Query psy9336
Match_columns 99
No_of_seqs 105 out of 253
Neff 5.0
Searched_HMMs 29240
Date Sat Aug 17 00:42:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tig_A TTL protein; ATP-grAsp, 99.5 8.9E-15 3.1E-19 117.5 4.9 57 39-99 19-77 (380)
2 1jg5_A GTP cyclohydrolase I fe 77.7 1.5 5E-05 28.5 2.4 35 30-64 45-79 (83)
3 1uvq_C Orexin; immunology, MHC 47.5 7.3 0.00025 20.8 1.1 19 1-19 6-24 (33)
4 2jva_A Peptidyl-tRNA hydrolase 39.4 16 0.00054 24.2 2.0 24 10-33 20-43 (108)
5 2b5g_A Diamine acetyltransfera 31.5 29 0.001 21.3 2.3 38 27-65 123-160 (171)
6 1wh5_A ZF-HD homeobox family p 26.9 38 0.0013 20.5 2.1 25 27-51 16-43 (80)
7 1j26_A Immature colon carcinom 22.7 38 0.0013 22.4 1.7 24 10-33 27-50 (112)
8 3eo4_A Uncharacterized protein 21.4 1.5E+02 0.005 18.0 4.2 32 27-59 125-156 (164)
9 4dh9_Y YAEJ; ribosome, YAEJ, r 19.4 36 0.0012 23.4 1.0 37 10-47 20-59 (140)
10 2bei_A Diamine acetyltransfera 18.8 73 0.0025 20.2 2.4 39 27-66 123-161 (170)
No 1
>3tig_A TTL protein; ATP-grAsp, ligase, tubulin; 2.50A {Silurana} PDB: 3tii_A* 3tin_A*
Probab=99.51 E-value=8.9e-15 Score=117.49 Aligned_cols=57 Identities=11% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHHHHHhcC-CEEccCCCCCceEEeccccccc-ccccccccCCCCCCCeecCCCCccccccC
Q psy9336 39 VLINNFEKRG-WIHVNSVEDDWNFYWAGIQTCR-NIFSLELGYRMNDNQIINHFPNHYELTNL 99 (99)
Q Consensus 39 vv~~vl~~rG-W~ev~~~~~dWnl~W~d~~~~~-~~f~~~~~~~L~~~QrVNHFPn~yELTRK 99 (99)
+|+++|+++| |.|+.+++.+|||+|++....+ ..+.+ ...++|+||||||++|||||
T Consensus 19 ~V~~vL~~~g~w~ev~~~~~~~dl~W~~~~~~p~~~l~~----~p~~~Q~vNhfPg~~~l~rK 77 (380)
T 3tig_A 19 EVAKILLASGQWKRLKRDNPKFNLMLGERNRLPFGRLGH----EPGLVQLVNYYRGADKLCRK 77 (380)
T ss_dssp HHHHHHHHTTSEEECCTTCSCCSEEECCSSSCCGGGSSC----STTCCCEESCCTTTHHHHSH
T ss_pred HHHHHHHhcCCeEEeCCCCCceeEEEecCCCCCHHHhcc----CCCcceEEeecCCccccccc
Confidence 6899999999 9999867789999999976432 22221 24789999999999999998
No 2
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=77.70 E-value=1.5 Score=28.45 Aligned_cols=35 Identities=14% Similarity=0.348 Sum_probs=28.6
Q ss_pred EEEecCCchHHHHHHHhcCCEEccCCCCCceEEec
Q psy9336 30 YYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWA 64 (99)
Q Consensus 30 ~f~~~~~~tvv~~vl~~rGW~ev~~~~~dWnl~W~ 64 (99)
-|.++....+|.+-|+++||+.+.-.+..+-+-||
T Consensus 45 ey~v~dpPr~VLnKLE~~G~rVvsmtGvgqtlVWc 79 (83)
T 1jg5_A 45 EYYVNDPPRIVLDKLECRGFRVLSMTGVGQTLVWC 79 (83)
T ss_dssp EEEESSCHHHHHHHHHHTTCEEEEEEEETTEEEEE
T ss_pred EEEcCCChHHHHHHHhccCeEEEEEecCCceEEEE
Confidence 57777777777899999999988755667888887
No 3
>1uvq_C Orexin; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
Probab=47.46 E-value=7.3 Score=20.82 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=15.7
Q ss_pred CCcCccccceecCCCcccc
Q psy9336 1 MKQASTKYPYQANGSGQQN 19 (99)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (99)
|.-.|||.|..|-+||++-
T Consensus 6 MN~pSTKVsWAaVtgggsl 24 (33)
T 1uvq_C 6 MNLPSTKVSWAAVGGGGSL 24 (33)
T ss_pred cCCCccccceEEecCCcee
Confidence 5667999999999988853
No 4
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=39.43 E-value=16 Score=24.20 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.9
Q ss_pred eecCCCccccccCCCCCCceEEEe
Q psy9336 10 YQANGSGQQNVSPSDRQNKIYYCT 33 (99)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~i~f~~ 33 (99)
+-+||-|||||---.....|+|..
