BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9336
(99 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95922|TTLL1_HUMAN Probable tubulin polyglutamylase TTLL1 OS=Homo sapiens GN=TTLL1
PE=2 SV=1
Length = 423
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
K+ + TD++KSVLINNFEKRGW+ V ED WNFYW +QT RN+FS+E GYR++D+QI+
Sbjct: 4 KVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVEAGYRLSDDQIV 62
Query: 88 NHFPNHYELT 97
NHFPNHYELT
Sbjct: 63 NHFPNHYELT 72
>sp|Q0VC71|TTLL1_BOVIN Probable tubulin polyglutamylase TTLL1 OS=Bos taurus GN=TTLL1
PE=2 SV=1
Length = 423
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
K+ + TD++KSVLINNFEKRGW+ V ED WNFYW +QT RN+FS+E GYR++D+QI+
Sbjct: 4 KVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62
Query: 88 NHFPNHYELT 97
NHFPNHYELT
Sbjct: 63 NHFPNHYELT 72
>sp|Q91V51|TTLL1_MOUSE Probable tubulin polyglutamylase TTLL1 OS=Mus musculus GN=Ttll1
PE=1 SV=1
Length = 423
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
++ + TD++KSVLINNFEKRGWI V ED WNFYW +QT RN+FS+E GYR++D+QI+
Sbjct: 4 RVKWVTDIEKSVLINNFEKRGWIQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62
Query: 88 NHFPNHYELT 97
NHFPNHYELT
Sbjct: 63 NHFPNHYELT 72
>sp|Q5PPI9|TTLL1_RAT Probable tubulin polyglutamylase TTLL1 OS=Rattus norvegicus
GN=Ttll1 PE=2 SV=1
Length = 423
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Query: 28 KIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQII 87
++ + TD++KSVLINNFEKRGW+ V ED WNFYW +QT RN+FS+E GYR++D+QI+
Sbjct: 4 RVKWVTDIEKSVLINNFEKRGWVQVTENED-WNFYWMSVQTIRNVFSVETGYRLSDDQIV 62
Query: 88 NHFPNHYELT 97
NHFPNHYELT
Sbjct: 63 NHFPNHYELT 72
>sp|Q23SI8|TTLL1_TETTS Probable alpha-tubulin polyglutamylase Ttll1 OS=Tetrahymena
thermophila (strain SB210) GN=Ttll1 PE=3 SV=1
Length = 433
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 50/91 (54%), Gaps = 21/91 (23%)
Query: 28 KIYYCTDLDKSVLINNFEKRGWIHV-NSVEDDWNFYWAGIQTCRNIFS------------ 74
K+ Y TD DK VL +NF RGW + +DDWN YWA + RNIF+
Sbjct: 5 KLKYKTDFDKCVLTDNFAARGWTRCGDKDDDDWNIYWATVWNVRNIFNPKSDSQVVSKSD 64
Query: 75 --------LELGYRMNDNQIINHFPNHYELT 97
+LG R+ND QIINHFPNHYELT
Sbjct: 65 FLFLQKNLQKLGIRLNDMQIINHFPNHYELT 95
>sp|Q3SZH6|TTLL9_BOVIN Probable tubulin polyglutamylase TTLL9 OS=Bos taurus GN=TTLL9
PE=2 SV=1
Length = 461
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 13 NGSGQQNVSPSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNI 72
G G Q +++ I + T L +++ + GW+ V E +W+FYW + R
Sbjct: 10 KGHGLQKGKEREQRASIRFKTTLMNTLMDVLRHRPGWVEVKD-EGEWDFYWCDVSWLREN 68
Query: 73 FSLELGYRMNDNQIINHFPNHYELT 97
F M ++ I+HF NHYELT
Sbjct: 69 FDHTY---MGEHVRISHFRNHYELT 90
>sp|Q641W7|TTLL9_RAT Probable tubulin polyglutamylase TTLL9 OS=Rattus norvegicus
GN=Ttll9 PE=2 SV=1
Length = 461
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 12 ANGSGQQNVSPSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRN 71
+ G G +++ I + T L +++ + GW+ V E +W+FYW + R
Sbjct: 9 SKGHGASKGKEREQRTLIRFKTTLMNTLMDVLRHRPGWVEVKD-EGEWDFYWCDVSWLRE 67
Query: 72 IFSLELGYRMNDNQIINHFPNHYELTN 98
F M+++ I+HF NHYELT
Sbjct: 68 NFDHTY---MDEHVRISHFRNHYELTR 91
>sp|A2APC3|TTLL9_MOUSE Probable tubulin polyglutamylase TTLL9 OS=Mus musculus GN=Ttll9
PE=2 SV=2
Length = 461
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 12 ANGSGQQNVSPSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRN 71
+ G G +++ I + T L +++ + GW+ V E +W+FYW + R
Sbjct: 9 SKGHGVSKGKEREQRTLIRFKTTLMNTLMDVLRHRPGWVEVKD-EGEWDFYWCDVSWLRE 67
Query: 72 IFSLELGYRMNDNQIINHFPNHYELT 97
F M+++ I+HF NHYELT
Sbjct: 68 NFDHTY---MDEHVRISHFRNHYELT 90
>sp|Q3SXZ7|TTLL9_HUMAN Probable tubulin polyglutamylase TTLL9 OS=Homo sapiens GN=TTLL9
PE=2 SV=3
Length = 439
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 14 GSGQQNVSPSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIF 73
G G +++ I + T L +++ + GW+ V E +W+FYW + R F
Sbjct: 29 GHGLSKGKEREQRASIRFKTTLMNTLMDVLRHRPGWVEVKD-EGEWDFYWCDVSWLRENF 87
Query: 74 SLELGYRMNDNQIINHFPNHYELT 97
M+++ I+HF NHYELT
