RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9334
         (65 letters)



>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
           subtilis [TaxId: 1423]}
          Length = 423

 Score = 53.2 bits (127), Expect = 7e-11
 Identities = 17/59 (28%), Positives = 29/59 (49%)

Query: 7   YPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
             N  Q+ A+   KI  +  I D    QI++ P++FDV+   NL G+ + +  +   G 
Sbjct: 265 AANKAQSEAEAAGKIIIKDSIADIFLQQILTRPNEFDVVATMNLNGDYISDALAAQVGG 323


>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Thermotoga maritima [TaxId: 2336]}
          Length = 362

 Score = 53.2 bits (127), Expect = 7e-11
 Identities = 16/49 (32%), Positives = 33/49 (67%)

Query: 14  MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDI 62
           +A+ YP ++   + VDN  MQ++  P QFDV++  N++G+I+ + ++ +
Sbjct: 212 VAREYPDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAAL 260


>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
           {Bacillus coagulans [TaxId: 1398]}
          Length = 356

 Score = 51.3 bits (122), Expect = 4e-10
 Identities = 24/52 (46%), Positives = 38/52 (73%)

Query: 14  MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
            AK YP ++   M+VD+ +MQ+++NP QFDV+V  N++G+I+ + AS I GS
Sbjct: 207 TAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGS 258


>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 363

 Score = 49.7 bits (118), Expect = 1e-09
 Identities = 20/51 (39%), Positives = 34/51 (66%)

Query: 12  QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDI 62
             +AK YP ++   M +DN TMQ++ +P QFDV++  NL+G+I+ +  + I
Sbjct: 210 NDVAKTYPDVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMI 260


>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Thiobacillus ferrooxidans [TaxId: 920]}
          Length = 357

 Score = 45.9 bits (108), Expect = 3e-08
 Identities = 21/52 (40%), Positives = 35/52 (67%)

Query: 14  MAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
           +A+ YP ++   M VDN  MQ++  P QFDV++  N++G+I+ + AS + GS
Sbjct: 207 VARDYPDVRLSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGS 258


>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 413

 Score = 44.4 bits (104), Expect = 1e-07
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 18  YPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
             KI +E  ++D+   Q++       V    N  G++  ++ +   GS
Sbjct: 241 KYKIWYEHRLIDDMVAQVL-KSSGGFVWACKNYDGDVQSDILAQGFGS 287


>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 414

 Score = 41.8 bits (97), Expect = 8e-07
 Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 12  QTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
                   KI +E  ++D+   Q + +     +    N  G++  +  +   GS
Sbjct: 235 YKSQFEAQKIWYEHRLIDDMVAQAMKSE-GGFIWACKNYDGDVQSDSVAQGYGS 287


>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
           coli [TaxId: 562]}
          Length = 416

 Score = 40.5 bits (94), Expect = 2e-06
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 6   GYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLAS 60
           G P L         +I  + +I D    QI+  P ++DV+   NL G+ + +  +
Sbjct: 260 GGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALA 314


>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Sulfolobus tokodaii [TaxId: 111955]}
          Length = 336

 Score = 34.0 bits (77), Expect = 5e-04
 Identities = 20/48 (41%), Positives = 30/48 (62%)

Query: 18  YPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDNLASDIKGS 65
             K+++ +M VD     +V NP  FDV+V  N+YG+I+ + AS I GS
Sbjct: 189 KGKVEYSEMYVDAAAANLVRNPQMFDVIVTENVYGDILSDEASQIAGS 236


>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A
           (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
          Length = 217

 Score = 22.7 bits (48), Expect = 5.1
 Identities = 5/28 (17%), Positives = 12/28 (42%)

Query: 38  NPHQFDVMVMPNLYGNIVDNLASDIKGS 65
           +  + D +++P  +G   +       GS
Sbjct: 82  DAAELDALIVPGGFGAAKNLSNFASLGS 109


>d1n46a_ a.123.1.1 (A:) Thyroid hormone receptor beta (TR-beta)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 251

 Score = 21.9 bits (46), Expect = 8.1
 Identities = 7/55 (12%), Positives = 20/55 (36%)

Query: 3   CRFGYPNLGQTMAKLYPKIQFEQMIVDNCTMQIVSNPHQFDVMVMPNLYGNIVDN 57
             +   ++     KL  K+   +MI      + +    +    + P L+  + ++
Sbjct: 197 INYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPTELFPPLFLEVFED 251


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.428 

Gapped
Lambda     K      H
   0.267   0.0485    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 241,198
Number of extensions: 8338
Number of successful extensions: 30
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 12
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.5 bits)