8.8
Identities = 7/20 (35%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 22 QFEQMIVD-NCTMQIVSNPH 40
Q E+ I+D N + ++ +PH
Sbjct: 185 QLEKDIIDNNVKIYLLCSPH 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.428
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 967,883
Number of extensions: 41058
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 37
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)