Sbjct: 88 DHTY---MDEHVRISHFRNHYELT 108
>sp|Q8N841|TTLL6_HUMAN Tubulin polyglutamylase TTLL6 OS=Homo sapiens GN=TTLL6 PE=1 SV=2
Length = 843
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 56 EDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYEL 96
+DDW YW SLE M Q INHFP E+
Sbjct: 88 DDDWTLYWTDYSV-----SLERVMEMKSYQKINHFPGMSEI 123
>sp|A4Q9E8|TTLL6_MOUSE Tubulin polyglutamylase TTLL6 OS=Mus musculus GN=Ttll6 PE=2 SV=1
Length = 822
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 57 DDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYEL 96
DDW YW SLE M Q INHFP E+
Sbjct: 88 DDWTLYWTDYSV-----SLERVMEMKSYQKINHFPGMSEI 122
>sp|Q5L530|MIAA_CHLAB tRNA dimethylallyltransferase OS=Chlamydophila abortus (strain
S26/3) GN=miaA PE=3 SV=2
Length = 342
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 14/65 (21%)
Query: 10 YQANGSGQQNVSPSDRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTC 69
Y+ G VS DRQ +Y D+ HV + + +FY+ IQ C
Sbjct: 69 YRGMDIGTAKVSWEDRQRIPHYLIDI--------------CHVQELFNAVDFYYQAIQAC 114
Query: 70 RNIFS 74
+NI S
Sbjct: 115 QNILS 119
>sp|Q23AS2|TTL3E_TETTS Tubulin glycylase 3E OS=Tetrahymena thermophila (strain SB210)
GN=TTLL3E PE=3 SV=1
Length = 1394
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 21/62 (33%)
Query: 36 DKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMNDNQIINHFPNHYE 95
+K +L NNF+ + WI+++S DD+ F +NDNQ NHF N+ E
Sbjct: 758 NKLLLNNNFDLK-WIYIDS-NDDYKF-------------------LNDNQFYNHFKNNTE 796
Query: 96 LT 97
LT
Sbjct: 797 LT 798
>sp|Q8CHB8|TTLL5_MOUSE Tubulin polyglutamylase TTLL5 OS=Mus musculus GN=Ttll5 PE=2 SV=3
Length = 1328
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 24 DRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMND 83
+R + Y D ++ + G+ V+ D+N W G F L +++
Sbjct: 61 ERYHLSYKIVRTDSRLVRSILTAHGFHEVHPSSTDYNLMWTGSHL--KPFLLR---TLSE 115
Query: 84 NQIINHFPNHYELT 97
Q +NHFP YELT
Sbjct: 116 AQKVNHFPRSYELT 129
>sp|Q6EEF3|TTLL5_CHLAE Tubulin polyglutamylase TTLL5 OS=Chlorocebus aethiops GN=TTLL5 PE=2
SV=2
Length = 1299
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 24 DRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMND 83
+R + Y D ++ + G+ V+ D+N W G F L +++
Sbjct: 61 ERYHLSYKIVRTDSRLVRSILTAHGFHEVHPSSTDYNLMWTGSHL--KPFLLR---TLSE 115
Query: 84 NQIINHFPNHYELT 97
Q +NHFP YELT
Sbjct: 116 AQKVNHFPRSYELT 129
>sp|Q5R978|TTLL5_PONAB Tubulin polyglutamylase TTLL5 OS=Pongo abelii GN=TTLL5 PE=2 SV=1
Length = 1299
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 24 DRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMND 83
+R + Y D ++ + G+ V+ D+N W G F L +++
Sbjct: 61 ERYHLSYKIVRTDSRLVRSILTAHGFHEVHPSSTDYNLMWTGSHL--KPFLLR---TLSE 115
Query: 84 NQIINHFPNHYELT 97
Q +NHFP YELT
Sbjct: 116 AQKVNHFPRSYELT 129
>sp|Q6EMB2|TTLL5_HUMAN Tubulin polyglutamylase TTLL5 OS=Homo sapiens GN=TTLL5 PE=1 SV=3
Length = 1281
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 24 DRQNKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGIQTCRNIFSLELGYRMND 83
+R + Y D ++ + G+ V+ D+N W G F L +++
Sbjct: 61 ERYHLSYKIVRTDSRLVRSILTAHGFHEVHPSSTDYNLMWTGSHL--KPFLLR---TLSE 115
Query: 84 NQIINHFPNHYELT 97
Q +NHFP YELT
Sbjct: 116 AQKVNHFPRSYELT 129
>sp|Q80TN7|NAV3_MOUSE Neuron navigator 3 OS=Mus musculus GN=Nav3 PE=1 SV=2
Length = 2359
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 4 ASTKYPYQANGSGQQNVSPSDRQNKIYYCTDLDKSVLI 41
AS K P+ A SG ++ PS + I CT+ + +++
Sbjct: 1738 ASPKLPHNAGESGSSSMKPSQSASAICECTEAEAEIIL 1775
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,131,036
Number of Sequences: 539616
Number of extensions: 1332678
Number of successful extensions: 2788
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2768
Number of HSP's gapped (non-prelim): 21
length of query: 99
length of database: 191,569,459
effective HSP length: 68
effective length of query: 31
effective length of database: 154,875,571
effective search space: 4801142701
effective search space used: 4801142701
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)