T Consensus 20 ~RssGpGGQnVNKv~SaV~L~~d~ 43 (108)
T 2jva_A 20 IRAQGAGGQNVNKVSSAMHLRFDI 43 (108)
T ss_dssp CCCTTCSSSSSCCCCCCEEEEEET
T ss_pred EECCCCCCCCcCCCcceEEEEEEc
Confidence 458999999999988888888854
No 5
>2b5g_A Diamine acetyltransferase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: ALY; 1.70A {Homo sapiens} SCOP: d.108.1.1 PDB: 2b4d_A* 2jev_A* 2g3t_A 2f5i_A 2b3u_A 2b3v_A* 2b4b_A* 2b58_A* 2fxf_A* 3bj7_A* 3bj8_A*
Probab=31.53 E-value=29 Score=21.29 Aligned_cols=38 Identities=16% Similarity=0.345 Sum_probs=27.8
Q ss_pred CceEEEecCCchHHHHHHHhcCCEEccCCCCCceEEecc
Q psy9336 27 NKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAG 65 (99)
Q Consensus 27 ~~i~f~~~~~~tvv~~vl~~rGW~ev~~~~~dWnl~W~d 65 (99)
..|...+...|.--..++++.||+++. ...+|.+|-.+
T Consensus 123 ~~i~l~~~~~N~~a~~~y~k~Gf~~~~-~~~~~~~~~~~ 160 (171)
T 2b5g_A 123 SSMHFLVAEWNEPSINFYKRRGASDLS-SEEGWRLFKID 160 (171)
T ss_dssp SEEEEEEETTCHHHHHHHHTTTCEEHH-HHHTEEEEEEE
T ss_pred CEEEEEEcccCHHHHHHHHHcCCEecc-cccceEEEEEc
Confidence 456666777776556899999999987 55667776543
No 6
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=26.88 E-value=38 Score=20.53 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=15.8
Q ss_pred CceEEEecCCch---HHHHHHHhcCCEE
Q psy9336 27 NKIYYCTDLDKS---VLINNFEKRGWIH 51 (99)
Q Consensus 27 ~~i~f~~~~~~t---vv~~vl~~rGW~e 51 (99)
.+=+.+|.|+.. +|...|+..||..
T Consensus 16 ~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~ 43 (80)
T 1wh5_A 16 IRKRHRTKFTAEQKERMLALAERIGWRI 43 (80)
T ss_dssp CSCCCSCCCCHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhccCcC
Confidence 344667778764 4566677777753
No 7
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=22.73 E-value=38 Score=22.43 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=19.1
Q ss_pred eecCCCccccccCCCCCCceEEEe
Q psy9336 10 YQANGSGQQNVSPSDRQNKIYYCT 33 (99)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~i~f~~ 33 (99)
+-+||-|+|||---.....|+|-.
T Consensus 27 ~RssGpGGQnVNKv~SaV~Lrf~i 50 (112)
T 1j26_A 27 CRSSGPGGQNVNKVNSKAEVRFHL 50 (112)
T ss_dssp ECCCCSSSSCCSSCCCEEEEEEEG
T ss_pred EECCCCCCCCccCCcceEEEEEec
Confidence 558899999998888777777754
No 8
>3eo4_A Uncharacterized protein MJ1062; APC60792.2,MJ_1062,methanocaldococcus jannaschii DSM 2661, S genomics, PSI-2; HET: MES PG6; 2.19A {Methanocaldococcus jannaschii}
Probab=21.35 E-value=1.5e+02 Score=18.02 Aligned_cols=32 Identities=16% Similarity=0.028 Sum_probs=23.9
Q ss_pred CceEEEecCCchHHHHHHHhcCCEEccCCCCCc
Q psy9336 27 NKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDW 59 (99)
Q Consensus 27 ~~i~f~~~~~~tvv~~vl~~rGW~ev~~~~~dW 59 (99)
..|...+.-.|.--+.++++.||+++. ...++
T Consensus 125 ~~i~l~v~~~N~~a~~~y~k~GF~~~g-~~~~~ 156 (164)
T 3eo4_A 125 KKAHARILENNIRSIKLFESLGFKKTK-KGREN 156 (164)
T ss_dssp CEEEEEEETTCHHHHHHHHHTTCEEEE-ECSTT
T ss_pred cEEEEEeCCCCHHHHHHHHHCCCEEEe-eechh
Confidence 467777777887667999999999887 44444
No 9
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=19.41 E-value=36 Score=23.41 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=23.9
Q ss_pred eecCCCccccccCCCCCCceEEEec---CCchHHHHHHHhc
Q psy9336 10 YQANGSGQQNVSPSDRQNKIYYCTD---LDKSVLINNFEKR 47 (99)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~i~f~~~---~~~tvv~~vl~~r 47 (99)
+-+||-|||||---.....|+|-.. +. +.+.+-|.+.
T Consensus 20 ~RssGpGGQnVNKv~SaV~L~~~~~~s~lp-~~~k~rL~~~ 59 (140)
T 4dh9_Y 20 IRAQGAGGQHVNKTSTAIHLRFDIRASSLP-EYYKERLLAA 59 (140)
T ss_dssp ECCCSSSSHHHHTTCCCEEEEECCSSSSSC-SHHHHHHHSC
T ss_pred EECCCCCCCccccccceEEEEEecccccCC-HHHHHHHHHH
Confidence 4477889999988877778887432 33 3334555443
No 10
>2bei_A Diamine acetyltransferase 2; SSAT2, BC011751, AAH11751, thialysine N-acetyltransferase, structural genomics, protein structure initiative, PSI; HET: ACO; 1.84A {Homo sapiens} SCOP: d.108.1.1 PDB: 2q4v_A*
Probab=18.81 E-value=73 Score=20.16 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=27.0
Q ss_pred CceEEEecCCchHHHHHHHhcCCEEccCCCCCceEEeccc
Q psy9336 27 NKIYYCTDLDKSVLINNFEKRGWIHVNSVEDDWNFYWAGI 66 (99)
Q Consensus 27 ~~i~f~~~~~~tvv~~vl~~rGW~ev~~~~~dWnl~W~d~ 66 (99)
..|.-.+.-.|.--+..-++.||+++. ...+|+.+-...
T Consensus 123 ~~i~L~v~~~N~~A~~fY~k~GF~~~~-~~~~~~~~~~~~ 161 (170)
T 2bei_A 123 SQFRLAVLDWNQRAMDLYKALGAQDLT-EAEGWHFFCFQG 161 (170)
T ss_dssp CEEEEEEETTCHHHHHHHHHTTCEEHH-HHHCEEEEEEET
T ss_pred CEEEEEEeccCHHHHHHHHHCCCEecc-cccCeeEEEeCH
Confidence 345555666675446888999999886 556788876543
Done!